AlfalfaGEDB | MS.gene49839

M. sativa cultivar XinJiangDaYe / MS.gene49839

KEGG: K13754
GO: GO:0005575 GO:0006810 GO:0008150 GO:0016021 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF01699.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49839.t1	XP_013451524.1	100	206	0	0	1	206	381	586	3.40E-108	401

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49839.t1	Q9FKP1	61.6	198	76	0	9	206	370	567	8.0e-66	251.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49839.t1	A0A072U799	100.0	206	0	0	1	206	381	586	2.4e-108	401.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene49839	0.807803	4.23E-50	-1.69E-46
MS.gene050020	MS.gene49839	0.818469	1.93E-52	-1.69E-46
MS.gene050303	MS.gene49839	0.82842	9.08E-55	-1.69E-46
MS.gene050438	MS.gene49839	0.82096	5.20E-53	-1.69E-46
MS.gene050442	MS.gene49839	0.800117	1.67E-48	-1.69E-46
MS.gene050815	MS.gene49839	0.85083	1.32E-60	-1.69E-46
MS.gene051626	MS.gene49839	0.821355	4.22E-53	-1.69E-46
MS.gene051789	MS.gene49839	0.824745	6.83E-54	-1.69E-46
MS.gene051860	MS.gene49839	0.803867	2.84E-49	-1.69E-46
MS.gene052376	MS.gene49839	0.804522	2.07E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49839.t1	MTR_6g027580	100.000	206	0	0	1	206	381	586	3.96e-143	411
MS.gene49839.t1	MTR_7g086690	58.291	199	83	0	8	206	385	583	9.13e-70	223
MS.gene49839.t1	MTR_6g027570	58.291	199	83	0	8	206	374	572	1.11e-67	217
MS.gene49839.t1	MTR_8g021180	54.187	203	92	1	1	203	445	646	2.44e-64	210
MS.gene49839.t1	MTR_7g113730	38.824	170	101	1	33	202	349	515	4.55e-23	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49839.t1	AT5G17860	61.000	200	78	0	7	206	333	532	2.69e-81	251
MS.gene49839.t1	AT5G17860	61.000	200	78	0	7	206	368	567	1.07e-80	251
MS.gene49839.t1	AT5G17850	56.995	193	83	0	11	203	364	556	6.46e-65	209
MS.gene49839.t1	AT5G17850	56.995	193	83	0	11	203	364	556	6.46e-65	209
MS.gene49839.t1	AT1G54115	50.739	203	99	1	1	203	437	638	2.10e-64	210
MS.gene49839.t1	AT3G14070	49.754	203	101	1	1	203	436	637	6.29e-64	209
MS.gene49839.t1	AT1G08960	38.021	192	109	2	10	201	361	542	1.50e-29	114

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Find 38 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAAACAAAGGTAAA+TGG	0.374670	6.3:+19214635	None:intergenic
ACCTCTTGTTCTTTCAGCAT+GGG	0.313872	6.3:-19214805	MS.gene49839:CDS
ACCTTATAAACAAGAAACAA+AGG	0.640232	6.3:+19214628	None:intergenic
ACCTTTGTTTCTTGTTTATA+AGG	0.167874	6.3:-19214629	MS.gene49839:CDS
ACGGTTAGCCCTAAAATTGA+AGG	0.489309	6.3:+19214966	None:intergenic
AGAATTTCCCCAAGCCAAAA+CGG	0.537248	6.3:+19214947	None:intergenic
ATAAGGTTAGCCATGGCAAT+TGG	0.456604	6.3:-19214612	MS.gene49839:CDS
ATGGACTTATATAATAGCTG+AGG	0.679474	6.3:-19215036	MS.gene49839:CDS
ATTAAGAGCACCAATTGCCA+TGG	0.587028	6.3:+19214602	None:intergenic
ATTTCAATTGGATATGTAAT+TGG	0.264822	6.3:-19214996	MS.gene49839:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGACTTATATAATAGCTG+AGG	-	chr6.3:19214760-19214779	MS.gene49839:CDS	30.0%
CCCATCAAAATATTGAACAT+AGG	+	chr6.3:19214962-19214981	None:intergenic	30.0%
TAATTCTTACGTTGTTCCTA+AGG	-	chr6.3:19215024-19215043	MS.gene49839:CDS	30.0%
TAGGAACAACGTAAGAATTA+GGG	+	chr6.3:19215024-19215043	None:intergenic	30.0%
TTAGGAACAACGTAAGAATT+AGG	+	chr6.3:19215025-19215044	None:intergenic	30.0%
CAAGAAGATGTTTGTTTCCT+TGG	-	chr6.3:19214708-19214727	MS.gene49839:CDS	35.0%
CAAGGAAACAAACATCTTCT+TGG	+	chr6.3:19214710-19214729	None:intergenic	35.0%
TATGCAACTAAGCTACTCTT+TGG	+	chr6.3:19214617-19214636	None:intergenic	35.0%
ACCTCTTGTTCTTTCAGCAT+GGG	-	chr6.3:19214991-19215010	MS.gene49839:CDS	40.0%
AGAATTTCCCCAAGCCAAAA+CGG	+	chr6.3:19214852-19214871	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	19214599	19215219	19214599	ID=MS.gene49839
chr6.3	mRNA	19214599	19215219	19214599	ID=MS.gene49839.t1;Parent=MS.gene49839
chr6.3	exon	19214599	19215219	19214599	ID=MS.gene49839.t1.exon1;Parent=MS.gene49839.t1
chr6.3	CDS	19214599	19215219	19214599	ID=cds.MS.gene49839.t1;Parent=MS.gene49839.t1

Gene Sequence

>MS.gene49839

ATGGAAAATGTGGATCCAAAGAGTAGCTTAGTTGCATATTTAACATCATCATTGATTGGAATTGTCTTTGGAAACATGGCATGTGTGACAACAAAGAGTACAAGACCACCAAGAAGATGTTTGTTTCCTTGGCTAGCTGGTGGATTTTCAATGAGTGTGACATGGACTTATATAATAGCTGAGGAACTTGTTTCACTTTTGATTTCAATTGGATATGTAATTGGTGTTAGTCCTTCAATTTTAGGGCTAACCGTTTTGGCTTGGGGAAATTCTCTAGGTGATTTGATAGCAAATGGTGCTATGGCTAAAAATGGTGGTGTTGATGGTGCACAAATTGCTGTTTCAGGTTGTTATGCTGGTCCTATGTTCAATATTTTGATGGGTTTAGGGTTACCTCTTGTTCTTTCAGCATGGGGGGAATACCCTAATTCTTACGTTGTTCCTAAGGATAGTTCACTTTTGGGGACAATATTGTTTTTGATGGTAGGGGTACTTTGGTCACTTGTTGTTTTAGTTAAGAAGAATATGAGGCTTGATAAGTTTTTAGGAGCTGGTCTCTTGACCATTTACCTTTGTTTCTTGTTTATAAGGTTAGCCATGGCAATTGGTGCTCTTAATTAA

Protein sequence

>MS.gene49839.t1

MENVDPKSSLVAYLTSSLIGIVFGNMACVTTKSTRPPRRCLFPWLAGGFSMSVTWTYIIAEELVSLLISIGYVIGVSPSILGLTVLAWGNSLGDLIANGAMAKNGGVDGAQIAVSGCYAGPMFNILMGLGLPLVLSAWGEYPNSYVVPKDSSLLGTILFLMVGVLWSLVVLVKKNMRLDKFLGAGLLTIYLCFLFIRLAMAIGALN