Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52940.t1 | XP_003595099.1 | 98 | 102 | 2 | 0 | 39 | 140 | 143 | 244 | 7.50E-51 | 209.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52940.t1 | P60039 | 85.3 | 102 | 15 | 0 | 39 | 140 | 141 | 242 | 1.3e-48 | 193.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52940.t1 | A0A072VPV6 | 98.0 | 102 | 2 | 0 | 39 | 140 | 174 | 275 | 5.4e-51 | 209.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene52940 | 0.814977 | 1.17E-51 | -1.69E-46 |
| MS.gene049255 | MS.gene52940 | 0.810868 | 9.31E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene52940 | 0.821586 | 3.73E-53 | -1.69E-46 |
| MS.gene049824 | MS.gene52940 | 0.828879 | 7.03E-55 | -1.69E-46 |
| MS.gene049825 | MS.gene52940 | 0.839815 | 1.26E-57 | -1.69E-46 |
| MS.gene049850 | MS.gene52940 | 0.809677 | 1.68E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene52940 | 0.86159 | 9.22E-64 | -1.69E-46 |
| MS.gene050303 | MS.gene52940 | 0.831576 | 1.54E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene52940 | 0.809936 | 1.48E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene52940 | 0.807826 | 4.18E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene52940 | 0.825493 | 4.55E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene52940 | 0.822961 | 1.79E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene52940 | 0.810129 | 1.34E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene52940 | 0.817841 | 2.67E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene52940 | 0.82379 | 1.15E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene52940 | 0.806764 | 7.02E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene52940 | 0.839204 | 1.82E-57 | -1.69E-46 |
| MS.gene052582 | MS.gene52940 | 0.813677 | 2.27E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene52940 | 0.825562 | 4.38E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene52940 | 0.837033 | 6.60E-57 | -1.69E-46 |
| MS.gene053008 | MS.gene52940 | 0.80603 | 1.00E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene52940 | 0.802498 | 5.45E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene52940 | 0.817902 | 2.59E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene52940 | 0.858921 | 5.91E-63 | -1.69E-46 |
| MS.gene05364 | MS.gene52940 | 0.801085 | 1.06E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene52940 | 0.81206 | 5.13E-51 | -1.69E-46 |
| MS.gene054775 | MS.gene52940 | 0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene05517 | MS.gene52940 | 0.80175 | 7.77E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene52940 | 0.831394 | 1.71E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene52940 | 0.810857 | 9.35E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene52940 | 0.818499 | 1.90E-52 | -1.69E-46 |
| MS.gene055580 | MS.gene52940 | -0.842925 | 1.92E-58 | -1.69E-46 |
| MS.gene055694 | MS.gene52940 | 0.801985 | 6.95E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene52940 | 0.825529 | 4.46E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene52940 | -0.833001 | 6.85E-56 | -1.69E-46 |
| MS.gene056091 | MS.gene52940 | 0.808544 | 2.94E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene52940 | 0.8064 | 8.38E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene52940 | 0.803275 | 3.77E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene52940 | 0.824057 | 9.92E-54 | -1.69E-46 |
| MS.gene056642 | MS.gene52940 | 0.802839 | 4.64E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene52940 | 0.808039 | 3.77E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene52940 | 0.8002 | 1.61E-48 | -1.69E-46 |
| MS.gene057705 | MS.gene52940 | 0.806553 | 7.78E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene52940 | 0.8087 | 2.72E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene52940 | 0.829881 | 4.02E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene52940 | 0.828476 | 8.80E-55 | -1.69E-46 |
| MS.gene05954 | MS.gene52940 | 0.851286 | 9.80E-61 | -1.69E-46 |
| MS.gene059625 | MS.gene52940 | 0.803086 | 4.12E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene52940 | 0.80624 | 9.05E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene52940 | 0.829514 | 4.93E-55 | -1.69E-46 |
| MS.gene060365 | MS.gene52940 | 0.805498 | 1.30E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene52940 | 0.861962 | 7.09E-64 | -1.69E-46 |
| MS.gene060587 | MS.gene52940 | 0.814946 | 1.19E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52940.t1 | MTR_2g038250 | 98.039 | 102 | 2 | 0 | 39 | 140 | 143 | 244 | 6.53e-71 | 213 |
| MS.gene52940.t1 | MTR_1g022385 | 98.039 | 102 | 2 | 0 | 39 | 140 | 174 | 275 | 1.90e-70 | 213 |
| MS.gene52940.t1 | MTR_4g008160 | 89.216 | 102 | 11 | 0 | 39 | 140 | 142 | 243 | 2.90e-65 | 199 |
| MS.gene52940.t1 | MTR_1g022375 | 76.829 | 82 | 19 | 0 | 49 | 130 | 75 | 156 | 2.96e-42 | 137 |
| MS.gene52940.t1 | MTR_7g059170 | 54.902 | 102 | 46 | 0 | 39 | 140 | 145 | 246 | 1.12e-40 | 136 |
| MS.gene52940.t1 | MTR_1g108785 | 75.676 | 37 | 8 | 1 | 97 | 132 | 23 | 59 | 1.58e-12 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52940.t1 | AT2G44120 | 85.294 | 102 | 15 | 0 | 39 | 140 | 141 | 242 | 2.91e-64 | 196 |
| MS.gene52940.t1 | AT2G44120 | 85.294 | 102 | 15 | 0 | 39 | 140 | 146 | 247 | 3.63e-64 | 196 |
| MS.gene52940.t1 | AT2G01250 | 86.275 | 102 | 14 | 0 | 39 | 140 | 141 | 242 | 5.43e-64 | 195 |
| MS.gene52940.t1 | AT3G13580 | 84.314 | 102 | 16 | 0 | 39 | 140 | 143 | 244 | 5.23e-63 | 193 |
| MS.gene52940.t1 | AT3G13580 | 84.314 | 102 | 16 | 0 | 39 | 140 | 143 | 244 | 5.23e-63 | 193 |
| MS.gene52940.t1 | AT3G13580 | 84.314 | 102 | 16 | 0 | 39 | 140 | 143 | 244 | 5.23e-63 | 193 |
| MS.gene52940.t1 | AT3G13580 | 84.314 | 102 | 16 | 0 | 39 | 140 | 143 | 244 | 5.23e-63 | 193 |
| MS.gene52940.t1 | AT3G13580 | 84.314 | 102 | 16 | 0 | 39 | 140 | 143 | 244 | 5.23e-63 | 193 |
| MS.gene52940.t1 | AT3G13580 | 84.314 | 102 | 16 | 0 | 39 | 140 | 143 | 244 | 5.23e-63 | 193 |
| MS.gene52940.t1 | AT3G13580 | 84.314 | 102 | 16 | 0 | 39 | 140 | 143 | 244 | 5.23e-63 | 193 |
| MS.gene52940.t1 | AT3G13580 | 84.314 | 102 | 16 | 0 | 39 | 140 | 143 | 244 | 5.23e-63 | 193 |
| MS.gene52940.t1 | AT3G13580 | 84.314 | 102 | 16 | 0 | 39 | 140 | 143 | 244 | 5.23e-63 | 193 |
| MS.gene52940.t1 | AT1G80750 | 52.941 | 102 | 47 | 1 | 40 | 140 | 146 | 247 | 1.05e-30 | 110 |
| MS.gene52940.t1 | AT2G01250 | 72.973 | 37 | 10 | 0 | 39 | 75 | 141 | 177 | 5.02e-11 | 58.2 |
Find 37 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCATTAGAAGGATGAATT+AGG | 0.270598 | 1.1:-57004894 | None:intergenic |
| TTTCAAGCTCAAAGCTCCTT+TGG | 0.284641 | 1.1:-57004990 | MS.gene52940:CDS |
| AGTGTTCAATTGCAGGTTCT+TGG | 0.317764 | 1.1:-57005103 | MS.gene52940:intron |
| TTCAAGCTCAAAGCTCCTTT+GGG | 0.329811 | 1.1:-57004989 | MS.gene52940:CDS |
| TTGATCTACAAGCGCGGTTA+TGG | 0.337108 | 1.1:-57005452 | MS.gene52940:CDS |
| TCAATTCTCTAACACTCTTC+AGG | 0.373375 | 1.1:+57005471 | None:intergenic |
| AAGGTGGTGATGCTGGTAAC+AGG | 0.401808 | 1.1:-57004934 | MS.gene52940:CDS |
| GTGTTCAATTGCAGGTTCTT+GGG | 0.403327 | 1.1:-57005102 | MS.gene52940:intron |
| ACATCAATGAACTCATTAGA+AGG | 0.462677 | 1.1:-57004904 | MS.gene52940:CDS |
| GAAGCGTGAAGCTAAGCTTA+AGG | 0.464202 | 1.1:-57005511 | MS.gene52940:intron |
| AAGCGTGAAGCTAAGCTTAA+GGG | 0.467088 | 1.1:-57005510 | MS.gene52940:CDS |
| AGATAACTCTATCATTGAAC+AGG | 0.482014 | 1.1:-57005399 | MS.gene52940:intron |
| TTTATGCATCTACGGAGGTC+AGG | 0.484893 | 1.1:-57005892 | MS.gene52940:CDS |
| AAGAGAAATCACTATGTTGA+AGG | 0.489111 | 1.1:-57004953 | MS.gene52940:CDS |
| AAAGGAGCTTTGAGCTTGAA+AGG | 0.504831 | 1.1:+57004992 | None:intergenic |
| GAGAGGCAAACAACTTCCTA+TGG | 0.504947 | 1.1:-57005015 | MS.gene52940:CDS |
| TATGTTGAAGGTGGTGATGC+TGG | 0.533299 | 1.1:-57004941 | MS.gene52940:CDS |
| AAGCTGAGAAAGAACATGGT+TGG | 0.534698 | 1.1:-57005837 | MS.gene52940:CDS |
| TTGCAGGTTCTTGGGAAACA+TGG | 0.547799 | 1.1:-57005094 | MS.gene52940:intron |
| ATCCACGAGATCATGACTGT+TGG | 0.549865 | 1.1:-57005049 | MS.gene52940:CDS |
| GCGGTTATGGAAAGGTTGAT+AGG | 0.549876 | 1.1:-57005439 | MS.gene52940:CDS |
| TTCTTCTTCATGCCACCCAA+AGG | 0.554983 | 1.1:+57004974 | None:intergenic |
| TGACAGGGTTTATGCATCTA+CGG | 0.562090 | 1.1:-57005900 | None:intergenic |
| CTTTGAGCTTGAAAGGCCAT+AGG | 0.568033 | 1.1:+57004999 | None:intergenic |
| AAGCTCAAAGCTCCTTTGGG+TGG | 0.570830 | 1.1:-57004986 | MS.gene52940:CDS |
| ATCCAACAGTCATGATCTCG+TGG | 0.585385 | 1.1:+57005047 | None:intergenic |
| CTACAAGCGCGGTTATGGAA+AGG | 0.599869 | 1.1:-57005447 | MS.gene52940:CDS |
| CGTGAAGCTAAGCTTAAGGG+TGG | 0.634387 | 1.1:-57005507 | MS.gene52940:CDS |
| GAGAAAGCTGAGAAAGAACA+TGG | 0.636998 | 1.1:-57005841 | MS.gene52940:CDS |
| AGAAATCACTATGTTGAAGG+TGG | 0.637998 | 1.1:-57004950 | MS.gene52940:CDS |
| GAGGTCAGGAGAGGCTACAG+AGG | 0.640976 | 1.1:-57005878 | MS.gene52940:CDS |
| AGGTGGTGATGCTGGTAACA+GGG | 0.651466 | 1.1:-57004933 | MS.gene52940:CDS |
| GCATCTACGGAGGTCAGGAG+AGG | 0.664972 | 1.1:-57005887 | MS.gene52940:CDS |
| AGAGAATTGATCTACAAGCG+CGG | 0.721136 | 1.1:-57005458 | MS.gene52940:CDS |
| TGTTGGATCTCACTTCAGAG+AGG | 0.724978 | 1.1:-57005032 | MS.gene52940:CDS |
| TGGTGATGCTGGTAACAGGG+AGG | 0.745630 | 1.1:-57004930 | MS.gene52940:CDS |
| CAGGGTTTATGCATCTACGG+AGG | 0.767701 | 1.1:-57005897 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATAGAAAAATTTAAC+CGG | + | chr1.1:57005652-57005671 | None:intergenic | 15.0% |
| !!! | AATGTTTTAGAATTTTAGAA+TGG | - | chr1.1:57005211-57005230 | MS.gene52940:intron | 15.0% |
| !!! | AATTTAAAGTACGTATTTGT+GGG | - | chr1.1:57005128-57005147 | MS.gene52940:intron | 20.0% |
| !!! | TAATTTAAAGTACGTATTTG+TGG | - | chr1.1:57005127-57005146 | MS.gene52940:intron | 20.0% |
| !!! | TTCTTTCTTTGACTTATATA+TGG | - | chr1.1:57005061-57005080 | MS.gene52940:CDS | 20.0% |
| !!! | TTTAGAATTTTAGAATGGTA+AGG | - | chr1.1:57005216-57005235 | MS.gene52940:intron | 20.0% |
| ! | CTTTCATATTTGTTCTTGTA+GGG | - | chr1.1:57005096-57005115 | MS.gene52940:intron | 25.0% |
| ! | GTTTATCCAATTAATAGTGA+GGG | - | chr1.1:57005168-57005187 | MS.gene52940:intron | 25.0% |
| ! | TGTTTATCCAATTAATAGTG+AGG | - | chr1.1:57005167-57005186 | MS.gene52940:intron | 25.0% |
| AAGAGAAATCACTATGTTGA+AGG | - | chr1.1:57005831-57005850 | MS.gene52940:intron | 30.0% | |
| ACATCAATGAACTCATTAGA+AGG | - | chr1.1:57005880-57005899 | MS.gene52940:CDS | 30.0% | |
| AGATAACTCTATCATTGAAC+AGG | - | chr1.1:57005385-57005404 | MS.gene52940:intron | 30.0% | |
| AGTCAAAGAAAGAATCTCAT+TGG | + | chr1.1:57005055-57005074 | None:intergenic | 30.0% | |
| GCTTTCATATTTGTTCTTGT+AGG | - | chr1.1:57005095-57005114 | MS.gene52940:intron | 30.0% | |
| !! | GGTGCTATTATTATTGTTGA+AGG | - | chr1.1:57005618-57005637 | MS.gene52940:intron | 30.0% |
| !!! | CTTTGAAACATCCTTTTCTA+GGG | - | chr1.1:57004999-57005018 | MS.gene52940:CDS | 30.0% |
| !!! | TCTTTGAAACATCCTTTTCT+AGG | - | chr1.1:57004998-57005017 | MS.gene52940:CDS | 30.0% |
| AACAACTCACATTCTGACTT+TGG | + | chr1.1:57005523-57005542 | None:intergenic | 35.0% | |
| AATAATAGCACCACCATACA+GGG | + | chr1.1:57005610-57005629 | None:intergenic | 35.0% | |
| ACATTCTGACTTTGGCAAAT+TGG | + | chr1.1:57005515-57005534 | None:intergenic | 35.0% | |
| AGAAATCACTATGTTGAAGG+TGG | - | chr1.1:57005834-57005853 | MS.gene52940:intron | 35.0% | |
| ATCCAATTAATAGTGAGGGA+TGG | - | chr1.1:57005172-57005191 | MS.gene52940:intron | 35.0% | |
| ATTGTTGAAGGTTATGTTGC+CGG | - | chr1.1:57005630-57005649 | MS.gene52940:intron | 35.0% | |
| CATTCTGACTTTGGCAAATT+GGG | + | chr1.1:57005514-57005533 | None:intergenic | 35.0% | |
| CTGAACTGTATGACATAGAT+GGG | - | chr1.1:57005459-57005478 | MS.gene52940:CDS | 35.0% | |
| GTGATAACTACATCCAATGA+GGG | + | chr1.1:57005028-57005047 | None:intergenic | 35.0% | |
| TAATAATAGCACCACCATAC+AGG | + | chr1.1:57005611-57005630 | None:intergenic | 35.0% | |
| TACCATCCCTCACTATTAAT+TGG | + | chr1.1:57005177-57005196 | None:intergenic | 35.0% | |
| TCAATTCTCTAACACTCTTC+AGG | + | chr1.1:57005316-57005335 | None:intergenic | 35.0% | |
| TCTGAACTGTATGACATAGA+TGG | - | chr1.1:57005458-57005477 | MS.gene52940:CDS | 35.0% | |
| TGTGATAACTACATCCAATG+AGG | + | chr1.1:57005029-57005048 | None:intergenic | 35.0% | |
| AAGCGTGAAGCTAAGCTTAA+GGG | - | chr1.1:57005274-57005293 | MS.gene52940:intron | 40.0% | |
| AAGCTGAGAAAGAACATGGT+TGG | - | chr1.1:57004947-57004966 | MS.gene52940:CDS | 40.0% | |
| AATGAGGGATTCCCTAGAAA+AGG | + | chr1.1:57005013-57005032 | None:intergenic | 40.0% | |
| AGAGAATTGATCTACAAGCG+CGG | - | chr1.1:57005326-57005345 | MS.gene52940:intron | 40.0% | |
| AGTGTTCAATTGCAGGTTCT+TGG | - | chr1.1:57005681-57005700 | MS.gene52940:intron | 40.0% | |
| ATAATAGCACCACCATACAG+GGG | + | chr1.1:57005609-57005628 | None:intergenic | 40.0% | |
| CTGACATAGTGTTCAATTGC+AGG | - | chr1.1:57005674-57005693 | MS.gene52940:intron | 40.0% | |
| GAGAAAGCTGAGAAAGAACA+TGG | - | chr1.1:57004943-57004962 | MS.gene52940:CDS | 40.0% | |
| GGAATACGATGATTCGCAAA+AGG | - | chr1.1:57005237-57005256 | MS.gene52940:intron | 40.0% | |
| GTGTTCAATTGCAGGTTCTT+GGG | - | chr1.1:57005682-57005701 | MS.gene52940:intron | 40.0% | |
| TGTGTGATCGAATGAAAGCA+GGG | + | chr1.1:57005430-57005449 | None:intergenic | 40.0% | |
| TTCAAGCTCAAAGCTCCTTT+GGG | - | chr1.1:57005795-57005814 | MS.gene52940:intron | 40.0% | |
| TTTCAAGCTCAAAGCTCCTT+TGG | - | chr1.1:57005794-57005813 | MS.gene52940:intron | 40.0% | |
| !! | AAAGGAGCTTTGAGCTTGAA+AGG | + | chr1.1:57005795-57005814 | None:intergenic | 40.0% |
| !! | TTTTCTAGGGAATCCCTCAT+TGG | - | chr1.1:57005012-57005031 | MS.gene52940:CDS | 40.0% |
| ATCCAACAGTCATGATCTCG+TGG | + | chr1.1:57005740-57005759 | None:intergenic | 45.0% | |
| ATCCACGAGATCATGACTGT+TGG | - | chr1.1:57005735-57005754 | MS.gene52940:intron | 45.0% | |
| CTGTGTGATCGAATGAAAGC+AGG | + | chr1.1:57005431-57005450 | None:intergenic | 45.0% | |
| CTTTGAGCTTGAAAGGCCAT+AGG | + | chr1.1:57005788-57005807 | None:intergenic | 45.0% | |
| GAAGCGTGAAGCTAAGCTTA+AGG | - | chr1.1:57005273-57005292 | MS.gene52940:intron | 45.0% | |
| GAGAGGCAAACAACTTCCTA+TGG | - | chr1.1:57005769-57005788 | MS.gene52940:intron | 45.0% | |
| TGTTGGATCTCACTTCAGAG+AGG | - | chr1.1:57005752-57005771 | MS.gene52940:intron | 45.0% | |
| TTCTTCTTCATGCCACCCAA+AGG | + | chr1.1:57005813-57005832 | None:intergenic | 45.0% | |
| TTGATCTACAAGCGCGGTTA+TGG | - | chr1.1:57005332-57005351 | MS.gene52940:intron | 45.0% | |
| TTGCAGGTTCTTGGGAAACA+TGG | - | chr1.1:57005690-57005709 | MS.gene52940:intron | 45.0% | |
| ! | GCGGTTATGGAAAGGTTGAT+AGG | - | chr1.1:57005345-57005364 | MS.gene52940:intron | 45.0% |
| ! | TATGTTGAAGGTGGTGATGC+TGG | - | chr1.1:57005843-57005862 | MS.gene52940:CDS | 45.0% |
| AAGCTCAAAGCTCCTTTGGG+TGG | - | chr1.1:57005798-57005817 | MS.gene52940:intron | 50.0% | |
| CGTGAAGCTAAGCTTAAGGG+TGG | - | chr1.1:57005277-57005296 | MS.gene52940:intron | 50.0% | |
| CTACAAGCGCGGTTATGGAA+AGG | - | chr1.1:57005337-57005356 | MS.gene52940:intron | 50.0% | |
| CTTGACCAATGTCCCCTGTA+TGG | - | chr1.1:57005594-57005613 | MS.gene52940:intron | 50.0% | |
| ! | AAGGTGGTGATGCTGGTAAC+AGG | - | chr1.1:57005850-57005869 | MS.gene52940:CDS | 50.0% |
| ! | AGGTGGTGATGCTGGTAACA+GGG | - | chr1.1:57005851-57005870 | MS.gene52940:CDS | 50.0% |
| CACCACCATACAGGGGACAT+TGG | + | chr1.1:57005602-57005621 | None:intergenic | 55.0% | |
| GACCAATGTCCCCTGTATGG+TGG | - | chr1.1:57005597-57005616 | MS.gene52940:intron | 55.0% | |
| ! | TGGTGATGCTGGTAACAGGG+AGG | - | chr1.1:57005854-57005873 | MS.gene52940:CDS | 55.0% |
| GAGGTCAGGAGAGGCTACAG+AGG | - | chr1.1:57004906-57004925 | MS.gene52940:CDS | 60.0% | |
| GCATCTACGGAGGTCAGGAG+AGG | - | chr1.1:57004897-57004916 | MS.gene52940:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 57004895 | 57005911 | 57004895 | ID=MS.gene52940 |
| chr1.1 | mRNA | 57004895 | 57005911 | 57004895 | ID=MS.gene52940.t1;Parent=MS.gene52940 |
| chr1.1 | exon | 57005835 | 57005911 | 57005835 | ID=MS.gene52940.t1.exon1;Parent=MS.gene52940.t1 |
| chr1.1 | CDS | 57005835 | 57005911 | 57005835 | ID=cds.MS.gene52940.t1;Parent=MS.gene52940.t1 |
| chr1.1 | exon | 57005400 | 57005529 | 57005400 | ID=MS.gene52940.t1.exon2;Parent=MS.gene52940.t1 |
| chr1.1 | CDS | 57005400 | 57005529 | 57005400 | ID=cds.MS.gene52940.t1;Parent=MS.gene52940.t1 |
| chr1.1 | exon | 57004895 | 57005110 | 57004895 | ID=MS.gene52940.t1.exon3;Parent=MS.gene52940.t1 |
| chr1.1 | CDS | 57004895 | 57005110 | 57004895 | ID=cds.MS.gene52940.t1;Parent=MS.gene52940.t1 |
| Gene Sequence |
| Protein sequence |
