Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50613.t1 | KEH42561.1 | 97 | 608 | 15 | 1 | 1 | 608 | 1 | 605 | 0.00E+00 | 1083.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50613.t1 | Q9SJW9 | 38.4 | 623 | 297 | 12 | 3 | 606 | 6 | 560 | 2.3e-76 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50613.t1 | A0A072VLQ6 | 97.0 | 608 | 15 | 1 | 1 | 608 | 1 | 605 | 0.0e+00 | 1083.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene50613 | 0.810379 | 1.19E-50 | -1.69E-46 |
| MS.gene049596 | MS.gene50613 | 0.838555 | 2.68E-57 | -1.69E-46 |
| MS.gene049844 | MS.gene50613 | 0.810333 | 1.21E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene50613 | 0.833143 | 6.31E-56 | -1.69E-46 |
| MS.gene050297 | MS.gene50613 | 0.860814 | 1.59E-63 | -1.69E-46 |
| MS.gene05124 | MS.gene50613 | 0.854586 | 1.12E-61 | -1.69E-46 |
| MS.gene051742 | MS.gene50613 | 0.818793 | 1.63E-52 | -1.69E-46 |
| MS.gene051816 | MS.gene50613 | 0.832129 | 1.13E-55 | -1.69E-46 |
| MS.gene051914 | MS.gene50613 | 0.827016 | 1.97E-54 | -1.69E-46 |
| MS.gene051955 | MS.gene50613 | 0.839768 | 1.30E-57 | -1.69E-46 |
| MS.gene052143 | MS.gene50613 | 0.865471 | 5.76E-65 | -1.69E-46 |
| MS.gene052308 | MS.gene50613 | 0.85884 | 6.25E-63 | -1.69E-46 |
| MS.gene052367 | MS.gene50613 | 0.885747 | 6.23E-72 | -1.69E-46 |
| MS.gene053173 | MS.gene50613 | 0.873607 | 1.29E-67 | -1.69E-46 |
| MS.gene053348 | MS.gene50613 | 0.852679 | 3.94E-61 | -1.69E-46 |
| MS.gene053416 | MS.gene50613 | 0.848104 | 7.58E-60 | -1.69E-46 |
| MS.gene053417 | MS.gene50613 | 0.847436 | 1.16E-59 | -1.69E-46 |
| MS.gene054551 | MS.gene50613 | 0.875976 | 2.01E-68 | -1.69E-46 |
| MS.gene054552 | MS.gene50613 | 0.80875 | 2.66E-50 | -1.69E-46 |
| MS.gene054593 | MS.gene50613 | 0.873359 | 1.56E-67 | -1.69E-46 |
| MS.gene054633 | MS.gene50613 | 0.850654 | 1.48E-60 | -1.69E-46 |
| MS.gene054662 | MS.gene50613 | 0.853361 | 2.51E-61 | -1.69E-46 |
| MS.gene054885 | MS.gene50613 | 0.816921 | 4.31E-52 | -1.69E-46 |
| MS.gene055308 | MS.gene50613 | 0.861252 | 1.17E-63 | -1.69E-46 |
| MS.gene055578 | MS.gene50613 | 0.901289 | 3.12E-78 | -1.69E-46 |
| MS.gene055579 | MS.gene50613 | 0.826748 | 2.29E-54 | -1.69E-46 |
| MS.gene055957 | MS.gene50613 | 0.84915 | 3.89E-60 | -1.69E-46 |
| MS.gene056041 | MS.gene50613 | 0.892258 | 1.87E-74 | -1.69E-46 |
| MS.gene05640 | MS.gene50613 | 0.878849 | 2.01E-69 | -1.69E-46 |
| MS.gene056526 | MS.gene50613 | 0.866735 | 2.29E-65 | -1.69E-46 |
| MS.gene056528 | MS.gene50613 | 0.833512 | 5.11E-56 | -1.69E-46 |
| MS.gene05652 | MS.gene50613 | 0.821898 | 3.16E-53 | -1.69E-46 |
| MS.gene05732 | MS.gene50613 | 0.807278 | 5.47E-50 | -1.69E-46 |
| MS.gene057367 | MS.gene50613 | 0.817446 | 3.28E-52 | -1.69E-46 |
| MS.gene057458 | MS.gene50613 | 0.877119 | 8.11E-69 | -1.69E-46 |
| MS.gene057483 | MS.gene50613 | 0.811155 | 8.07E-51 | -1.69E-46 |
| MS.gene058128 | MS.gene50613 | 0.834954 | 2.22E-56 | -1.69E-46 |
| MS.gene058818 | MS.gene50613 | 0.806373 | 8.49E-50 | -1.69E-46 |
| MS.gene058827 | MS.gene50613 | 0.822504 | 2.29E-53 | -1.69E-46 |
| MS.gene058828 | MS.gene50613 | 0.80389 | 2.81E-49 | -1.69E-46 |
| MS.gene058849 | MS.gene50613 | 0.809319 | 2.01E-50 | -1.69E-46 |
| MS.gene058853 | MS.gene50613 | 0.864057 | 1.60E-64 | -1.69E-46 |
| MS.gene059553 | MS.gene50613 | 0.83132 | 1.78E-55 | -1.69E-46 |
| MS.gene059616 | MS.gene50613 | 0.812557 | 3.99E-51 | -1.69E-46 |
| MS.gene060473 | MS.gene50613 | 0.877965 | 4.11E-69 | -1.69E-46 |
| MS.gene060565 | MS.gene50613 | 0.864214 | 1.43E-64 | -1.69E-46 |
| MS.gene06093 | MS.gene50613 | 0.895605 | 8.18E-76 | -1.69E-46 |
| MS.gene061099 | MS.gene50613 | 0.860666 | 1.76E-63 | -1.69E-46 |
| MS.gene061260 | MS.gene50613 | 0.91214 | 2.74E-83 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50613.t1 | MTR_1g070170 | 97.039 | 608 | 15 | 1 | 1 | 608 | 1 | 605 | 0.0 | 1177 |
| MS.gene50613.t1 | MTR_6g077680 | 29.583 | 551 | 301 | 15 | 88 | 604 | 25 | 522 | 1.03e-49 | 181 |
| MS.gene50613.t1 | MTR_6g077680 | 29.336 | 542 | 288 | 15 | 88 | 591 | 25 | 509 | 1.25e-46 | 174 |
| MS.gene50613.t1 | MTR_6g477680 | 38.298 | 188 | 98 | 4 | 88 | 260 | 9 | 193 | 8.31e-33 | 131 |
| MS.gene50613.t1 | MTR_6g477680 | 40.698 | 86 | 51 | 0 | 519 | 604 | 355 | 440 | 9.82e-13 | 70.9 |
| MS.gene50613.t1 | MTR_6g079130 | 36.905 | 84 | 49 | 1 | 148 | 231 | 18 | 97 | 1.36e-12 | 67.8 |
| MS.gene50613.t1 | MTR_6g079130 | 40.909 | 88 | 50 | 1 | 519 | 604 | 121 | 208 | 5.76e-12 | 65.9 |
| MS.gene50613.t1 | MTR_6g077630 | 40.909 | 88 | 50 | 1 | 519 | 604 | 69 | 156 | 2.65e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50613.t1 | AT2G31270 | 52.830 | 212 | 82 | 3 | 410 | 606 | 352 | 560 | 7.56e-57 | 201 |
| MS.gene50613.t1 | AT2G31270 | 51.389 | 216 | 89 | 4 | 39 | 245 | 41 | 249 | 9.68e-49 | 179 |
| MS.gene50613.t1 | AT3G54710 | 50.311 | 161 | 77 | 3 | 87 | 247 | 27 | 184 | 1.92e-43 | 162 |
| MS.gene50613.t1 | AT3G54710 | 42.205 | 263 | 110 | 8 | 384 | 607 | 218 | 477 | 1.14e-40 | 155 |
Find 127 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGCAGGTATGAGAATT+TGG | 0.208186 | 1.2:+53528582 | MS.gene50613:intron |
| AGTGATGCTCTTAAGGATTC+AGG | 0.231310 | 1.2:-53530937 | None:intergenic |
| ATTAGATTGTTGCGATTAAA+AGG | 0.237039 | 1.2:+53528634 | MS.gene50613:CDS |
| TCAGTTAAAGTTTCAATCTT+TGG | 0.243781 | 1.2:-53528685 | None:intergenic |
| TGTTGCAGGTATGAGAATTT+GGG | 0.273987 | 1.2:+53528583 | MS.gene50613:intron |
| AAGCGCAACGCCGCGGTTGC+GGG | 0.283254 | 1.2:-53528249 | None:intergenic |
| GTGCGCGACTCAATGAGTTT+TGG | 0.299833 | 1.2:+53529000 | MS.gene50613:CDS |
| GCTAAGTTGTTGTCTGAATC+TGG | 0.304619 | 1.2:+53528951 | MS.gene50613:CDS |
| TTCTTCAAGTGATGCTCTTA+AGG | 0.317807 | 1.2:-53530944 | None:intergenic |
| GAGAGGCAACTGCCGGCTTC+TGG | 0.336485 | 1.2:-53529778 | None:intergenic |
| CGGCGTTGCGCTTTCGATAT+CGG | 0.348179 | 1.2:+53528259 | MS.gene50613:CDS |
| GAGGTTTACCCATGCTCATT+TGG | 0.363872 | 1.2:+53528803 | MS.gene50613:CDS |
| GCATCAAACTCAACTGCATC+AGG | 0.365765 | 1.2:-53528930 | None:intergenic |
| GAAGCTCATCCTGCGATTCA+TGG | 0.369956 | 1.2:+53529983 | MS.gene50613:CDS |
| AGCTGGTAGAGTTGTCGTCT+GGG | 0.393195 | 1.2:-53530198 | None:intergenic |
| AGATTGAAACTTTAACTGAT+AGG | 0.395153 | 1.2:+53528689 | MS.gene50613:CDS |
| GAGCTGGTAGAGTTGTCGTC+TGG | 0.402340 | 1.2:-53530199 | None:intergenic |
| TCCTGCGATTCATGGTTCTT+CGG | 0.410216 | 1.2:+53529991 | MS.gene50613:CDS |
| AAAGCGCAACGCCGCGGTTG+CGG | 0.415732 | 1.2:-53528250 | None:intergenic |
| CTCAAACTTGACTCTGAAAC+GGG | 0.425269 | 1.2:-53529893 | None:intergenic |
| TTTGCTTTCTGTATACTCAA+TGG | 0.428293 | 1.2:-53530059 | None:intergenic |
| ACCGAATGGAGAAGATTATC+CGG | 0.434254 | 1.2:-53530340 | None:intergenic |
| CGCCTTCTCAGAAATCCATT+CGG | 0.435905 | 1.2:-53530774 | None:intergenic |
| TGAATCATGTTAAAGAGCTT+AGG | 0.436584 | 1.2:-53530540 | None:intergenic |
| CCCGGATAATCTTCTCCATT+CGG | 0.449170 | 1.2:+53530339 | MS.gene50613:CDS |
| GTTAAAGAGCTTAGGGAGGC+TGG | 0.452098 | 1.2:-53530532 | None:intergenic |
| GTAGCTGACATCAGCCTGGC+TGG | 0.454247 | 1.2:-53530139 | None:intergenic |
| GCCTTCTCAGAAATCCATTC+GGG | 0.459518 | 1.2:-53530773 | None:intergenic |
| CCGTTTCAGAGTCAAGTTTG+AGG | 0.463611 | 1.2:+53529894 | MS.gene50613:CDS |
| CAATGAAATGACGTCGTTGA+AGG | 0.463806 | 1.2:+53528328 | MS.gene50613:CDS |
| ACATGACTTTCTGAGTTAGC+AGG | 0.467209 | 1.2:-53529719 | None:intergenic |
| GGCTCAGGCAGCATTTCCTC+TGG | 0.468683 | 1.2:-53529581 | None:intergenic |
| TTGCGGGTTCGCATCGGTGG+TGG | 0.469410 | 1.2:-53528233 | None:intergenic |
| AAGAATAGCAATGGAGGAAA+GGG | 0.469721 | 1.2:+53530467 | MS.gene50613:CDS |
| TGAAGGGAAAATCTGCTAGA+AGG | 0.477915 | 1.2:+53528345 | MS.gene50613:CDS |
| GTGATGCTCTTAAGGATTCA+GGG | 0.478740 | 1.2:-53530936 | None:intergenic |
| GAGTATACAGAAAGCAAAGA+TGG | 0.479585 | 1.2:+53530064 | MS.gene50613:CDS |
| TCATGCTTTGGACGACTGAA+TGG | 0.481298 | 1.2:-53529602 | None:intergenic |
| AAAGAATAGCAATGGAGGAA+AGG | 0.482688 | 1.2:+53530466 | MS.gene50613:CDS |
| GGAGTAGATACAAATTTAGC+TGG | 0.483928 | 1.2:-53530118 | None:intergenic |
| GAATCATGTTAAAGAGCTTA+GGG | 0.484737 | 1.2:-53530539 | None:intergenic |
| CCTCAAACTTGACTCTGAAA+CGG | 0.489617 | 1.2:-53529894 | None:intergenic |
| AACCAACTTGTCCGGCGAGC+TGG | 0.493098 | 1.2:-53530215 | None:intergenic |
| TGTACAAGAGGATCATGCTT+TGG | 0.499528 | 1.2:-53529614 | None:intergenic |
| TTTATACTAACATGAAGATC+CGG | 0.500484 | 1.2:-53528906 | None:intergenic |
| CCGCGGTTGCGGGTTCGCAT+CGG | 0.503017 | 1.2:-53528239 | None:intergenic |
| TTAAGCGCCCACCTCGTTCA+AGG | 0.503396 | 1.2:+53530236 | MS.gene50613:CDS |
| GATTGCTATTAAGAAGTTGT+TGG | 0.505832 | 1.2:+53528854 | MS.gene50613:CDS |
| CGCAGGATGAGCTTCACTAC+CGG | 0.508826 | 1.2:-53529975 | None:intergenic |
| TTCTTAGCTTGTGAGATAGC+TGG | 0.511965 | 1.2:-53530492 | None:intergenic |
| CTAAGTTGTTGTCTGAATCT+GGG | 0.523632 | 1.2:+53528952 | MS.gene50613:CDS |
| GTTGCAGGTATGAGAATTTG+GGG | 0.525927 | 1.2:+53528584 | MS.gene50613:intron |
| TTCTTAATAGCAATCGCCTC+AGG | 0.526378 | 1.2:-53528846 | None:intergenic |
| AATGAAATGACGTCGTTGAA+GGG | 0.529956 | 1.2:+53528329 | MS.gene50613:CDS |
| AAAAGAAAGAATAGCAATGG+AGG | 0.531135 | 1.2:+53530461 | MS.gene50613:CDS |
| AGGTGTAGCTAGTGTAACTC+TGG | 0.532203 | 1.2:-53530029 | None:intergenic |
| CCGTTCTGTTATCACAAAAG+AGG | 0.537384 | 1.2:+53530584 | MS.gene50613:CDS |
| TTTGGATCTGGTGTTGTGTG+AGG | 0.537780 | 1.2:-53528126 | None:intergenic |
| ATTCTGTAACCAACTCGGAT+GGG | 0.538377 | 1.2:-53529949 | None:intergenic |
| TCCCGAATGGATTTCTGAGA+AGG | 0.541497 | 1.2:+53530772 | MS.gene50613:CDS |
| TTTGGACGACTGAATGGCTC+AGG | 0.542814 | 1.2:-53529596 | None:intergenic |
| TCAACTGTGCCAAATGAGCA+TGG | 0.543850 | 1.2:-53528812 | None:intergenic |
| TCCGAAGAACCATGAATCGC+AGG | 0.545140 | 1.2:-53529992 | None:intergenic |
| GGGCGCTTAACCAACTTGTC+CGG | 0.545875 | 1.2:-53530223 | None:intergenic |
| TCTGAAACGGGCACAACTGA+GGG | 0.546157 | 1.2:-53529881 | None:intergenic |
| CGAGACTAGCATATCTCCAC+TGG | 0.546554 | 1.2:-53530801 | None:intergenic |
| TACCAGCTCGCCGGACAAGT+TGG | 0.547251 | 1.2:+53530213 | MS.gene50613:CDS |
| GCTTCAACTGATGTCTCAGC+GGG | 0.547713 | 1.2:-53529749 | None:intergenic |
| GGATATTAGAAAAGTTGCTA+AGG | 0.548634 | 1.2:+53528280 | MS.gene50613:CDS |
| GATGATTCATTGCTCTTCCG+AGG | 0.549354 | 1.2:-53528386 | None:intergenic |
| TAAAATATCCCCATCCGAGT+TGG | 0.552390 | 1.2:+53529940 | MS.gene50613:CDS |
| CGGTTGCGGGTTCGCATCGG+TGG | 0.552701 | 1.2:-53528236 | None:intergenic |
| CCGAATGGAGAAGATTATCC+GGG | 0.552846 | 1.2:-53530339 | None:intergenic |
| GGCATATGAGAGGCAACTGC+CGG | 0.557157 | 1.2:-53529785 | None:intergenic |
| GATTCTGTAACCAACTCGGA+TGG | 0.559752 | 1.2:-53529950 | None:intergenic |
| TGTTAGAATTAGTTCCCGAA+TGG | 0.564240 | 1.2:+53530759 | MS.gene50613:CDS |
| TTCTGTAACCAACTCGGATG+GGG | 0.565800 | 1.2:-53529948 | None:intergenic |
| AACCGCCTTCTGAAAGATTG+AGG | 0.565829 | 1.2:-53529806 | None:intergenic |
| TGCCTCAATCTTTCAGAAGG+CGG | 0.566754 | 1.2:+53529804 | MS.gene50613:CDS |
| CTCTGAAACGGGCACAACTG+AGG | 0.566962 | 1.2:-53529882 | None:intergenic |
| TCAATGACCTTGAACGAGGT+GGG | 0.568176 | 1.2:-53530243 | None:intergenic |
| AAACGGGCACAACTGAGGGT+TGG | 0.571198 | 1.2:-53529877 | None:intergenic |
| TTCAATGACCTTGAACGAGG+TGG | 0.577604 | 1.2:-53530244 | None:intergenic |
| AAATCACATTGGCTTCTCCT+CGG | 0.580298 | 1.2:+53528369 | MS.gene50613:CDS |
| TCTGAGAAGGCGGCCTCCAG+TGG | 0.580751 | 1.2:+53530785 | MS.gene50613:CDS |
| TGAAGCTCTTAACCAGAAGC+CGG | 0.583837 | 1.2:+53529766 | MS.gene50613:CDS |
| GATATTAGAAAAGTTGCTAA+GGG | 0.589889 | 1.2:+53528281 | MS.gene50613:CDS |
| CGACAACTCTACCAGCTCGC+CGG | 0.599025 | 1.2:+53530204 | MS.gene50613:CDS |
| ATATGCCTCAATCTTTCAGA+AGG | 0.600109 | 1.2:+53529801 | MS.gene50613:CDS |
| AATTTGTATCTACTCCAGCC+AGG | 0.603332 | 1.2:+53530125 | MS.gene50613:CDS |
| CTATCTCACAAGCTAAGAAG+CGG | 0.603356 | 1.2:+53530496 | MS.gene50613:CDS |
| GAGTTGGTTACAGAATCATC+CGG | 0.603380 | 1.2:+53529956 | MS.gene50613:CDS |
| TGCTAGAAGGCAAATCACAT+TGG | 0.603766 | 1.2:+53528358 | MS.gene50613:CDS |
| CATGACTTTCTGAGTTAGCA+GGG | 0.605336 | 1.2:-53529718 | None:intergenic |
| TGGAGTTGACATAGCATCAA+CGG | 0.606325 | 1.2:-53530098 | None:intergenic |
| AGTATACAGAAAGCAAAGAT+GGG | 0.606980 | 1.2:+53530065 | MS.gene50613:CDS |
| AGGTGTAGCTGACATCAGCC+TGG | 0.607269 | 1.2:-53530143 | None:intergenic |
| GGTTTCATCATGTGTACAAG+AGG | 0.610647 | 1.2:-53529626 | None:intergenic |
| CATCAAACTCAACTGCATCA+GGG | 0.610741 | 1.2:-53528929 | None:intergenic |
| ACACTATCATACCTCTGGGT+GGG | 0.612575 | 1.2:-53529027 | None:intergenic |
| CAACTGTGCCAAATGAGCAT+GGG | 0.612717 | 1.2:-53528811 | None:intergenic |
| GCGAACGAGTTGTATGAAGC+CGG | 0.612998 | 1.2:+53528887 | MS.gene50613:CDS |
| TTCACTGCAGAGAATGATGA+GGG | 0.616272 | 1.2:-53529650 | None:intergenic |
| CCGATGCGAACCCGCAACCG+CGG | 0.620178 | 1.2:+53528239 | MS.gene50613:CDS |
| CGAATGGATTTCTGAGAAGG+CGG | 0.621345 | 1.2:+53530775 | MS.gene50613:CDS |
| TACTTCTATCAACAATATCA+CGG | 0.628510 | 1.2:-53530635 | None:intergenic |
| TTTCACTGCAGAGAATGATG+AGG | 0.630337 | 1.2:-53529651 | None:intergenic |
| CACACTATCATACCTCTGGG+TGG | 0.639190 | 1.2:-53529028 | None:intergenic |
| GTAGCTAGTGTAACTCTGGA+TGG | 0.641322 | 1.2:-53530025 | None:intergenic |
| GCTGGTAGAGTTGTCGTCTG+GGG | 0.645341 | 1.2:-53530197 | None:intergenic |
| GAGGATAAATTCCACCTCTG+AGG | 0.652789 | 1.2:+53529913 | MS.gene50613:CDS |
| AATTTCAATGACCTTGAACG+AGG | 0.653533 | 1.2:-53530247 | None:intergenic |
| TTGCAGGTATGAGAATTTGG+GGG | 0.655048 | 1.2:+53528585 | MS.gene50613:intron |
| GGATGATTCTGTAACCAACT+CGG | 0.657748 | 1.2:-53529954 | None:intergenic |
| AGCTTCAACTGATGTCTCAG+CGG | 0.660010 | 1.2:-53529750 | None:intergenic |
| GACTAGCATATCTCCACTGG+AGG | 0.665848 | 1.2:-53530798 | None:intergenic |
| ACTGCAGAGAATGATGAGGG+AGG | 0.673341 | 1.2:-53529647 | None:intergenic |
| TGGAATGAATCAGATTGAAG+TGG | 0.676752 | 1.2:-53529857 | None:intergenic |
| AATCTGGGACTATGTCTCTG+AGG | 0.683217 | 1.2:+53528967 | MS.gene50613:CDS |
| GAAAGATTGAGGCATATGAG+AGG | 0.683357 | 1.2:-53529795 | None:intergenic |
| ATAGGCTGATGAAGTTCCAG+AGG | 0.688686 | 1.2:+53529565 | MS.gene50613:intron |
| GTGTTGTGTGAGGATTGTGA+AGG | 0.688886 | 1.2:-53528116 | None:intergenic |
| ATATCGAAAGCGCAACGCCG+CGG | 0.697463 | 1.2:-53528256 | None:intergenic |
| ACGTGCTTCTAGTGACATTG+TGG | 0.700767 | 1.2:+53529685 | MS.gene50613:CDS |
| AATGGAGAAGATTATCCGGG+AGG | 0.714359 | 1.2:-53530336 | None:intergenic |
| TCATGTTAAAGAGCTTAGGG+AGG | 0.717982 | 1.2:-53530536 | None:intergenic |
| TTCTATCAACAATATCACGG+TGG | 0.721589 | 1.2:-53530632 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCAAAAATTTGTATTT+AGG | + | chr1.2:53528743-53528762 | MS.gene50613:intron | 10.0% |
| !!! | TTTTTGTTGATTTATTTTAT+GGG | + | chr1.2:53528553-53528572 | MS.gene50613:intron | 10.0% |
| !!! | TTTTTTGTTGATTTATTTTA+TGG | + | chr1.2:53528552-53528571 | MS.gene50613:intron | 10.0% |
| !! | AATAATATGCAATTTCTAAA+AGG | - | chr1.2:53529522-53529541 | None:intergenic | 15.0% |
| !! | TCACTCATAAAAATAAATAA+AGG | - | chr1.2:53530405-53530424 | None:intergenic | 15.0% |
| !! | AATATAATCAATACAATGAC+AGG | - | chr1.2:53530880-53530899 | None:intergenic | 20.0% |
| !! | ATATAATCAATACAATGACA+GGG | - | chr1.2:53530879-53530898 | None:intergenic | 20.0% |
| !!! | ATTTTGAATTTTCAGATCTA+GGG | + | chr1.2:53528430-53528449 | MS.gene50613:intron | 20.0% |
| !!! | TAAATGATGCTTTTATGTAT+AGG | + | chr1.2:53529547-53529566 | MS.gene50613:intron | 20.0% |
| !!! | TAGTTTTGCATTTTATTTGT+GGG | + | chr1.2:53529157-53529176 | MS.gene50613:intron | 20.0% |
| !!! | TCTTAAGCATTTTGAAATTT+TGG | + | chr1.2:53528505-53528524 | MS.gene50613:intron | 20.0% |
| !!! | TTTTTATGATTTGTTTGATG+TGG | + | chr1.2:53528472-53528491 | MS.gene50613:intron | 20.0% |
| ! | AAACCAATCAACATAATAAG+TGG | - | chr1.2:53529215-53529234 | None:intergenic | 25.0% |
| ! | ACAAGAGAAATTTCATACAT+TGG | + | chr1.2:53529180-53529199 | MS.gene50613:intron | 25.0% |
| ! | AGATTGAAACTTTAACTGAT+AGG | + | chr1.2:53528689-53528708 | MS.gene50613:CDS | 25.0% |
| ! | ATGAAAAATGAAAATGATGC+TGG | + | chr1.2:53530280-53530299 | MS.gene50613:CDS | 25.0% |
| ! | ATTAGATTGTTGCGATTAAA+AGG | + | chr1.2:53528634-53528653 | MS.gene50613:CDS | 25.0% |
| ! | GATATTAGAAAAGTTGCTAA+GGG | + | chr1.2:53528281-53528300 | MS.gene50613:CDS | 25.0% |
| ! | TAATGCTAATTCTGAGTAAA+AGG | + | chr1.2:53529366-53529385 | MS.gene50613:intron | 25.0% |
| ! | TACTTCTATCAACAATATCA+CGG | - | chr1.2:53530638-53530657 | None:intergenic | 25.0% |
| ! | TCAGTTAAAGTTTCAATCTT+TGG | - | chr1.2:53528688-53528707 | None:intergenic | 25.0% |
| ! | TCTCTATGAAACATAATTGA+CGG | + | chr1.2:53530665-53530684 | MS.gene50613:intron | 25.0% |
| ! | TGAAAGTAACTTAAAGTCTA+AGG | + | chr1.2:53529426-53529445 | MS.gene50613:intron | 25.0% |
| ! | TGGAATTGTAAATTCATAAC+AGG | - | chr1.2:53530852-53530871 | None:intergenic | 25.0% |
| ! | TTTATACTAACATGAAGATC+CGG | - | chr1.2:53528909-53528928 | None:intergenic | 25.0% |
| !! | AAATTTTGGATCTAGGTTTT+TGG | + | chr1.2:53528519-53528538 | MS.gene50613:intron | 25.0% |
| !! | ACTTATTATGTTGATTGGTT+TGG | + | chr1.2:53529214-53529233 | MS.gene50613:intron | 25.0% |
| !! | ATGATGTTAACTTTTGATGA+TGG | + | chr1.2:53529466-53529485 | MS.gene50613:intron | 25.0% |
| !! | CATTTTGAATTTTCAGATCT+AGG | + | chr1.2:53528429-53528448 | MS.gene50613:intron | 25.0% |
| !! | TTGATATTTCATTTTGCTTG+TGG | + | chr1.2:53529107-53529126 | MS.gene50613:intron | 25.0% |
| !!! | AGGATTTTTTTTCTGATTGT+GGG | + | chr1.2:53528763-53528782 | MS.gene50613:intron | 25.0% |
| !!! | ATTCAAAATGCTTACTTTTC+AGG | - | chr1.2:53528419-53528438 | None:intergenic | 25.0% |
| !!! | CATTTTGAAATTTTGGATCT+AGG | + | chr1.2:53528512-53528531 | MS.gene50613:intron | 25.0% |
| !!! | CTAGTTTTGCATTTTATTTG+TGG | + | chr1.2:53529156-53529175 | MS.gene50613:intron | 25.0% |
| !!! | GCATCATTTTCATTTTTCAT+AGG | - | chr1.2:53530280-53530299 | None:intergenic | 25.0% |
| !!! | TAGGATTTTTTTTCTGATTG+TGG | + | chr1.2:53528762-53528781 | MS.gene50613:intron | 25.0% |
| !!! | TGATGTTAACTTTTGATGAT+GGG | + | chr1.2:53529467-53529486 | MS.gene50613:intron | 25.0% |
| AAAAATGAAAATGATGCTGG+CGG | + | chr1.2:53530283-53530302 | MS.gene50613:CDS | 30.0% | |
| AAAAGAAAGAATAGCAATGG+AGG | + | chr1.2:53530461-53530480 | MS.gene50613:CDS | 30.0% | |
| AACTTCACCTAAGAAAACAA+GGG | - | chr1.2:53530720-53530739 | None:intergenic | 30.0% | |
| AGTATACAGAAAGCAAAGAT+GGG | + | chr1.2:53530065-53530084 | MS.gene50613:CDS | 30.0% | |
| CTCTATGAAACATAATTGAC+GGG | + | chr1.2:53530666-53530685 | MS.gene50613:intron | 30.0% | |
| GAATCATGTTAAAGAGCTTA+GGG | - | chr1.2:53530542-53530561 | None:intergenic | 30.0% | |
| GAGAAATTTCATACATTGGT+TGG | + | chr1.2:53529184-53529203 | MS.gene50613:intron | 30.0% | |
| GGAAAAAGAAAGAATAGCAA+TGG | + | chr1.2:53530458-53530477 | MS.gene50613:CDS | 30.0% | |
| GGATATTAGAAAAGTTGCTA+AGG | + | chr1.2:53528280-53528299 | MS.gene50613:CDS | 30.0% | |
| GTTCCACTTATTATGTTGAT+TGG | + | chr1.2:53529209-53529228 | MS.gene50613:intron | 30.0% | |
| TGAATCATGTTAAAGAGCTT+AGG | - | chr1.2:53530543-53530562 | None:intergenic | 30.0% | |
| TTTGCTTTCTGTATACTCAA+TGG | - | chr1.2:53530062-53530081 | None:intergenic | 30.0% | |
| ! | AAATTTCATACATTGGTTGG+TGG | + | chr1.2:53529187-53529206 | MS.gene50613:intron | 30.0% |
| ! | GATTGCTATTAAGAAGTTGT+TGG | + | chr1.2:53528854-53528873 | MS.gene50613:CDS | 30.0% |
| ! | GCGGTTTTCTCAAAAATTAA+AGG | + | chr1.2:53529823-53529842 | MS.gene50613:CDS | 30.0% |
| ! | GTCATAAAACTTCTTTTAGG+TGG | - | chr1.2:53530178-53530197 | None:intergenic | 30.0% |
| ! | TTGTCACTATGAGATTTTGA+TGG | + | chr1.2:53529301-53529320 | MS.gene50613:intron | 30.0% |
| !! | ATTTTCAGATCTAGGGTTTT+TGG | + | chr1.2:53528437-53528456 | MS.gene50613:intron | 30.0% |
| !!! | GTTGAAGTTTATTTTACCTG+AGG | + | chr1.2:53528830-53528849 | MS.gene50613:CDS | 30.0% |
| !!! | GTTTTTGAGGTTAGTTCAAT+TGG | - | chr1.2:53528191-53528210 | None:intergenic | 30.0% |
| !!! | TTATGGGTTTTTTTTGTTGC+AGG | + | chr1.2:53528569-53528588 | MS.gene50613:intron | 30.0% |
| !!! | TTTTTTTCTGATTGTGGGTT+TGG | + | chr1.2:53528768-53528787 | MS.gene50613:intron | 30.0% |
| AAAAACCCCAGAAAAATCAC+TGG | + | chr1.2:53528205-53528224 | MS.gene50613:CDS | 35.0% | |
| AAAGAATAGCAATGGAGGAA+AGG | + | chr1.2:53530466-53530485 | MS.gene50613:CDS | 35.0% | |
| AAGAATAGCAATGGAGGAAA+GGG | + | chr1.2:53530467-53530486 | MS.gene50613:CDS | 35.0% | |
| AATGAAATGACGTCGTTGAA+GGG | + | chr1.2:53528329-53528348 | MS.gene50613:CDS | 35.0% | |
| AATTTCAATGACCTTGAACG+AGG | - | chr1.2:53530250-53530269 | None:intergenic | 35.0% | |
| ACTTCACCTAAGAAAACAAG+GGG | - | chr1.2:53530719-53530738 | None:intergenic | 35.0% | |
| ATATGCCTCAATCTTTCAGA+AGG | + | chr1.2:53529801-53529820 | MS.gene50613:CDS | 35.0% | |
| CAACTTCACCTAAGAAAACA+AGG | - | chr1.2:53530721-53530740 | None:intergenic | 35.0% | |
| CTAAGTTGTTGTCTGAATCT+GGG | + | chr1.2:53528952-53528971 | MS.gene50613:CDS | 35.0% | |
| GAGTATACAGAAAGCAAAGA+TGG | + | chr1.2:53530064-53530083 | MS.gene50613:CDS | 35.0% | |
| GGAGTAGATACAAATTTAGC+TGG | - | chr1.2:53530121-53530140 | None:intergenic | 35.0% | |
| GTTTGGTAGAAAGAATAGTC+AGG | + | chr1.2:53529231-53529250 | MS.gene50613:intron | 35.0% | |
| TGGAATGAATCAGATTGAAG+TGG | - | chr1.2:53529860-53529879 | None:intergenic | 35.0% | |
| TGTTAGAATTAGTTCCCGAA+TGG | + | chr1.2:53530759-53530778 | MS.gene50613:CDS | 35.0% | |
| TGTTGCAGGTATGAGAATTT+GGG | + | chr1.2:53528583-53528602 | MS.gene50613:intron | 35.0% | |
| TTCTATCAACAATATCACGG+TGG | - | chr1.2:53530635-53530654 | None:intergenic | 35.0% | |
| TTCTTCAAGTGATGCTCTTA+AGG | - | chr1.2:53530947-53530966 | None:intergenic | 35.0% | |
| TTGTTGCAGGTATGAGAATT+TGG | + | chr1.2:53528582-53528601 | MS.gene50613:intron | 35.0% | |
| ! | AAACAAAAGAGCATACCGAA+TGG | - | chr1.2:53530357-53530376 | None:intergenic | 35.0% |
| ! | AGATTTTGAGCTACGAAGAT+TGG | - | chr1.2:53528156-53528175 | None:intergenic | 35.0% |
| ! | CCTCTTTTGTGATAACAGAA+CGG | - | chr1.2:53530587-53530606 | None:intergenic | 35.0% |
| ! | GATTTTGAGCTACGAAGATT+GGG | - | chr1.2:53528155-53528174 | None:intergenic | 35.0% |
| ! | GGGGTCATAAAACTTCTTTT+AGG | - | chr1.2:53530181-53530200 | None:intergenic | 35.0% |
| ! | TGACATTTTTGATATCCTCC+CGG | + | chr1.2:53530321-53530340 | MS.gene50613:CDS | 35.0% |
| !! | GTATACTCAATGGTTTTGCT+AGG | - | chr1.2:53530052-53530071 | None:intergenic | 35.0% |
| !!! | AAGATTGGGTTTTTTGGATC+TGG | - | chr1.2:53528141-53528160 | None:intergenic | 35.0% |
| !!! | ACTAAACCCCTTGTTTTCTT+AGG | + | chr1.2:53530710-53530729 | MS.gene50613:intron | 35.0% |
| !!! | TAACTTTTGATGATGGGTTG+AGG | + | chr1.2:53529473-53529492 | MS.gene50613:intron | 35.0% |
| !!! | TGATTTTTCTGGGGTTTTTG+AGG | - | chr1.2:53528204-53528223 | None:intergenic | 35.0% |
| AAAGAATAGTCAGGTGTGGT+GGG | + | chr1.2:53529240-53529259 | MS.gene50613:intron | 40.0% | |
| AATTTGTATCTACTCCAGCC+AGG | + | chr1.2:53530125-53530144 | MS.gene50613:CDS | 40.0% | |
| ACATGACTTTCTGAGTTAGC+AGG | - | chr1.2:53529722-53529741 | None:intergenic | 40.0% | |
| ACCGAATGGAGAAGATTATC+CGG | - | chr1.2:53530343-53530362 | None:intergenic | 40.0% | |
| AGTGATGCTCTTAAGGATTC+AGG | - | chr1.2:53530940-53530959 | None:intergenic | 40.0% | |
| ATGCACACTATCATACCTCT+GGG | - | chr1.2:53529034-53529053 | None:intergenic | 40.0% | |
| ATTCTGTAACCAACTCGGAT+GGG | - | chr1.2:53529952-53529971 | None:intergenic | 40.0% | |
| CAATACAATGACAGGGTTGT+TGG | - | chr1.2:53530872-53530891 | None:intergenic | 40.0% | |
| CAATGAAATGACGTCGTTGA+AGG | + | chr1.2:53528328-53528347 | MS.gene50613:CDS | 40.0% | |
| CATCAAACTCAACTGCATCA+GGG | - | chr1.2:53528932-53528951 | None:intergenic | 40.0% | |
| CATGACTTTCTGAGTTAGCA+GGG | - | chr1.2:53529721-53529740 | None:intergenic | 40.0% | |
| CCGTTCTGTTATCACAAAAG+AGG | + | chr1.2:53530584-53530603 | MS.gene50613:CDS | 40.0% | |
| CTATCTCACAAGCTAAGAAG+CGG | + | chr1.2:53530496-53530515 | MS.gene50613:CDS | 40.0% | |
| GAAAGATTGAGGCATATGAG+AGG | - | chr1.2:53529798-53529817 | None:intergenic | 40.0% | |
| GCTAAGTTGTTGTCTGAATC+TGG | + | chr1.2:53528951-53528970 | MS.gene50613:CDS | 40.0% | |
| GGATGATTCTGTAACCAACT+CGG | - | chr1.2:53529957-53529976 | None:intergenic | 40.0% | |
| GGTTTCATCATGTGTACAAG+AGG | - | chr1.2:53529629-53529648 | None:intergenic | 40.0% | |
| GTAGAAAGAATAGTCAGGTG+TGG | + | chr1.2:53529236-53529255 | MS.gene50613:intron | 40.0% | |
| GTGATGCTCTTAAGGATTCA+GGG | - | chr1.2:53530939-53530958 | None:intergenic | 40.0% | |
| GTTGCAGGTATGAGAATTTG+GGG | + | chr1.2:53528584-53528603 | MS.gene50613:intron | 40.0% | |
| TAAAATATCCCCATCCGAGT+TGG | + | chr1.2:53529940-53529959 | MS.gene50613:CDS | 40.0% | |
| TCATGTTAAAGAGCTTAGGG+AGG | - | chr1.2:53530539-53530558 | None:intergenic | 40.0% | |
| TGAAGGGAAAATCTGCTAGA+AGG | + | chr1.2:53528345-53528364 | MS.gene50613:CDS | 40.0% | |
| TGCTAGAAGGCAAATCACAT+TGG | + | chr1.2:53528358-53528377 | MS.gene50613:CDS | 40.0% | |
| TGGAGTTGACATAGCATCAA+CGG | - | chr1.2:53530101-53530120 | None:intergenic | 40.0% | |
| TGTACAAGAGGATCATGCTT+TGG | - | chr1.2:53529617-53529636 | None:intergenic | 40.0% | |
| TTCACTGCAGAGAATGATGA+GGG | - | chr1.2:53529653-53529672 | None:intergenic | 40.0% | |
| TTCTTAATAGCAATCGCCTC+AGG | - | chr1.2:53528849-53528868 | None:intergenic | 40.0% | |
| TTGCAGGTATGAGAATTTGG+GGG | + | chr1.2:53528585-53528604 | MS.gene50613:intron | 40.0% | |
| TTTCACTGCAGAGAATGATG+AGG | - | chr1.2:53529654-53529673 | None:intergenic | 40.0% | |
| ! | AACTCGGATGGGGATATTTT+AGG | - | chr1.2:53529941-53529960 | None:intergenic | 40.0% |
| ! | ACTCGGATGGGGATATTTTA+GGG | - | chr1.2:53529940-53529959 | None:intergenic | 40.0% |
| ! | CCTCAAACTTGACTCTGAAA+CGG | - | chr1.2:53529897-53529916 | None:intergenic | 40.0% |
| ! | CTTCTCCAGTGATTTTTCTG+GGG | - | chr1.2:53528213-53528232 | None:intergenic | 40.0% |
| ! | CTTTTTCCTGAATCTGCAGA+AGG | - | chr1.2:53530446-53530465 | None:intergenic | 40.0% |
| ! | GAGTTGGTTACAGAATCATC+CGG | + | chr1.2:53529956-53529975 | MS.gene50613:CDS | 40.0% |
| ! | GCTTCTCCAGTGATTTTTCT+GGG | - | chr1.2:53528214-53528233 | None:intergenic | 40.0% |
| ! | GTGGGTTTGGATGAGTTTTT+AGG | + | chr1.2:53528781-53528800 | MS.gene50613:intron | 40.0% |
| !! | AAATCACATTGGCTTCTCCT+CGG | + | chr1.2:53528369-53528388 | MS.gene50613:CDS | 40.0% |
| !! | CATAGCATCAACGGTTTTGA+AGG | - | chr1.2:53530092-53530111 | None:intergenic | 40.0% |
| !! | CTCAAACTTGACTCTGAAAC+GGG | - | chr1.2:53529896-53529915 | None:intergenic | 40.0% |
| !! | GGTTTGGATGAGTTTTTAGG+AGG | + | chr1.2:53528784-53528803 | MS.gene50613:intron | 40.0% |
| !! | TTCTTAGCTTGTGAGATAGC+TGG | - | chr1.2:53530495-53530514 | None:intergenic | 40.0% |
| !!! | GCTACGAAGATTGGGTTTTT+TGG | - | chr1.2:53528147-53528166 | None:intergenic | 40.0% |
| AATGGAGAAGATTATCCGGG+AGG | - | chr1.2:53530339-53530358 | None:intergenic | 45.0% | |
| ACACTATCATACCTCTGGGT+GGG | - | chr1.2:53529030-53529049 | None:intergenic | 45.0% | |
| ACCATTCCTTCTGCAGATTC+AGG | + | chr1.2:53530437-53530456 | MS.gene50613:intron | 45.0% | |
| ACGTGCTTCTAGTGACATTG+TGG | + | chr1.2:53529685-53529704 | MS.gene50613:CDS | 45.0% | |
| AGCTTCAACTGATGTCTCAG+CGG | - | chr1.2:53529753-53529772 | None:intergenic | 45.0% | |
| AGGTGTAGCTAGTGTAACTC+TGG | - | chr1.2:53530032-53530051 | None:intergenic | 45.0% | |
| ATAGGCTGATGAAGTTCCAG+AGG | + | chr1.2:53529565-53529584 | MS.gene50613:intron | 45.0% | |
| CAACTGTGCCAAATGAGCAT+GGG | - | chr1.2:53528814-53528833 | None:intergenic | 45.0% | |
| CATGCACACTATCATACCTC+TGG | - | chr1.2:53529035-53529054 | None:intergenic | 45.0% | |
| CCCGGATAATCTTCTCCATT+CGG | + | chr1.2:53530339-53530358 | MS.gene50613:CDS | 45.0% | |
| CCGAATGGAGAAGATTATCC+GGG | - | chr1.2:53530342-53530361 | None:intergenic | 45.0% | |
| CCGTTTCAGAGTCAAGTTTG+AGG | + | chr1.2:53529894-53529913 | MS.gene50613:CDS | 45.0% | |
| CGCCTTCTCAGAAATCCATT+CGG | - | chr1.2:53530777-53530796 | None:intergenic | 45.0% | |
| GAAAGAATAGTCAGGTGTGG+TGG | + | chr1.2:53529239-53529258 | MS.gene50613:intron | 45.0% | |
| GAGGATAAATTCCACCTCTG+AGG | + | chr1.2:53529913-53529932 | MS.gene50613:CDS | 45.0% | |
| GAGGTTTACCCATGCTCATT+TGG | + | chr1.2:53528803-53528822 | MS.gene50613:CDS | 45.0% | |
| GAGTAAAAGGCCAAGTCTGT+GGG | + | chr1.2:53529379-53529398 | MS.gene50613:intron | 45.0% | |
| GATGATTCATTGCTCTTCCG+AGG | - | chr1.2:53528389-53528408 | None:intergenic | 45.0% | |
| GATTCTGTAACCAACTCGGA+TGG | - | chr1.2:53529953-53529972 | None:intergenic | 45.0% | |
| GCATCAAACTCAACTGCATC+AGG | - | chr1.2:53528933-53528952 | None:intergenic | 45.0% | |
| GCCTTCTCAGAAATCCATTC+GGG | - | chr1.2:53530776-53530795 | None:intergenic | 45.0% | |
| GTAGCTAGTGTAACTCTGGA+TGG | - | chr1.2:53530028-53530047 | None:intergenic | 45.0% | |
| GTGTTGTGTGAGGATTGTGA+AGG | - | chr1.2:53528119-53528138 | None:intergenic | 45.0% | |
| TCAACTGTGCCAAATGAGCA+TGG | - | chr1.2:53528815-53528834 | None:intergenic | 45.0% | |
| TCAATGACCTTGAACGAGGT+GGG | - | chr1.2:53530246-53530265 | None:intergenic | 45.0% | |
| TCCTGAATCTGCAGAAGGAA+TGG | - | chr1.2:53530441-53530460 | None:intergenic | 45.0% | |
| TCCTGCGATTCATGGTTCTT+CGG | + | chr1.2:53529991-53530010 | MS.gene50613:CDS | 45.0% | |
| TGAAGCTCTTAACCAGAAGC+CGG | + | chr1.2:53529766-53529785 | MS.gene50613:CDS | 45.0% | |
| TGAGTAAAAGGCCAAGTCTG+TGG | + | chr1.2:53529378-53529397 | MS.gene50613:intron | 45.0% | |
| TGCCTCAATCTTTCAGAAGG+CGG | + | chr1.2:53529804-53529823 | MS.gene50613:CDS | 45.0% | |
| TTCAATGACCTTGAACGAGG+TGG | - | chr1.2:53530247-53530266 | None:intergenic | 45.0% | |
| TTCTGTAACCAACTCGGATG+GGG | - | chr1.2:53529951-53529970 | None:intergenic | 45.0% | |
| ! | AACAAAGTGTCCCACAGACT+TGG | - | chr1.2:53529392-53529411 | None:intergenic | 45.0% |
| ! | AACCGCCTTCTGAAAGATTG+AGG | - | chr1.2:53529809-53529828 | None:intergenic | 45.0% |
| ! | AATCTGGGACTATGTCTCTG+AGG | + | chr1.2:53528967-53528986 | MS.gene50613:CDS | 45.0% |
| ! | CGAATGGATTTCTGAGAAGG+CGG | + | chr1.2:53530775-53530794 | MS.gene50613:CDS | 45.0% |
| ! | GGCTTCTCCAGTGATTTTTC+TGG | - | chr1.2:53528215-53528234 | None:intergenic | 45.0% |
| ! | TCATGCTTTGGACGACTGAA+TGG | - | chr1.2:53529605-53529624 | None:intergenic | 45.0% |
| ! | TCCCGAATGGATTTCTGAGA+AGG | + | chr1.2:53530772-53530791 | MS.gene50613:CDS | 45.0% |
| !! | CTTTTAGGTGGCTTCAATGC+AGG | - | chr1.2:53530166-53530185 | None:intergenic | 45.0% |
| !! | GGATATTTTAGGGACCTCAG+AGG | - | chr1.2:53529930-53529949 | None:intergenic | 45.0% |
| !! | TATTTTAGGGACCTCAGAGG+TGG | - | chr1.2:53529927-53529946 | None:intergenic | 45.0% |
| !! | TTTGGATCTGGTGTTGTGTG+AGG | - | chr1.2:53528129-53528148 | None:intergenic | 45.0% |
| !!! | GGGGGAGTTTTTTGATAGCT+TGG | + | chr1.2:53528603-53528622 | MS.gene50613:CDS | 45.0% |
| ACTGCAGAGAATGATGAGGG+AGG | - | chr1.2:53529650-53529669 | None:intergenic | 50.0% | |
| AGCTGGTAGAGTTGTCGTCT+GGG | - | chr1.2:53530201-53530220 | None:intergenic | 50.0% | |
| CACACTATCATACCTCTGGG+TGG | - | chr1.2:53529031-53529050 | None:intergenic | 50.0% | |
| CGAGACTAGCATATCTCCAC+TGG | - | chr1.2:53530804-53530823 | None:intergenic | 50.0% | |
| GAAGCTCATCCTGCGATTCA+TGG | + | chr1.2:53529983-53530002 | MS.gene50613:CDS | 50.0% | |
| GACTAGCATATCTCCACTGG+AGG | - | chr1.2:53530801-53530820 | None:intergenic | 50.0% | |
| GCGAACGAGTTGTATGAAGC+CGG | + | chr1.2:53528887-53528906 | MS.gene50613:CDS | 50.0% | |
| GCTTCAACTGATGTCTCAGC+GGG | - | chr1.2:53529752-53529771 | None:intergenic | 50.0% | |
| GTTAAAGAGCTTAGGGAGGC+TGG | - | chr1.2:53530535-53530554 | None:intergenic | 50.0% | |
| TCCGAAGAACCATGAATCGC+AGG | - | chr1.2:53529995-53530014 | None:intergenic | 50.0% | |
| TTTGGACGACTGAATGGCTC+AGG | - | chr1.2:53529599-53529618 | None:intergenic | 50.0% | |
| ! | GTGCGCGACTCAATGAGTTT+TGG | + | chr1.2:53529000-53529019 | MS.gene50613:CDS | 50.0% |
| ! | TCTGAAACGGGCACAACTGA+GGG | - | chr1.2:53529884-53529903 | None:intergenic | 50.0% |
| !!! | GTTTTGGAAATCCCACCCAG+AGG | + | chr1.2:53529016-53529035 | MS.gene50613:CDS | 50.0% |
| AAACGGGCACAACTGAGGGT+TGG | - | chr1.2:53529880-53529899 | None:intergenic | 55.0% | |
| AGGTGTAGCTGACATCAGCC+TGG | - | chr1.2:53530146-53530165 | None:intergenic | 55.0% | |
| CGCAGGATGAGCTTCACTAC+CGG | - | chr1.2:53529978-53529997 | None:intergenic | 55.0% | |
| CGGCGTTGCGCTTTCGATAT+CGG | + | chr1.2:53528259-53528278 | MS.gene50613:CDS | 55.0% | |
| GAGCTGGTAGAGTTGTCGTC+TGG | - | chr1.2:53530202-53530221 | None:intergenic | 55.0% | |
| GCTGGTAGAGTTGTCGTCTG+GGG | - | chr1.2:53530200-53530219 | None:intergenic | 55.0% | |
| GGCATATGAGAGGCAACTGC+CGG | - | chr1.2:53529788-53529807 | None:intergenic | 55.0% | |
| GGGCGCTTAACCAACTTGTC+CGG | - | chr1.2:53530226-53530245 | None:intergenic | 55.0% | |
| TTAAGCGCCCACCTCGTTCA+AGG | + | chr1.2:53530236-53530255 | MS.gene50613:CDS | 55.0% | |
| ! | ATATCGAAAGCGCAACGCCG+CGG | - | chr1.2:53528259-53528278 | None:intergenic | 55.0% |
| !! | CTCTGAAACGGGCACAACTG+AGG | - | chr1.2:53529885-53529904 | None:intergenic | 55.0% |
| AACCAACTTGTCCGGCGAGC+TGG | - | chr1.2:53530218-53530237 | None:intergenic | 60.0% | |
| CGACAACTCTACCAGCTCGC+CGG | + | chr1.2:53530204-53530223 | MS.gene50613:CDS | 60.0% | |
| GGCTCAGGCAGCATTTCCTC+TGG | - | chr1.2:53529584-53529603 | None:intergenic | 60.0% | |
| GTAGCTGACATCAGCCTGGC+TGG | - | chr1.2:53530142-53530161 | None:intergenic | 60.0% | |
| TACCAGCTCGCCGGACAAGT+TGG | + | chr1.2:53530213-53530232 | MS.gene50613:CDS | 60.0% | |
| AAAGCGCAACGCCGCGGTTG+CGG | - | chr1.2:53528253-53528272 | None:intergenic | 65.0% | |
| TCTGAGAAGGCGGCCTCCAG+TGG | + | chr1.2:53530785-53530804 | MS.gene50613:CDS | 65.0% | |
| ! | TTGCGGGTTCGCATCGGTGG+TGG | - | chr1.2:53528236-53528255 | None:intergenic | 65.0% |
| !! | GAGAGGCAACTGCCGGCTTC+TGG | - | chr1.2:53529781-53529800 | None:intergenic | 65.0% |
| AAGCGCAACGCCGCGGTTGC+GGG | - | chr1.2:53528252-53528271 | None:intergenic | 70.0% | |
| CCGATGCGAACCCGCAACCG+CGG | + | chr1.2:53528239-53528258 | MS.gene50613:CDS | 70.0% | |
| CCGCGGTTGCGGGTTCGCAT+CGG | - | chr1.2:53528242-53528261 | None:intergenic | 70.0% | |
| CGGTTGCGGGTTCGCATCGG+TGG | - | chr1.2:53528239-53528258 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 53528095 | 53530975 | 53528095 | ID=MS.gene50613 |
| chr1.2 | mRNA | 53528095 | 53530975 | 53528095 | ID=MS.gene50613.t1;Parent=MS.gene50613 |
| chr1.2 | exon | 53528095 | 53528423 | 53528095 | ID=MS.gene50613.t1.exon1;Parent=MS.gene50613.t1 |
| chr1.2 | CDS | 53528095 | 53528423 | 53528095 | ID=cds.MS.gene50613.t1;Parent=MS.gene50613.t1 |
| chr1.2 | exon | 53528591 | 53528710 | 53528591 | ID=MS.gene50613.t1.exon2;Parent=MS.gene50613.t1 |
| chr1.2 | CDS | 53528591 | 53528710 | 53528591 | ID=cds.MS.gene50613.t1;Parent=MS.gene50613.t1 |
| chr1.2 | exon | 53528803 | 53529037 | 53528803 | ID=MS.gene50613.t1.exon3;Parent=MS.gene50613.t1 |
| chr1.2 | CDS | 53528803 | 53529037 | 53528803 | ID=cds.MS.gene50613.t1;Parent=MS.gene50613.t1 |
| chr1.2 | exon | 53529569 | 53530360 | 53529569 | ID=MS.gene50613.t1.exon4;Parent=MS.gene50613.t1 |
| chr1.2 | CDS | 53529569 | 53530360 | 53529569 | ID=cds.MS.gene50613.t1;Parent=MS.gene50613.t1 |
| chr1.2 | exon | 53530453 | 53530654 | 53530453 | ID=MS.gene50613.t1.exon5;Parent=MS.gene50613.t1 |
| chr1.2 | CDS | 53530453 | 53530654 | 53530453 | ID=cds.MS.gene50613.t1;Parent=MS.gene50613.t1 |
| chr1.2 | exon | 53530732 | 53530822 | 53530732 | ID=MS.gene50613.t1.exon6;Parent=MS.gene50613.t1 |
| chr1.2 | CDS | 53530732 | 53530822 | 53530732 | ID=cds.MS.gene50613.t1;Parent=MS.gene50613.t1 |
| chr1.2 | exon | 53530918 | 53530975 | 53530918 | ID=MS.gene50613.t1.exon7;Parent=MS.gene50613.t1 |
| chr1.2 | CDS | 53530918 | 53530975 | 53530918 | ID=cds.MS.gene50613.t1;Parent=MS.gene50613.t1 |
| Gene Sequence |
| Protein sequence |
