Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53494.t1 | RHN42810.1 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 2.20E-93 | 351.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53494.t1 | C6TG62 | 68.4 | 193 | 61 | 0 | 1 | 193 | 1 | 193 | 5.9e-71 | 268.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53494.t1 | A0A396GP31 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 1.6e-93 | 351.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene53494 | 0.887395 | 1.48E-72 | -1.69E-46 |
| MS.gene050338 | MS.gene53494 | 0.811765 | 5.94E-51 | -1.69E-46 |
| MS.gene05104 | MS.gene53494 | 0.803732 | 3.03E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene53494 | 0.838904 | 2.18E-57 | -1.69E-46 |
| MS.gene051364 | MS.gene53494 | 0.817321 | 3.50E-52 | -1.69E-46 |
| MS.gene051366 | MS.gene53494 | 0.811983 | 5.33E-51 | -1.69E-46 |
| MS.gene051367 | MS.gene53494 | 0.803973 | 2.70E-49 | -1.69E-46 |
| MS.gene051422 | MS.gene53494 | 0.835842 | 1.33E-56 | -1.69E-46 |
| MS.gene051651 | MS.gene53494 | 0.813089 | 3.05E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene53494 | 0.803113 | 4.07E-49 | -1.69E-46 |
| MS.gene052606 | MS.gene53494 | 0.825578 | 4.34E-54 | -1.69E-46 |
| MS.gene053420 | MS.gene53494 | 0.825466 | 4.62E-54 | -1.69E-46 |
| MS.gene053568 | MS.gene53494 | 0.802327 | 5.91E-49 | -1.69E-46 |
| MS.gene053920 | MS.gene53494 | 0.82656 | 2.54E-54 | -1.69E-46 |
| MS.gene054181 | MS.gene53494 | 0.802516 | 5.40E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene53494 | 0.808619 | 2.83E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene53494 | 0.80308 | 4.13E-49 | -1.69E-46 |
| MS.gene055158 | MS.gene53494 | 0.807526 | 4.84E-50 | -1.69E-46 |
| MS.gene056590 | MS.gene53494 | 0.830345 | 3.09E-55 | -1.69E-46 |
| MS.gene056591 | MS.gene53494 | 0.828503 | 8.67E-55 | -1.69E-46 |
| MS.gene056694 | MS.gene53494 | 0.80964 | 1.71E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene53494 | 0.814186 | 1.75E-51 | -1.69E-46 |
| MS.gene056748 | MS.gene53494 | 0.812136 | 4.93E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene53494 | 0.85109 | 1.11E-60 | -1.69E-46 |
| MS.gene057261 | MS.gene53494 | 0.801987 | 6.95E-49 | -1.69E-46 |
| MS.gene057549 | MS.gene53494 | 0.83313 | 6.36E-56 | -1.69E-46 |
| MS.gene057717 | MS.gene53494 | 0.832299 | 1.02E-55 | -1.69E-46 |
| MS.gene057768 | MS.gene53494 | 0.80983 | 1.56E-50 | -1.69E-46 |
| MS.gene058067 | MS.gene53494 | 0.840785 | 7.05E-58 | -1.69E-46 |
| MS.gene058068 | MS.gene53494 | 0.866229 | 3.32E-65 | -1.69E-46 |
| MS.gene058099 | MS.gene53494 | 0.833958 | 3.95E-56 | -1.69E-46 |
| MS.gene058111 | MS.gene53494 | 0.802748 | 4.84E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene53494 | 0.806938 | 6.45E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene53494 | 0.809427 | 1.90E-50 | -1.69E-46 |
| MS.gene058268 | MS.gene53494 | 0.81884 | 1.59E-52 | -1.69E-46 |
| MS.gene058269 | MS.gene53494 | 0.814147 | 1.79E-51 | -1.69E-46 |
| MS.gene058334 | MS.gene53494 | 0.809772 | 1.60E-50 | -1.69E-46 |
| MS.gene058382 | MS.gene53494 | 0.805624 | 1.22E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene53494 | 0.806937 | 6.45E-50 | -1.69E-46 |
| MS.gene059685 | MS.gene53494 | 0.832337 | 1.00E-55 | -1.69E-46 |
| MS.gene059953 | MS.gene53494 | 0.802811 | 4.70E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene53494 | 0.814356 | 1.61E-51 | -1.69E-46 |
| MS.gene060405 | MS.gene53494 | 0.803652 | 3.15E-49 | -1.69E-46 |
| MS.gene060823 | MS.gene53494 | 0.805622 | 1.22E-49 | -1.69E-46 |
| MS.gene061044 | MS.gene53494 | 0.804222 | 2.40E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53494.t1 | MTR_8g089300 | 95.876 | 194 | 8 | 0 | 1 | 194 | 1 | 194 | 5.61e-127 | 355 |
| MS.gene53494.t1 | MTR_0097s0070 | 75.773 | 194 | 46 | 1 | 1 | 193 | 1 | 194 | 1.98e-97 | 281 |
| MS.gene53494.t1 | MTR_4g118810 | 36.111 | 144 | 90 | 2 | 28 | 170 | 35 | 177 | 3.66e-25 | 97.1 |
| MS.gene53494.t1 | MTR_0004s0210 | 35.185 | 162 | 89 | 2 | 28 | 189 | 10 | 155 | 1.11e-23 | 92.4 |
| MS.gene53494.t1 | MTR_2g020060 | 35.260 | 173 | 92 | 4 | 30 | 194 | 27 | 187 | 2.13e-23 | 92.4 |
| MS.gene53494.t1 | MTR_7g108130 | 32.778 | 180 | 114 | 3 | 16 | 194 | 18 | 191 | 2.24e-23 | 92.4 |
| MS.gene53494.t1 | MTR_4g081880 | 29.630 | 189 | 106 | 6 | 9 | 184 | 6 | 180 | 2.72e-16 | 73.6 |
| MS.gene53494.t1 | MTR_4g118800 | 30.159 | 126 | 87 | 1 | 64 | 188 | 56 | 181 | 2.81e-16 | 73.6 |
| MS.gene53494.t1 | MTR_7g011090 | 28.387 | 155 | 104 | 1 | 30 | 184 | 32 | 179 | 8.16e-16 | 72.4 |
| MS.gene53494.t1 | MTR_5g041900 | 28.387 | 155 | 104 | 1 | 30 | 184 | 32 | 179 | 5.18e-13 | 64.7 |
| MS.gene53494.t1 | MTR_1g058540 | 29.861 | 144 | 92 | 3 | 30 | 172 | 42 | 177 | 5.30e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53494.t1 | AT5G44550 | 53.714 | 175 | 81 | 0 | 19 | 193 | 11 | 185 | 5.24e-61 | 189 |
| MS.gene53494.t1 | AT4G20390 | 55.491 | 173 | 76 | 1 | 23 | 194 | 14 | 186 | 2.38e-55 | 174 |
| MS.gene53494.t1 | AT4G15610 | 33.803 | 142 | 89 | 3 | 30 | 170 | 33 | 170 | 1.48e-20 | 85.1 |
| MS.gene53494.t1 | AT1G03700 | 30.189 | 159 | 95 | 2 | 28 | 186 | 11 | 153 | 1.09e-19 | 82.0 |
| MS.gene53494.t1 | AT4G15630 | 31.481 | 162 | 109 | 2 | 28 | 188 | 29 | 189 | 1.23e-19 | 82.4 |
| MS.gene53494.t1 | AT1G14160 | 32.121 | 165 | 102 | 2 | 30 | 194 | 55 | 209 | 3.87e-19 | 81.6 |
| MS.gene53494.t1 | AT4G15620 | 29.341 | 167 | 116 | 2 | 23 | 188 | 24 | 189 | 1.12e-18 | 80.1 |
| MS.gene53494.t1 | AT5G15290 | 30.114 | 176 | 108 | 4 | 1 | 171 | 1 | 166 | 1.86e-17 | 76.6 |
| MS.gene53494.t1 | AT3G06390 | 31.061 | 132 | 87 | 2 | 31 | 161 | 42 | 170 | 3.20e-14 | 68.6 |
| MS.gene53494.t1 | AT4G03540 | 28.244 | 131 | 78 | 2 | 43 | 173 | 26 | 140 | 1.53e-13 | 65.9 |
Find 45 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGTCAGTCTTCATAATT+TGG | 0.186212 | 4.2:+12263046 | MS.gene53494:CDS |
| GCCTTAATAGCTTCTTTCAT+TGG | 0.241559 | 4.2:+12263383 | MS.gene53494:CDS |
| GCAGTAAGAGGAACTGTAAT+TGG | 0.269342 | 4.2:-12262830 | None:intergenic |
| AAAAGGATCCAATCCTTCTT+TGG | 0.280238 | 4.2:-12262704 | None:intergenic |
| CCCAATGAAAGAAGCTATTA+AGG | 0.288413 | 4.2:-12263384 | None:intergenic |
| TCCTTCTTTGGTTTGGTCTC+AGG | 0.290070 | 4.2:-12262692 | None:intergenic |
| AGCAACATTTATGTCAGAAT+TGG | 0.314088 | 4.2:+12263283 | MS.gene53494:CDS |
| GGTAGCAACTACAAAGCTTT+TGG | 0.318946 | 4.2:-12262795 | None:intergenic |
| ATGATAGCAATGGATATATT+AGG | 0.342029 | 4.2:+12263071 | MS.gene53494:CDS |
| CCTTAATAGCTTCTTTCATT+GGG | 0.354084 | 4.2:+12263384 | MS.gene53494:CDS |
| ATGGTAATTCACATGCAAAA+TGG | 0.384012 | 4.2:+12263312 | MS.gene53494:CDS |
| TTGGGTGAATTAGATGGCTT+TGG | 0.384488 | 4.2:+12263235 | MS.gene53494:intron |
| GTTAATTGCGATTTAGTTTG+AGG | 0.384618 | 4.2:-12263451 | None:intergenic |
| GATCCAATCCTTCTTTGGTT+TGG | 0.385867 | 4.2:-12262699 | None:intergenic |
| CAGTAAGAGGAACTGTAATT+GGG | 0.394934 | 4.2:-12262829 | None:intergenic |
| TAGTTTGAGGAGTTTGTTGA+TGG | 0.399777 | 4.2:-12263438 | None:intergenic |
| GCAACATTTATGTCAGAATT+GGG | 0.419599 | 4.2:+12263284 | MS.gene53494:CDS |
| GACTCAAATTTCATAACAAA+GGG | 0.455425 | 4.2:+12263093 | MS.gene53494:CDS |
| TCCTGAGACCAAACCAAAGA+AGG | 0.459469 | 4.2:+12262691 | MS.gene53494:CDS |
| TGCTGAAACTTGGCAGTAAG+AGG | 0.478796 | 4.2:-12262842 | None:intergenic |
| ACCACCACCTCTGTTGCAAT+AGG | 0.484004 | 4.2:-12263360 | None:intergenic |
| CAACCACCCTAAGGGACAAA+AGG | 0.486521 | 4.2:-12262721 | None:intergenic |
| TTATGGACTAACACAAAAGC+TGG | 0.487148 | 4.2:-12262869 | None:intergenic |
| AGCTGGAGTATGCTGAAACT+TGG | 0.488766 | 4.2:-12262852 | None:intergenic |
| AGACCAAACCAAAGAAGGAT+TGG | 0.490966 | 4.2:+12262696 | MS.gene53494:CDS |
| AGCTTTGTAGTTGCTACCAT+TGG | 0.493742 | 4.2:+12262800 | MS.gene53494:CDS |
| GGACTCAAATTTCATAACAA+AGG | 0.497208 | 4.2:+12263092 | MS.gene53494:CDS |
| ATGTCAGAATTGGGAAGGAA+TGG | 0.507856 | 4.2:+12263293 | MS.gene53494:CDS |
| TACACTATCACAATGGCCTC+AGG | 0.512074 | 4.2:+12262632 | None:intergenic |
| TAATTTGGTTATGATAGCAA+TGG | 0.531106 | 4.2:+12263061 | MS.gene53494:CDS |
| ATGAAGACTGACAATTCCAT+TGG | 0.535909 | 4.2:-12263039 | None:intergenic |
| TCCTATTGCAACAGAGGTGG+TGG | 0.560694 | 4.2:+12263359 | MS.gene53494:CDS |
| AGGTACTTTGTGGTAGCCAA+TGG | 0.565693 | 4.2:+12263023 | MS.gene53494:intron |
| GCTCTAGCATCAAGTGGAGA+TGG | 0.573326 | 4.2:+12263257 | MS.gene53494:CDS |
| TGTAATTGGGGTGCTACCAA+TGG | 0.595649 | 4.2:-12262816 | None:intergenic |
| TTTGAGTCCTATTGCAACAG+AGG | 0.599496 | 4.2:+12263353 | MS.gene53494:CDS |
| CATTTATGTCAGAATTGGGA+AGG | 0.599985 | 4.2:+12263288 | MS.gene53494:CDS |
| ATACTGCAATCAGTGCAAGT+TGG | 0.603365 | 4.2:-12263118 | None:intergenic |
| GAGTCCTATTGCAACAGAGG+TGG | 0.611119 | 4.2:+12263356 | MS.gene53494:CDS |
| AACAAGTGTAGCTGATACAG+TGG | 0.613356 | 4.2:-12262753 | None:intergenic |
| ACATCACTGTAATAATGAGT+AGG | 0.627687 | 4.2:-12263415 | None:intergenic |
| GTGAGAATACAGGTACTTTG+TGG | 0.628246 | 4.2:+12263013 | MS.gene53494:intron |
| GCTTTGGCTCTAGCATCAAG+TGG | 0.633064 | 4.2:+12263251 | MS.gene53494:CDS |
| AGTAAGAGGAACTGTAATTG+GGG | 0.643245 | 4.2:-12262828 | None:intergenic |
| ACTGATTGCAGTATTTGACA+CGG | 0.674366 | 4.2:+12263127 | MS.gene53494:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTAGAGAGATTTTA+TGG | - | chr4.2:12262889-12262908 | None:intergenic | 15.0% |
| !! | TAACTTAAATGATCAATTAG+AGG | - | chr4.2:12263169-12263188 | None:intergenic | 20.0% |
| ! | AATGAAGAAAAAATAGAGTC+TGG | + | chr4.2:12262656-12262675 | MS.gene53494:CDS | 25.0% |
| ! | AATTGTCAGTCTTCATAATT+TGG | + | chr4.2:12263046-12263065 | MS.gene53494:CDS | 25.0% |
| ! | ATGATAGCAATGGATATATT+AGG | + | chr4.2:12263071-12263090 | MS.gene53494:CDS | 25.0% |
| ! | GACTCAAATTTCATAACAAA+GGG | + | chr4.2:12263093-12263112 | MS.gene53494:CDS | 25.0% |
| ! | TAATTTGGTTATGATAGCAA+TGG | + | chr4.2:12263061-12263080 | MS.gene53494:CDS | 25.0% |
| ! | TCACCACAAATTAAATCATA+AGG | - | chr4.2:12262997-12263016 | None:intergenic | 25.0% |
| !!! | TATTTTTTCTTCATTTCCTG+AGG | - | chr4.2:12262651-12262670 | None:intergenic | 25.0% |
| !!! | TCACCTTATGATTTAATTTG+TGG | + | chr4.2:12262991-12263010 | MS.gene53494:intron | 25.0% |
| ACATCACTGTAATAATGAGT+AGG | - | chr4.2:12263418-12263437 | None:intergenic | 30.0% | |
| AGCAACATTTATGTCAGAAT+TGG | + | chr4.2:12263283-12263302 | MS.gene53494:CDS | 30.0% | |
| ATGGTAATTCACATGCAAAA+TGG | + | chr4.2:12263312-12263331 | MS.gene53494:CDS | 30.0% | |
| CCTTAATAGCTTCTTTCATT+GGG | + | chr4.2:12263384-12263403 | MS.gene53494:CDS | 30.0% | |
| GATTAATTGGGTGAATTAGA+TGG | + | chr4.2:12263229-12263248 | MS.gene53494:intron | 30.0% | |
| GCAACATTTATGTCAGAATT+GGG | + | chr4.2:12263284-12263303 | MS.gene53494:CDS | 30.0% | |
| GGACTCAAATTTCATAACAA+AGG | + | chr4.2:12263092-12263111 | MS.gene53494:CDS | 30.0% | |
| !! | TAGATACAGAAGTGTTAGAA+AGG | - | chr4.2:12262912-12262931 | None:intergenic | 30.0% |
| !! | TTAATTTGTGGTGAGAATAC+AGG | + | chr4.2:12263003-12263022 | MS.gene53494:intron | 30.0% |
| AAAAGGATCCAATCCTTCTT+TGG | - | chr4.2:12262707-12262726 | None:intergenic | 35.0% | |
| ACTGATTGCAGTATTTGACA+CGG | + | chr4.2:12263127-12263146 | MS.gene53494:CDS | 35.0% | |
| AGTAAGAGGAACTGTAATTG+GGG | - | chr4.2:12262831-12262850 | None:intergenic | 35.0% | |
| ATGAAGACTGACAATTCCAT+TGG | - | chr4.2:12263042-12263061 | None:intergenic | 35.0% | |
| CAGTAAGAGGAACTGTAATT+GGG | - | chr4.2:12262832-12262851 | None:intergenic | 35.0% | |
| CATTTATGTCAGAATTGGGA+AGG | + | chr4.2:12263288-12263307 | MS.gene53494:CDS | 35.0% | |
| CCCAATGAAAGAAGCTATTA+AGG | - | chr4.2:12263387-12263406 | None:intergenic | 35.0% | |
| GCCTTAATAGCTTCTTTCAT+TGG | + | chr4.2:12263383-12263402 | MS.gene53494:CDS | 35.0% | |
| ! | TTATGGACTAACACAAAAGC+TGG | - | chr4.2:12262872-12262891 | None:intergenic | 35.0% |
| !! | TAGTTTGAGGAGTTTGTTGA+TGG | - | chr4.2:12263441-12263460 | None:intergenic | 35.0% |
| AACAAGTGTAGCTGATACAG+TGG | - | chr4.2:12262756-12262775 | None:intergenic | 40.0% | |
| AGACCAAACCAAAGAAGGAT+TGG | + | chr4.2:12262696-12262715 | MS.gene53494:CDS | 40.0% | |
| ATACTGCAATCAGTGCAAGT+TGG | - | chr4.2:12263121-12263140 | None:intergenic | 40.0% | |
| ATGTCAGAATTGGGAAGGAA+TGG | + | chr4.2:12263293-12263312 | MS.gene53494:CDS | 40.0% | |
| CAAAAATGCAACCACCCTAA+GGG | - | chr4.2:12262732-12262751 | None:intergenic | 40.0% | |
| GATCCAATCCTTCTTTGGTT+TGG | - | chr4.2:12262702-12262721 | None:intergenic | 40.0% | |
| GCAGTAAGAGGAACTGTAAT+TGG | - | chr4.2:12262833-12262852 | None:intergenic | 40.0% | |
| GTGAGAATACAGGTACTTTG+TGG | + | chr4.2:12263013-12263032 | MS.gene53494:intron | 40.0% | |
| TTGGGTGAATTAGATGGCTT+TGG | + | chr4.2:12263235-12263254 | MS.gene53494:intron | 40.0% | |
| TTTGAGTCCTATTGCAACAG+AGG | + | chr4.2:12263353-12263372 | MS.gene53494:CDS | 40.0% | |
| ! | AGCTTTGTAGTTGCTACCAT+TGG | + | chr4.2:12262800-12262819 | MS.gene53494:CDS | 40.0% |
| ! | ATTGGATCCTTTTGTCCCTT+AGG | + | chr4.2:12262714-12262733 | MS.gene53494:CDS | 40.0% |
| ! | GGTAGCAACTACAAAGCTTT+TGG | - | chr4.2:12262798-12262817 | None:intergenic | 40.0% |
| ! | TTGGATCCTTTTGTCCCTTA+GGG | + | chr4.2:12262715-12262734 | MS.gene53494:CDS | 40.0% |
| AGCTGGAGTATGCTGAAACT+TGG | - | chr4.2:12262855-12262874 | None:intergenic | 45.0% | |
| AGGTACTTTGTGGTAGCCAA+TGG | + | chr4.2:12263023-12263042 | MS.gene53494:intron | 45.0% | |
| CCAAAAATGCAACCACCCTA+AGG | - | chr4.2:12262733-12262752 | None:intergenic | 45.0% | |
| TCCTGAGACCAAACCAAAGA+AGG | + | chr4.2:12262691-12262710 | MS.gene53494:CDS | 45.0% | |
| TGCTGAAACTTGGCAGTAAG+AGG | - | chr4.2:12262845-12262864 | None:intergenic | 45.0% | |
| ! | CCTTAGGGTGGTTGCATTTT+TGG | + | chr4.2:12262730-12262749 | MS.gene53494:CDS | 45.0% |
| ! | TGTAATTGGGGTGCTACCAA+TGG | - | chr4.2:12262819-12262838 | None:intergenic | 45.0% |
| !! | TCCTTCTTTGGTTTGGTCTC+AGG | - | chr4.2:12262695-12262714 | None:intergenic | 45.0% |
| !!! | ATTATATTTTTTTGATTAAT+TGG | + | chr4.2:12263216-12263235 | MS.gene53494:intron | 5.0% |
| !!! | TTATATTTTTTTGATTAATT+GGG | + | chr4.2:12263217-12263236 | MS.gene53494:intron | 5.0% |
| ACCACCACCTCTGTTGCAAT+AGG | - | chr4.2:12263363-12263382 | None:intergenic | 50.0% | |
| CAACCACCCTAAGGGACAAA+AGG | - | chr4.2:12262724-12262743 | None:intergenic | 50.0% | |
| GAGTCCTATTGCAACAGAGG+TGG | + | chr4.2:12263356-12263375 | MS.gene53494:CDS | 50.0% | |
| GCTCTAGCATCAAGTGGAGA+TGG | + | chr4.2:12263257-12263276 | MS.gene53494:CDS | 50.0% | |
| TCCTATTGCAACAGAGGTGG+TGG | + | chr4.2:12263359-12263378 | MS.gene53494:CDS | 50.0% | |
| ! | GATCCTTTTGTCCCTTAGGG+TGG | + | chr4.2:12262718-12262737 | MS.gene53494:CDS | 50.0% |
| !! | GCTTTGGCTCTAGCATCAAG+TGG | + | chr4.2:12263251-12263270 | MS.gene53494:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 12262644 | 12263472 | 12262644 | ID=MS.gene53494 |
| chr4.2 | mRNA | 12262644 | 12263472 | 12262644 | ID=MS.gene53494.t1;Parent=MS.gene53494 |
| chr4.2 | exon | 12262644 | 12262879 | 12262644 | ID=MS.gene53494.t1.exon1;Parent=MS.gene53494.t1 |
| chr4.2 | CDS | 12262644 | 12262879 | 12262644 | ID=cds.MS.gene53494.t1;Parent=MS.gene53494.t1 |
| chr4.2 | exon | 12263025 | 12263148 | 12263025 | ID=MS.gene53494.t1.exon2;Parent=MS.gene53494.t1 |
| chr4.2 | CDS | 12263025 | 12263148 | 12263025 | ID=cds.MS.gene53494.t1;Parent=MS.gene53494.t1 |
| chr4.2 | exon | 12263248 | 12263472 | 12263248 | ID=MS.gene53494.t1.exon3;Parent=MS.gene53494.t1 |
| chr4.2 | CDS | 12263248 | 12263472 | 12263248 | ID=cds.MS.gene53494.t1;Parent=MS.gene53494.t1 |
| Gene Sequence |
| Protein sequence |
