AlfalfaGEDB | MS.gene48345

M. sativa cultivar XinJiangDaYe / MS.gene48345

KEGG: K06617
GO: -
PFAM: PF05691.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48345.t1	XP_013457773.1	96.8	778	24	1	1	777	1	778	0.00E+00	1591.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48345.t1	Q8VWN6	67.2	775	232	8	21	777	28	798	0.0e+00	1095.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48345.t1	A0A072UPP7	96.8	778	24	1	1	777	1	778	0.0e+00	1591.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene48345	-0.801876	7.32E-49	-1.69E-46
MS.gene049281	MS.gene48345	0.817906	2.59E-52	-1.69E-46
MS.gene049285	MS.gene48345	-0.819925	8.99E-53	-1.69E-46
MS.gene049320	MS.gene48345	-0.833641	4.75E-56	-1.69E-46
MS.gene050163	MS.gene48345	-0.817104	3.92E-52	-1.69E-46
MS.gene050165	MS.gene48345	-0.810559	1.09E-50	-1.69E-46
MS.gene050381	MS.gene48345	0.802452	5.57E-49	-1.69E-46
MS.gene050504	MS.gene48345	-0.827639	1.40E-54	-1.69E-46
MS.gene050577	MS.gene48345	-0.80519	1.50E-49	-1.69E-46
MS.gene050612	MS.gene48345	-0.826017	3.42E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48345.t1	MTR_4g105250	96.787	778	24	1	1	777	1	778	0.0	1568
MS.gene48345.t1	MTR_3g077280	70.588	765	212	5	21	777	27	786	0.0	1120
MS.gene48345.t1	MTR_6g004880	63.718	780	265	7	5	777	19	787	0.0	1009
MS.gene48345.t1	MTR_1g052515	40.026	757	415	13	20	769	5	729	0.0	538
MS.gene48345.t1	MTR_5g096820	39.526	759	384	16	22	745	7	725	1.79e-177	528
MS.gene48345.t1	MTR_7g091880	38.747	782	410	18	22	765	7	757	1.74e-173	518
MS.gene48345.t1	MTR_4g115330	37.913	757	392	14	20	760	80	774	8.83e-173	517
MS.gene48345.t1	MTR_4g115330	39.708	685	360	12	92	760	2	649	9.43e-169	502
MS.gene48345.t1	MTR_7g106910	52.542	472	213	7	295	764	383	845	4.73e-167	504
MS.gene48345.t1	MTR_7g106910	44.025	318	156	5	1	307	1	307	3.15e-71	250

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48345.t1	AT5G40390	59.418	791	299	8	1	777	1	783	0.0	976
MS.gene48345.t1	AT4G01970	43.818	833	367	17	25	764	38	862	0.0	672
MS.gene48345.t1	AT4G01970	43.818	833	367	17	25	764	85	909	0.0	671
MS.gene48345.t1	AT5G20250	41.876	757	383	15	20	756	100	819	0.0	556
MS.gene48345.t1	AT5G20250	41.876	757	383	15	20	756	5	724	0.0	556
MS.gene48345.t1	AT5G20250	41.876	757	383	15	20	756	5	724	0.0	556
MS.gene48345.t1	AT5G20250	41.876	757	383	15	20	756	5	724	0.0	556
MS.gene48345.t1	AT3G57520	39.080	783	405	16	22	763	7	758	0.0	547
MS.gene48345.t1	AT1G55740	39.442	753	406	13	22	754	7	729	1.12e-170	510
MS.gene48345.t1	AT3G57520	40.177	677	361	12	22	684	7	653	6.14e-169	502

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Find 192 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACATTGAATGGAGCAA+AGG	0.557425	8.3:+17438649	MS.gene48345:CDS
AACCTTGCAGAACAAGGCCA+AGG	0.647712	8.3:-17439051	None:intergenic
AACGGTACCTATTGGTTGCA+AGG	0.559469	8.3:+17437786	MS.gene48345:CDS
AACTATGGTGGAGCACTCAC+TGG	0.477809	8.3:+17435320	MS.gene48345:CDS
AAGACATTGAATGGAGCAAA+GGG	0.491837	8.3:+17438650	MS.gene48345:CDS
AAGATAATGGAGATTGGAGT+TGG	0.391962	8.3:+17436135	MS.gene48345:CDS
AAGGAGTATGATGAATCTTT+AGG	0.272087	8.3:+17435922	MS.gene48345:CDS
AAGGTTGTTAGAGACCACCT+AGG	0.723577	8.3:+17435604	MS.gene48345:CDS
AATGACAGTTTCTCCTGTGA+TGG	0.579467	8.3:+17438798	MS.gene48345:CDS
AATGGAGATTGGAGTTGGAT+TGG	0.504103	8.3:+17436140	MS.gene48345:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACCCAATTTGCATGAA+AGG	+	chr8.3:17438673-17438692	MS.gene48345:CDS	30.0%
AAGGATTGAATTAACGGAAT+AGG	-	chr8.3:17438135-17438154	None:intergenic	30.0%
ACAAATAAAGAGTCTCTTGT+TGG	-	chr8.3:17438044-17438063	None:intergenic	30.0%
AGAAAAATCTGGTGAGAATT+GGG	+	chr8.3:17438914-17438933	MS.gene48345:CDS	30.0%
AGTTTGAATTGTTCTATACC+TGG	+	chr8.3:17435850-17435869	MS.gene48345:CDS	30.0%
ATAAATTTGGATGGTGTACA+TGG	+	chr8.3:17435671-17435690	MS.gene48345:CDS	30.0%
ATATCGCATATTATATGCAG+GGG	-	chr8.3:17436710-17436729	None:intergenic	30.0%
ATTTAGGGGTTTATTAAAGG+AGG	+	chr8.3:17435978-17435997	MS.gene48345:CDS	30.0%
CACAAACACATATCAAACAT+CGG	-	chr8.3:17437581-17437600	None:intergenic	30.0%
CCATCAATCATACAACTTAT+CGG	-	chr8.3:17438982-17439001	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	17435031	17439098	17435031	ID=MS.gene48345
chr8.3	mRNA	17435031	17439098	17435031	ID=MS.gene48345.t1;Parent=MS.gene48345
chr8.3	exon	17435031	17436254	17435031	ID=MS.gene48345.t1.exon1;Parent=MS.gene48345.t1
chr8.3	CDS	17435031	17436254	17435031	ID=cds.MS.gene48345.t1;Parent=MS.gene48345.t1
chr8.3	exon	17437284	17437461	17437284	ID=MS.gene48345.t1.exon2;Parent=MS.gene48345.t1
chr8.3	CDS	17437284	17437461	17437284	ID=cds.MS.gene48345.t1;Parent=MS.gene48345.t1
chr8.3	exon	17437748	17438115	17437748	ID=MS.gene48345.t1.exon3;Parent=MS.gene48345.t1
chr8.3	CDS	17437748	17438115	17437748	ID=cds.MS.gene48345.t1;Parent=MS.gene48345.t1
chr8.3	exon	17438535	17439098	17438535	ID=MS.gene48345.t1.exon4;Parent=MS.gene48345.t1
chr8.3	CDS	17438535	17439098	17438535	ID=cds.MS.gene48345.t1;Parent=MS.gene48345.t1

Gene Sequence

>MS.gene48345

ATGGCGCCAAGCTTAACCACCGTAAAAGAAACAAATCTTTCCCATGCCAATTCCCATCCCACCATAAAACTAGAAAACTCAACATTCCTCGCCAATAACCACCCAATCCTCACTAAAGTCCCATCAAACATAACCATCACTCCACCACCTCACAAACATGAAAATTCTTCTTCAAACACCACCGTTGCTGGTTGCTTCGTCGGCTTCAATGCCGACGGACCAAGCAGCCGACACATAGTTTCCATCGGCCACCTCACCGGAATCAGATTCACCAGCATATTTAGATTCAAACTATGGTGGAGCACTCACTGGACAGGAACCAAAGGCAGTGACATAGAAAATGAAACTCAAATGATAATACTCGAAAACGACACGGTTAAACAACGTCCCTACGTTCTTCTTTTACCACTCATCGAAGGTTCTTTCAGAGCTTGTCTTCAACCAGGACAAAACAATAACAACGTGGACATTTGCATGGAAAGTGGGTCCACACGTGTTGTTGAATCAACCTTCAAAACATGTTTATACATTCATGCAAACTTCGATCCTTATATTTTAATGAACGAAGCGATTAAGGTTGTTAGAGACCACCTAGGAACATTCAAACTTCTTGAAGAAAAAACAATACCTGATATAGTTGATAAATTTGGATGGTGTACATGGGATGCATTTTACCTTAAGGTGGACCCTCAAGGAGTGAAAGAAGGTGTTAAGGGTTTAGTAGAAGGTGGGTGTCCTCCAAGTTTTGTAATCATTGATGATGGTTGGCAAAACTTTTGTCGTGATGATGAAGATTTTTTGAACGGTGGTGATTGTTTAAGTTTGAATTGTTCTATACCTGGTGAACAAATGTTGGGAAGGTTAATAAGTTTTGAAGAAAATAAAAAATTTAAGGAGTATGATGAATCTTTAGGTATGGGTGGGTTTGTGAGGGATTTAAAGGAGGAATTTAGGGGTTTATTAAAGGAGGTTTATGTGTGGCATGCTTTTTGTGGGTATTGGGGTGGGATTAGACCTAATGTTGAAGGGATGCCGGAGTCGGTGGTGGTTCCGGCGAAATTGTCACCGGGGGCTGAGAGGTGCATGACGGATTTGGCGGTGGTGAAGATAATGGAGATTGGAGTTGGATTGGTGAAGCCAGAAGAGGCATGTCGGTTGTATGATGGACTTCATTCTCATTTGAAATTTGTTGGTATTGATGGTGTCAAGATTGATGTCACACACGTAAGCTTTTGATTAATTCTCCATATTTTGCCTAAATCATAACATATATTTTTTGGTTGATCTTCAATATTTTTGTTTGATGCCTATATCATAACATATGCAAAAATATAATTTAGGCGGCACACATACTAAATATTTAAAATTTAATATAAGGAATTAAGTCAAAAAAATTTAATATATAAGGAATTTTGCCTAAATCATAACATATATTTTTTGGTTGATCTTCAATATTTTTGTTTGATGCCTATATCATAACATATGCAAAAATATAATTTAGGCGGCACACATACTAAATATTTAAAATTTAAGATAAGGAATTAAGTCAAAAAAAATTAATATATAAGGATTAGGACTAGGCACTTGATTTTTTTTTTTTTTGGTCAAGTAGCCTAGTGGCTAGAACTCACACAATTTAATTGTAGAGAAGTGGGTGTCCGGGGTTCGAACCCCGGCCCCTGCATATAATATGCGATATCCCTACCAACTGAGCTATGCTCACGGGGATGGACTAGGCACTTGATTTAAGGATAGTGATTAATTGACAATAGAATTAAATTATACACGAACCAAATATATACCAATTAAATTTTTTATGTGATGTAAATTATTCTTGACAAGGATGAAAGTATTTTTTTATCTGGGCTTCATTTAAATTTAAGAAAGTTTCTCTTTAGCATCACCATTTGCTCTCAATCTCATGCACTTTGAATTGAGGAAAATGCATCCGGTGGTGTTAATACTGTTAGAGGACTTCTCAAATTGATTAACCGATTAAAAGTTGATTGGAAGGATCTAAAAAGTGTCAAACGATACTTAACCACCGTTTTAAAGCTAACGGTAGTTAACTGCCGCACTCAACCAACAGTAAGTTGTATTTTTTTAGCAATTAGAGGGTGCCTAAAGAGCAACTTTCTAAATTTAACATATACAAGTTGGAGTCCCTGATTTTTTAATACTAGAAATTAGAAGCACATATGAATAATACTCCAGAAGTTAATAGTAATACTCTATTTTTGTTGCATATGACAGGTTCTAGAGATGCTGTCAGAGGAATATGGTGGTCGAGTTGAGCTTGCAAAAGCGTACTACAAGGCACTAACTGAATCCGTGAGGAAACATTTCAAAGGCAATGGTGTCATTTCCAGTATGCAACAGTGCAACGATTTCATGTTCCTTGGTACAGAAACCATTTCACTTGGACGAGTTGGTACGTTTTTTAAACTCTCACTAGTTACAACCACTTGAAATCGATATGGTAAACATTAAATTCAAGTCCAAAAACCTTAACCTTTGTAACACCCACACTTCTAATGGAAGATGTGTCCGATGTTTGATATGTGTTTGTGTCTAACACAACACTCATACATATGATTAAATTCAATTGATTCATTTTTTCAAATTTTACCCATGTCCGTGTCATGTCAGTACTTCATATATCTTAATTAACGACAATCTATCTGAGAATTACATTTATCATAAAATGATTTTTGCAGGTGATGATTTTTGGTGCACGGACCCAGCTGGGGATCCAAACGGTACCTATTGGTTGCAAGGATGTCACATGGTGCATTGTGCCTATAACAGCTTATGGATGGGAAATTTTATACAACCAGATTGGGACATGTTTCAATCTCATCATGCTTGTTCTGAATTTCATGCCGCTTCTCGTGCAATCTCTGGTGGACCGATATATGTTAGTGATTCTGTTGGAAACCACAACTTCAAGTTACTCAAGAAGCTGGTTTTGCCGGATGGATCGATTTTGCGGTGTCAACATTATGCACTTCCAACAAGAGACTCTTTATTTGTAGACCCTTTACATGATGGCAAAACAATGCTCAAAATTTGGAATCTCAACAAAGTAAGACACAACACTACCTATTCCGTTAATTCAATCCTTCAAATTTACGAAATAACAATTTTGAACATTCTATGTTTGTCTATATGCAGTAGTGAAAGACTATTCAAGTCAATATGCATATCTTTTATTGATTCGATGGATGATTACTATAGTGATATTTTGATGGAGAGACTAAATTGATCAATATTTTCTAATTTAAGAGACTAAATTGATTCGATGGAGTATTTCGTAAATTTGAAGAACTAAATGTCTTGATCCTTAGAATTTTGAGGACTCAAGTGCTGATTCACTCCTCTTAATCTTTGAAACATGTACACTCCTCAGATTAGGTGTCTTTTCAATTTTCATATTGTTTGTTACTTCGGTTGCAAGTAAATCATTACTCTGATTTTTGTTTGTGTTTTTGCTGCTTATAACAGTATAGTGGAGTTTTGGGTCTATTCAATTGCCAAGGAGGAGGGTGGTGCCCTGTGACTAGAAGAAACAAAAGTGCCTCTGAGTTTTCGCACTCTGTGACTTGTTTTGCAAGTCCTAAAGACATTGAATGGAGCAAAGGGAAAAACCCAATTTGCATGAAAGGTGTTAATGTATTTGCTGTCTACATGTTTAAAGATGAAAAATTGAAGCTGCTGAAGTGCACAGAGACTATAGAAGTTTCACTTGAGCCTTTTAGTTTCGAGCTAATGACAGTTTCTCCTGTGATGGTCATACCGAAAAATTCAATCCAATTTGCTCCAATCGGATTGGTTAACATGCTCAACTCCGGAGGTTCAATTATGTCATTGGAGTTTGATGAAGAGAAAAATCTGGTGAGAATTGGGGTGAGAGGTCATGGAGAAATGAGGGTGTTCGCATCCGAGAAGCCGATAAGTTGTATGATTGATGGAGAAGCTGTGAAATTTGATTATGATGATAGCATGGTAATGCTCCATGTCCCTTGGCCTTGTTCTGCAAGGTTCTCAATGGTTGAGTATTTATTCTGA

Protein sequence

>MS.gene48345.t1

MAPSLTTVKETNLSHANSHPTIKLENSTFLANNHPILTKVPSNITITPPPHKHENSSSNTTVAGCFVGFNADGPSSRHIVSIGHLTGIRFTSIFRFKLWWSTHWTGTKGSDIENETQMIILENDTVKQRPYVLLLPLIEGSFRACLQPGQNNNNVDICMESGSTRVVESTFKTCLYIHANFDPYILMNEAIKVVRDHLGTFKLLEEKTIPDIVDKFGWCTWDAFYLKVDPQGVKEGVKGLVEGGCPPSFVIIDDGWQNFCRDDEDFLNGGDCLSLNCSIPGEQMLGRLISFEENKKFKEYDESLGMGGFVRDLKEEFRGLLKEVYVWHAFCGYWGGIRPNVEGMPESVVVPAKLSPGAERCMTDLAVVKIMEIGVGLVKPEEACRLYDGLHSHLKFVGIDGVKIDVTHVLEMLSEEYGGRVELAKAYYKALTESVRKHFKGNGVISSMQQCNDFMFLGTETISLGRVGDDFWCTDPAGDPNGTYWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSHHACSEFHAASRAISGGPIYVSDSVGNHNFKLLKKLVLPDGSILRCQHYALPTRDSLFVDPLHDGKTMLKIWNLNKYSGVLGLFNCQGGGWCPVTRRNKSASEFSHSVTCFASPKDIEWSKGKNPICMKGVNVFAVYMFKDEKLKLLKCTETIEVSLEPFSFELMTVSPVMVIPKNSIQFAPIGLVNMLNSGGSIMSLEFDEEKNLVRIGVRGHGEMRVFASEKPISCMIDGEAVKFDYDDSMVMLHVPWPCSARFSMVEYLF