AlfalfaGEDB | MS.gene53494

M. sativa cultivar XinJiangDaYe / MS.gene53494

KEGG: -
GO: -
PFAM: PF04535.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53494.t1	RHN42810.1	96.9	194	6	0	1	194	1	194	2.20E-93	351.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53494.t1	C6TG62	68.4	193	61	0	1	193	1	193	5.9e-71	268.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53494.t1	A0A396GP31	96.9	194	6	0	1	194	1	194	1.6e-93	351.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050082	MS.gene53494	0.887395	1.48E-72	-1.69E-46
MS.gene050338	MS.gene53494	0.811765	5.94E-51	-1.69E-46
MS.gene05104	MS.gene53494	0.803732	3.03E-49	-1.69E-46
MS.gene051138	MS.gene53494	0.838904	2.18E-57	-1.69E-46
MS.gene051364	MS.gene53494	0.817321	3.50E-52	-1.69E-46
MS.gene051366	MS.gene53494	0.811983	5.33E-51	-1.69E-46
MS.gene051367	MS.gene53494	0.803973	2.70E-49	-1.69E-46
MS.gene051422	MS.gene53494	0.835842	1.33E-56	-1.69E-46
MS.gene051651	MS.gene53494	0.813089	3.05E-51	-1.69E-46
MS.gene05240	MS.gene53494	0.803113	4.07E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53494.t1	MTR_8g089300	95.876	194	8	0	1	194	1	194	5.61e-127	355
MS.gene53494.t1	MTR_0097s0070	75.773	194	46	1	1	193	1	194	1.98e-97	281
MS.gene53494.t1	MTR_4g118810	36.111	144	90	2	28	170	35	177	3.66e-25	97.1
MS.gene53494.t1	MTR_0004s0210	35.185	162	89	2	28	189	10	155	1.11e-23	92.4
MS.gene53494.t1	MTR_2g020060	35.260	173	92	4	30	194	27	187	2.13e-23	92.4
MS.gene53494.t1	MTR_7g108130	32.778	180	114	3	16	194	18	191	2.24e-23	92.4
MS.gene53494.t1	MTR_4g081880	29.630	189	106	6	9	184	6	180	2.72e-16	73.6
MS.gene53494.t1	MTR_4g118800	30.159	126	87	1	64	188	56	181	2.81e-16	73.6
MS.gene53494.t1	MTR_7g011090	28.387	155	104	1	30	184	32	179	8.16e-16	72.4
MS.gene53494.t1	MTR_5g041900	28.387	155	104	1	30	184	32	179	5.18e-13	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53494.t1	AT5G44550	53.714	175	81	0	19	193	11	185	5.24e-61	189
MS.gene53494.t1	AT4G20390	55.491	173	76	1	23	194	14	186	2.38e-55	174
MS.gene53494.t1	AT4G15610	33.803	142	89	3	30	170	33	170	1.48e-20	85.1
MS.gene53494.t1	AT1G03700	30.189	159	95	2	28	186	11	153	1.09e-19	82.0
MS.gene53494.t1	AT4G15630	31.481	162	109	2	28	188	29	189	1.23e-19	82.4
MS.gene53494.t1	AT1G14160	32.121	165	102	2	30	194	55	209	3.87e-19	81.6
MS.gene53494.t1	AT4G15620	29.341	167	116	2	23	188	24	189	1.12e-18	80.1
MS.gene53494.t1	AT5G15290	30.114	176	108	4	1	171	1	166	1.86e-17	76.6
MS.gene53494.t1	AT3G06390	31.061	132	87	2	31	161	42	170	3.20e-14	68.6
MS.gene53494.t1	AT4G03540	28.244	131	78	2	43	173	26	140	1.53e-13	65.9

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Find 45 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATCCAATCCTTCTT+TGG	0.280238	4.2:-12262704	None:intergenic
AACAAGTGTAGCTGATACAG+TGG	0.613356	4.2:-12262753	None:intergenic
AATTGTCAGTCTTCATAATT+TGG	0.186212	4.2:+12263046	MS.gene53494:CDS
ACATCACTGTAATAATGAGT+AGG	0.627687	4.2:-12263415	None:intergenic
ACCACCACCTCTGTTGCAAT+AGG	0.484004	4.2:-12263360	None:intergenic
ACTGATTGCAGTATTTGACA+CGG	0.674366	4.2:+12263127	MS.gene53494:CDS
AGACCAAACCAAAGAAGGAT+TGG	0.490966	4.2:+12262696	MS.gene53494:CDS
AGCAACATTTATGTCAGAAT+TGG	0.314088	4.2:+12263283	MS.gene53494:CDS
AGCTGGAGTATGCTGAAACT+TGG	0.488766	4.2:-12262852	None:intergenic
AGCTTTGTAGTTGCTACCAT+TGG	0.493742	4.2:+12262800	MS.gene53494:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATCACTGTAATAATGAGT+AGG	-	chr4.2:12263418-12263437	None:intergenic	30.0%
AGCAACATTTATGTCAGAAT+TGG	+	chr4.2:12263283-12263302	MS.gene53494:CDS	30.0%
ATGGTAATTCACATGCAAAA+TGG	+	chr4.2:12263312-12263331	MS.gene53494:CDS	30.0%
CCTTAATAGCTTCTTTCATT+GGG	+	chr4.2:12263384-12263403	MS.gene53494:CDS	30.0%
GATTAATTGGGTGAATTAGA+TGG	+	chr4.2:12263229-12263248	MS.gene53494:intron	30.0%
GCAACATTTATGTCAGAATT+GGG	+	chr4.2:12263284-12263303	MS.gene53494:CDS	30.0%
GGACTCAAATTTCATAACAA+AGG	+	chr4.2:12263092-12263111	MS.gene53494:CDS	30.0%
AAAAGGATCCAATCCTTCTT+TGG	-	chr4.2:12262707-12262726	None:intergenic	35.0%
ACTGATTGCAGTATTTGACA+CGG	+	chr4.2:12263127-12263146	MS.gene53494:CDS	35.0%
AGTAAGAGGAACTGTAATTG+GGG	-	chr4.2:12262831-12262850	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	12262644	12263472	12262644	ID=MS.gene53494
chr4.2	mRNA	12262644	12263472	12262644	ID=MS.gene53494.t1;Parent=MS.gene53494
chr4.2	exon	12262644	12262879	12262644	ID=MS.gene53494.t1.exon1;Parent=MS.gene53494.t1
chr4.2	CDS	12262644	12262879	12262644	ID=cds.MS.gene53494.t1;Parent=MS.gene53494.t1
chr4.2	exon	12263025	12263148	12263025	ID=MS.gene53494.t1.exon2;Parent=MS.gene53494.t1
chr4.2	CDS	12263025	12263148	12263025	ID=cds.MS.gene53494.t1;Parent=MS.gene53494.t1
chr4.2	exon	12263248	12263472	12263248	ID=MS.gene53494.t1.exon3;Parent=MS.gene53494.t1
chr4.2	CDS	12263248	12263472	12263248	ID=cds.MS.gene53494.t1;Parent=MS.gene53494.t1

Gene Sequence

>MS.gene53494

ATGGCCTCAGGAAATGAAGAAAAAATAGAGTCTGGTTTCAATGTTGTTCCTGAGACCAAACCAAAGAAGGATTGGATCCTTTTGTCCCTTAGGGTGGTTGCATTTTTGGCCACTGTATCAGCTACACTTGTTATGTCACTCAACAAACAAACCAAAAGCTTTGTAGTTGCTACCATTGGTAGCACCCCAATTACAGTTCCTCTTACTGCCAAGTTTCAGCATACTCCAGCTTTTGTGTTAGTCCATAAAATCTCTCTAATTTAAACCTTTCTAACACTTCTGTATCTAAACATTTTCATTGAAAAATTAACTTAATAGTGATAATAATATTATTAGACATTTAATTTTCACCTTATGATTTAATTTGTGGTGAGAATACAGGTACTTTGTGGTAGCCAATGGAATTGTCAGTCTTCATAATTTGGTTATGATAGCAATGGATATATTAGGACTCAAATTTCATAACAAAGGGCTCCAACTTGCACTGATTGCAGTATTTGACACGGTACAAAATAAATGACACCTCTAATTGATCATTTAAGTTAAAATTACTAACATATGAGAACTGATTGATTATATTTTTTTGATTAATTGGGTGAATTAGATGGCTTTGGCTCTAGCATCAAGTGGAGATGGTGCAGCAACATTTATGTCAGAATTGGGAAGGAATGGTAATTCACATGCAAAATGGAATAAAATATGTGACAAATTTGAGTCCTATTGCAACAGAGGTGGTGGTGCCTTAATAGCTTCTTTCATTGGGCTCATTCTCCTACTCATTATTACAGTGATGTCCATCAACAAACTCCTCAAACTAAATCGCAATTAA

Protein sequence

>MS.gene53494.t1

MASGNEEKIESGFNVVPETKPKKDWILLSLRVVAFLATVSATLVMSLNKQTKSFVVATIGSTPITVPLTAKFQHTPAFVYFVVANGIVSLHNLVMIAMDILGLKFHNKGLQLALIAVFDTMALALASSGDGAATFMSELGRNGNSHAKWNKICDKFESYCNRGGGALIASFIGLILLLIITVMSINKLLKLNRN