Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57166.t1 | XP_013452216.1 | 89.5 | 427 | 39 | 3 | 2 | 428 | 1 | 421 | 5.00E-226 | 793.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57166.t1 | A0A072U8X8 | 89.5 | 427 | 39 | 3 | 2 | 428 | 1 | 421 | 3.6e-226 | 793.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene57166 | 0.810534 | 1.10E-50 | -1.69E-46 |
| MS.gene049488 | MS.gene57166 | 0.818997 | 1.46E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene57166 | 0.803731 | 3.03E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene57166 | 0.813999 | 1.93E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene57166 | 0.811026 | 8.60E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene57166 | 0.811836 | 5.74E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene57166 | 0.804595 | 2.00E-49 | -1.69E-46 |
| MS.gene050971 | MS.gene57166 | 0.822276 | 2.58E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene57166 | 0.82267 | 2.09E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene57166 | 0.828695 | 7.79E-55 | -1.69E-46 |
| MS.gene052188 | MS.gene57166 | 0.833075 | 6.57E-56 | -1.69E-46 |
| MS.gene052253 | MS.gene57166 | 0.827242 | 1.74E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene57166 | 0.83157 | 1.55E-55 | -1.69E-46 |
| MS.gene05316 | MS.gene57166 | 0.826708 | 2.34E-54 | -1.69E-46 |
| MS.gene053758 | MS.gene57166 | 0.81112 | 8.21E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene57166 | 0.83689 | 7.18E-57 | -1.69E-46 |
| MS.gene053912 | MS.gene57166 | 0.808056 | 3.74E-50 | -1.69E-46 |
| MS.gene054011 | MS.gene57166 | 0.804466 | 2.13E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene57166 | 0.811202 | 7.88E-51 | -1.69E-46 |
| MS.gene054473 | MS.gene57166 | 0.802937 | 4.43E-49 | -1.69E-46 |
| MS.gene054918 | MS.gene57166 | 0.803398 | 3.55E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene57166 | 0.824204 | 9.16E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene57166 | 0.832371 | 9.82E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene57166 | 0.827884 | 1.22E-54 | -1.69E-46 |
| MS.gene05553 | MS.gene57166 | 0.800402 | 1.47E-48 | -1.69E-46 |
| MS.gene055604 | MS.gene57166 | 0.809056 | 2.28E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene57166 | 0.808614 | 2.84E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene57166 | 0.811469 | 6.89E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene57166 | 0.811837 | 5.73E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene57166 | -0.815362 | 9.61E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene57166 | 0.850685 | 1.45E-60 | -1.69E-46 |
| MS.gene057448 | MS.gene57166 | 0.808742 | 2.67E-50 | -1.69E-46 |
| MS.gene057449 | MS.gene57166 | 0.817445 | 3.29E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene57166 | 0.814024 | 1.90E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene57166 | 0.81756 | 3.10E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene57166 | 0.8104 | 1.17E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene57166 | 0.802081 | 6.64E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene57166 | 0.85127 | 9.90E-61 | -1.69E-46 |
| MS.gene058928 | MS.gene57166 | 0.836338 | 9.92E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene57166 | 0.820236 | 7.63E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene57166 | 0.842011 | 3.36E-58 | -1.69E-46 |
| MS.gene059294 | MS.gene57166 | 0.80795 | 3.94E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene57166 | 0.826568 | 2.53E-54 | -1.69E-46 |
| MS.gene059597 | MS.gene57166 | 0.821641 | 3.63E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene57166 | 0.806224 | 9.13E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene57166 | 0.803901 | 2.79E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene57166 | 0.801896 | 7.25E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene57166 | 0.806843 | 6.76E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene57166 | 0.819719 | 1.00E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene57166 | 0.812247 | 4.67E-51 | -1.69E-46 |
| MS.gene060495 | MS.gene57166 | 0.811235 | 7.75E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene57166 | 0.856131 | 3.96E-62 | -1.69E-46 |
| MS.gene061051 | MS.gene57166 | -0.802524 | 5.39E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene57166 | 0.835482 | 1.64E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57166.t1 | MTR_6g048350 | 87.731 | 432 | 52 | 1 | 1 | 432 | 1 | 431 | 0.0 | 791 |
| MS.gene57166.t1 | MTR_6g048310 | 89.461 | 427 | 39 | 3 | 2 | 428 | 1 | 421 | 0.0 | 764 |
| MS.gene57166.t1 | MTR_4g094548 | 83.333 | 438 | 70 | 3 | 1 | 436 | 1 | 437 | 0.0 | 762 |
| MS.gene57166.t1 | MTR_4g094555 | 80.505 | 436 | 84 | 1 | 1 | 436 | 1 | 435 | 0.0 | 739 |
| MS.gene57166.t1 | MTR_4g094570 | 79.535 | 430 | 87 | 1 | 1 | 430 | 1 | 429 | 0.0 | 730 |
| MS.gene57166.t1 | MTR_4g094560 | 79.587 | 436 | 78 | 2 | 1 | 436 | 1 | 425 | 0.0 | 716 |
| MS.gene57166.t1 | MTR_4g094550 | 79.302 | 430 | 87 | 2 | 1 | 429 | 1 | 429 | 0.0 | 716 |
| MS.gene57166.t1 | MTR_4g094562 | 78.738 | 428 | 82 | 1 | 1 | 428 | 1 | 419 | 0.0 | 709 |
| MS.gene57166.t1 | MTR_2g030470 | 62.273 | 440 | 152 | 6 | 3 | 436 | 6 | 437 | 0.0 | 566 |
| MS.gene57166.t1 | MTR_2g030470 | 61.687 | 415 | 148 | 4 | 1 | 412 | 416 | 822 | 0.0 | 548 |
| MS.gene57166.t1 | MTR_1g052640 | 61.575 | 419 | 149 | 4 | 1 | 415 | 1 | 411 | 0.0 | 555 |
| MS.gene57166.t1 | MTR_2g030460 | 60.000 | 420 | 156 | 4 | 1 | 416 | 1 | 412 | 0.0 | 549 |
| MS.gene57166.t1 | MTR_0083s0100 | 64.010 | 389 | 131 | 2 | 28 | 415 | 31 | 411 | 0.0 | 540 |
| MS.gene57166.t1 | MTR_2g030480 | 59.135 | 416 | 139 | 5 | 1 | 413 | 1 | 388 | 5.99e-180 | 508 |
| MS.gene57166.t1 | MTR_4g094565 | 59.674 | 429 | 91 | 5 | 1 | 429 | 1 | 347 | 2.27e-169 | 479 |
| MS.gene57166.t1 | MTR_4g094562 | 75.874 | 286 | 69 | 0 | 1 | 286 | 1 | 286 | 4.81e-167 | 472 |
| MS.gene57166.t1 | MTR_2g030460 | 58.187 | 342 | 131 | 4 | 1 | 338 | 1 | 334 | 2.64e-154 | 440 |
| MS.gene57166.t1 | MTR_1g052640 | 59.357 | 342 | 127 | 4 | 1 | 338 | 1 | 334 | 6.30e-152 | 434 |
| MS.gene57166.t1 | MTR_4g094565 | 70.629 | 286 | 56 | 1 | 1 | 286 | 1 | 258 | 5.12e-145 | 416 |
| MS.gene57166.t1 | MTR_8g039300 | 45.107 | 419 | 210 | 6 | 1 | 412 | 1 | 406 | 2.01e-136 | 397 |
| MS.gene57166.t1 | MTR_6g089930 | 43.468 | 421 | 218 | 6 | 1 | 414 | 1 | 408 | 1.75e-134 | 393 |
| MS.gene57166.t1 | MTR_6g090090 | 45.476 | 420 | 199 | 7 | 1 | 413 | 27 | 423 | 4.08e-134 | 392 |
| MS.gene57166.t1 | MTR_3g035040 | 43.943 | 421 | 216 | 7 | 1 | 414 | 1 | 408 | 2.47e-129 | 380 |
| MS.gene57166.t1 | MTR_1g052640 | 58.763 | 291 | 108 | 4 | 1 | 287 | 1 | 283 | 1.01e-125 | 366 |
| MS.gene57166.t1 | MTR_1g035220 | 43.112 | 392 | 181 | 7 | 1 | 384 | 1 | 358 | 1.29e-114 | 340 |
| MS.gene57166.t1 | MTR_1g062750 | 45.188 | 239 | 116 | 5 | 58 | 287 | 2 | 234 | 3.40e-74 | 232 |
| MS.gene57166.t1 | MTR_3g010150 | 58.537 | 41 | 17 | 0 | 125 | 165 | 14 | 54 | 7.86e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57166.t1 | AT5G61820 | 56.770 | 421 | 159 | 7 | 6 | 412 | 8 | 419 | 2.27e-169 | 484 |
| MS.gene57166.t1 | AT5G61820 | 56.770 | 421 | 159 | 7 | 6 | 412 | 8 | 419 | 2.27e-169 | 484 |
Find 88 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTCCTTGCTCAAATTT+TGG | 0.068639 | 6.3:+43414462 | None:intergenic |
| CCTTTATAATCTGGCCTTAA+AGG | 0.090484 | 6.3:+43413961 | None:intergenic |
| TTGATTGCTACATGACCTTT+TGG | 0.281023 | 6.3:+43414402 | None:intergenic |
| ATAAATACGGAAGGCCTTTA+AGG | 0.292905 | 6.3:-43413975 | MS.gene57166:CDS |
| ACCGATATTCCGGATCCTTT+TGG | 0.306453 | 6.3:-43414141 | MS.gene57166:CDS |
| CACTTCTCCTCAAACCCTTC+TGG | 0.309846 | 6.3:+43414090 | None:intergenic |
| CTTCCACAGTATTTCGGCCT+TGG | 0.317956 | 6.3:-43414186 | MS.gene57166:CDS |
| GATATTCTTCCACAGTATTT+CGG | 0.321443 | 6.3:-43414192 | MS.gene57166:CDS |
| CATCAACATTCAGGTGGAAT+TGG | 0.323134 | 6.3:-43413237 | MS.gene57166:CDS |
| GGAATTGGATCAACTCTATA+TGG | 0.325668 | 6.3:-43413222 | MS.gene57166:CDS |
| ATTCCAATCAATCCATTTCA+TGG | 0.333997 | 6.3:+43413852 | None:intergenic |
| CATTACTCCAGCGTGCTCTT+TGG | 0.337450 | 6.3:+43412377 | None:intergenic |
| AGGAACACCGACCGATATTC+CGG | 0.343821 | 6.3:-43414151 | MS.gene57166:CDS |
| GCTGTTGCTCATCAACATTC+AGG | 0.362382 | 6.3:-43413246 | MS.gene57166:CDS |
| TGTTCTTCTGTACCAAGTTA+TGG | 0.376638 | 6.3:-43412525 | MS.gene57166:CDS |
| TCAATTATGTATGCCTTAAC+AGG | 0.376750 | 6.3:+43413817 | None:intergenic |
| ACGAAACATATATCCATCAT+TGG | 0.376901 | 6.3:-43414329 | MS.gene57166:CDS |
| ACACCATGAAATGGATTGAT+TGG | 0.377970 | 6.3:-43413855 | MS.gene57166:CDS |
| ATCTTGACAGAACCTGGTTT+AGG | 0.385522 | 6.3:+43412444 | None:intergenic |
| TCTGTACCAAGTTATGGAAA+TGG | 0.387198 | 6.3:-43412519 | MS.gene57166:CDS |
| CGTGGCGTAGAGGATAAGTT+AGG | 0.399286 | 6.3:-43414039 | MS.gene57166:CDS |
| AAAGAGCACGCTGGAGTAAT+GGG | 0.401347 | 6.3:-43412375 | MS.gene57166:CDS |
| AACAAACCTCCTTTATAATC+TGG | 0.406826 | 6.3:+43413952 | None:intergenic |
| TTTAGGTAGAGACTTCTCTT+TGG | 0.407405 | 6.3:+43413880 | None:intergenic |
| ACCAAAAGGATCCGGAATAT+CGG | 0.410505 | 6.3:+43414140 | None:intergenic |
| CCTTTAAGGCCAGATTATAA+AGG | 0.413541 | 6.3:-43413961 | MS.gene57166:CDS |
| ACCTAAAATACACCATGAAA+TGG | 0.414273 | 6.3:-43413864 | MS.gene57166:CDS |
| CCAAAATTTGAGCAAGGACC+TGG | 0.415583 | 6.3:-43414462 | MS.gene57166:CDS |
| CAAAGAGCACGCTGGAGTAA+TGG | 0.415640 | 6.3:-43412376 | MS.gene57166:CDS |
| AACCCTTCTGGAATTTCTGC+AGG | 0.415755 | 6.3:+43414102 | None:intergenic |
| TCATTTCCATTTCCATAACT+TGG | 0.428866 | 6.3:+43412513 | None:intergenic |
| AATTTATTTATAACTGATCC+AGG | 0.440987 | 6.3:+43414444 | None:intergenic |
| AAACTATCAAATGATTCAAA+AGG | 0.443829 | 6.3:-43413778 | MS.gene57166:CDS |
| GAACTTAGATCATGATTGTA+AGG | 0.453756 | 6.3:-43413752 | MS.gene57166:intron |
| ATCTCTATACCAAAAGGATC+CGG | 0.470682 | 6.3:+43414132 | None:intergenic |
| ACAAGTCTCCCACTACAAAC+TGG | 0.475191 | 6.3:-43413285 | MS.gene57166:CDS |
| AATGAGGCAGGGTACATTGT+AGG | 0.477299 | 6.3:-43412483 | MS.gene57166:CDS |
| GGAGTTGTTCTGCCACCAAT+AGG | 0.477987 | 6.3:+43412343 | None:intergenic |
| GTCTCAATTGTTGTTGGTAT+GGG | 0.482130 | 6.3:+43412322 | None:intergenic |
| TGTCTCAATTGTTGTTGGTA+TGG | 0.484776 | 6.3:+43412321 | None:intergenic |
| TATGGAAATGGAAATGAAGC+AGG | 0.486895 | 6.3:-43412507 | MS.gene57166:CDS |
| AATGTAACAGTGGATAAATA+CGG | 0.491702 | 6.3:-43413988 | MS.gene57166:CDS |
| TAGAATGTCTCAATTGTTGT+TGG | 0.491837 | 6.3:+43412316 | None:intergenic |
| TCATTTATCTTGACAGAACC+TGG | 0.494580 | 6.3:+43412438 | None:intergenic |
| AGAAATTCCAGAAGGGTTTG+AGG | 0.495743 | 6.3:-43414097 | MS.gene57166:CDS |
| TGATACACAATGCAAGTTGA+AGG | 0.497442 | 6.3:-43413917 | MS.gene57166:CDS |
| CGAAACATATATCCATCATT+GGG | 0.499371 | 6.3:-43414328 | MS.gene57166:CDS |
| CAGAAGGGTTTGAGGAGAAG+TGG | 0.504990 | 6.3:-43414089 | MS.gene57166:CDS |
| TTCTCAAAAGAACTTGAGAA+TGG | 0.516351 | 6.3:+43414522 | None:intergenic |
| ACTCTAATTATGTTCTCGTA+AGG | 0.520161 | 6.3:-43414236 | MS.gene57166:CDS |
| TTACCTATCTCTATACCAAA+AGG | 0.520347 | 6.3:+43414126 | None:intergenic |
| GCTGAAGTTGTTGATGAAGC+TGG | 0.521968 | 6.3:-43414369 | MS.gene57166:CDS |
| AATGAAGCAGGAAATGAGGC+AGG | 0.526123 | 6.3:-43412495 | MS.gene57166:CDS |
| CACAATCATTTCCCTCATCA+TGG | 0.527001 | 6.3:+43413322 | None:intergenic |
| ACTGTGGAAGAATATCTGCC+TGG | 0.527321 | 6.3:+43414199 | None:intergenic |
| ATCTTGCAACAACCCAATGA+TGG | 0.528507 | 6.3:+43414316 | None:intergenic |
| TGGATCAACTCTATATGGAC+AGG | 0.542632 | 6.3:-43413217 | MS.gene57166:intron |
| AGTGAAAGTACAAAATCTCT+AGG | 0.543268 | 6.3:+43414573 | None:intergenic |
| TTCCTCGTGTTTCAGATCCA+AGG | 0.550449 | 6.3:+43414169 | None:intergenic |
| AAGGAACGATGGCATATGCC+AGG | 0.552471 | 6.3:-43414217 | MS.gene57166:CDS |
| TGGATATATGTTTCGTGCAA+CGG | 0.553733 | 6.3:+43414336 | None:intergenic |
| GGTTCTGTCAAGATAAATGA+TGG | 0.568462 | 6.3:-43412435 | MS.gene57166:CDS |
| TGGAAATGAAGCAGGAAATG+AGG | 0.569506 | 6.3:-43412499 | MS.gene57166:CDS |
| TGGTCCCCAAAATTTGAGCA+AGG | 0.583158 | 6.3:-43414468 | MS.gene57166:CDS |
| ACACAATGCAAGTTGAAGGA+AGG | 0.583684 | 6.3:-43413913 | MS.gene57166:CDS |
| TTAAGGCCAGATTATAAAGG+AGG | 0.583925 | 6.3:-43413958 | MS.gene57166:CDS |
| ATACAGAAAATGATAGCCAT+AGG | 0.585568 | 6.3:-43414269 | MS.gene57166:CDS |
| TATCGATACGCGTGGCGTAG+AGG | 0.604872 | 6.3:-43414049 | MS.gene57166:CDS |
| GTGGCGTAGAGGATAAGTTA+GGG | 0.607027 | 6.3:-43414038 | MS.gene57166:CDS |
| TCTACTTGTTATCCTAAACC+AGG | 0.611987 | 6.3:-43412456 | MS.gene57166:CDS |
| CATAACCACCAGTTTGTAGT+GGG | 0.617808 | 6.3:+43413277 | None:intergenic |
| ACATAACCACCAGTTTGTAG+TGG | 0.621224 | 6.3:+43413276 | None:intergenic |
| ATGATTGTGTTCATGTGAAG+AGG | 0.628744 | 6.3:-43413308 | MS.gene57166:CDS |
| TATGTTCTCGTAAGGAACGA+TGG | 0.639808 | 6.3:-43414228 | MS.gene57166:CDS |
| AACAACACCAAAGAGCACGC+TGG | 0.641398 | 6.3:-43412384 | MS.gene57166:CDS |
| TTGTAGCACAGACCATGATG+AGG | 0.644465 | 6.3:-43413334 | MS.gene57166:CDS |
| TAACAGTGGATAAATACGGA+AGG | 0.645572 | 6.3:-43413984 | MS.gene57166:CDS |
| TGTAGCACAGACCATGATGA+GGG | 0.648137 | 6.3:-43413333 | MS.gene57166:CDS |
| AATCCTGCAGAAATTCCAGA+AGG | 0.652001 | 6.3:-43414105 | MS.gene57166:CDS |
| GTTGCTCATCAACATTCAGG+TGG | 0.652296 | 6.3:-43413243 | MS.gene57166:CDS |
| GATCCAAGGCCGAAATACTG+TGG | 0.655744 | 6.3:+43414183 | None:intergenic |
| GGCCTTGGATCTGAAACACG+AGG | 0.667596 | 6.3:-43414171 | MS.gene57166:CDS |
| TGAGCTTTATAATGTAACAG+TGG | 0.676658 | 6.3:-43413998 | MS.gene57166:CDS |
| AAAGGATCCGGAATATCGGT+CGG | 0.677904 | 6.3:+43414144 | None:intergenic |
| ATCCTGCAGAAATTCCAGAA+GGG | 0.682882 | 6.3:-43414104 | MS.gene57166:CDS |
| ATTCATGCTATCGATACGCG+TGG | 0.690800 | 6.3:-43414057 | MS.gene57166:CDS |
| ATGAAGCAGGAAATGAGGCA+GGG | 0.694137 | 6.3:-43412494 | MS.gene57166:CDS |
| AGTCTCCCACTACAAACTGG+TGG | 0.704944 | 6.3:-43413282 | MS.gene57166:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTAATTAACAAGAAAA+TGG | - | chr6.3:43413942-43413961 | MS.gene57166:CDS | 15.0% |
| !! | AAACTATCAAATGATTCAAA+AGG | - | chr6.3:43413073-43413092 | MS.gene57166:intron | 20.0% |
| !! | AATTTATTTATAACTGATCC+AGG | + | chr6.3:43412410-43412429 | None:intergenic | 20.0% |
| !! | AATTTGCAATAGTTACATAT+AGG | - | chr6.3:43413658-43413677 | MS.gene57166:intron | 20.0% |
| !! | ATTAAAACATTTATTACCCT+CGG | + | chr6.3:43413931-43413950 | None:intergenic | 20.0% |
| !!! | AAATAAAATCAGCAGTTTTT+TGG | - | chr6.3:43412363-43412382 | MS.gene57166:CDS | 20.0% |
| !!! | TATGATATTGATTTTCCAAA+AGG | - | chr6.3:43412434-43412453 | MS.gene57166:CDS | 20.0% |
| !!! | TTTGTTTAAAACTGTAATCA+TGG | - | chr6.3:43413705-43413724 | MS.gene57166:intron | 20.0% |
| ! | AATGTAACAGTGGATAAATA+CGG | - | chr6.3:43412863-43412882 | MS.gene57166:intron | 25.0% |
| ! | CATTAGACCAATAGTAAATA+AGG | - | chr6.3:43414115-43414134 | MS.gene57166:CDS | 25.0% |
| ! | TAAATCCAAAATATCGAGTT+TGG | - | chr6.3:43413264-43413283 | MS.gene57166:CDS | 25.0% |
| ! | TTAAAACTGTAATCATGGAA+GGG | - | chr6.3:43413710-43413729 | MS.gene57166:intron | 25.0% |
| !! | AAAATCATGATTTTGTGCTA+GGG | - | chr6.3:43413850-43413869 | MS.gene57166:CDS | 25.0% |
| !! | GATTGATTGGAATGATTTTA+TGG | - | chr6.3:43413009-43413028 | MS.gene57166:intron | 25.0% |
| !! | TGTGAATTATGTATGTTTTC+AGG | - | chr6.3:43414289-43414308 | MS.gene57166:CDS | 25.0% |
| !! | TTAATCCAAACTCGATATTT+TGG | + | chr6.3:43413272-43413291 | None:intergenic | 25.0% |
| !! | TTTAAAACTGTAATCATGGA+AGG | - | chr6.3:43413709-43413728 | MS.gene57166:intron | 25.0% |
| !!! | AAACTAGCCTTATTTACTAT+TGG | + | chr6.3:43414125-43414144 | None:intergenic | 25.0% |
| !!! | AATTATGTATGTTTTCAGGA+TGG | - | chr6.3:43414293-43414312 | MS.gene57166:CDS | 25.0% |
| !!! | ATTATGTATGTTTTCAGGAT+GGG | - | chr6.3:43414294-43414313 | MS.gene57166:CDS | 25.0% |
| !!! | TTTAAAATGAGTGTCGTTTA+AGG | + | chr6.3:43414204-43414223 | None:intergenic | 25.0% |
| AACAAACCTCCTTTATAATC+TGG | + | chr6.3:43412902-43412921 | None:intergenic | 30.0% | |
| ACCTAAAATACACCATGAAA+TGG | - | chr6.3:43412987-43413006 | MS.gene57166:intron | 30.0% | |
| ACGAAACATATATCCATCAT+TGG | - | chr6.3:43412522-43412541 | MS.gene57166:CDS | 30.0% | |
| ACTCTAATTATGTTCTCGTA+AGG | - | chr6.3:43412615-43412634 | MS.gene57166:intron | 30.0% | |
| AGTGATTGTTGGATCAAAAT+CGG | - | chr6.3:43413207-43413226 | MS.gene57166:intron | 30.0% | |
| ATACAGAAAATGATAGCCAT+AGG | - | chr6.3:43412582-43412601 | MS.gene57166:intron | 30.0% | |
| ATCATTTGAACTTGATCCAA+CGG | - | chr6.3:43413355-43413374 | MS.gene57166:CDS | 30.0% | |
| ATTCCAATCAATCCATTTCA+TGG | + | chr6.3:43413002-43413021 | None:intergenic | 30.0% | |
| CGAAACATATATCCATCATT+GGG | - | chr6.3:43412523-43412542 | MS.gene57166:CDS | 30.0% | |
| GAACTTAGATCATGATTGTA+AGG | - | chr6.3:43413099-43413118 | MS.gene57166:intron | 30.0% | |
| GATATTCTTCCACAGTATTT+CGG | - | chr6.3:43412659-43412678 | MS.gene57166:intron | 30.0% | |
| TAAATCCAAAATACCGAGTT+TGG | + | chr6.3:43413330-43413349 | None:intergenic | 30.0% | |
| TAGAAGCTAATATCTTGAGT+CGG | + | chr6.3:43413798-43413817 | None:intergenic | 30.0% | |
| TAGAATGTCTCAATTGTTGT+TGG | + | chr6.3:43414538-43414557 | None:intergenic | 30.0% | |
| TCAATTATGTATGCCTTAAC+AGG | + | chr6.3:43413037-43413056 | None:intergenic | 30.0% | |
| TCATTTCCATTTCCATAACT+TGG | + | chr6.3:43414341-43414360 | None:intergenic | 30.0% | |
| TTACCTATCTCTATACCAAA+AGG | + | chr6.3:43412728-43412747 | None:intergenic | 30.0% | |
| TTCATCAAGAATCATGTTGT+TGG | - | chr6.3:43413130-43413149 | MS.gene57166:intron | 30.0% | |
| TTCTCAAAAGAACTTGAGAA+TGG | + | chr6.3:43412332-43412351 | None:intergenic | 30.0% | |
| ! | AAATACCGAGTTTGGAATTT+AGG | + | chr6.3:43413322-43413341 | None:intergenic | 30.0% |
| ! | AAATTCCAAACTCGGTATTT+TGG | - | chr6.3:43413322-43413341 | MS.gene57166:CDS | 30.0% |
| ! | AATTAATTGGAGGGTACAAT+TGG | + | chr6.3:43414071-43414090 | None:intergenic | 30.0% |
| ! | AGTGAAAGTACAAAATCTCT+AGG | + | chr6.3:43412281-43412300 | None:intergenic | 30.0% |
| ! | CAAAATCATGATTTTGTGCT+AGG | - | chr6.3:43413849-43413868 | MS.gene57166:CDS | 30.0% |
| ! | CTAGCACAAAATCATGATTT+TGG | + | chr6.3:43413851-43413870 | None:intergenic | 30.0% |
| ! | TCCATTTCATGGTGTATTTT+AGG | + | chr6.3:43412991-43413010 | None:intergenic | 30.0% |
| ! | TGAGCTTTATAATGTAACAG+TGG | - | chr6.3:43412853-43412872 | MS.gene57166:intron | 30.0% |
| !! | ATCATGATTTTGGTCTGAAT+TGG | + | chr6.3:43413841-43413860 | None:intergenic | 30.0% |
| !! | CTAATGCTTTGAAGAAAGTA+GGG | + | chr6.3:43414101-43414120 | None:intergenic | 30.0% |
| !! | CTCGGTATTTTGGATTTAAA+AGG | - | chr6.3:43413332-43413351 | MS.gene57166:CDS | 30.0% |
| !! | TCATGATTTTGGTCTGAATT+GGG | + | chr6.3:43413840-43413859 | None:intergenic | 30.0% |
| !! | TCTAATGCTTTGAAGAAAGT+AGG | + | chr6.3:43414102-43414121 | None:intergenic | 30.0% |
| !!! | TACTCGTTCTTCGTTTTTTA+TGG | - | chr6.3:43414556-43414575 | MS.gene57166:CDS | 30.0% |
| !!! | TTTTGTTTTTTTTCAGCCGA+GGG | - | chr6.3:43413912-43413931 | MS.gene57166:CDS | 30.0% |
| ACACCAGTTCATTTCTTTGT+TGG | - | chr6.3:43413438-43413457 | MS.gene57166:intron | 35.0% | |
| ACGATCCTAAATTCCAAACT+CGG | - | chr6.3:43413314-43413333 | MS.gene57166:CDS | 35.0% | |
| AGAAGCTAATATCTTGAGTC+GGG | + | chr6.3:43413797-43413816 | None:intergenic | 35.0% | |
| ATAAATACGGAAGGCCTTTA+AGG | - | chr6.3:43412876-43412895 | MS.gene57166:intron | 35.0% | |
| ATCAAGAATCATGTTGTTGG+TGG | - | chr6.3:43413133-43413152 | MS.gene57166:intron | 35.0% | |
| ATCTCTATACCAAAAGGATC+CGG | + | chr6.3:43412722-43412741 | None:intergenic | 35.0% | |
| ATGATTGTGTTCATGTGAAG+AGG | - | chr6.3:43413543-43413562 | MS.gene57166:intron | 35.0% | |
| CACCAGTTCATTTCTTTGTT+GGG | - | chr6.3:43413439-43413458 | MS.gene57166:intron | 35.0% | |
| CTCGGCTGAAAAAAAACAAA+AGG | + | chr6.3:43413913-43413932 | None:intergenic | 35.0% | |
| GGAATTGGATCAACTCTATA+TGG | - | chr6.3:43413629-43413648 | MS.gene57166:intron | 35.0% | |
| GGTACACTCAATTAATTGGA+GGG | + | chr6.3:43414080-43414099 | None:intergenic | 35.0% | |
| GGTTCTGTCAAGATAAATGA+TGG | - | chr6.3:43414416-43414435 | MS.gene57166:CDS | 35.0% | |
| GTAGGGTACACTCAATTAAT+TGG | + | chr6.3:43414084-43414103 | None:intergenic | 35.0% | |
| TAACAGTGGATAAATACGGA+AGG | - | chr6.3:43412867-43412886 | MS.gene57166:intron | 35.0% | |
| TACCCAACAAAGAAATGAAC+TGG | + | chr6.3:43413444-43413463 | None:intergenic | 35.0% | |
| TATGGAAATGGAAATGAAGC+AGG | - | chr6.3:43414344-43414363 | MS.gene57166:CDS | 35.0% | |
| TCATTTATCTTGACAGAACC+TGG | + | chr6.3:43414416-43414435 | None:intergenic | 35.0% | |
| TCTGTACCAAGTTATGGAAA+TGG | - | chr6.3:43414332-43414351 | MS.gene57166:CDS | 35.0% | |
| TGGATATATGTTTCGTGCAA+CGG | + | chr6.3:43412518-43412537 | None:intergenic | 35.0% | |
| TGTTCTTCTGTACCAAGTTA+TGG | - | chr6.3:43414326-43414345 | MS.gene57166:CDS | 35.0% | |
| TTAAGGCCAGATTATAAAGG+AGG | - | chr6.3:43412893-43412912 | MS.gene57166:intron | 35.0% | |
| TTTAGGTAGAGACTTCTCTT+TGG | + | chr6.3:43412974-43412993 | None:intergenic | 35.0% | |
| ! | AATCATGTTGTTGGTGGAAA+TGG | - | chr6.3:43413139-43413158 | MS.gene57166:intron | 35.0% |
| ! | AATGGGACTTTTCTACCTAT+TGG | - | chr6.3:43414493-43414512 | MS.gene57166:CDS | 35.0% |
| ! | ACGACACTCATTTTAAACAG+AGG | - | chr6.3:43414207-43414226 | MS.gene57166:CDS | 35.0% |
| ! | CGACACTCATTTTAAACAGA+GGG | - | chr6.3:43414208-43414227 | MS.gene57166:CDS | 35.0% |
| ! | GAGAGTTTTACCAATCATTG+TGG | - | chr6.3:43413766-43413785 | MS.gene57166:CDS | 35.0% |
| ! | GATCCTTTTGGTATAGAGAT+AGG | - | chr6.3:43412722-43412741 | MS.gene57166:intron | 35.0% |
| ! | GTCTCAATTGTTGTTGGTAT+GGG | + | chr6.3:43414532-43414551 | None:intergenic | 35.0% |
| ! | TGATACACAATGCAAGTTGA+AGG | - | chr6.3:43412934-43412953 | MS.gene57166:intron | 35.0% |
| ! | TGATTTTATGGTGCCTGTTA+AGG | - | chr6.3:43413021-43413040 | MS.gene57166:intron | 35.0% |
| ! | TGTCTCAATTGTTGTTGGTA+TGG | + | chr6.3:43414533-43414552 | None:intergenic | 35.0% |
| ! | TTGATTGCTACATGACCTTT+TGG | + | chr6.3:43412452-43412471 | None:intergenic | 35.0% |
| !! | AAGTTGAAGGAAGGTTTTGA+GGG | - | chr6.3:43412947-43412966 | MS.gene57166:intron | 35.0% |
| !! | ACACCATGAAATGGATTGAT+TGG | - | chr6.3:43412996-43413015 | MS.gene57166:intron | 35.0% |
| !! | CCTTTAAGGCCAGATTATAA+AGG | - | chr6.3:43412890-43412909 | MS.gene57166:intron | 35.0% |
| !! | CCTTTATAATCTGGCCTTAA+AGG | + | chr6.3:43412893-43412912 | None:intergenic | 35.0% |
| !! | TCTACTTGTTATCCTAAACC+AGG | - | chr6.3:43414395-43414414 | MS.gene57166:CDS | 35.0% |
| !!! | CTTTTGTTTTTTTTCAGCCG+AGG | - | chr6.3:43413911-43413930 | MS.gene57166:CDS | 35.0% |
| !!! | TAGAGTTTTGAAGCATCCTA+TGG | + | chr6.3:43412601-43412620 | None:intergenic | 35.0% |
| AATCCTGCAGAAATTCCAGA+AGG | - | chr6.3:43412746-43412765 | MS.gene57166:intron | 40.0% | |
| ACATAACCACCAGTTTGTAG+TGG | + | chr6.3:43413578-43413597 | None:intergenic | 40.0% | |
| ACCAAAAGGATCCGGAATAT+CGG | + | chr6.3:43412714-43412733 | None:intergenic | 40.0% | |
| AGAAATTCCAGAAGGGTTTG+AGG | - | chr6.3:43412754-43412773 | MS.gene57166:intron | 40.0% | |
| AGTTTGGATTAAGTGACCGT+TGG | - | chr6.3:43413280-43413299 | MS.gene57166:CDS | 40.0% | |
| ATCCTGCAGAAATTCCAGAA+GGG | - | chr6.3:43412747-43412766 | MS.gene57166:intron | 40.0% | |
| ATCGACATATCAATGACCGT+TGG | + | chr6.3:43413374-43413393 | None:intergenic | 40.0% | |
| ATCGTCTGAACTTGATCCAA+CGG | + | chr6.3:43413299-43413318 | None:intergenic | 40.0% | |
| ATCTTGACAGAACCTGGTTT+AGG | + | chr6.3:43414410-43414429 | None:intergenic | 40.0% | |
| ATCTTGCAACAACCCAATGA+TGG | + | chr6.3:43412538-43412557 | None:intergenic | 40.0% | |
| CACAATCATTTCCCTCATCA+TGG | + | chr6.3:43413532-43413551 | None:intergenic | 40.0% | |
| CATAACCACCAGTTTGTAGT+GGG | + | chr6.3:43413577-43413596 | None:intergenic | 40.0% | |
| CATCAACATTCAGGTGGAAT+TGG | - | chr6.3:43413614-43413633 | MS.gene57166:intron | 40.0% | |
| GGGTACACTCAATTAATTGG+AGG | + | chr6.3:43414081-43414100 | None:intergenic | 40.0% | |
| GTGAATGGATCAGTGATTGT+TGG | - | chr6.3:43413196-43413215 | MS.gene57166:intron | 40.0% | |
| TATGTTCTCGTAAGGAACGA+TGG | - | chr6.3:43412623-43412642 | MS.gene57166:intron | 40.0% | |
| TGGAAATGAAGCAGGAAATG+AGG | - | chr6.3:43414352-43414371 | MS.gene57166:CDS | 40.0% | |
| TGGATCAACTCTATATGGAC+AGG | - | chr6.3:43413634-43413653 | MS.gene57166:intron | 40.0% | |
| TTTGTGCTAGGGTTCAAACT+TGG | - | chr6.3:43413861-43413880 | MS.gene57166:CDS | 40.0% | |
| ! | ACACAATGCAAGTTGAAGGA+AGG | - | chr6.3:43412938-43412957 | MS.gene57166:intron | 40.0% |
| ! | AGGTCCTTGCTCAAATTTTG+GGG | + | chr6.3:43412390-43412409 | None:intergenic | 40.0% |
| ! | CAGGTCCTTGCTCAAATTTT+GGG | + | chr6.3:43412391-43412410 | None:intergenic | 40.0% |
| ! | GAAATGGATTCCGTGTAGTT+GGG | - | chr6.3:43413155-43413174 | MS.gene57166:intron | 40.0% |
| !! | CAAGTTGAAGGAAGGTTTTG+AGG | - | chr6.3:43412946-43412965 | MS.gene57166:intron | 40.0% |
| AAAGGATCCGGAATATCGGT+CGG | + | chr6.3:43412710-43412729 | None:intergenic | 45.0% | |
| AATGAAGCAGGAAATGAGGC+AGG | - | chr6.3:43414356-43414375 | MS.gene57166:CDS | 45.0% | |
| AATGAGGCAGGGTACATTGT+AGG | - | chr6.3:43414368-43414387 | MS.gene57166:CDS | 45.0% | |
| ACAAGTCTCCCACTACAAAC+TGG | - | chr6.3:43413566-43413585 | MS.gene57166:intron | 45.0% | |
| ACTGTGGAAGAATATCTGCC+TGG | + | chr6.3:43412655-43412674 | None:intergenic | 45.0% | |
| AGCTAATATCTTGAGTCGGG+TGG | + | chr6.3:43413794-43413813 | None:intergenic | 45.0% | |
| ATGAAGCAGGAAATGAGGCA+GGG | - | chr6.3:43414357-43414376 | MS.gene57166:CDS | 45.0% | |
| ATTCATGCTATCGATACGCG+TGG | - | chr6.3:43412794-43412813 | MS.gene57166:intron | 45.0% | |
| CCAAAATTTGAGCAAGGACC+TGG | - | chr6.3:43412389-43412408 | MS.gene57166:CDS | 45.0% | |
| GCTGTTGCTCATCAACATTC+AGG | - | chr6.3:43413605-43413624 | MS.gene57166:intron | 45.0% | |
| GTGGCGTAGAGGATAAGTTA+GGG | - | chr6.3:43412813-43412832 | MS.gene57166:intron | 45.0% | |
| GTTGCTCATCAACATTCAGG+TGG | - | chr6.3:43413608-43413627 | MS.gene57166:intron | 45.0% | |
| TGGTCCCCAAAATTTGAGCA+AGG | - | chr6.3:43412383-43412402 | MS.gene57166:CDS | 45.0% | |
| TGTAGCACAGACCATGATGA+GGG | - | chr6.3:43413518-43413537 | MS.gene57166:intron | 45.0% | |
| TTCCTCGTGTTTCAGATCCA+AGG | + | chr6.3:43412685-43412704 | None:intergenic | 45.0% | |
| TTGTAGCACAGACCATGATG+AGG | - | chr6.3:43413517-43413536 | MS.gene57166:intron | 45.0% | |
| ! | AAAGAGCACGCTGGAGTAAT+GGG | - | chr6.3:43414476-43414495 | MS.gene57166:CDS | 45.0% |
| ! | ACCGATATTCCGGATCCTTT+TGG | - | chr6.3:43412710-43412729 | MS.gene57166:intron | 45.0% |
| ! | CCAGGTCCTTGCTCAAATTT+TGG | + | chr6.3:43412392-43412411 | None:intergenic | 45.0% |
| ! | GCTGAAGTTGTTGATGAAGC+TGG | - | chr6.3:43412482-43412501 | MS.gene57166:CDS | 45.0% |
| ! | GGAAATGGATTCCGTGTAGT+TGG | - | chr6.3:43413154-43413173 | MS.gene57166:intron | 45.0% |
| ! | GGGACTTTTCTACCTATTGG+TGG | - | chr6.3:43414496-43414515 | MS.gene57166:CDS | 45.0% |
| !! | AACCCTTCTGGAATTTCTGC+AGG | + | chr6.3:43412752-43412771 | None:intergenic | 45.0% |
| AAGGAACGATGGCATATGCC+AGG | - | chr6.3:43412634-43412653 | MS.gene57166:intron | 50.0% | |
| AGGAACACCGACCGATATTC+CGG | - | chr6.3:43412700-43412719 | MS.gene57166:intron | 50.0% | |
| AGTCTCCCACTACAAACTGG+TGG | - | chr6.3:43413569-43413588 | MS.gene57166:intron | 50.0% | |
| CACTTCTCCTCAAACCCTTC+TGG | + | chr6.3:43412764-43412783 | None:intergenic | 50.0% | |
| CAGAAGGGTTTGAGGAGAAG+TGG | - | chr6.3:43412762-43412781 | MS.gene57166:intron | 50.0% | |
| CATTACTCCAGCGTGCTCTT+TGG | + | chr6.3:43414477-43414496 | None:intergenic | 50.0% | |
| CCATTCACTGCGTGAATGCA+GGG | + | chr6.3:43413184-43413203 | None:intergenic | 50.0% | |
| CGTGGCGTAGAGGATAAGTT+AGG | - | chr6.3:43412812-43412831 | MS.gene57166:intron | 50.0% | |
| CTTCCACAGTATTTCGGCCT+TGG | - | chr6.3:43412665-43412684 | MS.gene57166:intron | 50.0% | |
| GATCCAAGGCCGAAATACTG+TGG | + | chr6.3:43412671-43412690 | None:intergenic | 50.0% | |
| GGAGTTGTTCTGCCACCAAT+AGG | + | chr6.3:43414511-43414530 | None:intergenic | 50.0% | |
| TCCATTCACTGCGTGAATGC+AGG | + | chr6.3:43413185-43413204 | None:intergenic | 50.0% | |
| TCGGGTGGAACCACAATGAT+TGG | + | chr6.3:43413779-43413798 | None:intergenic | 50.0% | |
| ! | AACAACACCAAAGAGCACGC+TGG | - | chr6.3:43414467-43414486 | MS.gene57166:CDS | 50.0% |
| ! | CAAAGAGCACGCTGGAGTAA+TGG | - | chr6.3:43414475-43414494 | MS.gene57166:CDS | 50.0% |
| CCCTGCATTCACGCAGTGAA+TGG | - | chr6.3:43413181-43413200 | MS.gene57166:intron | 55.0% | |
| GCTTCTACAGTTGCGCGTAG+AGG | - | chr6.3:43413811-43413830 | MS.gene57166:CDS | 55.0% | |
| TATCGATACGCGTGGCGTAG+AGG | - | chr6.3:43412802-43412821 | MS.gene57166:intron | 55.0% | |
| TGCAGGGTCTCCCAACTACA+CGG | + | chr6.3:43413168-43413187 | None:intergenic | 55.0% | |
| ! | GGCCTTGGATCTGAAACACG+AGG | - | chr6.3:43412680-43412699 | MS.gene57166:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 43412266 | 43414607 | 43412266 | ID=MS.gene57166 |
| chr6.3 | mRNA | 43412266 | 43414607 | 43412266 | ID=MS.gene57166.t1;Parent=MS.gene57166 |
| chr6.3 | exon | 43413753 | 43414607 | 43413753 | ID=MS.gene57166.t1.exon1;Parent=MS.gene57166.t1 |
| chr6.3 | CDS | 43413753 | 43414607 | 43413753 | ID=cds.MS.gene57166.t1;Parent=MS.gene57166.t1 |
| chr6.3 | exon | 43413218 | 43413376 | 43413218 | ID=MS.gene57166.t1.exon2;Parent=MS.gene57166.t1 |
| chr6.3 | CDS | 43413218 | 43413376 | 43413218 | ID=cds.MS.gene57166.t1;Parent=MS.gene57166.t1 |
| chr6.3 | exon | 43412266 | 43412562 | 43412266 | ID=MS.gene57166.t1.exon3;Parent=MS.gene57166.t1 |
| chr6.3 | CDS | 43412266 | 43412562 | 43412266 | ID=cds.MS.gene57166.t1;Parent=MS.gene57166.t1 |
| Gene Sequence |
| Protein sequence |
