AlfalfaGEDB | MS.gene44759

M. sativa cultivar XinJiangDaYe / MS.gene44759

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF13041.9 PF13812.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44759.t1	XP_003621600.1	93.2	792	54	0	98	889	99	890	3.80E-233	818.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44759.t1	Q9SIC9	59.8	259	103	1	613	870	628	886	9.0e-90	333.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44759.t1	G7KS14	93.2	792	54	0	98	889	99	890	2.8e-233	818.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049351	MS.gene44759	0.819382	1.20E-52	-1.69E-46
MS.gene049427	MS.gene44759	0.841188	5.53E-58	-1.69E-46
MS.gene049491	MS.gene44759	0.838484	2.80E-57	-1.69E-46
MS.gene049614	MS.gene44759	0.854547	1.14E-61	-1.69E-46
MS.gene050076	MS.gene44759	0.855166	7.57E-62	-1.69E-46
MS.gene050301	MS.gene44759	0.823708	1.20E-53	-1.69E-46
MS.gene050432	MS.gene44759	0.826795	2.23E-54	-1.69E-46
MS.gene050767	MS.gene44759	0.871626	5.92E-67	-1.69E-46
MS.gene050770	MS.gene44759	0.872094	4.14E-67	-1.69E-46
MS.gene050783	MS.gene44759	0.816625	5.02E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44759.t1	MTR_7g017570	93.034	890	61	1	1	889	1	890	0.0	1640
MS.gene44759.t1	MTR_7g017530	77.639	881	162	4	2	882	3	848	0.0	1414
MS.gene44759.t1	MTR_7g017525	83.262	233	39	0	650	882	1	233	8.63e-141	417
MS.gene44759.t1	MTR_4g107210	25.833	720	487	13	160	847	88	792	2.17e-70	250
MS.gene44759.t1	MTR_3g053350	27.708	397	286	1	177	572	170	566	4.61e-57	211
MS.gene44759.t1	MTR_3g053350	25.634	355	263	1	216	570	421	774	1.99e-40	161
MS.gene44759.t1	MTR_3g053350	25.843	356	263	1	216	571	456	810	9.60e-40	159
MS.gene44759.t1	MTR_3g053350	28.155	309	221	1	233	541	508	815	1.39e-31	133
MS.gene44759.t1	MTR_3g053350	22.476	307	204	2	204	476	514	820	1.41e-21	101
MS.gene44759.t1	MTR_6g079220	30.337	356	245	2	218	572	69	422	4.93e-57	204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44759.t1	AT2G31400	47.921	866	414	7	6	870	57	886	0.0	822
MS.gene44759.t1	AT2G31400	47.690	801	382	7	6	805	57	821	0.0	751
MS.gene44759.t1	AT1G74850	24.533	803	504	18	114	858	47	805	2.28e-66	239
MS.gene44759.t1	AT5G02860	27.311	476	305	5	138	572	93	568	3.40e-57	211
MS.gene44759.t1	AT5G02860	26.611	357	261	1	216	572	423	778	6.06e-44	172
MS.gene44759.t1	AT5G02860	21.308	535	374	8	231	754	298	796	3.30e-38	154
MS.gene44759.t1	AT5G02860	25.260	384	238	4	198	572	365	708	2.49e-36	148
MS.gene44759.t1	AT5G02860	26.269	335	211	7	359	689	141	443	3.22e-26	116
MS.gene44759.t1	AT5G02860	23.220	323	212	3	204	492	481	801	3.06e-23	106
MS.gene44759.t1	AT5G02860	27.311	476	305	5	138	572	93	568	3.40e-57	211

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Find 215 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGGTCATATAAAGA+AGG	0.544455	7.4:-82605887	MS.gene44759:CDS
AAAGAGAGTTTGGCCAAATG+TGG	0.608022	7.4:-82606619	MS.gene44759:CDS
AAAGCACCATCAATAAGCAT+AGG	0.615123	7.4:+82605967	None:intergenic
AACAAGCGAATTGAAAACTC+CGG	0.553519	7.4:+82604847	None:intergenic
AAGACAAACACTGCATATTA+TGG	0.309034	7.4:-82605849	MS.gene44759:CDS
AAGACTATTTGAAGAGATGA+AGG	0.462017	7.4:-82606328	MS.gene44759:CDS
AAGGGAGACGCCGAAATGTG+TGG	0.607661	7.4:-82605277	MS.gene44759:CDS
AAGTTAGTTAGTGCTATGAT+TGG	0.513892	7.4:-82607125	MS.gene44759:CDS
AATGATGGATGGCTATGCCA+AGG	0.731798	7.4:-82606583	MS.gene44759:CDS
AATGCCACAGCATATCTGTG+AGG	0.722085	7.4:+82605451	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTGGTCATATAAAGA+AGG	-	chr7.4:82606652-82606671	MS.gene44759:CDS	30.0%
AAGACAAACACTGCATATTA+TGG	-	chr7.4:82606690-82606709	MS.gene44759:CDS	30.0%
AAGACTATTTGAAGAGATGA+AGG	-	chr7.4:82606211-82606230	MS.gene44759:CDS	30.0%
AAGTTAGTTAGTGCTATGAT+TGG	-	chr7.4:82605414-82605433	MS.gene44759:intron	30.0%
ACAATTCAATCATTGATGCT+GGG	-	chr7.4:82605631-82605650	MS.gene44759:CDS	30.0%
ACTATGCAAAAACGGTTTAA+TGG	-	chr7.4:82606388-82606407	MS.gene44759:CDS	30.0%
ATATGAACATAAGTTATGGG+AGG	-	chr7.4:82605278-82605297	MS.gene44759:CDS	30.0%
ATGATCGATATGTACACTAA+AGG	-	chr7.4:82606272-82606291	MS.gene44759:CDS	30.0%
CATATAAAGAAGGATAGAAG+TGG	-	chr7.4:82606662-82606681	MS.gene44759:CDS	30.0%
CTGAAATGGTTGTAATTGAA+GGG	-	chr7.4:82607244-82607263	MS.gene44759:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	82604778	82607783	82604778	ID=MS.gene44759
chr7.4	mRNA	82604778	82607783	82604778	ID=MS.gene44759.t1;Parent=MS.gene44759
chr7.4	exon	82605775	82607783	82605775	ID=MS.gene44759.t1.exon1;Parent=MS.gene44759.t1
chr7.4	CDS	82605775	82607783	82605775	ID=cds.MS.gene44759.t1;Parent=MS.gene44759.t1
chr7.4	exon	82605443	82605659	82605443	ID=MS.gene44759.t1.exon2;Parent=MS.gene44759.t1
chr7.4	CDS	82605443	82605659	82605443	ID=cds.MS.gene44759.t1;Parent=MS.gene44759.t1
chr7.4	exon	82605143	82605327	82605143	ID=MS.gene44759.t1.exon3;Parent=MS.gene44759.t1
chr7.4	CDS	82605143	82605327	82605143	ID=cds.MS.gene44759.t1;Parent=MS.gene44759.t1
chr7.4	exon	82604778	82605036	82604778	ID=MS.gene44759.t1.exon4;Parent=MS.gene44759.t1
chr7.4	CDS	82604778	82605036	82604778	ID=cds.MS.gene44759.t1;Parent=MS.gene44759.t1

Gene Sequence

>MS.gene44759

ATGACTTCTACACCAACCCCTCCACCAAACTACTCCTCACTCCCTGCTACTCCTAGAAATGCACAAAACCATAATCACAATCACCAAAATCAACAAAACAGTAGACATAGTCACCATAGTACTCATAAACGTCCTAGAGACCGTTGGTCTTCGTCCTCTAGGCACTATTCTACCTCACACTCTGCACCTGTAGCTGCTGATGCTGTTGCTGAAGTAGGTACCAATGGAAGTGGAAGTGCTGCTGCTGCTGCTGGTGGCAGGGGCAGGGGCAATGGCAGAGGCAGAGCAGCATATTCCTCCACTTTGCTGGAGGGCAGGCAATCAAGGTTGGCTCCTGAATTTTCTGGCAGGAGGTCAACGCGGTACGCGGCCAAGATGCATTCTGGAATGCCGAGGGTGACGCCAAACAAACATGCTCACAGTGCTGCGGCTGACGAGGCACTTGGCTGTCTGTTCAAAGCTGGTAACAATGTTACTGCTATTGATAATGTTTTTATTACATATGAACATAAGTTATGGGAGGTTGAAGATTATATTTATATGCTAAAAGAGTTTGGTAATACTCGTAGTCTTTTGCATGCTACAAAGTGTTTTGATTTCATTATGTCGAAACAAAATGGGAGGGTTGATAAAGGCAAGTTAGTTAGTGCTATGATTGGCACTCTTGGTAGGTTAGGGGAGATTAATCTTGCTTTGGGATTGTTTGAAAGAGCTAGGCTTGAAGGGTATGGAAGCACTGTGTATTCCTTTTCGGCCATGATTAGTGCGTTTGGCCGAAATGGGCGCTTCCCTGATGCCGTGGATTTGTTCAGGTCCATGAGTAGCTGGGGAGTCGTACCTAATGTGATAACATACAATTCAATCATTGATGCTGGGGCGAAAGGGGAAGTGAGTTTTGATGTAGTCGTTAAGTTTTACGATGAAATGATAGCCAACGGCATAATGCCAGATAGGCTCACTTACAATTCACTCCTTTCGGTTTGCGCATCGAAGGGCATGTGGGAAATGGCTCAAAAATTATTGAGTGAAATGGACCACAGGCGTATTGTTCCCGATGTGTTTACTTACAACACATATTTGGACACCTTGTGTAAGGCAGGCCAAATTGATTTGGCTAGAAGGGTATTCGAAGAGATGTCGTCAAAGAGAGTTTGGCCAAATGTGGTGACCTACAGTGCAATGATGGATGGCTATGCCAAGGCCAACCTCTTGGAAGACGCCCTAAACCTGTACGAAGAAATGAAGCTCCGATCTGTTTGTCTTGATAGAGTGTCCTATAACACACTAATCGGTATATACGCGAAGCTCGGCAATCTTGCTGAAGCAATTGAGAAGTGCAAAGAGATGGAGAGAACTGGAATCAATAGAGATGTAGTAACATACAATGCTCTTTTGTCCGGGTATGGCAAGCATGGCATGTATGATGAAGTTAGAAGACTATTTGAAGAGATGAAGGCTCGGAATATATATCCAAATACGCTAACTTACTCTACAATGATCGATATGTACACTAAAGGTGCAATGTTTCAGGAAGCAATGAATGTTTATAGAGAGTTCAAGATGGCAAGATTGGAGATTGATGTCGTCTTTTATAGTGCAATCATAGATACACTATGCAAAAACGGTTTAATGGAGTCTTCTATTATGTTGCTTATAGCAATGATGGAGAAAGGAATAAAGCCAAATGTGGTCACCTTTAACTCCATAATAGATGCATCTCAACAATCTCCAACTTTGGAATATGGAGTTAATGGATCTTCTGATGCCATTGACTATCCTATTGAAGAATCGTCTCCTATGCTTATTGATGGTGCTTTTCAGAATAAGCCGGGGGAGGACCGGATTATGAAGATGTTCAAGCAACTTGCTGATGAAAAAGCTGGTCATATAAAGAAGGATAGAAGTGGACGACAAGACAAACACTGCATATTATGGCTCTTCCAAAAAATGCATGAGCTGAACATTAAACCAAATGTTGTCACATTTTCAGCCATTTTGAATGCTTGCAGGTAAATACTTTGACAATATTTTTTGAATTATACATCTTTTGTAATGTGTGCATTGATATTCTTGCATGAATTATAACCATTTTCTAACCATATAATTTGATCCATTTTGATGCAGTCGCTGCAATTCATATGAAGATGCTTCACTGCTGTTAGACACGCTCCGCCTGTTTGATAATCAGGTGTATGGTGTAACCAATGGACTGTTGATGGGTTACAGAGAACAAGTGTGGTTTAGTGCTGAGACTCTGTTCGATGAACTCATGCGTATGGATCCTTCAACCTCGTCTGCCTTTTATAACGCCCTCACAGATATGCTGTGGCATTTTGGTCAGGTAAAAAGTCCAGCCATCAGAAATGTGTCAGTTTTGCTTCTGTTAATTTTCTAATTTGTTTATCTAACATTCTAATTGTTTGTTTTTTTACAATAAAATTTGTTATTGACATCAGAGACGCGGAGCTGAAATGGTTGTAATTGAAGGGAGACGCCGAAATGTGTGGAAAGGCGAATGGTCAATTTCTTGCTTGGATCTGCATCTGATGTCTTGTGGTGCTGCTTGTGCAATGGTTCATTCATGGTTGCTCAGTTTGCATAGTTCTCTTTTTCAAGGCATTCAAATGCCTAAGTTTGTGAAGTAAGGATCTTTACTACCTATGAATTTTATATTGTTTTCATTTATTTGGATTAATAAGATGATTAAATTGTTATCACAATTTCATTTTATTTTTATTTCTTTGCAGCATTTTAACCGGATGGGGAAAGCACAGTAAAGAAATGGGAGTTGGAACTTTGAAAAAGGCTGTTGAAGCACTCCTAAATGGCTTGGGATCACCATTCAGAATTTATGAGAATAATTTGGGAAGATTGGTGTCATCTGGAGAAGTGCTGACTGCATGGCTGACACAACCCGGAGTTTTCAATTCGCTTGTTCTGTATGATGTCCTAAATCATTCTCAAGCTGCTGCTCCATCACATGATTATCCTGCTCTTCAAAATTAG

Protein sequence

>MS.gene44759.t1

MTSTPTPPPNYSSLPATPRNAQNHNHNHQNQQNSRHSHHSTHKRPRDRWSSSSRHYSTSHSAPVAADAVAEVGTNGSGSAAAAAGGRGRGNGRGRAAYSSTLLEGRQSRLAPEFSGRRSTRYAAKMHSGMPRVTPNKHAHSAAADEALGCLFKAGNNVTAIDNVFITYEHKLWEVEDYIYMLKEFGNTRSLLHATKCFDFIMSKQNGRVDKGKLVSAMIGTLGRLGEINLALGLFERARLEGYGSTVYSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGIMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRRIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLIGIYAKLGNLAEAIEKCKEMERTGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGAMFQEAMNVYREFKMARLEIDVVFYSAIIDTLCKNGLMESSIMLLIAMMEKGIKPNVVTFNSIIDASQQSPTLEYGVNGSSDAIDYPIEESSPMLIDGAFQNKPGEDRIMKMFKQLADEKAGHIKKDRSGRQDKHCILWLFQKMHELNIKPNVVTFSAILNACSRCNSYEDASLLLDTLRLFDNQVYGVTNGLLMGYREQVWFSAETLFDELMRMDPSTSSAFYNALTDMLWHFGQRRGAEMVVIEGRRRNVWKGEWSISCLDLHLMSCGAACAMVHSWLLSLHSSLFQGIQMPKFVNILTGWGKHSKEMGVGTLKKAVEALLNGLGSPFRIYENNLGRLVSSGEVLTAWLTQPGVFNSLVLYDVLNHSQAAAPSHDYPALQN