AlfalfaGEDB | MS.gene50985

M. sativa cultivar XinJiangDaYe / MS.gene50985

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008168 GO:0016740 GO:0016741
PFAM: PF03141.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50985.t1	XP_013459454.1	98.3	606	10	0	1	606	1	606	0.00E+00	1273.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50985.t1	B9DFI7	69.8	616	173	5	1	604	1	615	2.1e-268	926.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50985.t1	A0A072V5N2	98.3	606	10	0	1	606	1	606	0.0e+00	1273.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050593	MS.gene50985	0.811477	6.86E-51	-1.69E-46
MS.gene050670	MS.gene50985	0.854376	1.28E-61	-1.69E-46
MS.gene051360	MS.gene50985	0.84457	6.96E-59	-1.69E-46
MS.gene051387	MS.gene50985	0.823878	1.09E-53	-1.69E-46
MS.gene051525	MS.gene50985	0.840996	6.21E-58	-1.69E-46
MS.gene051582	MS.gene50985	0.839948	1.17E-57	-1.69E-46
MS.gene051588	MS.gene50985	0.839488	1.54E-57	-1.69E-46
MS.gene052011	MS.gene50985	-0.833617	4.81E-56	-1.69E-46
MS.gene052134	MS.gene50985	0.829348	5.41E-55	-1.69E-46
MS.gene052135	MS.gene50985	0.838285	3.15E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene50985.t1	MTR_3g040370	98.350	606	10	0	1	606	1	606	1257
MS.gene50985.t1	MTR_8g055840	71.757	609	166	4	3	606	2	609	944
MS.gene50985.t1	MTR_5g040360	72.896	594	157	3	17	606	15	608	942
MS.gene50985.t1	MTR_4g098890	63.695	617	206	7	1	606	1	610	832
MS.gene50985.t1	MTR_8g100075	53.018	613	255	7	19	606	25	629	669
MS.gene50985.t1	MTR_7g076170	52.217	609	259	6	19	599	23	627	659
MS.gene50985.t1	MTR_0019s0120	55.596	554	233	4	62	603	83	635	652
MS.gene50985.t1	MTR_1g101370	52.033	615	266	8	10	598	7	618	649
MS.gene50985.t1	MTR_8g432680	51.148	610	265	8	20	599	26	632	637
MS.gene50985.t1	MTR_7g006060	51.378	508	234	3	78	572	36	543	550

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene50985.t1	AT1G26850	69.805	616	173	5	1	604	1	615	916
MS.gene50985.t1	AT1G26850	69.805	616	173	5	1	604	1	615	916
MS.gene50985.t1	AT4G18030	64.157	611	207	5	1	602	1	608	836
MS.gene50985.t1	AT1G26850	68.452	504	146	5	1	492	1	503	733
MS.gene50985.t1	AT4G10440	53.048	607	249	6	19	599	22	618	674
MS.gene50985.t1	AT1G33170	55.717	551	229	3	61	599	89	636	662
MS.gene50985.t1	AT2G45750	51.495	602	266	7	19	598	19	616	637
MS.gene50985.t1	AT4G00750	50.820	610	275	5	19	606	25	631	636
MS.gene50985.t1	AT2G43200	50.888	507	239	4	85	582	91	596	531
MS.gene50985.t1	AT2G43200	50.888	507	239	4	85	582	91	596	531

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Find 166 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTGGATCATGAGGA+TGG	0.632536	3.2:+28863712	MS.gene50985:CDS
AAACACCATTTGCATGGATA+AGG	0.463004	3.2:-28863215	None:intergenic
AACAGATCCACTGGTGATTC+TGG	0.320240	3.2:-28861216	None:intergenic
AACATGTGAATGCTTACAAG+CGG	0.626082	3.2:+28861288	MS.gene50985:CDS
AACCACCAGGTCTAAGAACT+CGG	0.593120	3.2:-28860204	None:intergenic
AACGGCGTAGAATATCCTTT+AGG	0.497535	3.2:-28858919	None:intergenic
AACTTACGCATTCTTGTACA+AGG	0.541342	3.2:-28863241	None:intergenic
AAGCAATTACCAGACATCAT+CGG	0.621464	3.2:-28860455	None:intergenic
AAGCCTTCTCCACATATCCG+AGG	0.678585	3.2:+28863184	MS.gene50985:CDS
AATAACTGTGTGGATACATG+AGG	0.659395	3.2:-28861239	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACATCAAACCTAAATG+CGG	+	chr3.2:28862494-28862513	MS.gene50985:intron	30.0%
AATGAGATGGAATACCAAAA+TGG	+	chr3.2:28863696-28863715	MS.gene50985:CDS	30.0%
ACTACAATGAAAATTGACAC+TGG	-	chr3.2:28858571-28858590	None:intergenic	30.0%
AGAATTGGATACAGTATGAA+GGG	+	chr3.2:28859019-28859038	MS.gene50985:CDS	30.0%
ATCTTAGACTAATTCAGAAG+AGG	-	chr3.2:28862082-28862101	None:intergenic	30.0%
ATTAGAACTGCATTAGATAC+TGG	+	chr3.2:28859141-28859160	MS.gene50985:CDS	30.0%
CAAGTGAAAAGAATTGCAAA+AGG	+	chr3.2:28863673-28863692	MS.gene50985:CDS	30.0%
CCGTGATACATTATTTAGTA+AGG	-	chr3.2:28859265-28859284	None:intergenic	30.0%
CGTTTAATGCAAACTACTTT+AGG	+	chr3.2:28863528-28863547	MS.gene50985:intron	30.0%
CTATAATTCATATTCTCTCG+CGG	-	chr3.2:28858847-28858866	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	28858523	28863810	28858523	ID=MS.gene50985
chr3.2	mRNA	28858523	28863810	28858523	ID=MS.gene50985.t1;Parent=MS.gene50985
chr3.2	exon	28858523	28859170	28858523	ID=MS.gene50985.t1.exon1;Parent=MS.gene50985.t1
chr3.2	CDS	28858523	28859170	28858523	ID=cds.MS.gene50985.t1;Parent=MS.gene50985.t1
chr3.2	exon	28859753	28859963	28859753	ID=MS.gene50985.t1.exon2;Parent=MS.gene50985.t1
chr3.2	CDS	28859753	28859963	28859753	ID=cds.MS.gene50985.t1;Parent=MS.gene50985.t1
chr3.2	exon	28860179	28860467	28860179	ID=MS.gene50985.t1.exon3;Parent=MS.gene50985.t1
chr3.2	CDS	28860179	28860467	28860179	ID=cds.MS.gene50985.t1;Parent=MS.gene50985.t1
chr3.2	exon	28861130	28861495	28861130	ID=MS.gene50985.t1.exon4;Parent=MS.gene50985.t1
chr3.2	CDS	28861130	28861495	28861130	ID=cds.MS.gene50985.t1;Parent=MS.gene50985.t1
chr3.2	exon	28863179	28863256	28863179	ID=MS.gene50985.t1.exon5;Parent=MS.gene50985.t1
chr3.2	CDS	28863179	28863256	28863179	ID=cds.MS.gene50985.t1;Parent=MS.gene50985.t1
chr3.2	exon	28863582	28863810	28863582	ID=MS.gene50985.t1.exon6;Parent=MS.gene50985.t1
chr3.2	CDS	28863582	28863810	28863582	ID=cds.MS.gene50985.t1;Parent=MS.gene50985.t1

Gene Sequence

>MS.gene50985

ATGGCGACGAAAGGGAACCCTGGAGATAATAGAAACAATAAAGGTCCAGTGTCAATTTTCATTGTAGTTGCTTTGTGTGGTTTCTTCTACATATTAGGTTTGTGGCAAAGGAGTGGTTTTGGAAAAGGAGATAGCATTGCTGTTGAGATTACTAAACACACAGATTGTAGTGTTCTCTCTGATCTAAATTACGAAACTCACCATGATAATGACGCTGGAACGCCTGATGATGTGGATGATCAAGTCAAGGAATTCAAGCCTTGTGACGATAGCTACATCGATTACACACCCTGCCATGATCAAGCGAGAGCAATGACGTTTCCGCGAGAGAATATGAATTATAGAGAAAGGCATTGTCCTCCTGAAGAAGAGAAATTGCATTGTCTCATAGCCGCACCTAAAGGATATTCTACGCCGTTTCCTTGGCCTAAGAGTCGTGATTATGTGCCGTTTGCAAATGCGCCTTACAAGAGTCTGACGGTTGAGAAGGCTGTGCAGAATTGGATACAGTATGAAGGGAATGTTTTTAGGTTCCCTGGTGGTGGAACTCAGTTTCCTCAGGGTGCTGATGCTTACATTAATCAACTTGCAAGTGTTATTCCATTGGATAATGGGATGATTAGAACTGCATTAGATACTGGTTGTGGGGTAAGTCAAATCCTACTAACCTAACATCCTTGTTTATATATAAATAAACTATTTAGTTGGCAGCGTTGTCAATTATGGATTGTTCAAATTCCCTTACTAAATAATGTATCACGGAAGAAGAAAACTTTGTTCAAATTCCACTACGCTTATAGCTGCTATTTAACGACATTGTTTGTTGGTCCTCTATGCATAATGGTTGCATGAAAAATAAAATTGCTCATCTTGAGCAGCCCTGGCTAATACTTATAAGCTCTGTCGTAGCAGCACTTAAGATTGAAGGCATGTCCGGTGTCTGACACCAAAAACACACCGATATGCGTTGTTACATTCAATTAATTGATTTTCTCAAATCATTATCTGTGTTGGAATGTCAGTGCCGTGCCCCTGTCTGATGTCAAGGCTTCTTAGCTTATAAGCTTTTCTAGTAGAAGCTTACGCTTCTGAATGCTTAAACCATGCAAAATTTTCTCTTTTACAATTGTTTCTTTCCCATTTTCCACTTTTAACCCTGCGTGTGTGTGCATGTAGCTTCTACTTGTGTATTCATGCTCTATCTCATTTTCCTGTCATTGATAATGCCAGGTTGCTAGTTGGGGAGCATATTTGTTCAAGAAAAATGTTATTGCAATGTCAATTGCACCAAGGGACTCTCATGAAGCACAAGTTCAATTTGCTTTGGAAAGAGGTGTTCCTGCAATCATTGGTGTTCTTGGAACAATTATGCTGCCTTTTCCTTCTGGAGCTTTTGACATGGCACATTGTTCTCGCTGCTTGATTCCATGGGGTGCAAACGGTGAGAATACTTATGAGTTTTTTTGGCCAATGTTGATTGAAATATAATCTATTGGATCCGACTAATTAATTCCTCGGCCTCGTTATAAAACGATTCCATAAGCTTTAGACCACTACCCGTATTTGTTTGGACCGTCTCTAGACACCTAAGAATTGGATTCATATACTAAATCTATATTGATTATTAAACCATAATAATTGGAACTTTTTTCTCAGGTGGATTGTACATGAAGGAAGTTGACCGAGTTCTTAGACCTGGTGGTTACTGGATACTTTCTGGTCCTCCAATCAACTGGAAGAACAACTACCGAGCGTGGCAACGTCCTGAAGATGAGCTTGAGGAGGAGCAAAGGCAAATTGAGAACACTGCTAAACTTCTTTGCTGGGAAAAGAAACACGAGAAAGGTGAAATTGCGATCTGGAGAAAAGCATTAAACATTGATGAATGCGGTGAGCAAGATACTCAACCTACAATATGTGAATCAGCAAATTCCGATGATGTCTGGTAATTGCTTCTCTTCTCTCTCCCCCCTTTTCTTTTTTTCTTTTGCTTCACTGGTTAGTTCAGAAATTATGTTCAGATAGTCAGATACCTATTATTCTTAAACCAGATTCTGTGTCAACATGGACGGACAACACTAATTATTCTTCTTCACAATTTACACGTAATTAATATTTAATTGTATACCCTGTTTTTGAAAAGAAAAACAGATGGCATGTTTCTACCGTAAGTGGTTAGTCCCAACCTATTTCGCAAGTTCGGTTATTGGAAGGATTTAACAGAAACTCCGATTTTTATTCTATATGCATTATGCAATAATTACTTATTTGCTTGTAAAATGGTGTCTTTCATGATATTGAGTGCTTAAGAAACATGTTTTCTTAGGTATGAAGCACCGACACTTCATATTGAAGGTGTCTCCGGTGTATGAGCATGTCAGACACTGACACACGTGGTTACAATCAAATATTTCATTTTCTCAAATTATTGCCAGTGTAGGCGTGGCAGTGTTGTGTCTGTTGTCTGTGTCAGTGCTTCATAGTTACATAGGCATCACAGTTTTTCAGTCTTTTATGATGTGAAATTACTGTGCAGCCCCTACCCTTTGGATTATGGACCATTGGTTTTGTTTTCAATACTCATCTAAATGGTTAGACAATGTCTAGGTACAAGAAGATGGACAATTGTGTAACTCCTGCTAAACCTAGTGGTGCATGGAAGCCATTCCCGGAGAGACTCAATGTTGTTCCTACCAGAATCACCAGTGGATCTGTTCCTCATGTATCCACACAGTTATTTGAGGAGGACAACCGATTATGGAAGAAACATGTGAATGCTTACAAGCGGGTTAACAAAATTATTGACTCGGGGAGGTATCGCAATGTGATGGACATGAATGCTGGTTTTGGAAGTTTTGCTGCTGCCCTGGATTCTCCCAAATTATGGGTTATGAATGTCGTGCCTACAATTGCTGAGAAAGCTACCCTTGGCGTTATATTCGAGCGTGGATTGATTGGAATTTATCATGATTGGTAACTTCCTTAACTTGGTTTTCTCTTTCCTTTTGGCTTTTCCTCTGTGAATTTTATTAGTCATTGAGTTGGTTATCTTTTTCTATAATTTTCTCCCTGAATCTATAAAGAACCAAACTTAGATACAGTCCTTACGCCACTGTTCTTACTCTTGCTGCCACTTCAAGAAAGTTTTTTCACACATTAGTAAAACTGTGGTGACAGATATGCTATATTTTTTAGAATATAGCACTGTCCCTAATCCATTTATAAATTAGGATGTCAACATTAAGATTATACTGGCTATGACCATCTGCTGGATAAAGAGAAGTGTAAATATTATAGCATTTGGTGTATTGTTAGAATTAAAGAAAAGTAACAATGAAGTAGGAATGTTTTGGTGATTTATTCAGAATTTTGAATGGTTCGTGTGTTTTATTGAAGAATTTTTTTGTTGACGTTATATATGGATTCGGGCGGAGAGTGAACTCTGAATTATTGAGTACAACAATGATGTGTTACAAAATCGAAAACAATATGTCTTTATATAGTACTAAACTCCTAATCCCAATCAAACAAGGAAGCATATAAATAAATATGAAAACCTCTTCTGAATTAGTCTAAGATACATATCATTTGGCACTTGAAACTCAAGCATAATGAATTTGGGACTAAAGACGGGATGAACAGCATGTGACTGAAGATAAGGCCGTAATGCCTTGAGGAGAGTTACACGGCCACCGGTTGCATATTTTGATAAGCACAGGGCTCGTGTGTGAGTCATGACCGACATAAGCCACTGTTACTTTGGATTCTGTGTGAGTTGTGACCAACATAAGCCATTGCTAGTATAAGTCATCACTACTGGTAGATTCATTAGTGCAACAAGGTCATCATGACAAACACTTTCACATGTTTTTCCTCCGAGTGCTATGCAAAAGTTCATAATAAGCCGTGTAGTACCAAAACAACAACATATCAGATATATAGCCACCTCAATGAATGCAAAATAGTTGACCAAACACATCAAACCTAAATGCGGAGAGGGGTAAGAAATTAGTCAGATCTGTAACTGTTCTAAACTTTGGGGAACTTAATGATTAAAAAAGGAACAGCTCAGGACAAGACGGATGTACCACTTTAATACCTTGTTCAGATTTAAGTGATTCAAGTAGAGAAGGAAGACAAAAGAGAACAAAATATAAATTATAAAATATAATATCTTTGGTGTGTTTATCAGGGATCTGTTTGTTTGCTGCAGTACATTTTAGTAGTCAAAAGTTACAATGATATTTATTTCATTGTTTGCAATATGCATGCTATGGGCAATCAGCATTTGTTACCGGGTATAGACGGTAGATGTTTTACATATTGGACAAAGCATACAACCCCAAGGTTAAAAGAAAAACGGAGTTTAAAGAGATGAAGCATCAAAATCAATATAGTAGATGATCTGCTGAAATATGTAATAGGATCACGCTCAGAATTTCTTCTTTCAGAAACAAATCCTGCTAAATTTGCTTTCAGTGAACTTTCATATATTATAACCTGCAGAAATTTTTAATCTGAATTTAGTATGGCAATGTTAAGTAAGCAATAGATGGTCAATGTTGAGCTTACTTGTATGTCAATAATTATGTTATCATTCAATTCAAAAACCTAGCCTTGTTCTGTTTATTAATTAATTATCTATTTCCGTATCAGGTGTGAAGCCTTCTCCACATATCCGAGGACTTATGACCTTATCCATGCAAATGGTGTTTTCACCTTGTACAAGAATGCGTAAGTTTATTTCTCTTTCTTTCCTAGCTTGTACATGTCAAAATGATTTTACCAGAAACAAAAAAACAAATTGGCAATAATGTAAAATGCTTAAAATAGACACTGCAGTAGAAACCATGGTTATCAGTATCTTACAAACATGCGAGTTGTATCTCAATTCGATATTGAACCCAATTGCTAGGAATCTCTAGTGTGTATCTTTTTGGACCTCATCTTGAGTTAGGCCTCACTGTGGTAAATCTCGTCTCGTTGTGATGAAGCACTACCTAATCGTTTAATGCAAACTACTTTAGGTTTTCCCTAACTCTGGCGATGATCAATGCAGGTGTAATGCAGAAGATATTTTATTGGAGATGGACCGTATCTTACGGCCTGAAGGAGCGGTTATATTCCGAGATCAGGTTGGTGTGCTGAAGCAAGTGAAAAGAATTGCAAAAGGAATGAGATGGAATACCAAAATGGTGGATCATGAGGATGGTCCACTTATTTCAGAAAAGGTCTTGTATGCCGTCAAGCGGTACTGGGTTGCAGGTGACAACACCACAAGCTCATAG

Protein sequence

>MS.gene50985.t1

MATKGNPGDNRNNKGPVSIFIVVALCGFFYILGLWQRSGFGKGDSIAVEITKHTDCSVLSDLNYETHHDNDAGTPDDVDDQVKEFKPCDDSYIDYTPCHDQARAMTFPRENMNYRERHCPPEEEKLHCLIAAPKGYSTPFPWPKSRDYVPFANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPQGADAYINQLASVIPLDNGMIRTALDTGCGVASWGAYLFKKNVIAMSIAPRDSHEAQVQFALERGVPAIIGVLGTIMLPFPSGAFDMAHCSRCLIPWGANGGLYMKEVDRVLRPGGYWILSGPPINWKNNYRAWQRPEDELEEEQRQIENTAKLLCWEKKHEKGEIAIWRKALNIDECGEQDTQPTICESANSDDVWYKKMDNCVTPAKPSGAWKPFPERLNVVPTRITSGSVPHVSTQLFEEDNRLWKKHVNAYKRVNKIIDSGRYRNVMDMNAGFGSFAAALDSPKLWVMNVVPTIAEKATLGVIFERGLIGIYHDWCEAFSTYPRTYDLIHANGVFTLYKNACNAEDILLEMDRILRPEGAVIFRDQVGVLKQVKRIAKGMRWNTKMVDHEDGPLISEKVLYAVKRYWVAGDNTTSS