Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65552.t1 | XP_013451654.1 | 90.8 | 294 | 26 | 1 | 1 | 293 | 1 | 294 | 6.90E-123 | 450.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65552.t1 | Q9LW20 | 56.2 | 240 | 93 | 2 | 54 | 293 | 53 | 280 | 1.0e-66 | 255.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65552.t1 | A0A072U7L4 | 90.8 | 294 | 26 | 1 | 1 | 293 | 1 | 294 | 5.0e-123 | 450.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049346 | MS.gene65552 | 0.824736 | 6.87E-54 | -1.69E-46 |
MS.gene049758 | MS.gene65552 | 0.844375 | 7.86E-59 | -1.69E-46 |
MS.gene049910 | MS.gene65552 | 0.811962 | 5.39E-51 | -1.69E-46 |
MS.gene050231 | MS.gene65552 | 0.800578 | 1.35E-48 | -1.69E-46 |
MS.gene050301 | MS.gene65552 | 0.843871 | 1.07E-58 | -1.69E-46 |
MS.gene050330 | MS.gene65552 | -0.810866 | 9.32E-51 | -1.69E-46 |
MS.gene050397 | MS.gene65552 | 0.812997 | 3.20E-51 | -1.69E-46 |
MS.gene050406 | MS.gene65552 | 0.824001 | 1.02E-53 | -1.69E-46 |
MS.gene050426 | MS.gene65552 | -0.814421 | 1.55E-51 | -1.69E-46 |
MS.gene050464 | MS.gene65552 | 0.82005 | 8.42E-53 | -1.69E-46 |
MS.gene050529 | MS.gene65552 | 0.844951 | 5.50E-59 | -1.69E-46 |
MS.gene050558 | MS.gene65552 | 0.803021 | 4.25E-49 | -1.69E-46 |
MS.gene050642 | MS.gene65552 | 0.825474 | 4.60E-54 | -1.69E-46 |
MS.gene051171 | MS.gene65552 | 0.811475 | 6.87E-51 | -1.69E-46 |
MS.gene051240 | MS.gene65552 | 0.820043 | 8.45E-53 | -1.69E-46 |
MS.gene051242 | MS.gene65552 | 0.806497 | 7.99E-50 | -1.69E-46 |
MS.gene051471 | MS.gene65552 | 0.805705 | 1.17E-49 | -1.69E-46 |
MS.gene051525 | MS.gene65552 | 0.80319 | 3.92E-49 | -1.69E-46 |
MS.gene051582 | MS.gene65552 | 0.857456 | 1.61E-62 | -1.69E-46 |
MS.gene051860 | MS.gene65552 | 0.810006 | 1.43E-50 | -1.69E-46 |
MS.gene051983 | MS.gene65552 | 0.821224 | 4.52E-53 | -1.69E-46 |
MS.gene052011 | MS.gene65552 | -0.816168 | 6.35E-52 | -1.69E-46 |
MS.gene052078 | MS.gene65552 | 0.810865 | 9.32E-51 | -1.69E-46 |
MS.gene052178 | MS.gene65552 | 0.810649 | 1.04E-50 | -1.69E-46 |
MS.gene052253 | MS.gene65552 | 0.804211 | 2.41E-49 | -1.69E-46 |
MS.gene052310 | MS.gene65552 | 0.801198 | 1.01E-48 | -1.69E-46 |
MS.gene052340 | MS.gene65552 | 0.82122 | 4.53E-53 | -1.69E-46 |
MS.gene052600 | MS.gene65552 | 0.805724 | 1.16E-49 | -1.69E-46 |
MS.gene053209 | MS.gene65552 | 0.811468 | 6.90E-51 | -1.69E-46 |
MS.gene053557 | MS.gene65552 | 0.81418 | 1.76E-51 | -1.69E-46 |
MS.gene053836 | MS.gene65552 | 0.864546 | 1.12E-64 | -1.69E-46 |
MS.gene053907 | MS.gene65552 | 0.827482 | 1.53E-54 | -1.69E-46 |
MS.gene053971 | MS.gene65552 | 0.848974 | 4.35E-60 | -1.69E-46 |
MS.gene054473 | MS.gene65552 | 0.824213 | 9.12E-54 | -1.69E-46 |
MS.gene054983 | MS.gene65552 | 0.837089 | 6.38E-57 | -1.69E-46 |
MS.gene055116 | MS.gene65552 | 0.813283 | 2.77E-51 | -1.69E-46 |
MS.gene055277 | MS.gene65552 | 0.810371 | 1.19E-50 | -1.69E-46 |
MS.gene055422 | MS.gene65552 | 0.8469 | 1.62E-59 | -1.69E-46 |
MS.gene055428 | MS.gene65552 | 0.865226 | 6.88E-65 | -1.69E-46 |
MS.gene05553 | MS.gene65552 | 0.819477 | 1.14E-52 | -1.69E-46 |
MS.gene055712 | MS.gene65552 | 0.80635 | 8.58E-50 | -1.69E-46 |
MS.gene056407 | MS.gene65552 | 0.837845 | 4.09E-57 | -1.69E-46 |
MS.gene056451 | MS.gene65552 | 0.810049 | 1.40E-50 | -1.69E-46 |
MS.gene056612 | MS.gene65552 | 0.827059 | 1.93E-54 | -1.69E-46 |
MS.gene056979 | MS.gene65552 | 0.807827 | 4.18E-50 | -1.69E-46 |
MS.gene05702 | MS.gene65552 | 0.825974 | 3.50E-54 | -1.69E-46 |
MS.gene057121 | MS.gene65552 | 0.853046 | 3.09E-61 | -1.69E-46 |
MS.gene057245 | MS.gene65552 | 0.807302 | 5.40E-50 | -1.69E-46 |
MS.gene058002 | MS.gene65552 | 0.852822 | 3.59E-61 | -1.69E-46 |
MS.gene05811 | MS.gene65552 | 0.842465 | 2.54E-58 | -1.69E-46 |
MS.gene058142 | MS.gene65552 | 0.838417 | 2.91E-57 | -1.69E-46 |
MS.gene058233 | MS.gene65552 | 0.834984 | 2.19E-56 | -1.69E-46 |
MS.gene058276 | MS.gene65552 | 0.872257 | 3.65E-67 | -1.69E-46 |
MS.gene058293 | MS.gene65552 | 0.810583 | 1.07E-50 | -1.69E-46 |
MS.gene058710 | MS.gene65552 | 0.807124 | 5.89E-50 | -1.69E-46 |
MS.gene058746 | MS.gene65552 | 0.815572 | 8.63E-52 | -1.69E-46 |
MS.gene05907 | MS.gene65552 | 0.835854 | 1.32E-56 | -1.69E-46 |
MS.gene059247 | MS.gene65552 | 0.830285 | 3.20E-55 | -1.69E-46 |
MS.gene059518 | MS.gene65552 | 0.828699 | 7.77E-55 | -1.69E-46 |
MS.gene059692 | MS.gene65552 | 0.816133 | 6.47E-52 | -1.69E-46 |
MS.gene059695 | MS.gene65552 | 0.816875 | 4.41E-52 | -1.69E-46 |
MS.gene05984 | MS.gene65552 | 0.86417 | 1.47E-64 | -1.69E-46 |
MS.gene059894 | MS.gene65552 | 0.834556 | 2.80E-56 | -1.69E-46 |
MS.gene060407 | MS.gene65552 | 0.809989 | 1.44E-50 | -1.69E-46 |
MS.gene061049 | MS.gene65552 | 0.838851 | 2.25E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65552.t1 | MTR_6g033510 | 91.186 | 295 | 23 | 2 | 1 | 293 | 1 | 294 | 0.0 | 518 |
MS.gene65552.t1 | MTR_6g033510 | 90.847 | 295 | 23 | 3 | 1 | 293 | 1 | 293 | 0.0 | 510 |
MS.gene65552.t1 | MTR_6g033510 | 90.169 | 295 | 24 | 3 | 1 | 293 | 1 | 292 | 0.0 | 507 |
MS.gene65552.t1 | MTR_6g033510 | 90.157 | 254 | 22 | 2 | 1 | 252 | 1 | 253 | 1.63e-156 | 437 |
MS.gene65552.t1 | MTR_6g033510 | 92.105 | 228 | 18 | 0 | 66 | 293 | 10 | 237 | 4.33e-154 | 430 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65552.t1 | AT3G26900 | 54.074 | 270 | 103 | 4 | 24 | 293 | 32 | 280 | 6.43e-93 | 276 |
MS.gene65552.t1 | AT3G26900 | 54.074 | 270 | 103 | 4 | 24 | 293 | 32 | 280 | 6.43e-93 | 276 |
MS.gene65552.t1 | AT3G26900 | 54.074 | 270 | 103 | 4 | 24 | 293 | 32 | 280 | 6.43e-93 | 276 |
MS.gene65552.t1 | AT2G21940 | 35.354 | 198 | 127 | 1 | 80 | 276 | 89 | 286 | 6.46e-41 | 144 |
MS.gene65552.t1 | AT2G21940 | 35.354 | 198 | 127 | 1 | 80 | 276 | 89 | 286 | 6.46e-41 | 144 |
MS.gene65552.t1 | AT2G21940 | 35.354 | 198 | 127 | 1 | 80 | 276 | 89 | 286 | 6.46e-41 | 144 |
MS.gene65552.t1 | AT2G21940 | 35.354 | 198 | 127 | 1 | 80 | 276 | 90 | 287 | 6.47e-41 | 144 |
MS.gene65552.t1 | AT4G39540 | 35.323 | 201 | 127 | 3 | 80 | 277 | 85 | 285 | 3.07e-38 | 137 |
MS.gene65552.t1 | AT4G39540 | 35.323 | 201 | 127 | 3 | 80 | 277 | 85 | 285 | 3.07e-38 | 137 |
MS.gene65552.t1 | AT4G39540 | 33.482 | 224 | 135 | 5 | 80 | 292 | 85 | 305 | 3.14e-35 | 129 |
MS.gene65552.t1 | AT2G21940 | 35.119 | 168 | 108 | 1 | 80 | 246 | 89 | 256 | 3.50e-31 | 117 |
MS.gene65552.t1 | AT2G21940 | 35.119 | 168 | 108 | 1 | 80 | 246 | 89 | 256 | 3.50e-31 | 117 |
MS.gene65552.t1 | AT2G21940 | 35.119 | 168 | 108 | 1 | 80 | 246 | 89 | 256 | 3.50e-31 | 117 |
Find 57 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTTTATTCAGCGATAATT+TGG | 0.187404 | 6.4:+5670966 | MS.gene65552:intron |
ATTTGCCGGGTTGGTTAAAA+TGG | 0.307457 | 6.4:-5672736 | None:intergenic |
TCATTTGAGATATCTGCTTC+AGG | 0.356204 | 6.4:+5672085 | MS.gene65552:CDS |
AATTTGAATGGAACAGAGAT+TGG | 0.358367 | 6.4:-5669245 | None:intergenic |
AAGCTCTCTTAAAACCAATC+TGG | 0.360862 | 6.4:+5670819 | MS.gene65552:CDS |
CGTCTCATCACTCTCTTTGA+AGG | 0.393096 | 6.4:-5671025 | None:intergenic |
CCATTTAGCTTCAGTGACTA+AGG | 0.393197 | 6.4:+5670478 | MS.gene65552:intron |
TGCCATCATCTTCTTTACTC+TGG | 0.422125 | 6.4:-5672701 | None:intergenic |
GGATTTATCTCTTGCGGTGA+AGG | 0.424634 | 6.4:+5670511 | MS.gene65552:CDS |
CTAGTAGTTTGTGCTGGAAA+TGG | 0.426753 | 6.4:+5671590 | MS.gene65552:CDS |
TGAGACATGGGATTACATTC+TGG | 0.435684 | 6.4:+5672002 | MS.gene65552:CDS |
TACATATACATACATGGAAC+AGG | 0.444402 | 6.4:-5669314 | None:intergenic |
TACAACAGAAGACATGGCTT+TGG | 0.447101 | 6.4:+5672432 | MS.gene65552:CDS |
ATGAAGAAGATGAAGATTGA+AGG | 0.448466 | 6.4:-5669205 | None:intergenic |
CTGCTGCTACTGAATTTGAA+TGG | 0.452906 | 6.4:-5669257 | None:intergenic |
GCCTTTAGAGACTGTGGCTA+GGG | 0.453980 | 6.4:+5672033 | MS.gene65552:CDS |
AACAGAAGACATGGCTTTGG+AGG | 0.456859 | 6.4:+5672435 | MS.gene65552:CDS |
ACAGAAGTAGCTTCTCAGTT+GGG | 0.457274 | 6.4:+5672388 | MS.gene65552:intron |
ATGGAGGACCCTTTCAGCTC+AGG | 0.458494 | 6.4:-5670695 | None:intergenic |
CAAATGAAGGAAATTGACTC+TGG | 0.470222 | 6.4:-5672069 | None:intergenic |
AGCTCTCTTAAAACCAATCT+GGG | 0.470849 | 6.4:+5670820 | MS.gene65552:CDS |
ATTTGAATGGAACAGAGATT+GGG | 0.484944 | 6.4:-5669244 | None:intergenic |
CAGAGATTGGGAATGGAAAG+TGG | 0.485675 | 6.4:-5669232 | None:intergenic |
AATTTGGTGGAAGAAGCATT+AGG | 0.490916 | 6.4:+5670982 | MS.gene65552:CDS |
ACTTAAGCAATTGTCGTCCA+TGG | 0.493803 | 6.4:+5671562 | MS.gene65552:CDS |
AATGGAACAGAGATTGGGAA+TGG | 0.495166 | 6.4:-5669239 | None:intergenic |
TACAGAAGTAGCTTCTCAGT+TGG | 0.505172 | 6.4:+5672387 | MS.gene65552:intron |
ATATATCCCCTGAGCTGAAA+GGG | 0.506809 | 6.4:+5670687 | MS.gene65552:CDS |
AACCAATCTGGGAAAACTGC+TGG | 0.515195 | 6.4:+5670831 | MS.gene65552:CDS |
GAAGCAGATATCTCAAATGA+AGG | 0.516865 | 6.4:-5672082 | None:intergenic |
AGAATGTAATCCCATGTCTC+AGG | 0.517694 | 6.4:-5672000 | None:intergenic |
TCCCTAGCCACAGTCTCTAA+AGG | 0.519416 | 6.4:-5672034 | None:intergenic |
TGAAGAAGATGAAGATTGAA+GGG | 0.530653 | 6.4:-5669204 | None:intergenic |
TGGAGGACCCTTTCAGCTCA+GGG | 0.534925 | 6.4:-5670694 | None:intergenic |
TATAGGGCGCTCCTGAGACA+TGG | 0.543459 | 6.4:+5671989 | MS.gene65552:intron |
TTTATTCAGCGATAATTTGG+TGG | 0.546126 | 6.4:+5670969 | MS.gene65552:intron |
ATAGGGCGCTCCTGAGACAT+GGG | 0.554008 | 6.4:+5671990 | MS.gene65552:intron |
GATATATCCCCTGAGCTGAA+AGG | 0.564630 | 6.4:+5670686 | MS.gene65552:CDS |
GGTCGACTAGTAGTTTGTGC+TGG | 0.566628 | 6.4:+5671584 | MS.gene65552:CDS |
CGACATTACAACAGAAGACA+TGG | 0.570058 | 6.4:+5672426 | MS.gene65552:CDS |
AGATTTGCCTTTAGAGACTG+TGG | 0.571455 | 6.4:+5672027 | MS.gene65552:CDS |
TGCCTTTAGAGACTGTGGCT+AGG | 0.575369 | 6.4:+5672032 | MS.gene65552:CDS |
TTGAAGGGATGAACAACTGA+CGG | 0.580523 | 6.4:-5669189 | None:intergenic |
GACCAGAGTAAAGAAGATGA+TGG | 0.587138 | 6.4:+5672699 | MS.gene65552:CDS |
CTTAAGCAATTGTCGTCCAT+GGG | 0.588790 | 6.4:+5671563 | MS.gene65552:CDS |
TGCGACGGATTTATCTCTTG+CGG | 0.591366 | 6.4:+5670505 | MS.gene65552:CDS |
AGTGACTAAGGTTTCTGCGA+CGG | 0.594871 | 6.4:+5670490 | MS.gene65552:CDS |
GGGATGAACAACTGACGGGA+AGG | 0.608462 | 6.4:-5669184 | None:intergenic |
TGAAGGGATGAACAACTGAC+GGG | 0.616820 | 6.4:-5669188 | None:intergenic |
CTATACAATAAGTACAAAGA+CGG | 0.623906 | 6.4:+5672244 | MS.gene65552:CDS |
CATTAGGTAATGGATGAACT+CGG | 0.628657 | 6.4:+5672217 | MS.gene65552:intron |
ATGTTGAAGCAGATGAACAT+CGG | 0.649867 | 6.4:+5669149 | MS.gene65552:CDS |
ACAAACTACTAGTCGACCCA+TGG | 0.660468 | 6.4:-5671579 | None:intergenic |
GACGAGCTTCTATGACTCTG+AGG | 0.674474 | 6.4:+5671044 | MS.gene65552:CDS |
TTGGTGGAAGAAGCATTAGG+TGG | 0.675356 | 6.4:+5670985 | MS.gene65552:CDS |
GGAGGACCCTTTCAGCTCAG+GGG | 0.693258 | 6.4:-5670693 | None:intergenic |
TGCTTCAGGATCTTACCCCG+AGG | 0.709242 | 6.4:+5672099 | MS.gene65552:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTAATTAATATAAAAA+AGG | + | chr6.4:5669851-5669870 | MS.gene65552:intron | 0.0% |
!! | ATAATTTATATTTGATGTTA+CGG | + | chr6.4:5669396-5669415 | MS.gene65552:intron | 10.0% |
!!! | TTTTCTCAAATTATTATTAA+TGG | - | chr6.4:5669635-5669654 | None:intergenic | 10.0% |
!! | AAAACTATATTATTTGGTAA+AGG | - | chr6.4:5671934-5671953 | None:intergenic | 15.0% |
!! | AAACTATATTATTTGGTAAA+GGG | - | chr6.4:5671933-5671952 | None:intergenic | 15.0% |
!! | ATATAAAAAAGGTAAAATTG+AGG | + | chr6.4:5669862-5669881 | MS.gene65552:intron | 15.0% |
!! | GAAGTTAAAACTATATTATT+TGG | - | chr6.4:5671940-5671959 | None:intergenic | 15.0% |
!! | TAAGTTATATCTATAACAAA+AGG | - | chr6.4:5671282-5671301 | None:intergenic | 15.0% |
!! | TAATAAATATCAACAATTGA+TGG | - | chr6.4:5670376-5670395 | None:intergenic | 15.0% |
!!! | TAAAATTTTGTCAACTTTTT+CGG | + | chr6.4:5672611-5672630 | MS.gene65552:intron | 15.0% |
!!! | TACAATTTTTCACTAATTTT+AGG | + | chr6.4:5672654-5672673 | MS.gene65552:intron | 15.0% |
!!! | TTGGTATTTTAATTTATTCA+TGG | + | chr6.4:5670306-5670325 | MS.gene65552:intron | 15.0% |
!! | AAAAAGAAATAAGCTATTTG+AGG | - | chr6.4:5672357-5672376 | None:intergenic | 20.0% |
!! | ATTCTTACCAATCAAAAATA+TGG | - | chr6.4:5670717-5670736 | None:intergenic | 20.0% |
!! | TAAACAATACTATCATTTGT+TGG | + | chr6.4:5670287-5670306 | MS.gene65552:intron | 20.0% |
!! | TATCAAGTTTAGCTAAAAAT+CGG | - | chr6.4:5670940-5670959 | None:intergenic | 20.0% |
!! | TATTAATTGACATTAGGTAA+TGG | + | chr6.4:5672207-5672226 | MS.gene65552:intron | 20.0% |
!!! | GTATTTGGGAATAATAATTT+TGG | + | chr6.4:5669459-5669478 | MS.gene65552:intron | 20.0% |
!!! | TTACCAAGTTTTTTCATATT+AGG | + | chr6.4:5672505-5672524 | MS.gene65552:intron | 20.0% |
!!! | TTCAAAGTATATAACTTTTC+CGG | + | chr6.4:5672296-5672315 | MS.gene65552:intron | 20.0% |
!!! | TTGTAATTTTGTTACATTCA+AGG | - | chr6.4:5671736-5671755 | None:intergenic | 20.0% |
! | AACAAGCTTAAAATAGCTAA+TGG | - | chr6.4:5671194-5671213 | None:intergenic | 25.0% |
! | AATAGAGACATTAACAGTTA+AGG | - | chr6.4:5672191-5672210 | None:intergenic | 25.0% |
! | AATTGTCTTAGACTTACTTA+GGG | + | chr6.4:5671072-5671091 | MS.gene65552:intron | 25.0% |
! | AGTCCTAATATGAAAAAACT+TGG | - | chr6.4:5672511-5672530 | None:intergenic | 25.0% |
! | ATACCTTGATCAAATAAATC+AGG | - | chr6.4:5670796-5670815 | None:intergenic | 25.0% |
! | ATTAAGTCGTTTATCCAAAT+AGG | + | chr6.4:5671331-5671350 | MS.gene65552:intron | 25.0% |
! | CAAAATTCAACTAATCTGTA+TGG | + | chr6.4:5671620-5671639 | MS.gene65552:intron | 25.0% |
! | CTATACAATAAGTACAAAGA+CGG | + | chr6.4:5672244-5672263 | MS.gene65552:CDS | 25.0% |
! | CTTATAACATACACAATCAA+TGG | + | chr6.4:5670739-5670758 | MS.gene65552:intron | 25.0% |
! | TAATTGTCTTAGACTTACTT+AGG | + | chr6.4:5671071-5671090 | MS.gene65552:intron | 25.0% |
! | TACTTTATTCAGCGATAATT+TGG | + | chr6.4:5670966-5670985 | MS.gene65552:intron | 25.0% |
! | TATCCTGAAATTTAAATGAG+AGG | - | chr6.4:5671455-5671474 | None:intergenic | 25.0% |
! | TCAACTGTAAACTCAAAATT+TGG | + | chr6.4:5669997-5670016 | MS.gene65552:intron | 25.0% |
! | TGTCTCTATTAATTGACATT+AGG | + | chr6.4:5672201-5672220 | MS.gene65552:intron | 25.0% |
! | TTAAGTCGTTTATCCAAATA+GGG | + | chr6.4:5671332-5671351 | MS.gene65552:intron | 25.0% |
! | TTATCCGGATATCTTAAATT+CGG | - | chr6.4:5669501-5669520 | None:intergenic | 25.0% |
! | TTCTACATTATCACTTCAAA+AGG | - | chr6.4:5670434-5670453 | None:intergenic | 25.0% |
!! | AGGTTTCATTTTGGATATAA+TGG | + | chr6.4:5670908-5670927 | MS.gene65552:intron | 25.0% |
!! | AGTTCTTAGTTTAACTTACT+TGG | - | chr6.4:5670231-5670250 | None:intergenic | 25.0% |
!! | ATTCTAGCTACTAATTTATC+CGG | - | chr6.4:5669516-5669535 | None:intergenic | 25.0% |
!! | GTTACTAAACAAGTCAATTT+TGG | + | chr6.4:5669954-5669973 | MS.gene65552:intron | 25.0% |
!! | TCAAAGTATATAACTTTTCC+GGG | + | chr6.4:5672297-5672316 | MS.gene65552:intron | 25.0% |
!! | TGTGAATTGATAGAGTATTT+GGG | + | chr6.4:5669445-5669464 | MS.gene65552:intron | 25.0% |
!! | TTTACCGAATTTAAGATATC+CGG | + | chr6.4:5669494-5669513 | MS.gene65552:intron | 25.0% |
!! | TTTGGTAAAAGGTTTCATTT+TGG | + | chr6.4:5670899-5670918 | MS.gene65552:intron | 25.0% |
!!! | TGCGATATTATTATTTTGAC+AGG | + | chr6.4:5670863-5670882 | MS.gene65552:CDS | 25.0% |
!!! | TTCACTAATTTTAGGTTCTT+CGG | + | chr6.4:5672662-5672681 | MS.gene65552:intron | 25.0% |
AATTTGAATGGAACAGAGAT+TGG | - | chr6.4:5669248-5669267 | None:intergenic | 30.0% | |
ACTAAGGAAAGACATATTGA+AGG | - | chr6.4:5671765-5671784 | None:intergenic | 30.0% | |
ACTCTAGTATAGTAACTCTA+AGG | - | chr6.4:5670176-5670195 | None:intergenic | 30.0% | |
ACTTACTTGGTCTAAACTAA+AGG | - | chr6.4:5670218-5670237 | None:intergenic | 30.0% | |
AGAAGCTACTTCTGTAAAAA+AGG | - | chr6.4:5672383-5672402 | None:intergenic | 30.0% | |
AGCAATTCTTAGCTATGATT+TGG | + | chr6.4:5672474-5672493 | MS.gene65552:intron | 30.0% | |
AGGTTTAGATTTACTGTAAG+TGG | - | chr6.4:5672171-5672190 | None:intergenic | 30.0% | |
ATGAAGAAGATGAAGATTGA+AGG | - | chr6.4:5669208-5669227 | None:intergenic | 30.0% | |
ATTTGAATGGAACAGAGATT+GGG | - | chr6.4:5669247-5669266 | None:intergenic | 30.0% | |
CTACCTGATTTATTTGATCA+AGG | + | chr6.4:5670790-5670809 | MS.gene65552:intron | 30.0% | |
CTCGTCTATTTACATTTAGA+GGG | - | chr6.4:5670404-5670423 | None:intergenic | 30.0% | |
CTCTAGTATAGTAACTCTAA+GGG | - | chr6.4:5670175-5670194 | None:intergenic | 30.0% | |
CTTACCAATCAAAAATATGG+AGG | - | chr6.4:5670714-5670733 | None:intergenic | 30.0% | |
CTTACTTGGTCTAAACTAAA+GGG | - | chr6.4:5670217-5670236 | None:intergenic | 30.0% | |
GAGAGTTACATATACATACA+TGG | - | chr6.4:5669323-5669342 | None:intergenic | 30.0% | |
GTAAAATATGTAAAACAGCC+CGG | - | chr6.4:5672318-5672337 | None:intergenic | 30.0% | |
GTTCCTCTCATTTAAATTTC+AGG | + | chr6.4:5671449-5671468 | MS.gene65552:intron | 30.0% | |
TAACAGTAAGGAATTAACCT+CGG | - | chr6.4:5672119-5672138 | None:intergenic | 30.0% | |
TACATATACATACATGGAAC+AGG | - | chr6.4:5669317-5669336 | None:intergenic | 30.0% | |
TCTAGTATAGTAACTCTAAG+GGG | - | chr6.4:5670174-5670193 | None:intergenic | 30.0% | |
TCTATTTACATTTAGAGGGT+AGG | - | chr6.4:5670400-5670419 | None:intergenic | 30.0% | |
TCTGTTCATTCTTTGGTAAA+AGG | + | chr6.4:5670888-5670907 | MS.gene65552:intron | 30.0% | |
TGAAGAAGATGAAGATTGAA+GGG | - | chr6.4:5669207-5669226 | None:intergenic | 30.0% | |
TTAGAAGAGATCAGTTATGT+AGG | - | chr6.4:5671413-5671432 | None:intergenic | 30.0% | |
TTAGCATTGTTACTAACTCT+TGG | + | chr6.4:5672564-5672583 | MS.gene65552:intron | 30.0% | |
TTCAAAAAGACTGAATCTCA+GGG | - | chr6.4:5670616-5670635 | None:intergenic | 30.0% | |
TTCACCTCACAATCATAATT+GGG | + | chr6.4:5670551-5670570 | MS.gene65552:intron | 30.0% | |
TTTAGATTTACTGTAAGTGG+AGG | - | chr6.4:5672168-5672187 | None:intergenic | 30.0% | |
TTTATTCAGCGATAATTTGG+TGG | + | chr6.4:5670969-5670988 | MS.gene65552:intron | 30.0% | |
TTTCAAAAAGACTGAATCTC+AGG | - | chr6.4:5670617-5670636 | None:intergenic | 30.0% | |
! | CATACACAATCAATGGTTTT+CGG | + | chr6.4:5670746-5670765 | MS.gene65552:intron | 30.0% |
! | CGATTGAACTTTTAACAGTA+AGG | - | chr6.4:5672131-5672150 | None:intergenic | 30.0% |
! | GAAAGATCAAACCTTCATTT+TGG | + | chr6.4:5671678-5671697 | MS.gene65552:intron | 30.0% |
! | GCTGATTTCAAAAACTATCT+TGG | - | chr6.4:5671229-5671248 | None:intergenic | 30.0% |
! | GTGTGAATTGATAGAGTATT+TGG | + | chr6.4:5669444-5669463 | MS.gene65552:intron | 30.0% |
! | TTTGTTGACTAAACTGACTA+AGG | - | chr6.4:5671813-5671832 | None:intergenic | 30.0% |
!! | TATAGTGGACAAGTTTATAG+CGG | + | chr6.4:5669736-5669755 | MS.gene65552:intron | 30.0% |
!!! | TCACTAATTTTAGGTTCTTC+GGG | + | chr6.4:5672663-5672682 | MS.gene65552:intron | 30.0% |
AACAGTAAGGAATTAACCTC+GGG | - | chr6.4:5672118-5672137 | None:intergenic | 35.0% | |
AACTAAAGGGATCAAATCTG+TGG | - | chr6.4:5670204-5670223 | None:intergenic | 35.0% | |
AAGCTCTCTTAAAACCAATC+TGG | + | chr6.4:5670819-5670838 | MS.gene65552:CDS | 35.0% | |
AAGTAATTGTGTGACCGTTT+GGG | + | chr6.4:5671134-5671153 | MS.gene65552:intron | 35.0% | |
ACACCGTTTGACACATTTAA+GGG | + | chr6.4:5671891-5671910 | MS.gene65552:intron | 35.0% | |
ACACGCTCTTAAACTGTTAT+AGG | + | chr6.4:5671972-5671991 | MS.gene65552:intron | 35.0% | |
ACAGGTATCTGTTCATTCTT+TGG | + | chr6.4:5670881-5670900 | MS.gene65552:intron | 35.0% | |
ACATTCAAGGACCAAAATGA+AGG | - | chr6.4:5671692-5671711 | None:intergenic | 35.0% | |
ACGTGTAGAATTACGATTGT+TGG | - | chr6.4:5670144-5670163 | None:intergenic | 35.0% | |
AGCTCTCTTAAAACCAATCT+GGG | + | chr6.4:5670820-5670839 | MS.gene65552:CDS | 35.0% | |
ATAAGCTATTTGAGGACTTG+AGG | - | chr6.4:5672349-5672368 | None:intergenic | 35.0% | |
ATAAGTTATCCCAACCCAAA+CGG | - | chr6.4:5671151-5671170 | None:intergenic | 35.0% | |
ATGTCTTTCCTTAGTGAGTT+TGG | + | chr6.4:5671770-5671789 | MS.gene65552:intron | 35.0% | |
ATGTTGAAGCAGATGAACAT+CGG | + | chr6.4:5669149-5669168 | MS.gene65552:CDS | 35.0% | |
CAAACCCAATTATGATTGTG+AGG | - | chr6.4:5670558-5670577 | None:intergenic | 35.0% | |
CACGCTCTTAAACTGTTATA+GGG | + | chr6.4:5671973-5671992 | MS.gene65552:intron | 35.0% | |
CACTAACACAGATCAGAAAT+TGG | + | chr6.4:5670046-5670065 | MS.gene65552:intron | 35.0% | |
CAGTTATGTAGGAATAGGAT+AGG | - | chr6.4:5671402-5671421 | None:intergenic | 35.0% | |
CATTGTTACTAACTCTTGGA+TGG | + | chr6.4:5672568-5672587 | MS.gene65552:intron | 35.0% | |
CTTAGTCACTGAAGCTAAAT+GGG | - | chr6.4:5670480-5670499 | None:intergenic | 35.0% | |
GAAGCAGATATCTCAAATGA+AGG | - | chr6.4:5672085-5672104 | None:intergenic | 35.0% | |
GAGATCAGTTATGTAGGAAT+AGG | - | chr6.4:5671407-5671426 | None:intergenic | 35.0% | |
GCTCGTCTATTTACATTTAG+AGG | - | chr6.4:5670405-5670424 | None:intergenic | 35.0% | |
GTTCACCTCACAATCATAAT+TGG | + | chr6.4:5670550-5670569 | MS.gene65552:intron | 35.0% | |
TAAGTAATTGTGTGACCGTT+TGG | + | chr6.4:5671133-5671152 | MS.gene65552:intron | 35.0% | |
TAGCAAAACTGATGCTTGTA+TGG | - | chr6.4:5672537-5672556 | None:intergenic | 35.0% | |
TCACATAAGTCAATCCAAAC+AGG | - | chr6.4:5671098-5671117 | None:intergenic | 35.0% | |
TGTCCCTTAAATGTGTCAAA+CGG | - | chr6.4:5671897-5671916 | None:intergenic | 35.0% | |
! | CAAATGAAGGAAATTGACTC+TGG | - | chr6.4:5672072-5672091 | None:intergenic | 35.0% |
! | GCTGATAAACTAGTCTATAG+TGG | + | chr6.4:5669721-5669740 | MS.gene65552:intron | 35.0% |
! | TCATTTGAGATATCTGCTTC+AGG | + | chr6.4:5672085-5672104 | MS.gene65552:CDS | 35.0% |
!! | AATTTGGTGGAAGAAGCATT+AGG | + | chr6.4:5670982-5671001 | MS.gene65552:CDS | 35.0% |
!! | CATTAGGTAATGGATGAACT+CGG | + | chr6.4:5672217-5672236 | MS.gene65552:intron | 35.0% |
!!! | AGGAAATTGACTCTGGTTTT+CGG | - | chr6.4:5672065-5672084 | None:intergenic | 35.0% |
AATGGAACAGAGATTGGGAA+TGG | - | chr6.4:5669242-5669261 | None:intergenic | 40.0% | |
ACAGAAGTAGCTTCTCAGTT+GGG | + | chr6.4:5672388-5672407 | MS.gene65552:intron | 40.0% | |
ACAGTAAGGAATTAACCTCG+GGG | - | chr6.4:5672117-5672136 | None:intergenic | 40.0% | |
ACATGAAGTGAGACCCTATT+TGG | - | chr6.4:5671348-5671367 | None:intergenic | 40.0% | |
ACTTAAGCAATTGTCGTCCA+TGG | + | chr6.4:5671562-5671581 | MS.gene65552:CDS | 40.0% | |
AGAATGTAATCCCATGTCTC+AGG | - | chr6.4:5672003-5672022 | None:intergenic | 40.0% | |
ATATATCCCCTGAGCTGAAA+GGG | + | chr6.4:5670687-5670706 | MS.gene65552:CDS | 40.0% | |
CCTTAGTCACTGAAGCTAAA+TGG | - | chr6.4:5670481-5670500 | None:intergenic | 40.0% | |
CGACATTACAACAGAAGACA+TGG | + | chr6.4:5672426-5672445 | MS.gene65552:CDS | 40.0% | |
CTGCTGCTACTGAATTTGAA+TGG | - | chr6.4:5669260-5669279 | None:intergenic | 40.0% | |
CTTAAGCAATTGTCGTCCAT+GGG | + | chr6.4:5671563-5671582 | MS.gene65552:CDS | 40.0% | |
GACACCGTTTGACACATTTA+AGG | + | chr6.4:5671890-5671909 | MS.gene65552:intron | 40.0% | |
GACCAGAGTAAAGAAGATGA+TGG | + | chr6.4:5672699-5672718 | MS.gene65552:CDS | 40.0% | |
TACAACAGAAGACATGGCTT+TGG | + | chr6.4:5672432-5672451 | MS.gene65552:CDS | 40.0% | |
TACAGAAGTAGCTTCTCAGT+TGG | + | chr6.4:5672387-5672406 | MS.gene65552:intron | 40.0% | |
TGACTAAGGAAAGACACCTA+CGG | - | chr6.4:5671799-5671818 | None:intergenic | 40.0% | |
TGAGACATGGGATTACATTC+TGG | + | chr6.4:5672002-5672021 | MS.gene65552:CDS | 40.0% | |
TGCCATCATCTTCTTTACTC+TGG | - | chr6.4:5672704-5672723 | None:intergenic | 40.0% | |
TGTTACGGTACACATGCATT+AGG | + | chr6.4:5669411-5669430 | MS.gene65552:intron | 40.0% | |
TTGAAGGGATGAACAACTGA+CGG | - | chr6.4:5669192-5669211 | None:intergenic | 40.0% | |
! | ACACTTTCGACCAAAAGTGT+CGG | + | chr6.4:5670071-5670090 | MS.gene65552:intron | 40.0% |
! | AGATTTGCCTTTAGAGACTG+TGG | + | chr6.4:5672027-5672046 | MS.gene65552:CDS | 40.0% |
! | CCATTTAGCTTCAGTGACTA+AGG | + | chr6.4:5670478-5670497 | MS.gene65552:intron | 40.0% |
! | CTAGTAGTTTGTGCTGGAAA+TGG | + | chr6.4:5671590-5671609 | MS.gene65552:CDS | 40.0% |
!! | CAAGTTTATAGCGGATAGAC+TGG | + | chr6.4:5669745-5669764 | MS.gene65552:intron | 40.0% |
!! | GGGTCCTCCATATTTTTGAT+TGG | + | chr6.4:5670707-5670726 | MS.gene65552:CDS | 40.0% |
!! | GTTTGGGTTGGGATAACTTA+TGG | + | chr6.4:5671150-5671169 | MS.gene65552:intron | 40.0% |
!!! | TCAATGGTTTTCGGTGTTTC+TGG | + | chr6.4:5670755-5670774 | MS.gene65552:intron | 40.0% |
AAAGAAGCTGTATGCTCGTG+AGG | + | chr6.4:5669923-5669942 | MS.gene65552:intron | 45.0% | |
AACCAATCTGGGAAAACTGC+TGG | + | chr6.4:5670831-5670850 | MS.gene65552:CDS | 45.0% | |
AATTGTGTGACCGTTTGGGT+TGG | + | chr6.4:5671138-5671157 | MS.gene65552:intron | 45.0% | |
ACAAACTACTAGTCGACCCA+TGG | - | chr6.4:5671582-5671601 | None:intergenic | 45.0% | |
AGACTTACTTAGGGCCTGTT+TGG | + | chr6.4:5671081-5671100 | MS.gene65552:intron | 45.0% | |
AGTGACTAAGGTTTCTGCGA+CGG | + | chr6.4:5670490-5670509 | MS.gene65552:CDS | 45.0% | |
ATCATGTGTCAGTGTCGTGT+AGG | + | chr6.4:5669671-5669690 | MS.gene65552:intron | 45.0% | |
CAGAGATTGGGAATGGAAAG+TGG | - | chr6.4:5669235-5669254 | None:intergenic | 45.0% | |
CGTCTCATCACTCTCTTTGA+AGG | - | chr6.4:5671028-5671047 | None:intergenic | 45.0% | |
GACAGCGCTTAACACATTCA+AGG | - | chr6.4:5671705-5671724 | None:intergenic | 45.0% | |
GATATATCCCCTGAGCTGAA+AGG | + | chr6.4:5670686-5670705 | MS.gene65552:CDS | 45.0% | |
GGATTTATCTCTTGCGGTGA+AGG | + | chr6.4:5670511-5670530 | MS.gene65552:CDS | 45.0% | |
TACGGAGACCAAACTCACTA+AGG | - | chr6.4:5671781-5671800 | None:intergenic | 45.0% | |
TCATGTGTCAGTGTCGTGTA+GGG | + | chr6.4:5669672-5669691 | MS.gene65552:intron | 45.0% | |
TCTGTGTTAGTGCTACACCT+AGG | - | chr6.4:5670038-5670057 | None:intergenic | 45.0% | |
TGAAGGGATGAACAACTGAC+GGG | - | chr6.4:5669191-5669210 | None:intergenic | 45.0% | |
TTAGTGAGTTTGGTCTCCGT+AGG | + | chr6.4:5671780-5671799 | MS.gene65552:intron | 45.0% | |
TTGAGGACTTGAGGCATACA+TGG | - | chr6.4:5672340-5672359 | None:intergenic | 45.0% | |
! | ATTGTGTGACCGTTTGGGTT+GGG | + | chr6.4:5671139-5671158 | MS.gene65552:intron | 45.0% |
! | TGCGACGGATTTATCTCTTG+CGG | + | chr6.4:5670505-5670524 | MS.gene65552:CDS | 45.0% |
!! | AACAGAAGACATGGCTTTGG+AGG | + | chr6.4:5672435-5672454 | MS.gene65552:CDS | 45.0% |
!! | TTGGTGGAAGAAGCATTAGG+TGG | + | chr6.4:5670985-5671004 | MS.gene65552:CDS | 45.0% |
GACGAGCTTCTATGACTCTG+AGG | + | chr6.4:5671044-5671063 | MS.gene65552:CDS | 50.0% | |
GTATGCTCGTGAGGAGAAGT+TGG | + | chr6.4:5669932-5669951 | MS.gene65552:intron | 50.0% | |
TCCCTAGCCACAGTCTCTAA+AGG | - | chr6.4:5672037-5672056 | None:intergenic | 50.0% | |
TGCTACACCTAGGCTCTGTT+TGG | - | chr6.4:5670028-5670047 | None:intergenic | 50.0% | |
! | AGCCAGCAGTTTTCCCAGAT+TGG | - | chr6.4:5670836-5670855 | None:intergenic | 50.0% |
! | GCCTTTAGAGACTGTGGCTA+GGG | + | chr6.4:5672033-5672052 | MS.gene65552:CDS | 50.0% |
! | GGTCGACTAGTAGTTTGTGC+TGG | + | chr6.4:5671584-5671603 | MS.gene65552:CDS | 50.0% |
! | TGCCTTTAGAGACTGTGGCT+AGG | + | chr6.4:5672032-5672051 | MS.gene65552:CDS | 50.0% |
!! | GTGTCGTGTAGGGCTTTGTT+TGG | + | chr6.4:5669682-5669701 | MS.gene65552:intron | 50.0% |
!!! | CACAGTAGCACCGACACTTT+TGG | - | chr6.4:5670084-5670103 | None:intergenic | 50.0% |
ATGGAGGACCCTTTCAGCTC+AGG | - | chr6.4:5670698-5670717 | None:intergenic | 55.0% | |
CACCTAGGCTCTGTTTGGCA+AGG | - | chr6.4:5670023-5670042 | None:intergenic | 55.0% | |
CGACGTGCAGTGTTGTGTCA+AGG | - | chr6.4:5669609-5669628 | None:intergenic | 55.0% | |
GGGATGAACAACTGACGGGA+AGG | - | chr6.4:5669187-5669206 | None:intergenic | 55.0% | |
TGCTTCAGGATCTTACCCCG+AGG | + | chr6.4:5672099-5672118 | MS.gene65552:CDS | 55.0% | |
TGGAGGACCCTTTCAGCTCA+GGG | - | chr6.4:5670697-5670716 | None:intergenic | 55.0% | |
! | ATAGGGCGCTCCTGAGACAT+GGG | + | chr6.4:5671990-5672009 | MS.gene65552:intron | 55.0% |
! | TATAGGGCGCTCCTGAGACA+TGG | + | chr6.4:5671989-5672008 | MS.gene65552:intron | 55.0% |
GGAGGACCCTTTCAGCTCAG+GGG | - | chr6.4:5670696-5670715 | None:intergenic | 60.0% | |
GGCCTTGCCAAACAGAGCCT+AGG | + | chr6.4:5670018-5670037 | MS.gene65552:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 5669128 | 5672744 | 5669128 | ID=MS.gene65552 |
chr6.4 | mRNA | 5669128 | 5672744 | 5669128 | ID=MS.gene65552.t1;Parent=MS.gene65552 |
chr6.4 | exon | 5669128 | 5669323 | 5669128 | ID=MS.gene65552.t1.exon1;Parent=MS.gene65552.t1 |
chr6.4 | CDS | 5669128 | 5669323 | 5669128 | ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1 |
chr6.4 | exon | 5670486 | 5670532 | 5670486 | ID=MS.gene65552.t1.exon2;Parent=MS.gene65552.t1 |
chr6.4 | CDS | 5670486 | 5670532 | 5670486 | ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1 |
chr6.4 | exon | 5670674 | 5670728 | 5670674 | ID=MS.gene65552.t1.exon3;Parent=MS.gene65552.t1 |
chr6.4 | CDS | 5670674 | 5670728 | 5670674 | ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1 |
chr6.4 | exon | 5670812 | 5670884 | 5670812 | ID=MS.gene65552.t1.exon4;Parent=MS.gene65552.t1 |
chr6.4 | CDS | 5670812 | 5670884 | 5670812 | ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1 |
chr6.4 | exon | 5670978 | 5671065 | 5670978 | ID=MS.gene65552.t1.exon5;Parent=MS.gene65552.t1 |
chr6.4 | CDS | 5670978 | 5671065 | 5670978 | ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1 |
chr6.4 | exon | 5671554 | 5671636 | 5671554 | ID=MS.gene65552.t1.exon6;Parent=MS.gene65552.t1 |
chr6.4 | CDS | 5671554 | 5671636 | 5671554 | ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1 |
chr6.4 | exon | 5671994 | 5672120 | 5671994 | ID=MS.gene65552.t1.exon7;Parent=MS.gene65552.t1 |
chr6.4 | CDS | 5671994 | 5672120 | 5671994 | ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1 |
chr6.4 | exon | 5672223 | 5672301 | 5672223 | ID=MS.gene65552.t1.exon8;Parent=MS.gene65552.t1 |
chr6.4 | CDS | 5672223 | 5672301 | 5672223 | ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1 |
chr6.4 | exon | 5672392 | 5672456 | 5672392 | ID=MS.gene65552.t1.exon9;Parent=MS.gene65552.t1 |
chr6.4 | CDS | 5672392 | 5672456 | 5672392 | ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1 |
chr6.4 | exon | 5672676 | 5672744 | 5672676 | ID=MS.gene65552.t1.exon10;Parent=MS.gene65552.t1 |
chr6.4 | CDS | 5672676 | 5672744 | 5672676 | ID=cds.MS.gene65552.t1;Parent=MS.gene65552.t1 |
Gene Sequence |
Protein sequence |