Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66972.t1 | XP_003619012.1 | 94.8 | 387 | 17 | 3 | 1 | 385 | 1 | 386 | 7.50E-210 | 739.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66972.t1 | Q9C503 | 43.4 | 371 | 162 | 9 | 20 | 384 | 25 | 353 | 5.3e-71 | 269.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66972.t1 | G7KQ57 | 94.8 | 387 | 17 | 3 | 1 | 385 | 1 | 386 | 5.4e-210 | 739.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene66972 | 0.802406 | 5.70E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene66972 | 0.8025 | 5.45E-49 | -1.69E-46 |
| MS.gene050397 | MS.gene66972 | 0.825025 | 5.87E-54 | -1.69E-46 |
| MS.gene050404 | MS.gene66972 | 0.844378 | 7.85E-59 | -1.69E-46 |
| MS.gene050406 | MS.gene66972 | 0.864244 | 1.40E-64 | -1.69E-46 |
| MS.gene050426 | MS.gene66972 | -0.804188 | 2.44E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene66972 | 0.814316 | 1.64E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene66972 | 0.840111 | 1.06E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene66972 | 0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene051171 | MS.gene66972 | 0.86612 | 3.60E-65 | -1.69E-46 |
| MS.gene051242 | MS.gene66972 | 0.842981 | 1.85E-58 | -1.69E-46 |
| MS.gene051244 | MS.gene66972 | 0.839054 | 1.99E-57 | -1.69E-46 |
| MS.gene051582 | MS.gene66972 | 0.833331 | 5.67E-56 | -1.69E-46 |
| MS.gene051666 | MS.gene66972 | 0.811024 | 8.61E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene66972 | -0.803462 | 3.45E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene66972 | 0.815869 | 7.41E-52 | -1.69E-46 |
| MS.gene052134 | MS.gene66972 | 0.815995 | 6.95E-52 | -1.69E-46 |
| MS.gene052135 | MS.gene66972 | 0.810479 | 1.13E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene66972 | 0.821868 | 3.21E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene66972 | 0.81007 | 1.38E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene66972 | 0.80661 | 7.57E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene66972 | 0.822335 | 2.50E-53 | -1.69E-46 |
| MS.gene053330 | MS.gene66972 | 0.875077 | 4.09E-68 | -1.69E-46 |
| MS.gene053971 | MS.gene66972 | 0.876528 | 1.30E-68 | -1.69E-46 |
| MS.gene054102 | MS.gene66972 | 0.806421 | 8.29E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene66972 | 0.813327 | 2.71E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene66972 | 0.8919 | 2.60E-74 | -1.69E-46 |
| MS.gene055428 | MS.gene66972 | 0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene055601 | MS.gene66972 | -0.800052 | 1.73E-48 | -1.69E-46 |
| MS.gene056451 | MS.gene66972 | 0.841092 | 5.86E-58 | -1.69E-46 |
| MS.gene056612 | MS.gene66972 | 0.814492 | 1.50E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene66972 | 0.890352 | 1.06E-73 | -1.69E-46 |
| MS.gene056664 | MS.gene66972 | 0.816793 | 4.61E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene66972 | -0.816971 | 4.20E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene66972 | 0.818272 | 2.14E-52 | -1.69E-46 |
| MS.gene057048 | MS.gene66972 | 0.826578 | 2.51E-54 | -1.69E-46 |
| MS.gene057196 | MS.gene66972 | 0.85644 | 3.21E-62 | -1.69E-46 |
| MS.gene057310 | MS.gene66972 | 0.815305 | 9.90E-52 | -1.69E-46 |
| MS.gene058233 | MS.gene66972 | 0.866479 | 2.77E-65 | -1.69E-46 |
| MS.gene058276 | MS.gene66972 | 0.830714 | 2.51E-55 | -1.69E-46 |
| MS.gene058746 | MS.gene66972 | 0.908596 | 1.44E-81 | -1.69E-46 |
| MS.gene059512 | MS.gene66972 | 0.829877 | 4.02E-55 | -1.69E-46 |
| MS.gene060087 | MS.gene66972 | -0.80828 | 3.35E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene66972 | 0.81019 | 1.30E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene66972 | 0.800222 | 1.59E-48 | -1.69E-46 |
| MS.gene061049 | MS.gene66972 | 0.819623 | 1.05E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66972.t1 | MTR_6g032880 | 94.832 | 387 | 17 | 3 | 1 | 385 | 1 | 386 | 0.0 | 750 |
| MS.gene66972.t1 | MTR_7g085490 | 26.140 | 329 | 233 | 8 | 60 | 385 | 33 | 354 | 1.40e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66972.t1 | AT1G55370 | 43.976 | 332 | 146 | 6 | 55 | 384 | 60 | 353 | 2.20e-83 | 258 |
| MS.gene66972.t1 | AT1G55370 | 40.672 | 268 | 120 | 5 | 55 | 320 | 60 | 290 | 8.06e-53 | 178 |
| MS.gene66972.t1 | AT1G64770 | 24.269 | 342 | 231 | 9 | 53 | 385 | 26 | 348 | 5.02e-18 | 84.7 |
Find 74 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCATGATATTATATATT+TGG | 0.136987 | 6.4:-4007697 | None:intergenic |
| TTTCATGGTCTCCTACTAAT+TGG | 0.177748 | 6.4:+4006133 | MS.gene66972:CDS |
| CCTTTCTCTTCGCTTGTATT+TGG | 0.187072 | 6.4:-4006994 | None:intergenic |
| TAAGGTACTGAAGCTACTTT+TGG | 0.272432 | 6.4:-4005820 | None:intergenic |
| ATGCCACATAGGTGCCTTAT+AGG | 0.297987 | 6.4:-4005989 | None:intergenic |
| TCTTGTGGACTTAATACTAT+TGG | 0.306506 | 6.4:-4007643 | None:intergenic |
| TCAGTATTAGTTGGAAGAAA+TGG | 0.309706 | 6.4:+4007523 | MS.gene66972:CDS |
| CCTATTGCATAAGTTGCTTC+TGG | 0.319165 | 6.4:-4006910 | None:intergenic |
| TGGATTGATTACTTCCTATA+AGG | 0.324986 | 6.4:+4005975 | MS.gene66972:CDS |
| CAATTCTGAGGAATCTATTC+AGG | 0.346682 | 6.4:+4006176 | MS.gene66972:CDS |
| GAAACTCTCTCTTAATGTAT+TGG | 0.347057 | 6.4:-4005792 | None:intergenic |
| GCAGTGTCAGAAGGAGAATT+TGG | 0.352287 | 6.4:+4006039 | MS.gene66972:CDS |
| TATATTTGGATTGTGTAGAT+AGG | 0.365670 | 6.4:-4007683 | None:intergenic |
| TGGAAGTTGTATGGCCAAAA+TGG | 0.369055 | 6.4:+4005912 | MS.gene66972:CDS |
| GATGTGTTTCTAGTAGATTT+TGG | 0.381165 | 6.4:-4005727 | None:intergenic |
| TGAAGATAGTGGTGAGGAAA+TGG | 0.390876 | 6.4:+4007101 | MS.gene66972:CDS |
| TTCTCTTCGCTTGTATTTGG+AGG | 0.404265 | 6.4:-4006991 | None:intergenic |
| TTCATGGTCTCCTACTAATT+GGG | 0.411689 | 6.4:+4006134 | MS.gene66972:CDS |
| AAAATAAACTCCGATTCAAT+AGG | 0.413697 | 6.4:-4006964 | None:intergenic |
| TGATTATTTGTTCCCCAGCT+TGG | 0.421987 | 6.4:-4007057 | None:intergenic |
| TGTTGAATATAGCTAGGAAA+TGG | 0.428011 | 6.4:-4005766 | None:intergenic |
| CCAGAAGCAACTTATGCAAT+AGG | 0.428313 | 6.4:+4006910 | MS.gene66972:CDS |
| TCTAAGTAGTCATAGTTGAT+TGG | 0.433432 | 6.4:-4005847 | None:intergenic |
| CTGTTCAGTCCAGGCTCATC+AGG | 0.435338 | 6.4:+4007562 | MS.gene66972:CDS |
| TTTGGTGATGCTGTTATTCA+AGG | 0.448112 | 6.4:+4006057 | MS.gene66972:CDS |
| TATTAAGTCCACAAGATGTA+TGG | 0.449867 | 6.4:+4007650 | MS.gene66972:CDS |
| GCAGAAGATAGTGAAGATAG+TGG | 0.458702 | 6.4:+4007090 | MS.gene66972:CDS |
| AAAGGACCACATGACAAGAT+TGG | 0.460224 | 6.4:+4006766 | MS.gene66972:CDS |
| AGAAGAAACTCAGTATTAGT+TGG | 0.473799 | 6.4:+4007514 | MS.gene66972:CDS |
| CCTCCTTTCCATACATCTTG+TGG | 0.476094 | 6.4:-4007658 | None:intergenic |
| TTATGCAAAACCCAATTAGT+AGG | 0.479106 | 6.4:-4006144 | None:intergenic |
| CTGATGAGCCTGGACTGAAC+AGG | 0.479462 | 6.4:-4007561 | None:intergenic |
| AAAATGATGATGAAGTTTCA+TGG | 0.482731 | 6.4:+4006118 | MS.gene66972:CDS |
| TCTTTCCCTCTTCAAATGAC+AGG | 0.486076 | 6.4:+4006856 | MS.gene66972:CDS |
| AAGCTGGGGAACAAATAATC+AGG | 0.490227 | 6.4:+4007059 | MS.gene66972:CDS |
| ACAAGCGAAGAGAAAGGATT+CGG | 0.491617 | 6.4:+4007000 | MS.gene66972:CDS |
| GTGGACTTAATACTATTGGT+TGG | 0.500437 | 6.4:-4007639 | None:intergenic |
| GGAGTCACATTTGAAGAAGT+TGG | 0.501672 | 6.4:+4005889 | MS.gene66972:CDS |
| CTTTCAATTCCTGATGAGCC+TGG | 0.508570 | 6.4:-4007571 | None:intergenic |
| TCAATGAGTGTAAAACTTCG+AGG | 0.509014 | 6.4:-4007174 | None:intergenic |
| AGAAGTTGGTGGAAGTTGTA+TGG | 0.511764 | 6.4:+4005903 | MS.gene66972:CDS |
| TAGCCGACCGCCTATTGAAT+CGG | 0.513659 | 6.4:+4006954 | MS.gene66972:CDS |
| ATTAAAATACATTGTGACAT+TGG | 0.516339 | 6.4:+4006789 | MS.gene66972:CDS |
| TGCTTACTGTCAAATGACTA+AGG | 0.519977 | 6.4:-4006885 | None:intergenic |
| TCATAGTTGATTGGTTGGTA+AGG | 0.520007 | 6.4:-4005838 | None:intergenic |
| AGTAGTCATAGTTGATTGGT+TGG | 0.527301 | 6.4:-4005843 | None:intergenic |
| ATTGTGACATTGGAAGAAGA+TGG | 0.536047 | 6.4:+4006799 | MS.gene66972:CDS |
| TACTTAGAACAAGAATTCAA+TGG | 0.537821 | 6.4:+4005862 | MS.gene66972:CDS |
| ACATTGGAAGAAGATGGATT+AGG | 0.545100 | 6.4:+4006805 | MS.gene66972:CDS |
| GACTTAATACTATTGGTTGG+AGG | 0.550217 | 6.4:-4007636 | None:intergenic |
| CCAAATACAAGCGAAGAGAA+AGG | 0.551440 | 6.4:+4006994 | MS.gene66972:CDS |
| GAAACATACCTGTTCAGTCC+AGG | 0.552112 | 6.4:+4007553 | MS.gene66972:CDS |
| AGATAGTGAAGATAGTGGTG+AGG | 0.563650 | 6.4:+4007095 | MS.gene66972:CDS |
| CTTAATACTGCAGTGTCAGA+AGG | 0.569822 | 6.4:+4006030 | MS.gene66972:CDS |
| ATAGAACCTGTCATTTGAAG+AGG | 0.573445 | 6.4:-4006862 | None:intergenic |
| TTTAATCCAATCTTGTCATG+TGG | 0.580803 | 6.4:-4006772 | None:intergenic |
| GTCACATTTGAAGAAGTTGG+TGG | 0.580862 | 6.4:+4005892 | MS.gene66972:CDS |
| GAACAAGAATTCAATGGACA+TGG | 0.592739 | 6.4:+4005868 | MS.gene66972:CDS |
| CAATCCACTTGGTAGCAACA+TGG | 0.606969 | 6.4:-4005959 | None:intergenic |
| TAGAACCTGTCATTTGAAGA+GGG | 0.610090 | 6.4:-4006861 | None:intergenic |
| GCTACCATGTTGCTACCAAG+TGG | 0.611640 | 6.4:+4005955 | MS.gene66972:CDS |
| AAGTATGCTTACATATGTGT+TGG | 0.616114 | 6.4:+4007601 | MS.gene66972:CDS |
| AGTCCACAAGATGTATGGAA+AGG | 0.619952 | 6.4:+4007655 | MS.gene66972:CDS |
| CAGGTAGTATTAATAAACAA+AGG | 0.628059 | 6.4:+4006748 | MS.gene66972:intron |
| TATAAGGCACCTATGTGGCA+TGG | 0.628930 | 6.4:+4005991 | MS.gene66972:CDS |
| CCACAAGATGTATGGAAAGG+AGG | 0.629918 | 6.4:+4007658 | MS.gene66972:CDS |
| TAATATTAAAGGCAATTCTG+AGG | 0.647761 | 6.4:+4006164 | MS.gene66972:CDS |
| TAGGAAGTAATCAATCCACT+TGG | 0.654951 | 6.4:-4005970 | None:intergenic |
| ATAAACTCCGATTCAATAGG+CGG | 0.659158 | 6.4:-4006961 | None:intergenic |
| CTTCCTATAAGGCACCTATG+TGG | 0.663705 | 6.4:+4005986 | MS.gene66972:CDS |
| AAGGCACCTATGTGGCATGG+TGG | 0.665146 | 6.4:+4005994 | MS.gene66972:CDS |
| ACTCCGATTCAATAGGCGGT+CGG | 0.667753 | 6.4:-4006957 | None:intergenic |
| GGTGATGCTGTTATTCAAGG+AGG | 0.686198 | 6.4:+4006060 | MS.gene66972:CDS |
| AGAAGATGGATTAGGCTCAG+AGG | 0.699254 | 6.4:+4006813 | MS.gene66972:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAGTAAATACTTATA+AGG | - | chr6.4:4006355-4006374 | None:intergenic | 15.0% |
| !! | ATAAGATTAAAATAAAGTCA+AGG | + | chr6.4:4007297-4007316 | MS.gene66972:intron | 15.0% |
| !! | TAAGATTAAAATAAAGTCAA+GGG | + | chr6.4:4007298-4007317 | MS.gene66972:intron | 15.0% |
| !! | TTAAGCTGTTTATTTATAAA+TGG | - | chr6.4:4007262-4007281 | None:intergenic | 15.0% |
| !! | TTCTATTAATAATAGCAAAA+CGG | - | chr6.4:4007375-4007394 | None:intergenic | 15.0% |
| !!! | ATGTAATTTTGATTAATGAA+GGG | + | chr6.4:4007414-4007433 | MS.gene66972:intron | 15.0% |
| !!! | TATGTAATTTTGATTAATGA+AGG | + | chr6.4:4007413-4007432 | MS.gene66972:intron | 15.0% |
| !! | AAATTGTGAGAAAAATCATA+AGG | - | chr6.4:4006683-4006702 | None:intergenic | 20.0% |
| !! | ATTAAAATACATTGTGACAT+TGG | + | chr6.4:4006789-4006808 | MS.gene66972:CDS | 20.0% |
| !! | CTGTTTAATGGTTATTATTA+GGG | + | chr6.4:4006200-4006219 | MS.gene66972:intron | 20.0% |
| !! | TCTGTTTAATGGTTATTATT+AGG | + | chr6.4:4006199-4006218 | MS.gene66972:intron | 20.0% |
| !! | TGTTTAATGGTTATTATTAG+GGG | + | chr6.4:4006201-4006220 | MS.gene66972:intron | 20.0% |
| !!! | ATTACCCCTTATTATTATTT+TGG | + | chr6.4:4006539-4006558 | MS.gene66972:intron | 20.0% |
| !!! | TCAATAACTCTTTTTGTATA+GGG | - | chr6.4:4006387-4006406 | None:intergenic | 20.0% |
| !!! | TTGGTGTTTTTTTTAAATCA+GGG | + | chr6.4:4007490-4007509 | MS.gene66972:intron | 20.0% |
| !!! | TTTGGTGTTTTTTTTAAATC+AGG | + | chr6.4:4007489-4007508 | MS.gene66972:intron | 20.0% |
| ! | AAAATAAACTCCGATTCAAT+AGG | - | chr6.4:4006967-4006986 | None:intergenic | 25.0% |
| ! | AAAATGACTATTTACTCGTT+TGG | + | chr6.4:4007471-4007490 | MS.gene66972:intron | 25.0% |
| ! | ACAATAAGTAAGTATACTGA+AGG | - | chr6.4:4006323-4006342 | None:intergenic | 25.0% |
| ! | ATAAAGTCAAGGGAATATAA+CGG | + | chr6.4:4007308-4007327 | MS.gene66972:intron | 25.0% |
| ! | CAGGTAGTATTAATAAACAA+AGG | + | chr6.4:4006748-4006767 | MS.gene66972:intron | 25.0% |
| ! | CCAACCAAAATAATAATAAG+GGG | - | chr6.4:4006546-4006565 | None:intergenic | 25.0% |
| ! | GCCAACCAAAATAATAATAA+GGG | - | chr6.4:4006547-4006566 | None:intergenic | 25.0% |
| ! | TAATATTAAAGGCAATTCTG+AGG | + | chr6.4:4006164-4006183 | MS.gene66972:CDS | 25.0% |
| ! | TACTTAGAACAAGAATTCAA+TGG | + | chr6.4:4005862-4005881 | MS.gene66972:CDS | 25.0% |
| ! | TATATTTGGATTGTGTAGAT+AGG | - | chr6.4:4007686-4007705 | None:intergenic | 25.0% |
| ! | TGCCAACCAAAATAATAATA+AGG | - | chr6.4:4006548-4006567 | None:intergenic | 25.0% |
| !! | AAAATGATGATGAAGTTTCA+TGG | + | chr6.4:4006118-4006137 | MS.gene66972:CDS | 25.0% |
| !! | CTCAATAACTCTTTTTGTAT+AGG | - | chr6.4:4006388-4006407 | None:intergenic | 25.0% |
| !! | TGGGTTTTGCATAATATTAA+AGG | + | chr6.4:4006153-4006172 | MS.gene66972:CDS | 25.0% |
| !!! | AGATTTTGGAATGAAGATAT+TGG | - | chr6.4:4005716-4005735 | None:intergenic | 25.0% |
| !!! | ATTATTATTTTGGTTGGCAA+AGG | + | chr6.4:4006549-4006568 | MS.gene66972:intron | 25.0% |
| !!! | TGATTATTTTAGAAGTGTCT+CGG | + | chr6.4:4006602-4006621 | MS.gene66972:intron | 25.0% |
| !!! | TTGAAGGATTATTTTAGTGT+CGG | + | chr6.4:4006410-4006429 | MS.gene66972:intron | 25.0% |
| AAGTATGCTTACATATGTGT+TGG | + | chr6.4:4007601-4007620 | MS.gene66972:CDS | 30.0% | |
| ACATTGAAGATATCTTATGC+AGG | + | chr6.4:4006729-4006748 | MS.gene66972:intron | 30.0% | |
| AGAAAGGATTCGGAAAAATA+TGG | + | chr6.4:4007010-4007029 | MS.gene66972:CDS | 30.0% | |
| AGAAGAAACTCAGTATTAGT+TGG | + | chr6.4:4007514-4007533 | MS.gene66972:CDS | 30.0% | |
| ATACACTTGCACATATACTT+AGG | + | chr6.4:4007236-4007255 | MS.gene66972:intron | 30.0% | |
| ATCTATTCAGGTCTGTTTAA+TGG | + | chr6.4:4006188-4006207 | MS.gene66972:intron | 30.0% | |
| GAAACTCTCTCTTAATGTAT+TGG | - | chr6.4:4005795-4005814 | None:intergenic | 30.0% | |
| TATCGTTAAATCTATCGTTG+AGG | - | chr6.4:4007219-4007238 | None:intergenic | 30.0% | |
| TATTAAGTCCACAAGATGTA+TGG | + | chr6.4:4007650-4007669 | MS.gene66972:CDS | 30.0% | |
| TCAGTATTAGTTGGAAGAAA+TGG | + | chr6.4:4007523-4007542 | MS.gene66972:CDS | 30.0% | |
| TCTAAGTAGTCATAGTTGAT+TGG | - | chr6.4:4005850-4005869 | None:intergenic | 30.0% | |
| TCTTGTGGACTTAATACTAT+TGG | - | chr6.4:4007646-4007665 | None:intergenic | 30.0% | |
| TGGATTGATTACTTCCTATA+AGG | + | chr6.4:4005975-4005994 | MS.gene66972:CDS | 30.0% | |
| TGTTGAATATAGCTAGGAAA+TGG | - | chr6.4:4005769-4005788 | None:intergenic | 30.0% | |
| TTATGCAAAACCCAATTAGT+AGG | - | chr6.4:4006147-4006166 | None:intergenic | 30.0% | |
| TTTAATCCAATCTTGTCATG+TGG | - | chr6.4:4006775-4006794 | None:intergenic | 30.0% | |
| ! | AAGTTTTACACTCATTGACA+GGG | + | chr6.4:4007179-4007198 | MS.gene66972:CDS | 30.0% |
| ! | TAAGCAATTTTTACCAAGCT+GGG | + | chr6.4:4007044-4007063 | MS.gene66972:CDS | 30.0% |
| ! | TTAAGCAATTTTTACCAAGC+TGG | + | chr6.4:4007043-4007062 | MS.gene66972:CDS | 30.0% |
| !! | AAAGAGTTATTGAGTGTTGA+AGG | + | chr6.4:4006394-4006413 | MS.gene66972:intron | 30.0% |
| !! | TCCATTTTTCAGTTCCATTT+TGG | - | chr6.4:4005929-4005948 | None:intergenic | 30.0% |
| !! | TCTCTCTTTTAACTGTTTGT+AGG | - | chr6.4:4007130-4007149 | None:intergenic | 30.0% |
| !!! | AGAGACTATTTTGACTATTG+TGG | - | chr6.4:4006264-4006283 | None:intergenic | 30.0% |
| !!! | CCCCTTATTATTATTTTGGT+TGG | + | chr6.4:4006543-4006562 | MS.gene66972:intron | 30.0% |
| !!! | GATGTGTTTCTAGTAGATTT+TGG | - | chr6.4:4005730-4005749 | None:intergenic | 30.0% |
| !!! | TGAAGGATTATTTTAGTGTC+GGG | + | chr6.4:4006411-4006430 | MS.gene66972:intron | 30.0% |
| !!! | TGGTTTTGTTGAATATAGCT+AGG | - | chr6.4:4005775-4005794 | None:intergenic | 30.0% |
| AGTAGTCATAGTTGATTGGT+TGG | - | chr6.4:4005846-4005865 | None:intergenic | 35.0% | |
| ATAAACTCCGATTCAATAGG+CGG | - | chr6.4:4006964-4006983 | None:intergenic | 35.0% | |
| ATTGTGACATTGGAAGAAGA+TGG | + | chr6.4:4006799-4006818 | MS.gene66972:CDS | 35.0% | |
| CTGTCTCTTGAGGTTATAAA+AGG | + | chr6.4:4006639-4006658 | MS.gene66972:intron | 35.0% | |
| GAACAAGAATTCAATGGACA+TGG | + | chr6.4:4005868-4005887 | MS.gene66972:CDS | 35.0% | |
| GACTACTTCTTACACATTCA+AGG | + | chr6.4:4006504-4006523 | MS.gene66972:intron | 35.0% | |
| GCCAAAATGGAACTGAAAAA+TGG | + | chr6.4:4005925-4005944 | MS.gene66972:CDS | 35.0% | |
| GTGGACTTAATACTATTGGT+TGG | - | chr6.4:4007642-4007661 | None:intergenic | 35.0% | |
| TAGGAAGTAATCAATCCACT+TGG | - | chr6.4:4005973-4005992 | None:intergenic | 35.0% | |
| TCAATGAGTGTAAAACTTCG+AGG | - | chr6.4:4007177-4007196 | None:intergenic | 35.0% | |
| TGCTTACTGTCAAATGACTA+AGG | - | chr6.4:4006888-4006907 | None:intergenic | 35.0% | |
| TTCATGGTCTCCTACTAATT+GGG | + | chr6.4:4006134-4006153 | MS.gene66972:CDS | 35.0% | |
| TTTCATGGTCTCCTACTAAT+TGG | + | chr6.4:4006133-4006152 | MS.gene66972:CDS | 35.0% | |
| ! | AAGCAATTTTTACCAAGCTG+GGG | + | chr6.4:4007045-4007064 | MS.gene66972:CDS | 35.0% |
| ! | ACATTGGAAGAAGATGGATT+AGG | + | chr6.4:4006805-4006824 | MS.gene66972:CDS | 35.0% |
| ! | ATAGAACCTGTCATTTGAAG+AGG | - | chr6.4:4006865-4006884 | None:intergenic | 35.0% |
| ! | CAATTCTGAGGAATCTATTC+AGG | + | chr6.4:4006176-4006195 | MS.gene66972:CDS | 35.0% |
| ! | GAAGTTTTACACTCATTGAC+AGG | + | chr6.4:4007178-4007197 | MS.gene66972:CDS | 35.0% |
| ! | GACTTAATACTATTGGTTGG+AGG | - | chr6.4:4007639-4007658 | None:intergenic | 35.0% |
| ! | TAGAACCTGTCATTTGAAGA+GGG | - | chr6.4:4006864-4006883 | None:intergenic | 35.0% |
| ! | TCATAGTTGATTGGTTGGTA+AGG | - | chr6.4:4005841-4005860 | None:intergenic | 35.0% |
| !! | TTTGGTGATGCTGTTATTCA+AGG | + | chr6.4:4006057-4006076 | MS.gene66972:CDS | 35.0% |
| !!! | AAGGTACTGAAGCTACTTTT+GGG | - | chr6.4:4005822-4005841 | None:intergenic | 35.0% |
| !!! | GAAGGATTATTTTAGTGTCG+GGG | + | chr6.4:4006412-4006431 | MS.gene66972:intron | 35.0% |
| !!! | TAAGGTACTGAAGCTACTTT+TGG | - | chr6.4:4005823-4005842 | None:intergenic | 35.0% |
| AAAGGACCACATGACAAGAT+TGG | + | chr6.4:4006766-4006785 | MS.gene66972:CDS | 40.0% | |
| AAGCTGGGGAACAAATAATC+AGG | + | chr6.4:4007059-4007078 | MS.gene66972:CDS | 40.0% | |
| ACAAGCGAAGAGAAAGGATT+CGG | + | chr6.4:4007000-4007019 | MS.gene66972:CDS | 40.0% | |
| AGTCCACAAGATGTATGGAA+AGG | + | chr6.4:4007655-4007674 | MS.gene66972:CDS | 40.0% | |
| CCAAATACAAGCGAAGAGAA+AGG | + | chr6.4:4006994-4007013 | MS.gene66972:CDS | 40.0% | |
| CCAGAAGCAACTTATGCAAT+AGG | + | chr6.4:4006910-4006929 | MS.gene66972:CDS | 40.0% | |
| CCTATTGCATAAGTTGCTTC+TGG | - | chr6.4:4006913-4006932 | None:intergenic | 40.0% | |
| CCTTTCTCTTCGCTTGTATT+TGG | - | chr6.4:4006997-4007016 | None:intergenic | 40.0% | |
| CTTAATACTGCAGTGTCAGA+AGG | + | chr6.4:4006030-4006049 | MS.gene66972:CDS | 40.0% | |
| GATTTGAACTCTGTCTCTTG+AGG | + | chr6.4:4006629-4006648 | MS.gene66972:intron | 40.0% | |
| GCAGAAGATAGTGAAGATAG+TGG | + | chr6.4:4007090-4007109 | MS.gene66972:CDS | 40.0% | |
| GGAGTCACATTTGAAGAAGT+TGG | + | chr6.4:4005889-4005908 | MS.gene66972:CDS | 40.0% | |
| GTCACATTTGAAGAAGTTGG+TGG | + | chr6.4:4005892-4005911 | MS.gene66972:CDS | 40.0% | |
| TCTTTCCCTCTTCAAATGAC+AGG | + | chr6.4:4006856-4006875 | MS.gene66972:CDS | 40.0% | |
| TGATTATTTGTTCCCCAGCT+TGG | - | chr6.4:4007060-4007079 | None:intergenic | 40.0% | |
| TGGAAGTTGTATGGCCAAAA+TGG | + | chr6.4:4005912-4005931 | MS.gene66972:CDS | 40.0% | |
| TTCTCTTCGCTTGTATTTGG+AGG | - | chr6.4:4006994-4007013 | None:intergenic | 40.0% | |
| ! | AGATAGTGAAGATAGTGGTG+AGG | + | chr6.4:4007095-4007114 | MS.gene66972:CDS | 40.0% |
| ! | GGCTACTTGTTACACATTCA+GGG | - | chr6.4:4006243-4006262 | None:intergenic | 40.0% |
| ! | TGAAGATAGTGGTGAGGAAA+TGG | + | chr6.4:4007101-4007120 | MS.gene66972:CDS | 40.0% |
| ! | TGGCTACTTGTTACACATTC+AGG | - | chr6.4:4006244-4006263 | None:intergenic | 40.0% |
| !! | AGAAGTTGGTGGAAGTTGTA+TGG | + | chr6.4:4005903-4005922 | MS.gene66972:CDS | 40.0% |
| ATGCCACATAGGTGCCTTAT+AGG | - | chr6.4:4005992-4006011 | None:intergenic | 45.0% | |
| CCACAAGATGTATGGAAAGG+AGG | + | chr6.4:4007658-4007677 | MS.gene66972:CDS | 45.0% | |
| CCTCCTTTCCATACATCTTG+TGG | - | chr6.4:4007661-4007680 | None:intergenic | 45.0% | |
| CTTTCAATTCCTGATGAGCC+TGG | - | chr6.4:4007574-4007593 | None:intergenic | 45.0% | |
| GAAACATACCTGTTCAGTCC+AGG | + | chr6.4:4007553-4007572 | MS.gene66972:CDS | 45.0% | |
| GACACTGTCTCACACATCTA+GGG | + | chr6.4:4007445-4007464 | MS.gene66972:intron | 45.0% | |
| GCAGTGTCAGAAGGAGAATT+TGG | + | chr6.4:4006039-4006058 | MS.gene66972:CDS | 45.0% | |
| GGTGATGCTGTTATTCAAGG+AGG | + | chr6.4:4006060-4006079 | MS.gene66972:CDS | 45.0% | |
| TGACACTGTCTCACACATCT+AGG | + | chr6.4:4007444-4007463 | MS.gene66972:intron | 45.0% | |
| ! | ACTTTTCCACCATGCCACAT+AGG | - | chr6.4:4006003-4006022 | None:intergenic | 45.0% |
| ! | CAATCCACTTGGTAGCAACA+TGG | - | chr6.4:4005962-4005981 | None:intergenic | 45.0% |
| ! | CTTCCTATAAGGCACCTATG+TGG | + | chr6.4:4005986-4006005 | MS.gene66972:CDS | 45.0% |
| ! | TATAAGGCACCTATGTGGCA+TGG | + | chr6.4:4005991-4006010 | MS.gene66972:CDS | 45.0% |
| !! | AGAAGATGGATTAGGCTCAG+AGG | + | chr6.4:4006813-4006832 | MS.gene66972:CDS | 45.0% |
| AACGGCACTCACACGTCTTA+AGG | + | chr6.4:4007326-4007345 | MS.gene66972:intron | 50.0% | |
| ACTCCGATTCAATAGGCGGT+CGG | - | chr6.4:4006960-4006979 | None:intergenic | 50.0% | |
| GCTACCATGTTGCTACCAAG+TGG | + | chr6.4:4005955-4005974 | MS.gene66972:CDS | 50.0% | |
| TAGCCGACCGCCTATTGAAT+CGG | + | chr6.4:4006954-4006973 | MS.gene66972:CDS | 50.0% | |
| CTGATGAGCCTGGACTGAAC+AGG | - | chr6.4:4007564-4007583 | None:intergenic | 55.0% | |
| CTGTTCAGTCCAGGCTCATC+AGG | + | chr6.4:4007562-4007581 | MS.gene66972:CDS | 55.0% | |
| ! | AAGGCACCTATGTGGCATGG+TGG | + | chr6.4:4005994-4006013 | MS.gene66972:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 4005688 | 4007708 | 4005688 | ID=MS.gene66972 |
| chr6.4 | mRNA | 4005688 | 4007708 | 4005688 | ID=MS.gene66972.t1;Parent=MS.gene66972 |
| chr6.4 | exon | 4005688 | 4006197 | 4005688 | ID=MS.gene66972.t1.exon1;Parent=MS.gene66972.t1 |
| chr6.4 | CDS | 4005688 | 4006197 | 4005688 | ID=cds.MS.gene66972.t1;Parent=MS.gene66972.t1 |
| chr6.4 | exon | 4006751 | 4007200 | 4006751 | ID=MS.gene66972.t1.exon2;Parent=MS.gene66972.t1 |
| chr6.4 | CDS | 4006751 | 4007200 | 4006751 | ID=cds.MS.gene66972.t1;Parent=MS.gene66972.t1 |
| chr6.4 | exon | 4007511 | 4007708 | 4007511 | ID=MS.gene66972.t1.exon3;Parent=MS.gene66972.t1 |
| chr6.4 | CDS | 4007511 | 4007708 | 4007511 | ID=cds.MS.gene66972.t1;Parent=MS.gene66972.t1 |
| Gene Sequence |
| Protein sequence |
