Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050231.t1 | XP_013448435.1 | 98.6 | 436 | 6 | 0 | 1 | 436 | 1 | 436 | 2.40E-244 | 854.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050231.t1 | G0S8F1 | 26.6 | 297 | 212 | 2 | 140 | 436 | 64 | 354 | 5.1e-30 | 133.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050231.t1 | A0A072TYG1 | 98.6 | 436 | 6 | 0 | 1 | 436 | 1 | 436 | 1.7e-244 | 854.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene050231 | 0.827658 | 1.39E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene050301 | 0.825115 | 5.59E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene052253 | 0.801133 | 1.04E-48 | -1.69E-46 |
| MS.gene050231 | MS.gene052310 | 0.800005 | 1.77E-48 | -1.69E-46 |
| MS.gene050231 | MS.gene052485 | 0.809864 | 1.53E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene053836 | 0.812903 | 3.35E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene055422 | 0.824573 | 7.50E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene055428 | 0.823002 | 1.75E-53 | -1.69E-46 |
| MS.gene050231 | MS.gene057121 | 0.805578 | 1.25E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene057245 | 0.802782 | 4.77E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene058002 | 0.816099 | 6.58E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene05811 | 0.814791 | 1.29E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene058660 | 0.816912 | 4.33E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene05907 | 0.815401 | 9.42E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene059141 | 0.842568 | 2.39E-58 | -1.69E-46 |
| MS.gene050231 | MS.gene05984 | 0.815659 | 8.25E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene061788 | 0.801824 | 7.50E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene062767 | 0.836047 | 1.18E-56 | -1.69E-46 |
| MS.gene050231 | MS.gene063074 | 0.828162 | 1.05E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene063085 | 0.815122 | 1.09E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene063114 | 0.824471 | 7.93E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene06407 | 0.805613 | 1.23E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene06470 | 0.850647 | 1.48E-60 | -1.69E-46 |
| MS.gene050231 | MS.gene065042 | 0.807264 | 5.50E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene066388 | 0.824841 | 6.49E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene06691 | 0.807025 | 6.18E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene067414 | 0.801423 | 9.07E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene06821 | 0.810993 | 8.74E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene068905 | 0.807658 | 4.54E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene06900 | 0.805241 | 1.47E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene069525 | 0.818625 | 1.78E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene069859 | 0.810952 | 8.92E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene071062 | 0.806015 | 1.01E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene07366 | 0.815946 | 7.12E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene07596 | 0.825844 | 3.76E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene07619 | 0.815692 | 8.12E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene07862 | 0.800288 | 1.55E-48 | -1.69E-46 |
| MS.gene050231 | MS.gene20612 | 0.808397 | 3.16E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene20910 | 0.815974 | 7.02E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene21716 | 0.809843 | 1.55E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene22295 | 0.803869 | 2.84E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene22296 | 0.815086 | 1.11E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene22985 | 0.818139 | 2.29E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene23002 | 0.807048 | 6.11E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene24695 | 0.832242 | 1.06E-55 | -1.69E-46 |
| MS.gene050231 | MS.gene24730 | 0.818209 | 2.21E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene26265 | 0.804083 | 2.56E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene26340 | 0.802933 | 4.43E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene28998 | 0.817436 | 3.30E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene29105 | 0.836726 | 7.90E-57 | -1.69E-46 |
| MS.gene050231 | MS.gene30306 | 0.808079 | 3.69E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene31030 | 0.844115 | 9.23E-59 | -1.69E-46 |
| MS.gene050231 | MS.gene31117 | 0.817613 | 3.01E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene34272 | 0.811356 | 7.29E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene36648 | 0.815291 | 9.97E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene39051 | 0.847487 | 1.12E-59 | -1.69E-46 |
| MS.gene050231 | MS.gene39334 | 0.819723 | 1.00E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene41796 | 0.828618 | 8.13E-55 | -1.69E-46 |
| MS.gene050231 | MS.gene42533 | 0.847163 | 1.38E-59 | -1.69E-46 |
| MS.gene050231 | MS.gene42992 | 0.842958 | 1.88E-58 | -1.69E-46 |
| MS.gene050231 | MS.gene43403 | 0.843937 | 1.03E-58 | -1.69E-46 |
| MS.gene050231 | MS.gene43917 | 0.811424 | 7.05E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene43919 | 0.839909 | 1.19E-57 | -1.69E-46 |
| MS.gene050231 | MS.gene43933 | 0.843517 | 1.33E-58 | -1.69E-46 |
| MS.gene050231 | MS.gene44398 | 0.824365 | 8.40E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene44845 | 0.805104 | 1.57E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene44915 | 0.834996 | 2.17E-56 | -1.69E-46 |
| MS.gene050231 | MS.gene45108 | 0.813436 | 2.56E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene45411 | 0.803425 | 3.51E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene45532 | 0.809845 | 1.55E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene46352 | 0.816329 | 5.85E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene47398 | 0.806944 | 6.43E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene47758 | 0.811615 | 6.41E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene47869 | 0.807618 | 4.63E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene50644 | 0.814123 | 1.81E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene51070 | 0.806564 | 7.74E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene52600 | 0.835237 | 1.89E-56 | -1.69E-46 |
| MS.gene050231 | MS.gene55321 | 0.82051 | 6.60E-53 | -1.69E-46 |
| MS.gene050231 | MS.gene56089 | 0.830399 | 3.00E-55 | -1.69E-46 |
| MS.gene050231 | MS.gene57121 | 0.804242 | 2.37E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene57299 | 0.804548 | 2.05E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene58210 | 0.819684 | 1.02E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene58501 | 0.801481 | 8.82E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene59218 | -0.820119 | 8.12E-53 | -1.69E-46 |
| MS.gene050231 | MS.gene59730 | 0.825082 | 5.69E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene60391 | 0.811574 | 6.54E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene60737 | 0.814567 | 1.44E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene60813 | 0.813265 | 2.79E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene60909 | 0.803242 | 3.83E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene61507 | 0.802274 | 6.06E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene63820 | 0.826199 | 3.09E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene64621 | 0.80946 | 1.87E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene65552 | 0.800578 | 1.35E-48 | -1.69E-46 |
| MS.gene050231 | MS.gene65665 | 0.808216 | 3.45E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene65851 | 0.824053 | 9.94E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene66332 | 0.801889 | 7.28E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene66847 | 0.818749 | 1.67E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene67204 | 0.819504 | 1.12E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene68315 | 0.826616 | 2.46E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene68618 | 0.834658 | 2.64E-56 | -1.69E-46 |
| MS.gene050231 | MS.gene68723 | 0.80206 | 6.71E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene68734 | 0.810975 | 8.82E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene68907 | 0.829731 | 4.37E-55 | -1.69E-46 |
| MS.gene050231 | MS.gene69001 | 0.808355 | 3.23E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene69862 | 0.825462 | 4.63E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene71456 | 0.817084 | 3.96E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene76043 | -0.822317 | 2.53E-53 | -1.69E-46 |
| MS.gene050231 | MS.gene76214 | 0.812113 | 4.99E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene81435 | 0.83258 | 8.72E-56 | -1.69E-46 |
| MS.gene050231 | MS.gene81436 | 0.816538 | 5.25E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene82572 | 0.804618 | 1.98E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene82769 | 0.836256 | 1.04E-56 | -1.69E-46 |
| MS.gene050231 | MS.gene83053 | 0.801184 | 1.01E-48 | -1.69E-46 |
| MS.gene050231 | MS.gene84406 | 0.816913 | 4.33E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene85148 | 0.814303 | 1.65E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene85449 | 0.801299 | 9.61E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene86055 | 0.805717 | 1.17E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene86413 | 0.803845 | 2.87E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene86932 | 0.806891 | 6.60E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene87271 | 0.82566 | 4.15E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene89914 | 0.802906 | 4.49E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene90870 | 0.824568 | 7.52E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene91483 | 0.823762 | 1.16E-53 | -1.69E-46 |
| MS.gene050231 | MS.gene92773 | 0.803078 | 4.14E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene92871 | 0.836733 | 7.87E-57 | -1.69E-46 |
| MS.gene050231 | MS.gene93385 | 0.804434 | 2.16E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene94661 | 0.832032 | 1.19E-55 | -1.69E-46 |
| MS.gene050231 | MS.gene95123 | 0.819893 | 9.14E-53 | -1.69E-46 |
| MS.gene050231 | MS.gene95864 | 0.80113 | 1.04E-48 | -1.69E-46 |
| MS.gene050231 | MS.gene95885 | 0.819856 | 9.32E-53 | -1.69E-46 |
| MS.gene050231 | MS.gene96276 | 0.826833 | 2.18E-54 | -1.69E-46 |
| MS.gene050231 | MS.gene96945 | 0.815154 | 1.07E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene97940 | 0.802439 | 5.61E-49 | -1.69E-46 |
| MS.gene050231 | MS.gene99139 | 0.819 | 1.46E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene99165 | 0.835184 | 1.95E-56 | -1.69E-46 |
| MS.gene050231 | MS.gene99622 | 0.816085 | 6.63E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene99819 | 0.818403 | 2.00E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene99854 | 0.811814 | 5.80E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050231.t1 | MTR_7g450930 | 98.624 | 436 | 6 | 0 | 1 | 436 | 1 | 436 | 0.0 | 885 |
| MS.gene050231.t1 | MTR_7g450930 | 98.783 | 411 | 5 | 0 | 1 | 411 | 1 | 411 | 0.0 | 837 |
| MS.gene050231.t1 | MTR_7g450930 | 99.427 | 349 | 2 | 0 | 88 | 436 | 1 | 349 | 0.0 | 714 |
| MS.gene050231.t1 | MTR_8g018150 | 28.065 | 310 | 196 | 5 | 136 | 428 | 62 | 361 | 1.88e-30 | 124 |
| MS.gene050231.t1 | MTR_2g078050 | 28.025 | 314 | 183 | 7 | 136 | 432 | 62 | 349 | 8.48e-27 | 113 |
| MS.gene050231.t1 | MTR_2g078050 | 30.667 | 225 | 136 | 5 | 225 | 432 | 15 | 236 | 1.75e-24 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050231.t1 | AT1G80770 | 60.927 | 453 | 154 | 4 | 1 | 436 | 1 | 447 | 0.0 | 549 |
| MS.gene050231.t1 | AT1G80770 | 65.196 | 408 | 137 | 2 | 33 | 436 | 25 | 431 | 0.0 | 548 |
| MS.gene050231.t1 | AT1G80770 | 65.509 | 403 | 134 | 2 | 38 | 436 | 23 | 424 | 0.0 | 546 |
| MS.gene050231.t1 | AT1G80770 | 57.438 | 484 | 152 | 5 | 1 | 436 | 1 | 478 | 0.0 | 537 |
| MS.gene050231.t1 | AT1G80770 | 61.048 | 439 | 135 | 3 | 33 | 436 | 25 | 462 | 0.0 | 535 |
| MS.gene050231.t1 | AT1G80770 | 69.801 | 351 | 106 | 0 | 86 | 436 | 1 | 351 | 0.0 | 518 |
| MS.gene050231.t1 | AT1G50920 | 28.283 | 297 | 192 | 4 | 136 | 420 | 62 | 349 | 7.88e-31 | 125 |
| MS.gene050231.t1 | AT1G10300 | 28.814 | 295 | 187 | 6 | 136 | 416 | 91 | 376 | 1.87e-29 | 121 |
| MS.gene050231.t1 | AT1G10300 | 28.814 | 295 | 187 | 6 | 136 | 416 | 91 | 376 | 1.87e-29 | 121 |
| MS.gene050231.t1 | AT1G10300 | 28.814 | 295 | 187 | 6 | 136 | 416 | 62 | 347 | 2.52e-29 | 121 |
Find 99 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAGATGACAGAAATAATT+TGG | 0.185691 | 7.1:+53448205 | MS.gene050231:intron |
| TTGTATGTTCACGACCTTTC+AGG | 0.198145 | 7.1:+53448272 | MS.gene050231:CDS |
| GGCAATGCCTGTAATAAATT+TGG | 0.207955 | 7.1:+53446243 | MS.gene050231:CDS |
| GTGAAATTGAAGAAGGAAAA+TGG | 0.213923 | 7.1:-53442468 | None:intergenic |
| AAAGGTTTGATGGACATTTA+TGG | 0.216829 | 7.1:+53450674 | MS.gene050231:CDS |
| ACAGATTCAAATGTTCTAAA+TGG | 0.235225 | 7.1:-53444660 | None:intergenic |
| TCATGTCTCTTCAGCAGGCC+TGG | 0.268893 | 7.1:-53447400 | None:intergenic |
| GATGCCATCTATTGACATTC+TGG | 0.289556 | 7.1:+53444710 | MS.gene050231:CDS |
| CACAACAAGAGGAATTCTTA+TGG | 0.298220 | 7.1:+53447236 | MS.gene050231:CDS |
| AAAATAATTGAAGAGAGTTT+TGG | 0.305605 | 7.1:+53445963 | MS.gene050231:CDS |
| GGTGTTTCCAAATTTATTAC+AGG | 0.308018 | 7.1:-53446250 | None:intergenic |
| GAATGTAGGCAAATCTTCTT+TGG | 0.335232 | 7.1:+53446297 | MS.gene050231:CDS |
| TCTGGGGTCAGCACTGAAAA+AGG | 0.336487 | 7.1:+53444728 | MS.gene050231:CDS |
| CTCCATCGGGACCTGATTTA+CGG | 0.346680 | 7.1:-53450792 | None:intergenic |
| CATGTCTCTTCAGCAGGCCT+GGG | 0.368844 | 7.1:-53447399 | None:intergenic |
| AGGTAGATGGTTTGAGGAAG+AGG | 0.372406 | 7.1:+53445376 | MS.gene050231:CDS |
| AAGAAGATTTGCCTACATTC+GGG | 0.392966 | 7.1:-53446294 | None:intergenic |
| ACAACAAGAGGAATTCTTAT+GGG | 0.393660 | 7.1:+53447237 | MS.gene050231:CDS |
| ATTTACCTTTGGGGTTTGTA+AGG | 0.396806 | 7.1:-53442492 | None:intergenic |
| GAAATCAAAGAAAGGTTTGA+TGG | 0.401199 | 7.1:+53450664 | MS.gene050231:CDS |
| AAAGAAGATTTGCCTACATT+CGG | 0.415022 | 7.1:-53446295 | None:intergenic |
| TTTAGAACATTTGAATCTGT+TGG | 0.417378 | 7.1:+53444663 | MS.gene050231:CDS |
| TCAATAGATGGCATCACTAT+AGG | 0.418432 | 7.1:-53444702 | None:intergenic |
| TTGGTCCATGTACTCTCTAC+TGG | 0.422115 | 7.1:+53446316 | MS.gene050231:CDS |
| TGAAATTGAAGAAGGAAAAT+GGG | 0.431688 | 7.1:-53442467 | None:intergenic |
| CGTCCTCAACAGATCAGCTT+TGG | 0.434760 | 7.1:-53450710 | None:intergenic |
| TGGGACCTCACCTTCTGATC+AGG | 0.436948 | 7.1:+53448301 | MS.gene050231:CDS |
| CTGGAGAAGTACCGTAAATC+AGG | 0.439528 | 7.1:+53450781 | MS.gene050231:CDS |
| GACCCCAGAATGTCAATAGA+TGG | 0.446247 | 7.1:-53444714 | None:intergenic |
| ATGCCATCTATTGACATTCT+GGG | 0.451951 | 7.1:+53444711 | MS.gene050231:CDS |
| AGGAAGAGGGTAGTATCTGT+TGG | 0.458638 | 7.1:+53445390 | MS.gene050231:CDS |
| AGTTCTTATGAAGTTGCTAA+AGG | 0.462507 | 7.1:+53442650 | MS.gene050231:CDS |
| TGTATGTTCACGACCTTTCA+GGG | 0.467049 | 7.1:+53448273 | MS.gene050231:CDS |
| AAAATTGTTCAACAGGTGCT+AGG | 0.470751 | 7.1:+53445351 | MS.gene050231:intron |
| TACCGTCATGTCTCTTCAGC+AGG | 0.478642 | 7.1:-53447405 | None:intergenic |
| GTAAGGAGTGAAATTGAAGA+AGG | 0.481657 | 7.1:-53442475 | None:intergenic |
| TTCTCCACATACGTCCTCAA+TGG | 0.483689 | 7.1:-53445061 | None:intergenic |
| ACACCAACTCTCTGCCTAGT+TGG | 0.489352 | 7.1:+53446268 | MS.gene050231:CDS |
| TCAATAAGAGACCTTTCATA+AGG | 0.495639 | 7.1:-53445109 | None:intergenic |
| TCTCTTATTGAGCTGACACT+TGG | 0.498101 | 7.1:+53445121 | MS.gene050231:CDS |
| TATCTGCTCCAAAGTGGGAG+TGG | 0.498123 | 7.1:-53442684 | None:intergenic |
| TTACGTTCCCACTCCCACTT+TGG | 0.501562 | 7.1:+53442676 | MS.gene050231:CDS |
| ATTGAGCTGACACTTGGAGA+TGG | 0.506096 | 7.1:+53445127 | MS.gene050231:CDS |
| TGATCTCACACAGCATGAGC+TGG | 0.510177 | 7.1:+53450762 | MS.gene050231:CDS |
| CTACATTCGGGGCTCCAACT+AGG | 0.511057 | 7.1:-53446282 | None:intergenic |
| GGTAGATGGTTTGAGGAAGA+GGG | 0.514183 | 7.1:+53445377 | MS.gene050231:CDS |
| ACATGCTTCACTTTGCGCTA+AGG | 0.518181 | 7.1:+53445419 | MS.gene050231:CDS |
| CACGACCTTTCAGGGGAATG+TGG | 0.520127 | 7.1:+53448281 | MS.gene050231:CDS |
| TGGAGATGGGTATTATGAAA+AGG | 0.522681 | 7.1:+53445141 | MS.gene050231:CDS |
| AAGAATTCCTCTTGTTGTGA+AGG | 0.524407 | 7.1:-53447232 | None:intergenic |
| AACTATCCCTTCACAACAAG+AGG | 0.525070 | 7.1:+53447225 | MS.gene050231:CDS |
| TTGAGCTGACACTTGGAGAT+GGG | 0.526328 | 7.1:+53445128 | MS.gene050231:CDS |
| TAGGGCAGGTAGATGGTTTG+AGG | 0.528308 | 7.1:+53445370 | MS.gene050231:CDS |
| GATAAAAGAGAATAATATCA+TGG | 0.533268 | 7.1:+53442703 | MS.gene050231:CDS |
| AGATACATTAATAGCTCCAT+CGG | 0.535793 | 7.1:-53450806 | None:intergenic |
| ATCTGCTCCAAAGTGGGAGT+GGG | 0.536193 | 7.1:-53442683 | None:intergenic |
| CTAGTTGGAGCCCCGAATGT+AGG | 0.540827 | 7.1:+53446283 | MS.gene050231:CDS |
| CAGGTGCTAGGGCAGGTAGA+TGG | 0.542855 | 7.1:+53445363 | MS.gene050231:intron |
| AGGAGGATATCTGCAACAAA+AGG | 0.546311 | 7.1:+53444753 | MS.gene050231:CDS |
| TGTTCAACAGGTGCTAGGGC+AGG | 0.547074 | 7.1:+53445356 | MS.gene050231:intron |
| GCTTGCCAGTAGAGAGTACA+TGG | 0.547980 | 7.1:-53446321 | None:intergenic |
| AGAATTCCTCTTGTTGTGAA+GGG | 0.550811 | 7.1:-53447231 | None:intergenic |
| AGGAACTTGCTGTTCCATTG+AGG | 0.552433 | 7.1:+53445047 | MS.gene050231:intron |
| TGTTAACCTGAAACTTCTGA+TGG | 0.556557 | 7.1:-53447275 | None:intergenic |
| GAGGGTAGTATCTGTTGGAA+AGG | 0.557463 | 7.1:+53445395 | MS.gene050231:CDS |
| TATACAAAGAAATCAAAGAA+AGG | 0.558797 | 7.1:+53450656 | MS.gene050231:CDS |
| AAATTGTTCAACAGGTGCTA+GGG | 0.565816 | 7.1:+53445352 | MS.gene050231:intron |
| GAGACCTTTCATAAGGATGA+AGG | 0.566289 | 7.1:-53445102 | None:intergenic |
| TTTGACAAAGCGAGAAGCAG+AGG | 0.567198 | 7.1:+53445844 | MS.gene050231:CDS |
| TCTTCTGTTGCATATATCAC+AGG | 0.570734 | 7.1:-53450736 | None:intergenic |
| CACACCTTCATCCTTATGAA+AGG | 0.582707 | 7.1:+53445098 | MS.gene050231:CDS |
| TCTCCAAAGCTGATCTGTTG+AGG | 0.584385 | 7.1:+53450707 | MS.gene050231:CDS |
| AGGTCCCACATTCCCCTGAA+AGG | 0.587812 | 7.1:-53448286 | None:intergenic |
| TACCGTAAATCAGGTCCCGA+TGG | 0.588439 | 7.1:+53450790 | MS.gene050231:CDS |
| TAGAAGCACACCTGATCAGA+AGG | 0.592069 | 7.1:-53448311 | None:intergenic |
| ACGACCTTTCAGGGGAATGT+GGG | 0.594559 | 7.1:+53448282 | MS.gene050231:CDS |
| TGAACATACAAAACTGCTGT+TGG | 0.598167 | 7.1:-53448260 | None:intergenic |
| GATAAATGTTTCAGACTCTG+AGG | 0.603580 | 7.1:+53446221 | MS.gene050231:intron |
| GATACATTAATAGCTCCATC+GGG | 0.610936 | 7.1:-53450805 | None:intergenic |
| TCGGAGGAAATTTACCTTTG+GGG | 0.610998 | 7.1:-53442501 | None:intergenic |
| CGATTTGTTAAATATAGCGA+AGG | 0.611431 | 7.1:+53446007 | MS.gene050231:CDS |
| TGTTCCATTGAGGACGTATG+TGG | 0.612795 | 7.1:+53445057 | MS.gene050231:CDS |
| CTGCTGTTGGTAGATATGAA+AGG | 0.617147 | 7.1:-53448247 | None:intergenic |
| TGCCATCTATTGACATTCTG+GGG | 0.621381 | 7.1:+53444712 | MS.gene050231:CDS |
| GTATCTGTGACAACAGAGGA+AGG | 0.627008 | 7.1:+53450823 | MS.gene050231:CDS |
| AGAAGATTTGCCTACATTCG+GGG | 0.634945 | 7.1:-53446293 | None:intergenic |
| ATAAATGTTTCAGACTCTGA+GGG | 0.637253 | 7.1:+53446222 | MS.gene050231:intron |
| CTCTTACAGAAGCATAAGTG+TGG | 0.640700 | 7.1:-53442617 | None:intergenic |
| ATGTCTCTTCAGCAGGCCTG+GGG | 0.642348 | 7.1:-53447398 | None:intergenic |
| TCACTCCTTACAAACCCCAA+AGG | 0.644873 | 7.1:+53442487 | MS.gene050231:CDS |
| GCTCCAACTAGGCAGAGAGT+TGG | 0.649107 | 7.1:-53446271 | None:intergenic |
| GTATGTTCACGACCTTTCAG+GGG | 0.650446 | 7.1:+53448274 | MS.gene050231:CDS |
| GCACACCTGATCAGAAGGTG+AGG | 0.652956 | 7.1:-53448306 | None:intergenic |
| TTGTAGGTAACGGATACCCC+AGG | 0.653392 | 7.1:+53447382 | MS.gene050231:intron |
| AGCAGAGGAAAGATTGACCG+AGG | 0.653647 | 7.1:+53445859 | MS.gene050231:CDS |
| AACAGAGGAAGGAATACATG+AGG | 0.672547 | 7.1:+53450834 | MS.gene050231:CDS |
| GGCCTGCTGAAGAGACATGA+CGG | 0.673056 | 7.1:+53447403 | MS.gene050231:CDS |
| TAATGTATCTGTGACAACAG+AGG | 0.673897 | 7.1:+53450819 | MS.gene050231:CDS |
| ACTCTCTACTGGCAAGCCTG+AGG | 0.680092 | 7.1:+53446327 | MS.gene050231:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 53442436 | 53451825 | 53442436 | ID=MS.gene050231 |
| chr7.1 | mRNA | 53442436 | 53451825 | 53442436 | ID=MS.gene050231.t1;Parent=MS.gene050231 |
| chr7.1 | exon | 53442436 | 53442508 | 53442436 | ID=MS.gene050231.t1.exon1;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53442436 | 53442508 | 53442436 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53442594 | 53442724 | 53442594 | ID=MS.gene050231.t1.exon2;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53442594 | 53442724 | 53442594 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53444654 | 53444774 | 53444654 | ID=MS.gene050231.t1.exon3;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53444654 | 53444774 | 53444654 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53444871 | 53444935 | 53444871 | ID=MS.gene050231.t1.exon4;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53444871 | 53444935 | 53444871 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53445049 | 53445162 | 53445049 | ID=MS.gene050231.t1.exon5;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53445049 | 53445162 | 53445049 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53445366 | 53445440 | 53445366 | ID=MS.gene050231.t1.exon6;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53445366 | 53445440 | 53445366 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53445842 | 53445880 | 53445842 | ID=MS.gene050231.t1.exon7;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53445842 | 53445880 | 53445842 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53445957 | 53446028 | 53445957 | ID=MS.gene050231.t1.exon8;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53445957 | 53446028 | 53445957 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53446235 | 53446348 | 53446235 | ID=MS.gene050231.t1.exon9;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53446235 | 53446348 | 53446235 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53447219 | 53447290 | 53447219 | ID=MS.gene050231.t1.exon10;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53447219 | 53447290 | 53447219 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53447388 | 53447424 | 53447388 | ID=MS.gene050231.t1.exon11;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53447388 | 53447424 | 53447388 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53448210 | 53448322 | 53448210 | ID=MS.gene050231.t1.exon12;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53448210 | 53448322 | 53448210 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53450649 | 53450855 | 53450649 | ID=MS.gene050231.t1.exon13;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53450649 | 53450855 | 53450649 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| chr7.1 | exon | 53451748 | 53451825 | 53451748 | ID=MS.gene050231.t1.exon14;Parent=MS.gene050231.t1 |
| chr7.1 | CDS | 53451748 | 53451825 | 53451748 | ID=cds.MS.gene050231.t1;Parent=MS.gene050231.t1 |
| Gene Sequence |
| Protein sequence |
