Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54430.t1 | KEH21484.1 | 98.6 | 213 | 3 | 0 | 2 | 214 | 12 | 224 | 3.50E-116 | 427.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54430.t1 | Q3UDW8 | 30.2 | 222 | 121 | 9 | 3 | 208 | 274 | 477 | 3.3e-14 | 80.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54430.t1 | A0A072TVF5 | 98.6 | 213 | 3 | 0 | 2 | 214 | 12 | 224 | 2.5e-116 | 427.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene54430 | 0.809371 | 1.96E-50 | -1.69E-46 |
| MS.gene049910 | MS.gene54430 | 0.805319 | 1.41E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene54430 | -0.841983 | 3.41E-58 | -1.69E-46 |
| MS.gene050529 | MS.gene54430 | 0.806999 | 6.26E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene54430 | 0.842931 | 1.91E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene54430 | 0.8031 | 4.09E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene54430 | 0.856938 | 2.29E-62 | -1.69E-46 |
| MS.gene052011 | MS.gene54430 | -0.801532 | 8.61E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene54430 | 0.864231 | 1.41E-64 | -1.69E-46 |
| MS.gene052134 | MS.gene54430 | 0.81886 | 1.57E-52 | -1.69E-46 |
| MS.gene052135 | MS.gene54430 | 0.823908 | 1.08E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene54430 | 0.820275 | 7.48E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene54430 | 0.850955 | 1.21E-60 | -1.69E-46 |
| MS.gene053330 | MS.gene54430 | 0.834395 | 3.07E-56 | -1.69E-46 |
| MS.gene053557 | MS.gene54430 | 0.814776 | 1.30E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene54430 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene053928 | MS.gene54430 | 0.819856 | 9.32E-53 | -1.69E-46 |
| MS.gene053971 | MS.gene54430 | 0.807275 | 5.47E-50 | -1.69E-46 |
| MS.gene054110 | MS.gene54430 | 0.814734 | 1.32E-51 | -1.69E-46 |
| MS.gene054349 | MS.gene54430 | 0.839951 | 1.17E-57 | -1.69E-46 |
| MS.gene054719 | MS.gene54430 | 0.841938 | 3.51E-58 | -1.69E-46 |
| MS.gene054930 | MS.gene54430 | 0.811426 | 7.04E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene54430 | 0.882183 | 1.29E-70 | -1.69E-46 |
| MS.gene055946 | MS.gene54430 | 0.804085 | 2.56E-49 | -1.69E-46 |
| MS.gene056633 | MS.gene54430 | 0.806007 | 1.01E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene54430 | 0.812474 | 4.16E-51 | -1.69E-46 |
| MS.gene056664 | MS.gene54430 | 0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene056723 | MS.gene54430 | 0.815435 | 9.26E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene54430 | -0.818343 | 2.06E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene54430 | 0.842494 | 2.50E-58 | -1.69E-46 |
| MS.gene05702 | MS.gene54430 | 0.822944 | 1.81E-53 | -1.69E-46 |
| MS.gene057396 | MS.gene54430 | 0.84498 | 5.40E-59 | -1.69E-46 |
| MS.gene058002 | MS.gene54430 | 0.808947 | 2.41E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene54430 | 0.850659 | 1.47E-60 | -1.69E-46 |
| MS.gene058371 | MS.gene54430 | 0.803547 | 3.31E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene54430 | 0.816146 | 6.43E-52 | -1.69E-46 |
| MS.gene058746 | MS.gene54430 | 0.80052 | 1.39E-48 | -1.69E-46 |
| MS.gene059011 | MS.gene54430 | 0.80327 | 3.78E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene54430 | 0.80584 | 1.10E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene54430 | 0.836275 | 1.03E-56 | -1.69E-46 |
| MS.gene059420 | MS.gene54430 | 0.818615 | 1.79E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene54430 | 0.81131 | 7.46E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene54430 | 0.84616 | 2.59E-59 | -1.69E-46 |
| MS.gene060407 | MS.gene54430 | 0.866894 | 2.04E-65 | -1.69E-46 |
| MS.gene061049 | MS.gene54430 | 0.84848 | 5.97E-60 | -1.69E-46 |
| MS.gene061159 | MS.gene54430 | 0.845457 | 4.01E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54430.t1 | MTR_7g406840 | 98.592 | 213 | 3 | 0 | 2 | 214 | 12 | 224 | 4.01e-153 | 430 |
| MS.gene54430.t1 | MTR_3g117990 | 46.512 | 215 | 106 | 3 | 3 | 210 | 33 | 245 | 6.88e-68 | 210 |
| MS.gene54430.t1 | MTR_3g117990 | 46.512 | 215 | 106 | 3 | 3 | 210 | 33 | 245 | 5.46e-67 | 211 |
| MS.gene54430.t1 | MTR_3g117990 | 46.512 | 215 | 106 | 3 | 3 | 210 | 33 | 245 | 7.39e-67 | 211 |
| MS.gene54430.t1 | MTR_1g087750 | 50.467 | 214 | 103 | 2 | 3 | 213 | 58 | 271 | 6.48e-66 | 211 |
| MS.gene54430.t1 | MTR_7g112720 | 49.541 | 218 | 105 | 2 | 1 | 213 | 42 | 259 | 2.36e-62 | 201 |
| MS.gene54430.t1 | MTR_7g102840 | 47.887 | 213 | 107 | 3 | 3 | 212 | 75 | 286 | 4.93e-61 | 199 |
| MS.gene54430.t1 | MTR_1g062970 | 50.467 | 214 | 99 | 5 | 3 | 212 | 78 | 288 | 2.31e-60 | 196 |
| MS.gene54430.t1 | MTR_7g102870 | 47.170 | 212 | 107 | 4 | 3 | 210 | 76 | 286 | 1.28e-59 | 194 |
| MS.gene54430.t1 | MTR_1g087750 | 42.586 | 263 | 99 | 4 | 3 | 213 | 58 | 320 | 1.44e-59 | 195 |
| MS.gene54430.t1 | MTR_7g112720 | 43.750 | 128 | 67 | 2 | 91 | 213 | 1 | 128 | 4.17e-28 | 108 |
| MS.gene54430.t1 | MTR_6g045583 | 49.412 | 85 | 20 | 2 | 52 | 130 | 22 | 89 | 5.12e-13 | 66.2 |
| MS.gene54430.t1 | MTR_5g049870 | 49.412 | 85 | 20 | 2 | 52 | 130 | 22 | 89 | 6.34e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54430.t1 | AT5G47900 | 62.736 | 212 | 78 | 1 | 3 | 213 | 59 | 270 | 6.61e-93 | 274 |
| MS.gene54430.t1 | AT5G47900 | 61.395 | 215 | 79 | 1 | 3 | 213 | 59 | 273 | 3.71e-92 | 272 |
| MS.gene54430.t1 | AT5G47900 | 61.395 | 215 | 79 | 1 | 3 | 213 | 59 | 273 | 3.54e-90 | 269 |
| MS.gene54430.t1 | AT5G47900 | 61.395 | 215 | 79 | 1 | 3 | 213 | 59 | 273 | 6.51e-90 | 270 |
| MS.gene54430.t1 | AT5G47900 | 61.682 | 214 | 78 | 1 | 4 | 213 | 1 | 214 | 8.41e-90 | 269 |
| MS.gene54430.t1 | AT5G47900 | 61.395 | 215 | 79 | 1 | 3 | 213 | 59 | 273 | 2.33e-89 | 270 |
| MS.gene54430.t1 | AT5G47900 | 61.395 | 215 | 79 | 1 | 3 | 213 | 59 | 273 | 3.57e-89 | 269 |
| MS.gene54430.t1 | AT5G47900 | 61.395 | 215 | 79 | 1 | 3 | 213 | 59 | 273 | 3.57e-89 | 269 |
| MS.gene54430.t1 | AT5G47900 | 61.395 | 215 | 79 | 1 | 3 | 213 | 53 | 267 | 5.68e-89 | 268 |
| MS.gene54430.t1 | AT5G27730 | 49.309 | 217 | 106 | 2 | 1 | 213 | 48 | 264 | 8.17e-68 | 212 |
| MS.gene54430.t1 | AT5G27730 | 49.309 | 217 | 106 | 2 | 1 | 213 | 48 | 264 | 1.29e-67 | 212 |
| MS.gene54430.t1 | AT5G27730 | 49.767 | 215 | 104 | 2 | 3 | 213 | 50 | 264 | 1.22e-66 | 212 |
| MS.gene54430.t1 | AT5G47900 | 58.642 | 162 | 63 | 1 | 56 | 213 | 12 | 173 | 3.12e-58 | 187 |
| MS.gene54430.t1 | AT5G27730 | 43.429 | 175 | 95 | 2 | 43 | 213 | 9 | 183 | 1.04e-42 | 146 |
| MS.gene54430.t1 | AT5G27730 | 43.429 | 175 | 95 | 2 | 43 | 213 | 9 | 183 | 4.82e-42 | 146 |
| MS.gene54430.t1 | AT5G47900 | 53.933 | 89 | 37 | 1 | 129 | 213 | 1 | 89 | 6.08e-31 | 114 |
Find 48 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGCTCTCTGTGAAATT+TGG | 0.205026 | 7.3:-91288654 | MS.gene54430:CDS |
| CGTGAAGATATCGTTAATTC+TGG | 0.293626 | 7.3:-91288625 | MS.gene54430:CDS |
| CGCGTTAGTGATTTGACGTT+TGG | 0.319191 | 7.3:-91288836 | MS.gene54430:CDS |
| ATTTATCTTTGCTTGCTGTA+TGG | 0.319433 | 7.3:-91288331 | MS.gene54430:CDS |
| CTCAATGCAGCTTATGATAT+TGG | 0.322014 | 7.3:-91289644 | None:intergenic |
| GCGCTTAAGCTTCTTGCATT+AGG | 0.338601 | 7.3:-91289266 | MS.gene54430:CDS |
| TTTATCTTTGCTTGCTGTAT+GGG | 0.383070 | 7.3:-91288330 | MS.gene54430:CDS |
| GATATCGATACTTTCTCAAA+AGG | 0.392446 | 7.3:+91288596 | None:intergenic |
| ACAGGCGCCCGTGCATATAT+TGG | 0.393241 | 7.3:+91288020 | None:intergenic |
| TTTGAAGCAGATAAGGTTGA+TGG | 0.407438 | 7.3:-91288807 | MS.gene54430:CDS |
| ACACTCACAGAAAATTTCAT+AGG | 0.413861 | 7.3:+91288256 | None:intergenic |
| GATCATTCCAACGACATTGC+AGG | 0.438809 | 7.3:+91288082 | None:intergenic |
| GAGTGGATTTGAAGCAGATA+AGG | 0.447061 | 7.3:-91288814 | MS.gene54430:CDS |
| ATGATCGATCGTAGCTTGTT+GGG | 0.449187 | 7.3:-91288065 | MS.gene54430:CDS |
| TGGGATGTACGTTCCCGATT+GGG | 0.453793 | 7.3:-91288311 | MS.gene54430:CDS |
| AATGATCGATCGTAGCTTGT+TGG | 0.458059 | 7.3:-91288066 | MS.gene54430:CDS |
| AATTTCATAGGTTCTGAAGA+AGG | 0.469705 | 7.3:+91288268 | None:intergenic |
| GTCGCATCAACTTTGCAAGA+TGG | 0.475648 | 7.3:+91289308 | None:intergenic |
| TGAGAAAGTATCGATATCAA+TGG | 0.477114 | 7.3:-91288591 | MS.gene54430:intron |
| ATGATATTGGTGGATGATGC+TGG | 0.492588 | 7.3:-91289631 | MS.gene54430:CDS |
| ATATCGATACTTTCTCAAAA+GGG | 0.495414 | 7.3:+91288597 | None:intergenic |
| ATGGGATGTACGTTCCCGAT+TGG | 0.499827 | 7.3:-91288312 | MS.gene54430:CDS |
| GGTTCTGAAGAAGGTTCTGT+TGG | 0.504371 | 7.3:+91288277 | None:intergenic |
| TGGAACTTCATACTCCCAAT+CGG | 0.507436 | 7.3:+91288297 | None:intergenic |
| TGGGTTTACAACATCTATAC+CGG | 0.509722 | 7.3:-91288046 | MS.gene54430:CDS |
| CAAAGTTGATGCGACTAGAA+AGG | 0.510229 | 7.3:-91289300 | MS.gene54430:CDS |
| GCTATTGTTAAACCATTCCA+TGG | 0.518565 | 7.3:+91289580 | None:intergenic |
| CTCAATCATTCTCCATGGAA+TGG | 0.518820 | 7.3:-91289592 | MS.gene54430:CDS |
| TGCACTAGCATTCACATACA+AGG | 0.532824 | 7.3:-91289518 | MS.gene54430:intron |
| CATGGAGAATGATTGAGTGC+TGG | 0.551745 | 7.3:+91289598 | None:intergenic |
| AAGGTTGATGGGAATACTGC+AGG | 0.554486 | 7.3:-91288795 | MS.gene54430:intron |
| GGACCAGCCTGCAATGTCGT+TGG | 0.555369 | 7.3:-91288089 | MS.gene54430:CDS |
| TTGAAGCAGATAAGGTTGAT+GGG | 0.558495 | 7.3:-91288806 | MS.gene54430:CDS |
| TAGTGATTTGACGTTTGGAG+TGG | 0.558670 | 7.3:-91288831 | MS.gene54430:CDS |
| TGTGGAGTAAGAGGCGACAC+TGG | 0.561390 | 7.3:-91288110 | MS.gene54430:CDS |
| TAGGTTAAATGTGGAGTAAG+AGG | 0.567721 | 7.3:-91288119 | MS.gene54430:CDS |
| GGAACTTCATACTCCCAATC+GGG | 0.571048 | 7.3:+91288298 | None:intergenic |
| AAGAGTATAGAGGATCATAC+AGG | 0.584173 | 7.3:+91288002 | None:intergenic |
| CAGCACTCAATCATTCTCCA+TGG | 0.586892 | 7.3:-91289597 | MS.gene54430:CDS |
| CCCGTGCATATATTGGTCTC+CGG | 0.589463 | 7.3:+91288027 | None:intergenic |
| AATGCAGCTTATGATATTGG+TGG | 0.594795 | 7.3:-91289641 | MS.gene54430:CDS |
| ATTCCAACGACATTGCAGGC+TGG | 0.596770 | 7.3:+91288086 | None:intergenic |
| ACCGGAGACCAATATATGCA+CGG | 0.621670 | 7.3:-91288028 | MS.gene54430:CDS |
| CCGGAGACCAATATATGCAC+GGG | 0.629013 | 7.3:-91288027 | MS.gene54430:CDS |
| AACATGTGTTAGGTTAAATG+TGG | 0.637640 | 7.3:-91288128 | MS.gene54430:intron |
| TCATTGGATGCAGAGAATTG+CGG | 0.648931 | 7.3:-91288689 | MS.gene54430:intron |
| AGTTGATGCGACTAGAAAGG+CGG | 0.689224 | 7.3:-91289297 | MS.gene54430:CDS |
| ATATTGGTGGATGATGCTGG+TGG | 0.716550 | 7.3:-91289628 | MS.gene54430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTGAATATAACA+GGG | - | chr7.3:91289279-91289298 | MS.gene54430:CDS | 10.0% |
| !!! | TATTTTTTTTTGAATATAAC+AGG | - | chr7.3:91289278-91289297 | MS.gene54430:CDS | 10.0% |
| !!! | CAATTTAACTTCTTATATAT+TGG | - | chr7.3:91289477-91289496 | MS.gene54430:intron | 15.0% |
| !!! | GAATTTTAGTTTCTTAATAT+AGG | - | chr7.3:91289107-91289126 | MS.gene54430:intron | 15.0% |
| !!! | TCATTCTTTATTTATTTCAT+TGG | - | chr7.3:91288951-91288970 | MS.gene54430:intron | 15.0% |
| !! | ATATAGATCAAAGAATTCAA+AGG | + | chr7.3:91288230-91288249 | None:intergenic | 20.0% |
| !! | ATGAATTTAAACTTCCAAAT+AGG | + | chr7.3:91289448-91289467 | None:intergenic | 20.0% |
| !! | CCAACAATAAAAAGAAAAAA+CGG | + | chr7.3:91288115-91288134 | None:intergenic | 20.0% |
| !! | TATCACAAAATTTAAGCAAA+AGG | + | chr7.3:91288442-91288461 | None:intergenic | 20.0% |
| ! | AATGCAATACATTACATACA+TGG | + | chr7.3:91288773-91288792 | None:intergenic | 25.0% |
| ! | ATATCGATACTTTCTCAAAA+GGG | + | chr7.3:91289062-91289081 | None:intergenic | 25.0% |
| ! | CAAAATTTAAGCAAAAGGTT+CGG | + | chr7.3:91288437-91288456 | None:intergenic | 25.0% |
| !! | AAGGTGTTAAAGTAAAATGT+TGG | - | chr7.3:91288518-91288537 | MS.gene54430:intron | 25.0% |
| !! | TTAAAGTAAAATGTTGGTGA+TGG | - | chr7.3:91288524-91288543 | MS.gene54430:intron | 25.0% |
| !! | TTTACATTTTCACACCTATT+TGG | - | chr7.3:91289431-91289450 | MS.gene54430:intron | 25.0% |
| !!! | CCGTTTTTTCTTTTTATTGT+TGG | - | chr7.3:91288112-91288131 | MS.gene54430:CDS | 25.0% |
| !!! | TCTTTTTTTGATGAATGTCA+AGG | - | chr7.3:91288499-91288518 | MS.gene54430:intron | 25.0% |
| !!! | TGTTATTTCACAACATATAC+AGG | + | chr7.3:91288567-91288586 | None:intergenic | 25.0% |
| AAAAGCAACATCACATAACT+AGG | + | chr7.3:91289210-91289229 | None:intergenic | 30.0% | |
| AACATGTGTTAGGTTAAATG+TGG | - | chr7.3:91289528-91289547 | MS.gene54430:CDS | 30.0% | |
| ACACTCACAGAAAATTTCAT+AGG | + | chr7.3:91289403-91289422 | None:intergenic | 30.0% | |
| ATAGTGTATCACAAAACAAC+AGG | + | chr7.3:91288634-91288653 | None:intergenic | 30.0% | |
| GATATCGATACTTTCTCAAA+AGG | + | chr7.3:91289063-91289082 | None:intergenic | 30.0% | |
| TAGTGTATCACAAAACAACA+GGG | + | chr7.3:91288633-91288652 | None:intergenic | 30.0% | |
| TATCTATCTGAACATGTGTT+AGG | - | chr7.3:91289518-91289537 | MS.gene54430:intron | 30.0% | |
| TTCTGTTCAAGAAACAGATA+AGG | + | chr7.3:91288327-91288346 | None:intergenic | 30.0% | |
| TTGTGAAATAACAGCTATAG+CGG | - | chr7.3:91288574-91288593 | MS.gene54430:intron | 30.0% | |
| ! | AACGAAGTTCTAACTTCATA+GGG | + | chr7.3:91288899-91288918 | None:intergenic | 30.0% |
| ! | TTTTGAATATAACAGGGCTT+TGG | - | chr7.3:91289285-91289304 | MS.gene54430:CDS | 30.0% |
| !! | AATTTCATAGGTTCTGAAGA+AGG | + | chr7.3:91289391-91289410 | None:intergenic | 30.0% |
| !! | ATTTATCTTTGCTTGCTGTA+TGG | - | chr7.3:91289325-91289344 | MS.gene54430:intron | 30.0% |
| !! | TGAGAAAGTATCGATATCAA+TGG | - | chr7.3:91289065-91289084 | MS.gene54430:intron | 30.0% |
| !! | TTTATCTTTGCTTGCTGTAT+GGG | - | chr7.3:91289326-91289345 | MS.gene54430:intron | 30.0% |
| CGATCTACGATTGACAAAAT+TGG | - | chr7.3:91288739-91288758 | MS.gene54430:intron | 35.0% | |
| CGTGAAGATATCGTTAATTC+TGG | - | chr7.3:91289031-91289050 | MS.gene54430:intron | 35.0% | |
| GACTTGAGACACAAGTTAAA+GGG | + | chr7.3:91289233-91289252 | None:intergenic | 35.0% | |
| GCTATTGTTAAACCATTCCA+TGG | + | chr7.3:91288079-91288098 | None:intergenic | 35.0% | |
| TAGGTTAAATGTGGAGTAAG+AGG | - | chr7.3:91289537-91289556 | MS.gene54430:CDS | 35.0% | |
| TGACTTGAGACACAAGTTAA+AGG | + | chr7.3:91289234-91289253 | None:intergenic | 35.0% | |
| TGGGTTTACAACATCTATAC+CGG | - | chr7.3:91289610-91289629 | MS.gene54430:CDS | 35.0% | |
| TTACAGCTCTCTGTGAAATT+TGG | - | chr7.3:91289002-91289021 | MS.gene54430:intron | 35.0% | |
| ! | ATTTAAGCAAAAGGTTCGGT+TGG | + | chr7.3:91288433-91288452 | None:intergenic | 35.0% |
| ! | CAACGAAGTTCTAACTTCAT+AGG | + | chr7.3:91288900-91288919 | None:intergenic | 35.0% |
| ! | GCATTAGGCATTTTTCTTCA+AGG | - | chr7.3:91288405-91288424 | MS.gene54430:intron | 35.0% |
| ! | TTGAAGCAGATAAGGTTGAT+GGG | - | chr7.3:91288850-91288869 | MS.gene54430:CDS | 35.0% |
| ! | TTGACGGTTTGTTCAAATTC+CGG | + | chr7.3:91288713-91288732 | None:intergenic | 35.0% |
| ! | TTTGAAGCAGATAAGGTTGA+TGG | - | chr7.3:91288849-91288868 | MS.gene54430:CDS | 35.0% |
| !! | TATTGCATTTTGTCGTTTGC+AGG | - | chr7.3:91288784-91288803 | MS.gene54430:intron | 35.0% |
| !! | TTAACTTGTGTCTCAAGTCA+TGG | - | chr7.3:91289234-91289253 | MS.gene54430:intron | 35.0% |
| CTAGCATTCACATACAAGGT+TGG | - | chr7.3:91288142-91288161 | MS.gene54430:intron | 40.0% | |
| CTCAATCATTCTCCATGGAA+TGG | - | chr7.3:91288064-91288083 | MS.gene54430:CDS | 40.0% | |
| TAGTGATTTGACGTTTGGAG+TGG | - | chr7.3:91288825-91288844 | MS.gene54430:CDS | 40.0% | |
| TCATTGGATGCAGAGAATTG+CGG | - | chr7.3:91288967-91288986 | MS.gene54430:intron | 40.0% | |
| TCGTAGATCGCGTAAATTGA+CGG | + | chr7.3:91288729-91288748 | None:intergenic | 40.0% | |
| TGCACTAGCATTCACATACA+AGG | - | chr7.3:91288138-91288157 | MS.gene54430:intron | 40.0% | |
| TGGAACTTCATACTCCCAAT+CGG | + | chr7.3:91289362-91289381 | None:intergenic | 40.0% | |
| ! | AATGATCGATCGTAGCTTGT+TGG | - | chr7.3:91289590-91289609 | MS.gene54430:CDS | 40.0% |
| ! | ATGATATTGGTGGATGATGC+TGG | - | chr7.3:91288025-91288044 | MS.gene54430:CDS | 40.0% |
| ! | GAGTGGATTTGAAGCAGATA+AGG | - | chr7.3:91288842-91288861 | MS.gene54430:CDS | 40.0% |
| !! | ATGATCGATCGTAGCTTGTT+GGG | - | chr7.3:91289591-91289610 | MS.gene54430:CDS | 40.0% |
| !! | CAAAGTTGATGCGACTAGAA+AGG | - | chr7.3:91288356-91288375 | MS.gene54430:CDS | 40.0% |
| ACCGGAGACCAATATATGCA+CGG | - | chr7.3:91289628-91289647 | MS.gene54430:CDS | 45.0% | |
| CAGCACTCAATCATTCTCCA+TGG | - | chr7.3:91288059-91288078 | MS.gene54430:CDS | 45.0% | |
| CATGGAGAATGATTGAGTGC+TGG | + | chr7.3:91288061-91288080 | None:intergenic | 45.0% | |
| CGCGTTAGTGATTTGACGTT+TGG | - | chr7.3:91288820-91288839 | MS.gene54430:CDS | 45.0% | |
| GATCATTCCAACGACATTGC+AGG | + | chr7.3:91289577-91289596 | None:intergenic | 45.0% | |
| GCGCTTAAGCTTCTTGCATT+AGG | - | chr7.3:91288390-91288409 | MS.gene54430:intron | 45.0% | |
| GCTATAGCAGTGCAACATAC+CGG | - | chr7.3:91288691-91288710 | MS.gene54430:intron | 45.0% | |
| GGAACTTCATACTCCCAATC+GGG | + | chr7.3:91289361-91289380 | None:intergenic | 45.0% | |
| GTCGCATCAACTTTGCAAGA+TGG | + | chr7.3:91288351-91288370 | None:intergenic | 45.0% | |
| ! | AGTTGATGCGACTAGAAAGG+CGG | - | chr7.3:91288359-91288378 | MS.gene54430:CDS | 45.0% |
| ! | ATATTGGTGGATGATGCTGG+TGG | - | chr7.3:91288028-91288047 | MS.gene54430:CDS | 45.0% |
| ! | CGACTAGAAAGGCGGTTTTA+CGG | - | chr7.3:91288367-91288386 | MS.gene54430:intron | 45.0% |
| ! | GACTAGAAAGGCGGTTTTAC+GGG | - | chr7.3:91288368-91288387 | MS.gene54430:intron | 45.0% |
| !! | AAGGTTGATGGGAATACTGC+AGG | - | chr7.3:91288861-91288880 | MS.gene54430:intron | 45.0% |
| !! | GGTTCTGAAGAAGGTTCTGT+TGG | + | chr7.3:91289382-91289401 | None:intergenic | 45.0% |
| !! | TGCATTTTGTCGTTTGCAGG+AGG | - | chr7.3:91288787-91288806 | MS.gene54430:intron | 45.0% |
| ATGGGATGTACGTTCCCGAT+TGG | - | chr7.3:91289344-91289363 | MS.gene54430:intron | 50.0% | |
| ATTCCAACGACATTGCAGGC+TGG | + | chr7.3:91289573-91289592 | None:intergenic | 50.0% | |
| CCGGAGACCAATATATGCAC+GGG | - | chr7.3:91289629-91289648 | MS.gene54430:CDS | 50.0% | |
| CGGCGCTATAACGTGCATAT+CGG | - | chr7.3:91288594-91288613 | MS.gene54430:CDS | 50.0% | |
| TGGGATGTACGTTCCCGATT+GGG | - | chr7.3:91289345-91289364 | MS.gene54430:intron | 50.0% | |
| ! | CCCGTGCATATATTGGTCTC+CGG | + | chr7.3:91289632-91289651 | None:intergenic | 50.0% |
| ACAGGCGCCCGTGCATATAT+TGG | + | chr7.3:91289639-91289658 | None:intergenic | 55.0% | |
| TGTGGAGTAAGAGGCGACAC+TGG | - | chr7.3:91289546-91289565 | MS.gene54430:CDS | 55.0% | |
| GGACCAGCCTGCAATGTCGT+TGG | - | chr7.3:91289567-91289586 | MS.gene54430:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 91288016 | 91289662 | 91288016 | ID=MS.gene54430 |
| chr7.3 | mRNA | 91288016 | 91289662 | 91288016 | ID=MS.gene54430.t1;Parent=MS.gene54430 |
| chr7.3 | exon | 91289519 | 91289662 | 91289519 | ID=MS.gene54430.t1.exon1;Parent=MS.gene54430.t1 |
| chr7.3 | CDS | 91289519 | 91289662 | 91289519 | ID=cds.MS.gene54430.t1;Parent=MS.gene54430.t1 |
| chr7.3 | exon | 91289252 | 91289333 | 91289252 | ID=MS.gene54430.t1.exon2;Parent=MS.gene54430.t1 |
| chr7.3 | CDS | 91289252 | 91289333 | 91289252 | ID=cds.MS.gene54430.t1;Parent=MS.gene54430.t1 |
| chr7.3 | exon | 91288796 | 91288872 | 91288796 | ID=MS.gene54430.t1.exon3;Parent=MS.gene54430.t1 |
| chr7.3 | CDS | 91288796 | 91288872 | 91288796 | ID=cds.MS.gene54430.t1;Parent=MS.gene54430.t1 |
| chr7.3 | exon | 91288592 | 91288698 | 91288592 | ID=MS.gene54430.t1.exon4;Parent=MS.gene54430.t1 |
| chr7.3 | CDS | 91288592 | 91288698 | 91288592 | ID=cds.MS.gene54430.t1;Parent=MS.gene54430.t1 |
| chr7.3 | exon | 91288264 | 91288378 | 91288264 | ID=MS.gene54430.t1.exon5;Parent=MS.gene54430.t1 |
| chr7.3 | CDS | 91288264 | 91288378 | 91288264 | ID=cds.MS.gene54430.t1;Parent=MS.gene54430.t1 |
| chr7.3 | exon | 91288016 | 91288138 | 91288016 | ID=MS.gene54430.t1.exon6;Parent=MS.gene54430.t1 |
| chr7.3 | CDS | 91288016 | 91288138 | 91288016 | ID=cds.MS.gene54430.t1;Parent=MS.gene54430.t1 |
| Gene Sequence |
| Protein sequence |
