AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65552


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65552.t1 MTR_6g033510 91.186 295 23 2 1 293 1 294 0.0 518
MS.gene65552.t1 MTR_6g033510 90.847 295 23 3 1 293 1 293 0.0 510
MS.gene65552.t1 MTR_6g033510 90.169 295 24 3 1 293 1 292 0.0 507
MS.gene65552.t1 MTR_6g033510 90.157 254 22 2 1 252 1 253 1.63e-156 437
MS.gene65552.t1 MTR_6g033510 92.105 228 18 0 66 293 10 237 4.33e-154 430
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65552.t1 AT3G26900 54.074 270 103 4 24 293 32 280 6.43e-93 276
MS.gene65552.t1 AT3G26900 54.074 270 103 4 24 293 32 280 6.43e-93 276
MS.gene65552.t1 AT3G26900 54.074 270 103 4 24 293 32 280 6.43e-93 276
MS.gene65552.t1 AT2G21940 35.354 198 127 1 80 276 89 286 6.46e-41 144
MS.gene65552.t1 AT2G21940 35.354 198 127 1 80 276 89 286 6.46e-41 144
MS.gene65552.t1 AT2G21940 35.354 198 127 1 80 276 89 286 6.46e-41 144
MS.gene65552.t1 AT2G21940 35.354 198 127 1 80 276 90 287 6.47e-41 144
MS.gene65552.t1 AT4G39540 35.323 201 127 3 80 277 85 285 3.07e-38 137
MS.gene65552.t1 AT4G39540 35.323 201 127 3 80 277 85 285 3.07e-38 137
MS.gene65552.t1 AT4G39540 33.482 224 135 5 80 292 85 305 3.14e-35 129
MS.gene65552.t1 AT2G21940 35.119 168 108 1 80 246 89 256 3.50e-31 117
MS.gene65552.t1 AT2G21940 35.119 168 108 1 80 246 89 256 3.50e-31 117
MS.gene65552.t1 AT2G21940 35.119 168 108 1 80 246 89 256 3.50e-31 117

Find 57 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTATTCAGCGATAATT+TGG 0.187404 6.4:+5670966 MS.gene65552:intron
ATTTGCCGGGTTGGTTAAAA+TGG 0.307457 6.4:-5672736 None:intergenic
TCATTTGAGATATCTGCTTC+AGG 0.356204 6.4:+5672085 MS.gene65552:CDS
AATTTGAATGGAACAGAGAT+TGG 0.358367 6.4:-5669245 None:intergenic
AAGCTCTCTTAAAACCAATC+TGG 0.360862 6.4:+5670819 MS.gene65552:CDS
CGTCTCATCACTCTCTTTGA+AGG 0.393096 6.4:-5671025 None:intergenic
CCATTTAGCTTCAGTGACTA+AGG 0.393197 6.4:+5670478 MS.gene65552:intron
TGCCATCATCTTCTTTACTC+TGG 0.422125 6.4:-5672701 None:intergenic
GGATTTATCTCTTGCGGTGA+AGG 0.424634 6.4:+5670511 MS.gene65552:CDS
CTAGTAGTTTGTGCTGGAAA+TGG 0.426753 6.4:+5671590 MS.gene65552:CDS
TGAGACATGGGATTACATTC+TGG 0.435684 6.4:+5672002 MS.gene65552:CDS
TACATATACATACATGGAAC+AGG 0.444402 6.4:-5669314 None:intergenic
TACAACAGAAGACATGGCTT+TGG 0.447101 6.4:+5672432 MS.gene65552:CDS
ATGAAGAAGATGAAGATTGA+AGG 0.448466 6.4:-5669205 None:intergenic
CTGCTGCTACTGAATTTGAA+TGG 0.452906 6.4:-5669257 None:intergenic
GCCTTTAGAGACTGTGGCTA+GGG 0.453980 6.4:+5672033 MS.gene65552:CDS
AACAGAAGACATGGCTTTGG+AGG 0.456859 6.4:+5672435 MS.gene65552:CDS
ACAGAAGTAGCTTCTCAGTT+GGG 0.457274 6.4:+5672388 MS.gene65552:intron
ATGGAGGACCCTTTCAGCTC+AGG 0.458494 6.4:-5670695 None:intergenic
CAAATGAAGGAAATTGACTC+TGG 0.470222 6.4:-5672069 None:intergenic
AGCTCTCTTAAAACCAATCT+GGG 0.470849 6.4:+5670820 MS.gene65552:CDS
ATTTGAATGGAACAGAGATT+GGG 0.484944 6.4:-5669244 None:intergenic
CAGAGATTGGGAATGGAAAG+TGG 0.485675 6.4:-5669232 None:intergenic
AATTTGGTGGAAGAAGCATT+AGG 0.490916 6.4:+5670982 MS.gene65552:CDS
ACTTAAGCAATTGTCGTCCA+TGG 0.493803 6.4:+5671562 MS.gene65552:CDS
AATGGAACAGAGATTGGGAA+TGG 0.495166 6.4:-5669239 None:intergenic
TACAGAAGTAGCTTCTCAGT+TGG 0.505172 6.4:+5672387 MS.gene65552:intron
ATATATCCCCTGAGCTGAAA+GGG 0.506809 6.4:+5670687 MS.gene65552:CDS
AACCAATCTGGGAAAACTGC+TGG 0.515195 6.4:+5670831 MS.gene65552:CDS
GAAGCAGATATCTCAAATGA+AGG 0.516865 6.4:-5672082 None:intergenic
AGAATGTAATCCCATGTCTC+AGG 0.517694 6.4:-5672000 None:intergenic
TCCCTAGCCACAGTCTCTAA+AGG 0.519416 6.4:-5672034 None:intergenic
TGAAGAAGATGAAGATTGAA+GGG 0.530653 6.4:-5669204 None:intergenic
TGGAGGACCCTTTCAGCTCA+GGG 0.534925 6.4:-5670694 None:intergenic
TATAGGGCGCTCCTGAGACA+TGG 0.543459 6.4:+5671989 MS.gene65552:intron
TTTATTCAGCGATAATTTGG+TGG 0.546126 6.4:+5670969 MS.gene65552:intron
ATAGGGCGCTCCTGAGACAT+GGG 0.554008 6.4:+5671990 MS.gene65552:intron
GATATATCCCCTGAGCTGAA+AGG 0.564630 6.4:+5670686 MS.gene65552:CDS
GGTCGACTAGTAGTTTGTGC+TGG 0.566628 6.4:+5671584 MS.gene65552:CDS
CGACATTACAACAGAAGACA+TGG 0.570058 6.4:+5672426 MS.gene65552:CDS
AGATTTGCCTTTAGAGACTG+TGG 0.571455 6.4:+5672027 MS.gene65552:CDS
TGCCTTTAGAGACTGTGGCT+AGG 0.575369 6.4:+5672032 MS.gene65552:CDS
TTGAAGGGATGAACAACTGA+CGG 0.580523 6.4:-5669189 None:intergenic
GACCAGAGTAAAGAAGATGA+TGG 0.587138 6.4:+5672699 MS.gene65552:CDS
CTTAAGCAATTGTCGTCCAT+GGG 0.588790 6.4:+5671563 MS.gene65552:CDS
TGCGACGGATTTATCTCTTG+CGG 0.591366 6.4:+5670505 MS.gene65552:CDS
AGTGACTAAGGTTTCTGCGA+CGG 0.594871 6.4:+5670490 MS.gene65552:CDS
GGGATGAACAACTGACGGGA+AGG 0.608462 6.4:-5669184 None:intergenic
TGAAGGGATGAACAACTGAC+GGG 0.616820 6.4:-5669188 None:intergenic
CTATACAATAAGTACAAAGA+CGG 0.623906 6.4:+5672244 MS.gene65552:CDS
CATTAGGTAATGGATGAACT+CGG 0.628657 6.4:+5672217 MS.gene65552:intron
ATGTTGAAGCAGATGAACAT+CGG 0.649867 6.4:+5669149 MS.gene65552:CDS
ACAAACTACTAGTCGACCCA+TGG 0.660468 6.4:-5671579 None:intergenic
GACGAGCTTCTATGACTCTG+AGG 0.674474 6.4:+5671044 MS.gene65552:CDS
TTGGTGGAAGAAGCATTAGG+TGG 0.675356 6.4:+5670985 MS.gene65552:CDS
GGAGGACCCTTTCAGCTCAG+GGG 0.693258 6.4:-5670693 None:intergenic
TGCTTCAGGATCTTACCCCG+AGG 0.709242 6.4:+5672099 MS.gene65552:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATTAATATAAAAA+AGG + chr6.4:5669851-5669870 MS.gene65552:intron 0.0%
!! ATAATTTATATTTGATGTTA+CGG + chr6.4:5669396-5669415 MS.gene65552:intron 10.0%
!!! TTTTCTCAAATTATTATTAA+TGG - chr6.4:5669635-5669654 None:intergenic 10.0%
!! AAAACTATATTATTTGGTAA+AGG - chr6.4:5671934-5671953 None:intergenic 15.0%
!! AAACTATATTATTTGGTAAA+GGG - chr6.4:5671933-5671952 None:intergenic 15.0%
!! ATATAAAAAAGGTAAAATTG+AGG + chr6.4:5669862-5669881 MS.gene65552:intron 15.0%
!! GAAGTTAAAACTATATTATT+TGG - chr6.4:5671940-5671959 None:intergenic 15.0%
!! TAAGTTATATCTATAACAAA+AGG - chr6.4:5671282-5671301 None:intergenic 15.0%
!! TAATAAATATCAACAATTGA+TGG - chr6.4:5670376-5670395 None:intergenic 15.0%
!!! TAAAATTTTGTCAACTTTTT+CGG + chr6.4:5672611-5672630 MS.gene65552:intron 15.0%
!!! TACAATTTTTCACTAATTTT+AGG + chr6.4:5672654-5672673 MS.gene65552:intron 15.0%
!!! TTGGTATTTTAATTTATTCA+TGG + chr6.4:5670306-5670325 MS.gene65552:intron 15.0%
!! AAAAAGAAATAAGCTATTTG+AGG - chr6.4:5672357-5672376 None:intergenic 20.0%
!! ATTCTTACCAATCAAAAATA+TGG - chr6.4:5670717-5670736 None:intergenic 20.0%
!! TAAACAATACTATCATTTGT+TGG + chr6.4:5670287-5670306 MS.gene65552:intron 20.0%
!! TATCAAGTTTAGCTAAAAAT+CGG - chr6.4:5670940-5670959 None:intergenic 20.0%
!! TATTAATTGACATTAGGTAA+TGG + chr6.4:5672207-5672226 MS.gene65552:intron 20.0%
!!! GTATTTGGGAATAATAATTT+TGG + chr6.4:5669459-5669478 MS.gene65552:intron 20.0%
!!! TTACCAAGTTTTTTCATATT+AGG + chr6.4:5672505-5672524 MS.gene65552:intron 20.0%
!!! TTCAAAGTATATAACTTTTC+CGG + chr6.4:5672296-5672315 MS.gene65552:intron 20.0%
!!! TTGTAATTTTGTTACATTCA+AGG - chr6.4:5671736-5671755 None:intergenic 20.0%
! AACAAGCTTAAAATAGCTAA+TGG - chr6.4:5671194-5671213 None:intergenic 25.0%
! AATAGAGACATTAACAGTTA+AGG - chr6.4:5672191-5672210 None:intergenic 25.0%
! AATTGTCTTAGACTTACTTA+GGG + chr6.4:5671072-5671091 MS.gene65552:intron 25.0%
! AGTCCTAATATGAAAAAACT+TGG - chr6.4:5672511-5672530 None:intergenic 25.0%
! ATACCTTGATCAAATAAATC+AGG - chr6.4:5670796-5670815 None:intergenic 25.0%
! ATTAAGTCGTTTATCCAAAT+AGG + chr6.4:5671331-5671350 MS.gene65552:intron 25.0%
! CAAAATTCAACTAATCTGTA+TGG + chr6.4:5671620-5671639 MS.gene65552:intron 25.0%
! CTATACAATAAGTACAAAGA+CGG + chr6.4:5672244-5672263 MS.gene65552:CDS 25.0%
! CTTATAACATACACAATCAA+TGG + chr6.4:5670739-5670758 MS.gene65552:intron 25.0%
! TAATTGTCTTAGACTTACTT+AGG + chr6.4:5671071-5671090 MS.gene65552:intron 25.0%
! TACTTTATTCAGCGATAATT+TGG + chr6.4:5670966-5670985 MS.gene65552:intron 25.0%
! TATCCTGAAATTTAAATGAG+AGG - chr6.4:5671455-5671474 None:intergenic 25.0%
! TCAACTGTAAACTCAAAATT+TGG + chr6.4:5669997-5670016 MS.gene65552:intron 25.0%
! TGTCTCTATTAATTGACATT+AGG + chr6.4:5672201-5672220 MS.gene65552:intron 25.0%
! TTAAGTCGTTTATCCAAATA+GGG + chr6.4:5671332-5671351 MS.gene65552:intron 25.0%
! TTATCCGGATATCTTAAATT+CGG - chr6.4:5669501-5669520 None:intergenic 25.0%
! TTCTACATTATCACTTCAAA+AGG - chr6.4:5670434-5670453 None:intergenic 25.0%
!! AGGTTTCATTTTGGATATAA+TGG + chr6.4:5670908-5670927 MS.gene65552:intron 25.0%
!! AGTTCTTAGTTTAACTTACT+TGG - chr6.4:5670231-5670250 None:intergenic 25.0%
!! ATTCTAGCTACTAATTTATC+CGG - chr6.4:5669516-5669535 None:intergenic 25.0%
!! GTTACTAAACAAGTCAATTT+TGG + chr6.4:5669954-5669973 MS.gene65552:intron 25.0%
!! TCAAAGTATATAACTTTTCC+GGG + chr6.4:5672297-5672316 MS.gene65552:intron 25.0%
!! TGTGAATTGATAGAGTATTT+GGG + chr6.4:5669445-5669464 MS.gene65552:intron 25.0%
!! TTTACCGAATTTAAGATATC+CGG + chr6.4:5669494-5669513 MS.gene65552:intron 25.0%
!! TTTGGTAAAAGGTTTCATTT+TGG + chr6.4:5670899-5670918 MS.gene65552:intron 25.0%
!!! TGCGATATTATTATTTTGAC+AGG + chr6.4:5670863-5670882 MS.gene65552:CDS 25.0%
!!! TTCACTAATTTTAGGTTCTT+CGG + chr6.4:5672662-5672681 MS.gene65552:intron 25.0%
AATTTGAATGGAACAGAGAT+TGG - chr6.4:5669248-5669267 None:intergenic 30.0%
ACTAAGGAAAGACATATTGA+AGG - chr6.4:5671765-5671784 None:intergenic 30.0%
ACTCTAGTATAGTAACTCTA+AGG - chr6.4:5670176-5670195 None:intergenic 30.0%
ACTTACTTGGTCTAAACTAA+AGG - chr6.4:5670218-5670237 None:intergenic 30.0%
AGAAGCTACTTCTGTAAAAA+AGG - chr6.4:5672383-5672402 None:intergenic 30.0%
AGCAATTCTTAGCTATGATT+TGG + chr6.4:5672474-5672493 MS.gene65552:intron 30.0%
AGGTTTAGATTTACTGTAAG+TGG - chr6.4:5672171-5672190 None:intergenic 30.0%
ATGAAGAAGATGAAGATTGA+AGG - chr6.4:5669208-5669227 None:intergenic 30.0%
ATTTGAATGGAACAGAGATT+GGG - chr6.4:5669247-5669266 None:intergenic 30.0%
CTACCTGATTTATTTGATCA+AGG + chr6.4:5670790-5670809 MS.gene65552:intron 30.0%
CTCGTCTATTTACATTTAGA+GGG - chr6.4:5670404-5670423 None:intergenic 30.0%
CTCTAGTATAGTAACTCTAA+GGG - chr6.4:5670175-5670194 None:intergenic 30.0%
CTTACCAATCAAAAATATGG+AGG - chr6.4:5670714-5670733 None:intergenic 30.0%
CTTACTTGGTCTAAACTAAA+GGG - chr6.4:5670217-5670236 None:intergenic 30.0%
GAGAGTTACATATACATACA+TGG - chr6.4:5669323-5669342 None:intergenic 30.0%
GTAAAATATGTAAAACAGCC+CGG - chr6.4:5672318-5672337 None:intergenic 30.0%
GTTCCTCTCATTTAAATTTC+AGG + chr6.4:5671449-5671468 MS.gene65552:intron 30.0%
TAACAGTAAGGAATTAACCT+CGG - chr6.4:5672119-5672138 None:intergenic 30.0%
TACATATACATACATGGAAC+AGG - chr6.4:5669317-5669336 None:intergenic 30.0%
TCTAGTATAGTAACTCTAAG+GGG - chr6.4:5670174-5670193 None:intergenic 30.0%
TCTATTTACATTTAGAGGGT+AGG - chr6.4:5670400-5670419 None:intergenic 30.0%
TCTGTTCATTCTTTGGTAAA+AGG + chr6.4:5670888-5670907 MS.gene65552:intron 30.0%
TGAAGAAGATGAAGATTGAA+GGG - chr6.4:5669207-5669226 None:intergenic 30.0%
TTAGAAGAGATCAGTTATGT+AGG - chr6.4:5671413-5671432 None:intergenic 30.0%
TTAGCATTGTTACTAACTCT+TGG + chr6.4:5672564-5672583 MS.gene65552:intron 30.0%
TTCAAAAAGACTGAATCTCA+GGG - chr6.4:5670616-5670635 None:intergenic 30.0%
TTCACCTCACAATCATAATT+GGG + chr6.4:5670551-5670570 MS.gene65552:intron 30.0%
TTTAGATTTACTGTAAGTGG+AGG - chr6.4:5672168-5672187 None:intergenic 30.0%
TTTATTCAGCGATAATTTGG+TGG + chr6.4:5670969-5670988 MS.gene65552:intron 30.0%
TTTCAAAAAGACTGAATCTC+AGG - chr6.4:5670617-5670636 None:intergenic 30.0%
! CATACACAATCAATGGTTTT+CGG + chr6.4:5670746-5670765 MS.gene65552:intron 30.0%
! CGATTGAACTTTTAACAGTA+AGG - chr6.4:5672131-5672150 None:intergenic 30.0%
! GAAAGATCAAACCTTCATTT+TGG + chr6.4:5671678-5671697 MS.gene65552:intron 30.0%
! GCTGATTTCAAAAACTATCT+TGG - chr6.4:5671229-5671248 None:intergenic 30.0%
! GTGTGAATTGATAGAGTATT+TGG + chr6.4:5669444-5669463 MS.gene65552:intron 30.0%
! TTTGTTGACTAAACTGACTA+AGG - chr6.4:5671813-5671832 None:intergenic 30.0%
!! TATAGTGGACAAGTTTATAG+CGG + chr6.4:5669736-5669755 MS.gene65552:intron 30.0%
!!! TCACTAATTTTAGGTTCTTC+GGG + chr6.4:5672663-5672682 MS.gene65552:intron 30.0%
AACAGTAAGGAATTAACCTC+GGG - chr6.4:5672118-5672137 None:intergenic 35.0%
AACTAAAGGGATCAAATCTG+TGG - chr6.4:5670204-5670223 None:intergenic 35.0%
AAGCTCTCTTAAAACCAATC+TGG + chr6.4:5670819-5670838 MS.gene65552:CDS 35.0%
AAGTAATTGTGTGACCGTTT+GGG + chr6.4:5671134-5671153 MS.gene65552:intron 35.0%
ACACCGTTTGACACATTTAA+GGG + chr6.4:5671891-5671910 MS.gene65552:intron 35.0%
ACACGCTCTTAAACTGTTAT+AGG + chr6.4:5671972-5671991 MS.gene65552:intron 35.0%
ACAGGTATCTGTTCATTCTT+TGG + chr6.4:5670881-5670900 MS.gene65552:intron 35.0%
ACATTCAAGGACCAAAATGA+AGG - chr6.4:5671692-5671711 None:intergenic 35.0%
ACGTGTAGAATTACGATTGT+TGG - chr6.4:5670144-5670163 None:intergenic 35.0%
AGCTCTCTTAAAACCAATCT+GGG + chr6.4:5670820-5670839 MS.gene65552:CDS 35.0%
ATAAGCTATTTGAGGACTTG+AGG - chr6.4:5672349-5672368 None:intergenic 35.0%
ATAAGTTATCCCAACCCAAA+CGG - chr6.4:5671151-5671170 None:intergenic 35.0%
ATGTCTTTCCTTAGTGAGTT+TGG + chr6.4:5671770-5671789 MS.gene65552:intron 35.0%
ATGTTGAAGCAGATGAACAT+CGG + chr6.4:5669149-5669168 MS.gene65552:CDS 35.0%
CAAACCCAATTATGATTGTG+AGG - chr6.4:5670558-5670577 None:intergenic 35.0%
CACGCTCTTAAACTGTTATA+GGG + chr6.4:5671973-5671992 MS.gene65552:intron 35.0%
CACTAACACAGATCAGAAAT+TGG + chr6.4:5670046-5670065 MS.gene65552:intron 35.0%
CAGTTATGTAGGAATAGGAT+AGG - chr6.4:5671402-5671421 None:intergenic 35.0%
CATTGTTACTAACTCTTGGA+TGG + chr6.4:5672568-5672587 MS.gene65552:intron 35.0%
CTTAGTCACTGAAGCTAAAT+GGG - chr6.4:5670480-5670499 None:intergenic 35.0%
GAAGCAGATATCTCAAATGA+AGG - chr6.4:5672085-5672104 None:intergenic 35.0%
GAGATCAGTTATGTAGGAAT+AGG - chr6.4:5671407-5671426 None:intergenic 35.0%
GCTCGTCTATTTACATTTAG+AGG - chr6.4:5670405-5670424 None:intergenic 35.0%
GTTCACCTCACAATCATAAT+TGG + chr6.4:5670550-5670569 MS.gene65552:intron 35.0%
TAAGTAATTGTGTGACCGTT+TGG + chr6.4:5671133-5671152 MS.gene65552:intron 35.0%
TAGCAAAACTGATGCTTGTA+TGG - chr6.4:5672537-5672556 None:intergenic 35.0%
TCACATAAGTCAATCCAAAC+AGG - chr6.4:5671098-5671117 None:intergenic 35.0%
TGTCCCTTAAATGTGTCAAA+CGG - chr6.4:5671897-5671916 None:intergenic 35.0%
! CAAATGAAGGAAATTGACTC+TGG - chr6.4:5672072-5672091 None:intergenic 35.0%
! GCTGATAAACTAGTCTATAG+TGG + chr6.4:5669721-5669740 MS.gene65552:intron 35.0%
! TCATTTGAGATATCTGCTTC+AGG + chr6.4:5672085-5672104 MS.gene65552:CDS 35.0%
!! AATTTGGTGGAAGAAGCATT+AGG + chr6.4:5670982-5671001 MS.gene65552:CDS 35.0%
!! CATTAGGTAATGGATGAACT+CGG + chr6.4:5672217-5672236 MS.gene65552:intron 35.0%
!!! AGGAAATTGACTCTGGTTTT+CGG - chr6.4:5672065-5672084 None:intergenic 35.0%
AATGGAACAGAGATTGGGAA+TGG - chr6.4:5669242-5669261 None:intergenic 40.0%
ACAGAAGTAGCTTCTCAGTT+GGG + chr6.4:5672388-5672407 MS.gene65552:intron 40.0%
ACAGTAAGGAATTAACCTCG+GGG - chr6.4:5672117-5672136 None:intergenic 40.0%
ACATGAAGTGAGACCCTATT+TGG - chr6.4:5671348-5671367 None:intergenic 40.0%
ACTTAAGCAATTGTCGTCCA+TGG + chr6.4:5671562-5671581 MS.gene65552:CDS 40.0%
AGAATGTAATCCCATGTCTC+AGG - chr6.4:5672003-5672022 None:intergenic 40.0%
ATATATCCCCTGAGCTGAAA+GGG + chr6.4:5670687-5670706 MS.gene65552:CDS 40.0%
CCTTAGTCACTGAAGCTAAA+TGG - chr6.4:5670481-5670500 None:intergenic 40.0%
CGACATTACAACAGAAGACA+TGG + chr6.4:5672426-5672445 MS.gene65552:CDS 40.0%
CTGCTGCTACTGAATTTGAA+TGG - chr6.4:5669260-5669279 None:intergenic 40.0%
CTTAAGCAATTGTCGTCCAT+GGG + chr6.4:5671563-5671582 MS.gene65552:CDS 40.0%
GACACCGTTTGACACATTTA+AGG + chr6.4:5671890-5671909 MS.gene65552:intron 40.0%
GACCAGAGTAAAGAAGATGA+TGG + chr6.4:5672699-5672718 MS.gene65552:CDS 40.0%
TACAACAGAAGACATGGCTT+TGG + chr6.4:5672432-5672451 MS.gene65552:CDS 40.0%
TACAGAAGTAGCTTCTCAGT+TGG + chr6.4:5672387-5672406 MS.gene65552:intron 40.0%
TGACTAAGGAAAGACACCTA+CGG - chr6.4:5671799-5671818 None:intergenic 40.0%
TGAGACATGGGATTACATTC+TGG + chr6.4:5672002-5672021 MS.gene65552:CDS 40.0%
TGCCATCATCTTCTTTACTC+TGG - chr6.4:5672704-5672723 None:intergenic 40.0%
TGTTACGGTACACATGCATT+AGG + chr6.4:5669411-5669430 MS.gene65552:intron 40.0%
TTGAAGGGATGAACAACTGA+CGG - chr6.4:5669192-5669211 None:intergenic 40.0%
! ACACTTTCGACCAAAAGTGT+CGG + chr6.4:5670071-5670090 MS.gene65552:intron 40.0%
! AGATTTGCCTTTAGAGACTG+TGG + chr6.4:5672027-5672046 MS.gene65552:CDS 40.0%
! CCATTTAGCTTCAGTGACTA+AGG + chr6.4:5670478-5670497 MS.gene65552:intron 40.0%
! CTAGTAGTTTGTGCTGGAAA+TGG + chr6.4:5671590-5671609 MS.gene65552:CDS 40.0%
!! CAAGTTTATAGCGGATAGAC+TGG + chr6.4:5669745-5669764 MS.gene65552:intron 40.0%
!! GGGTCCTCCATATTTTTGAT+TGG + chr6.4:5670707-5670726 MS.gene65552:CDS 40.0%
!! GTTTGGGTTGGGATAACTTA+TGG + chr6.4:5671150-5671169 MS.gene65552:intron 40.0%
!!! TCAATGGTTTTCGGTGTTTC+TGG + chr6.4:5670755-5670774 MS.gene65552:intron 40.0%
AAAGAAGCTGTATGCTCGTG+AGG + chr6.4:5669923-5669942 MS.gene65552:intron 45.0%
AACCAATCTGGGAAAACTGC+TGG + chr6.4:5670831-5670850 MS.gene65552:CDS 45.0%
AATTGTGTGACCGTTTGGGT+TGG + chr6.4:5671138-5671157 MS.gene65552:intron 45.0%
ACAAACTACTAGTCGACCCA+TGG - chr6.4:5671582-5671601 None:intergenic 45.0%
AGACTTACTTAGGGCCTGTT+TGG + chr6.4:5671081-5671100 MS.gene65552:intron 45.0%
AGTGACTAAGGTTTCTGCGA+CGG + chr6.4:5670490-5670509 MS.gene65552:CDS 45.0%
ATCATGTGTCAGTGTCGTGT+AGG + chr6.4:5669671-5669690 MS.gene65552:intron 45.0%
CAGAGATTGGGAATGGAAAG+TGG - chr6.4:5669235-5669254 None:intergenic 45.0%
CGTCTCATCACTCTCTTTGA+AGG - chr6.4:5671028-5671047 None:intergenic 45.0%
GACAGCGCTTAACACATTCA+AGG - chr6.4:5671705-5671724 None:intergenic 45.0%
GATATATCCCCTGAGCTGAA+AGG + chr6.4:5670686-5670705 MS.gene65552:CDS 45.0%
GGATTTATCTCTTGCGGTGA+AGG + chr6.4:5670511-5670530 MS.gene65552:CDS 45.0%
TACGGAGACCAAACTCACTA+AGG - chr6.4:5671781-5671800 None:intergenic 45.0%
TCATGTGTCAGTGTCGTGTA+GGG + chr6.4:5669672-5669691 MS.gene65552:intron 45.0%
TCTGTGTTAGTGCTACACCT+AGG - chr6.4:5670038-5670057 None:intergenic 45.0%
TGAAGGGATGAACAACTGAC+GGG - chr6.4:5669191-5669210 None:intergenic 45.0%
TTAGTGAGTTTGGTCTCCGT+AGG + chr6.4:5671780-5671799 MS.gene65552:intron 45.0%
TTGAGGACTTGAGGCATACA+TGG - chr6.4:5672340-5672359 None:intergenic 45.0%
! ATTGTGTGACCGTTTGGGTT+GGG + chr6.4:5671139-5671158 MS.gene65552:intron 45.0%
! TGCGACGGATTTATCTCTTG+CGG + chr6.4:5670505-5670524 MS.gene65552:CDS 45.0%
!! AACAGAAGACATGGCTTTGG+AGG + chr6.4:5672435-5672454 MS.gene65552:CDS 45.0%
!! TTGGTGGAAGAAGCATTAGG+TGG + chr6.4:5670985-5671004 MS.gene65552:CDS 45.0%
GACGAGCTTCTATGACTCTG+AGG + chr6.4:5671044-5671063 MS.gene65552:CDS 50.0%
GTATGCTCGTGAGGAGAAGT+TGG + chr6.4:5669932-5669951 MS.gene65552:intron 50.0%
TCCCTAGCCACAGTCTCTAA+AGG - chr6.4:5672037-5672056 None:intergenic 50.0%
TGCTACACCTAGGCTCTGTT+TGG - chr6.4:5670028-5670047 None:intergenic 50.0%
! AGCCAGCAGTTTTCCCAGAT+TGG - chr6.4:5670836-5670855 None:intergenic 50.0%
! GCCTTTAGAGACTGTGGCTA+GGG + chr6.4:5672033-5672052 MS.gene65552:CDS 50.0%
! GGTCGACTAGTAGTTTGTGC+TGG + chr6.4:5671584-5671603 MS.gene65552:CDS 50.0%
! TGCCTTTAGAGACTGTGGCT+AGG + chr6.4:5672032-5672051 MS.gene65552:CDS 50.0%
!! GTGTCGTGTAGGGCTTTGTT+TGG + chr6.4:5669682-5669701 MS.gene65552:intron 50.0%
!!! CACAGTAGCACCGACACTTT+TGG - chr6.4:5670084-5670103 None:intergenic 50.0%
ATGGAGGACCCTTTCAGCTC+AGG - chr6.4:5670698-5670717 None:intergenic 55.0%
CACCTAGGCTCTGTTTGGCA+AGG - chr6.4:5670023-5670042 None:intergenic 55.0%
CGACGTGCAGTGTTGTGTCA+AGG - chr6.4:5669609-5669628 None:intergenic 55.0%
GGGATGAACAACTGACGGGA+AGG - chr6.4:5669187-5669206 None:intergenic 55.0%
TGCTTCAGGATCTTACCCCG+AGG + chr6.4:5672099-5672118 MS.gene65552:CDS 55.0%
TGGAGGACCCTTTCAGCTCA+GGG - chr6.4:5670697-5670716 None:intergenic 55.0%
! ATAGGGCGCTCCTGAGACAT+GGG + chr6.4:5671990-5672009 MS.gene65552:intron 55.0%
! TATAGGGCGCTCCTGAGACA+TGG + chr6.4:5671989-5672008 MS.gene65552:intron 55.0%
GGAGGACCCTTTCAGCTCAG+GGG - chr6.4:5670696-5670715 None:intergenic 60.0%
GGCCTTGCCAAACAGAGCCT+AGG + chr6.4:5670018-5670037 MS.gene65552:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 5669128 5672744 5669128 ID=MS.gene65552
chr6.4 mRNA 5669128 5672744 5669128 ID=MS.gene65552.t1;Parent=MS.gene65552
chr6.4 exon 5669128 5669323 5669128 ID=MS.gene65552.t1.exon1;Parent=MS.gene65552.t1
chr6.4 CDS 5669128 5669323 5669128 ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1
chr6.4 exon 5670486 5670532 5670486 ID=MS.gene65552.t1.exon2;Parent=MS.gene65552.t1
chr6.4 CDS 5670486 5670532 5670486 ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1
chr6.4 exon 5670674 5670728 5670674 ID=MS.gene65552.t1.exon3;Parent=MS.gene65552.t1
chr6.4 CDS 5670674 5670728 5670674 ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1
chr6.4 exon 5670812 5670884 5670812 ID=MS.gene65552.t1.exon4;Parent=MS.gene65552.t1
chr6.4 CDS 5670812 5670884 5670812 ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1
chr6.4 exon 5670978 5671065 5670978 ID=MS.gene65552.t1.exon5;Parent=MS.gene65552.t1
chr6.4 CDS 5670978 5671065 5670978 ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1
chr6.4 exon 5671554 5671636 5671554 ID=MS.gene65552.t1.exon6;Parent=MS.gene65552.t1
chr6.4 CDS 5671554 5671636 5671554 ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1
chr6.4 exon 5671994 5672120 5671994 ID=MS.gene65552.t1.exon7;Parent=MS.gene65552.t1
chr6.4 CDS 5671994 5672120 5671994 ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1
chr6.4 exon 5672223 5672301 5672223 ID=MS.gene65552.t1.exon8;Parent=MS.gene65552.t1
chr6.4 CDS 5672223 5672301 5672223 ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1
chr6.4 exon 5672392 5672456 5672392 ID=MS.gene65552.t1.exon9;Parent=MS.gene65552.t1
chr6.4 CDS 5672392 5672456 5672392 ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1
chr6.4 exon 5672676 5672744 5672676 ID=MS.gene65552.t1.exon10;Parent=MS.gene65552.t1
chr6.4 CDS 5672676 5672744 5672676 ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1
Gene Sequence

>MS.gene65552

ATGGAGAAGGCAGCAAGCAGTATGTTGAAGCAGATGAACATCGGCAGTCGTCTTGTCCTTCCCGTCAGTTGTTCATCCCTTCAATCTTCATCTTCTTCATCTCTCCACTTTCCATTCCCAATCTCTGTTCCATTCAAATTCAGTAGCAGCAGAAGATCAACTAACTCTGTTTCTGACGCTGCTTTTCCTGTTCCATGTATGTATATGTAACTCTCTCTTTCTCTTTCTTAACTCTCAATTTTGTATACATGAATTATTTCATATACTTATAATTTATATTTGATGTTACGGTACACATGCATTAGGATTCATTTTTGTGTGAATTGATAGAGTATTTGGGAATAATAATTTTGGATTTAAGTGCTTTTTACCGAATTTAAGATATCCGGATAAATTAGTAGCTAGAATTGTGACATAATACATGACATTGAATAGTGATCTTATGAAGCAGTAACACAGACAGTTGACACAACACTGACCTTGACACAACACTGCACGTCGTCGCCATTAATAATAATTTGAGAAAATTACATAATTGAGTGTATCATGTGTCAGTGTCGTGTAGGGCTTTGTTTGGTAAAAAATGACTGATAGCTGATAAACTAGTCTATAGTGGACAAGTTTATAGCGGATAGACTGGCTAATTGAATTTATAGTGTTATGTAAAATTAGTTGATAAATACGAAATGATATCAAAATATATTTTTAATTTATATTTTATTATTTTTTAATTAATATAAAAAAGGTAAAATTGAGGAAAAAATGATAAGCTATAAGCTACTTGAAATAGTTTATAAAGAAGCTGTATGCTCGTGAGGAGAAGTTGGTTACTAAACAAGTCAATTTTGGTCATATGAGCGTATAAGCTATCAACTGTAAACTCAAAATTTGGCCTTGCCAAACAGAGCCTAGGTGTAGCACTAACACAGATCAGAAATTGGATACACTTTCGACCAAAAGTGTCGGTGCTACTGTGACTTTGACGTTAAAATTTCTTTACTTGATTTTGATTACCAACAATCGTAATTCTACACGTGTGTTATCCCCTTAGAGTTACTATACTAGAGTTATATCCACAGATTTGATCCCTTTAGTTTAGACCAAGTAAGTTAAACTAAGAACTATTGATAAGAAATGCTAAATCAACAAATTTGATCTCTAAACAATACTATCATTTGTTGGTATTTTAATTTATTCATGGATTTTCTGTGATTCTGTATGCATGAGTGAGAGTTGATTTTTCTACCATCAATTGTTGATATTTATTATCCTACCCTCTAAATGTAAATAGACGAGCAAGATTCCTTTTGAAGTGATAATGTAGAAATTGATGTTCTTACTTTGTTCTGCCCATTTAGCTTCAGTGACTAAGGTTTCTGCGACGGATTTATCTCTTGCGGTGAAGGTGAGATTACTCTTCATGTTCACCTCACAATCATAATTGGGTTTGTTGTTTTGTTTTTATTCTCTGTATAATATAATTGACCCTGAGATTCAGTCTTTTTGAAATGAAATTGCGCATTTTAACTGTTATCGTTTGATGCAGAAAAAAGCAGCAGATATATCCCCTGAGCTGAAAGGGTCCTCCATATTTTTGATTGGTAAGAATAACTTATAACATACACAATCAATGGTTTTCGGTGTTTCTGGCGTATTGTGACTCTACCTGATTTATTTGATCAAGGTATGAAAAGCTCTCTTAAAACCAATCTGGGAAAACTGCTGGCTGATGTATTGCGATATTATTATTTTGACAGGTATCTGTTCATTCTTTGGTAAAAGGTTTCATTTTGGATATAATGGTTGCTTCCGATTTTTAGCTAAACTTGATATTTATTTACTTTATTCAGCGATAATTTGGTGGAAGAAGCATTAGGTGGTGCAGCAGCTGCAAAATCCTTCAAAGAGAGTGATGAGACGAGCTTCTATGACTCTGAGGTAATTAATTGTCTTAGACTTACTTAGGGCCTGTTTGGATTGACTTATGTGAGCTTATTTACTAGCATAAGTAATTGTGTGACCGTTTGGGTTGGGATAACTTATGGAAACAACTTCTGACATGTCCATTAGCTATTTTAAGCTTGTTCACACAAGCTATCCAAGATAGTTTTTGAAATCAGCTTATTTGAAAACAATTTTGACTTTATTTTACCTTTTGTTATAGATATAACTTATACATAAGCGCTTATGCTATAAACACTTAATTAAGTCGTTTATCCAAATAGGGTCTCACTTCATGTTTATGTACTTTTGTGCATCAAACAATGCGATCCTATCCTATTCCTACATAACTGATCTCTTCTAATTTGTTGAACTAATGTGTTCCTCTCATTTAAATTTCAGGATAAAGATGCTCATGTACATCAATCATCTCTGATGAATTAAACTATAAGTTATACTTATGTTTTAAATGTCAAATACTGCAGACTGAAGTACTTAAGCAATTGTCGTCCATGGGTCGACTAGTAGTTTGTGCTGGAAATGGCGCTGTACAAAATTCAACTAATCTGTATGGATTTATAGTTGCAAGATCACTTTTCTTAACTTTACGAAAGATCAAACCTTCATTTTGGTCCTTGAATGTGTTAAGCGCTGTCACTATAGTCCTTGAATGTAACAAAATTACAAAAACATCCTTCAATATGTCTTTCCTTAGTGAGTTTGGTCTCCGTAGGTGTCTTTCCTTAGTCAGTTTAGTCAACAAAATTACTAACAAAAGACACACTCAAAGATGTTTTTGATATACATTCAAGAACTATAGTGACACCGTTTGACACATTTAAGGGACAAAATGACGATTTACCCTTTACCAAATAATATAGTTTTAACTTCAATATAGTTTTAACACGCTCTTAAACTGTTATAGGGCGCTCCTGAGACATGGGATTACATTCTGGATAGATTTGCCTTTAGAGACTGTGGCTAGGGATGTAACCGAAAACCAGAGTCAATTTCCTTCATTTGAGATATCTGCTTCAGGATCTTACCCCGAGGTTAATTCCTTACTGTTAAAAGTTCAATCGTATATGTTTACAAGCCTCCACTTACAGTAAATCTAAACCTTAACTGTTAATGTCTCTATTAATTGACATTAGGTAATGGATGAACTCGGTGCTCTATACAATAAGTACAAAGACGGATATGCTACAGCTGATGCAACTATTTCACTTCAAAGTATATAACTTTTCCGGGCTGTTTTACATATTTTACCATGTATGCCTCAAGTCCTCAAATAGCTTATTTCTTTTTTTTCCTTTTTTACAGAAGTAGCTTCTCAGTTGGGTTATGAAAACGTAGACGACATTACAACAGAAGACATGGCTTTGGAGGTTATAATTTTTATTCAAGCAATTCTTAGCTATGATTTGGAGCATGTTTTACCAAGTTTTTTCATATTAGGACTGTACCATACAAGCATCAGTTTTGCTATAATGACTTAGCATTGTTACTAACTCTTGGATGGATATTCTTCACACATTTTGATAAAATTTTGTCAACTTTTTCGGCTATGTATCATTATCTTACTTACAATTTTTCACTAATTTTAGGTTCTTCGGGAGATTGAGAAGTTGACCAGAGTAAAGAAGATGATGGCAGAAGCTGCAAGACCATTTTAA

Protein sequence

>MS.gene65552.t1

MEKAASSMLKQMNIGSRLVLPVSCSSLQSSSSSSLHFPFPISVPFKFSSSRRSTNSVSDAAFPVPSSVTKVSATDLSLAVKKKAADISPELKGSSIFLIGMKSSLKTNLGKLLADVLRYYYFDSDNLVEEALGGAAAAKSFKESDETSFYDSETEVLKQLSSMGRLVVCAGNGAVQNSTNLALLRHGITFWIDLPLETVARDVTENQSQFPSFEISASGSYPEVMDELGALYNKYKDGYATADATISLQKVASQLGYENVDDITTEDMALEVLREIEKLTRVKKMMAEAARPF