Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68124.t1 | XP_003604084.1 | 96.2 | 314 | 11 | 1 | 1 | 313 | 1 | 314 | 2.30E-177 | 631.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68124.t1 | G7J991 | 96.2 | 314 | 11 | 1 | 1 | 313 | 1 | 314 | 1.7e-177 | 631.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049182 | MS.gene68124 | -0.833308 | 5.75E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene68124 | 0.819012 | 1.45E-52 | -1.69E-46 |
| MS.gene049320 | MS.gene68124 | 0.813358 | 2.67E-51 | -1.69E-46 |
| MS.gene05010 | MS.gene68124 | 0.805383 | 1.37E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene68124 | 0.819594 | 1.07E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene68124 | 0.823928 | 1.06E-53 | -1.69E-46 |
| MS.gene050496 | MS.gene68124 | 0.803918 | 2.77E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene68124 | 0.832832 | 7.55E-56 | -1.69E-46 |
| MS.gene050518 | MS.gene68124 | 0.835452 | 1.66E-56 | -1.69E-46 |
| MS.gene050612 | MS.gene68124 | 0.839914 | 1.19E-57 | -1.69E-46 |
| MS.gene050675 | MS.gene68124 | 0.80283 | 4.66E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene68124 | 0.802731 | 4.88E-49 | -1.69E-46 |
| MS.gene050876 | MS.gene68124 | 0.852791 | 3.66E-61 | -1.69E-46 |
| MS.gene05087 | MS.gene68124 | 0.802181 | 6.34E-49 | -1.69E-46 |
| MS.gene050986 | MS.gene68124 | 0.837693 | 4.47E-57 | -1.69E-46 |
| MS.gene051317 | MS.gene68124 | 0.8072 | 5.68E-50 | -1.69E-46 |
| MS.gene051959 | MS.gene68124 | -0.80285 | 4.61E-49 | -1.69E-46 |
| MS.gene051960 | MS.gene68124 | -0.813763 | 2.17E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene68124 | 0.848343 | 6.51E-60 | -1.69E-46 |
| MS.gene055134 | MS.gene68124 | -0.841524 | 4.51E-58 | -1.69E-46 |
| MS.gene055362 | MS.gene68124 | 0.811018 | 8.63E-51 | -1.69E-46 |
| MS.gene055634 | MS.gene68124 | 0.852404 | 4.72E-61 | -1.69E-46 |
| MS.gene055751 | MS.gene68124 | 0.822171 | 2.73E-53 | -1.69E-46 |
| MS.gene055776 | MS.gene68124 | 0.872026 | 4.36E-67 | -1.69E-46 |
| MS.gene055849 | MS.gene68124 | 0.875248 | 3.58E-68 | -1.69E-46 |
| MS.gene056185 | MS.gene68124 | -0.825195 | 5.35E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene68124 | 0.803864 | 2.84E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene68124 | 0.838092 | 3.53E-57 | -1.69E-46 |
| MS.gene056910 | MS.gene68124 | 0.809031 | 2.31E-50 | -1.69E-46 |
| MS.gene057001 | MS.gene68124 | -0.804654 | 1.95E-49 | -1.69E-46 |
| MS.gene057148 | MS.gene68124 | 0.840128 | 1.05E-57 | -1.69E-46 |
| MS.gene057684 | MS.gene68124 | 0.820269 | 7.50E-53 | -1.69E-46 |
| MS.gene057986 | MS.gene68124 | 0.821912 | 3.14E-53 | -1.69E-46 |
| MS.gene058719 | MS.gene68124 | 0.820171 | 7.90E-53 | -1.69E-46 |
| MS.gene058773 | MS.gene68124 | 0.830927 | 2.23E-55 | -1.69E-46 |
| MS.gene058774 | MS.gene68124 | 0.812745 | 3.63E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene68124 | 0.836457 | 9.25E-57 | -1.69E-46 |
| MS.gene059026 | MS.gene68124 | 0.832855 | 7.45E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene68124 | 0.821412 | 4.09E-53 | -1.69E-46 |
| MS.gene059837 | MS.gene68124 | 0.81599 | 6.97E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene68124 | 0.832434 | 9.47E-56 | -1.69E-46 |
| MS.gene060703 | MS.gene68124 | 0.818908 | 1.53E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene68124 | 0.816385 | 5.68E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68124.t1 | MTR_3g118320 | 97.771 | 314 | 6 | 1 | 1 | 313 | 1 | 314 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68124.t1 | AT5G17670 | 68.070 | 285 | 84 | 4 | 30 | 313 | 31 | 309 | 7.77e-137 | 390 |
Find 118 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGTATATGCAGCAATTT+GGG | 0.178912 | 3.4:-100221246 | MS.gene68124:CDS |
| CGTCTGTATATGCAGCAATT+TGG | 0.240390 | 3.4:-100221247 | MS.gene68124:CDS |
| AAGAGTGCCACGCCAGTAAT+TGG | 0.244199 | 3.4:+100221396 | None:intergenic |
| CATTCACCTGCTTGTATCCT+TGG | 0.277029 | 3.4:+100220740 | None:intergenic |
| ATAACACCAGGGACGCCTTT+TGG | 0.317246 | 3.4:+100221172 | None:intergenic |
| TCAGAGTTGCCTCCAGCTTC+TGG | 0.320028 | 3.4:+100221500 | None:intergenic |
| TTGGATTTGAGTTTCCAAAA+AGG | 0.331624 | 3.4:+100220878 | None:intergenic |
| TATTTATTGAACCAGGGGTT+AGG | 0.339291 | 3.4:-100221541 | MS.gene68124:intron |
| ACATTGCGTGCTCGCTTTGT+TGG | 0.348023 | 3.4:-100220763 | MS.gene68124:CDS |
| CGATCAAACCAGCGGCATTT+CGG | 0.365710 | 3.4:+100221422 | None:intergenic |
| GGTGAGCATTTGGATGGAAT+TGG | 0.366585 | 3.4:+100221686 | None:intergenic |
| GGAAGTGCAGGCTCAGCATT+TGG | 0.368790 | 3.4:+100220859 | None:intergenic |
| ATATCATTGTTATTAACTCT+TGG | 0.371502 | 3.4:-100221214 | MS.gene68124:CDS |
| GTTTGATCGATCCCAATTAC+TGG | 0.372683 | 3.4:-100221408 | MS.gene68124:CDS |
| AGTTAATAACAATGATATAT+TGG | 0.374538 | 3.4:+100221219 | None:intergenic |
| AGAAGAAGACGGTGAGCATT+TGG | 0.380289 | 3.4:+100221676 | None:intergenic |
| TTTGTGGGCAAGCAGATGTA+TGG | 0.392192 | 3.4:-100220599 | MS.gene68124:CDS |
| AACCAACGCCTGTCCTTGAT+TGG | 0.395983 | 3.4:-100221372 | MS.gene68124:CDS |
| ATCCATTGTTCCAACACATC+AGG | 0.397261 | 3.4:+100220456 | None:intergenic |
| TAATAATTTCTCAGGTTTGT+GGG | 0.400581 | 3.4:-100220614 | MS.gene68124:intron |
| CGAGCACGCAATGTTATGTT+GGG | 0.408081 | 3.4:+100220772 | None:intergenic |
| CAGTCTCCTCGGGAAGTAGC+TGG | 0.414848 | 3.4:+100220824 | None:intergenic |
| TGTTAACTTGTGGAGCAAAA+TGG | 0.418912 | 3.4:-100221721 | MS.gene68124:CDS |
| TTGAGGTGAGGGGTGTAAAC+AGG | 0.422172 | 3.4:+100221100 | None:intergenic |
| TCAAGATGAGCTGATACTTC+TGG | 0.423594 | 3.4:+100220561 | None:intergenic |
| ATAATAATTTCTCAGGTTTG+TGG | 0.429279 | 3.4:-100220615 | MS.gene68124:intron |
| ATTTATTGAACCAGGGGTTA+GGG | 0.434184 | 3.4:-100221540 | MS.gene68124:intron |
| CGGTGCACTTAACATTTCCC+TGG | 0.441926 | 3.4:-100220538 | MS.gene68124:CDS |
| GAAGTATCAGCTCATCTTGA+CGG | 0.443659 | 3.4:-100220558 | MS.gene68124:CDS |
| CAGGGGTTAGGGAACAATTC+CGG | 0.447536 | 3.4:-100221529 | MS.gene68124:CDS |
| CTCAAGTATGTATGCATAGC+AGG | 0.460049 | 3.4:-100221082 | MS.gene68124:CDS |
| ATGACATCATCTGAACCAAC+CGG | 0.461617 | 3.4:+100220498 | None:intergenic |
| CCACCTCCAAAAGGCGTCCC+TGG | 0.469313 | 3.4:-100221178 | MS.gene68124:CDS |
| GCGGCATTTCGGAGCCAATC+AGG | 0.471608 | 3.4:+100221433 | None:intergenic |
| ACAAAATGAAGGTATATTCA+AGG | 0.471722 | 3.4:-100220907 | MS.gene68124:intron |
| CTCTCTTCAAATACCAATCA+AGG | 0.471850 | 3.4:+100221359 | None:intergenic |
| GCGAGCACGCAATGTTATGT+TGG | 0.473012 | 3.4:+100220771 | None:intergenic |
| CGTGCTCGCTTTGTTGGCCA+AGG | 0.474939 | 3.4:-100220757 | MS.gene68124:CDS |
| AGAGTGCCACGCCAGTAATT+GGG | 0.476971 | 3.4:+100221397 | None:intergenic |
| GAGACCACTCTATCATTGAT+TGG | 0.491581 | 3.4:-100221295 | MS.gene68124:CDS |
| CATCTTCAAGCTAATTAAAG+AGG | 0.492324 | 3.4:+100220427 | None:intergenic |
| TCATTGATTGGTCACTCGGC+TGG | 0.494886 | 3.4:-100221283 | MS.gene68124:CDS |
| GATTGGCTCCGAAATGCCGC+TGG | 0.497694 | 3.4:-100221430 | MS.gene68124:CDS |
| GACGGCGGGCCGATAGTTGT+TGG | 0.503129 | 3.4:+100221640 | None:intergenic |
| GAAGTATCTGTAGGAAGTGC+AGG | 0.505483 | 3.4:+100220847 | None:intergenic |
| GGGAGTGGTAAACTCCATCC+AGG | 0.507069 | 3.4:+100220520 | None:intergenic |
| CTCAGGAGGTGCTAACTCCA+TGG | 0.507697 | 3.4:+100221315 | None:intergenic |
| TTGATAATAGCAGTCTCCTC+GGG | 0.515621 | 3.4:+100220814 | None:intergenic |
| GCACTTAACATTTCCCTGGA+TGG | 0.518025 | 3.4:-100220534 | MS.gene68124:CDS |
| TTGGTCACTCGGCTGGAGGA+TGG | 0.518671 | 3.4:-100221276 | MS.gene68124:CDS |
| CTGGTGTTATCGATCAAACC+AGG | 0.522198 | 3.4:-100221159 | MS.gene68124:CDS |
| AATATTGTTGAACATAATCA+AGG | 0.524897 | 3.4:+100221131 | None:intergenic |
| CCAATCAGGTCTTGACACCT+TGG | 0.525622 | 3.4:+100221447 | None:intergenic |
| CAAAATGAAGGTATATTCAA+GGG | 0.525750 | 3.4:-100220906 | MS.gene68124:intron |
| TCGGCCCGCCGTCATTCTCC+CGG | 0.526986 | 3.4:-100221630 | MS.gene68124:intron |
| ATCAATGATAGAGTGGTCTC+AGG | 0.527336 | 3.4:+100221298 | None:intergenic |
| CCCCTGATGTGTTGGAACAA+TGG | 0.527934 | 3.4:-100220458 | MS.gene68124:CDS |
| TTGTGGGCAAGCAGATGTAT+GGG | 0.530004 | 3.4:-100220598 | MS.gene68124:CDS |
| TCTATCATTGATTGGTCACT+CGG | 0.533151 | 3.4:-100221287 | MS.gene68124:CDS |
| TTCAAATACCAATCAAGGAC+AGG | 0.534115 | 3.4:+100221364 | None:intergenic |
| CCTCATCATCCACCTCCAAA+AGG | 0.539353 | 3.4:-100221187 | MS.gene68124:CDS |
| CTGCTTCCACCAACAACTAT+CGG | 0.539905 | 3.4:-100221649 | MS.gene68124:CDS |
| TCCATTGTTCCAACACATCA+GGG | 0.540776 | 3.4:+100220457 | None:intergenic |
| TTCCGGTGACTACCAGAAGC+TGG | 0.544893 | 3.4:-100221512 | MS.gene68124:CDS |
| TGCATACATACTTGAGGTGA+GGG | 0.545124 | 3.4:+100221089 | None:intergenic |
| GTATGGTTCCCCTGATGTGT+TGG | 0.547140 | 3.4:-100220466 | MS.gene68124:CDS |
| CAAGCAGATGTATGGGGCGA+TGG | 0.548229 | 3.4:-100220591 | MS.gene68124:CDS |
| TTTGATAATAGCAGTCTCCT+CGG | 0.548689 | 3.4:+100220813 | None:intergenic |
| CTGGTTTGATCGATAACACC+AGG | 0.550685 | 3.4:+100221160 | None:intergenic |
| CTCCAGCTTCTGGTAGTCAC+CGG | 0.551919 | 3.4:+100221510 | None:intergenic |
| CCAAGGTGTCAAGACCTGAT+TGG | 0.553014 | 3.4:-100221447 | MS.gene68124:CDS |
| GGATGGAGTTTACCACTCCC+CGG | 0.562006 | 3.4:-100220517 | MS.gene68124:CDS |
| GAGACTAACCGGGAGAATGA+CGG | 0.567802 | 3.4:+100221622 | None:intergenic |
| AGTCTCCTCGGGAAGTAGCT+GGG | 0.569738 | 3.4:+100220825 | None:intergenic |
| AACATAATCAAGGAGACCCC+TGG | 0.569925 | 3.4:+100221141 | None:intergenic |
| ATCGATCCCAATTACTGGCG+TGG | 0.571483 | 3.4:-100221403 | MS.gene68124:CDS |
| GGCGGGCCGATAGTTGTTGG+TGG | 0.571827 | 3.4:+100221643 | None:intergenic |
| CATCTGAACCAACCGGGGAG+TGG | 0.574033 | 3.4:+100220505 | None:intergenic |
| AGTTGATGATGCTGTTCAAG+AGG | 0.575707 | 3.4:-100221338 | MS.gene68124:CDS |
| CGTGTCCACAGTTGTTGCCA+AGG | 0.576292 | 3.4:-100221464 | MS.gene68124:CDS |
| GGAGTTTACCACTCCCCGGT+TGG | 0.585654 | 3.4:-100220513 | MS.gene68124:CDS |
| GAAGACGGTGAGCATTTGGA+TGG | 0.590394 | 3.4:+100221680 | None:intergenic |
| TGACATCATCTGAACCAACC+GGG | 0.591852 | 3.4:+100220499 | None:intergenic |
| TGATGCTGTTCAAGAGGCCA+TGG | 0.593740 | 3.4:-100221332 | MS.gene68124:CDS |
| TGTTGGCCAAGGATACAAGC+AGG | 0.599233 | 3.4:-100220746 | MS.gene68124:intron |
| GATGTCATTAGACCATGGTA+TGG | 0.601444 | 3.4:-100220483 | MS.gene68124:CDS |
| TACCAATCAAGGACAGGCGT+TGG | 0.602600 | 3.4:+100221370 | None:intergenic |
| CGAGCAGTGATGTTAACTTG+TGG | 0.605981 | 3.4:-100221731 | None:intergenic |
| TTGATTGGTCACTCGGCTGG+AGG | 0.606373 | 3.4:-100221280 | MS.gene68124:CDS |
| TGACACCTTGGCAACAACTG+TGG | 0.611400 | 3.4:+100221459 | None:intergenic |
| CTGCTATGCATACATACTTG+AGG | 0.615240 | 3.4:+100221083 | None:intergenic |
| ATGCATACATACTTGAGGTG+AGG | 0.617128 | 3.4:+100221088 | None:intergenic |
| AAAATGAAGGTATATTCAAG+GGG | 0.625084 | 3.4:-100220905 | MS.gene68124:intron |
| AGCACGCAATGTTATGTTGG+GGG | 0.626405 | 3.4:+100220774 | None:intergenic |
| GAGCACGCAATGTTATGTTG+GGG | 0.634026 | 3.4:+100220773 | None:intergenic |
| TACTTCCCAGCTACTTCCCG+AGG | 0.636324 | 3.4:-100220830 | MS.gene68124:CDS |
| AGTAGCTGGGAAGTATCTGT+AGG | 0.636586 | 3.4:+100220838 | None:intergenic |
| GCAACTCTGAACAATAACTA+CGG | 0.639683 | 3.4:-100221487 | MS.gene68124:CDS |
| GTGACCAATCAATGATAGAG+TGG | 0.646895 | 3.4:+100221291 | None:intergenic |
| AATGATAGAGTGGTCTCAGG+AGG | 0.654021 | 3.4:+100221301 | None:intergenic |
| GAAGCAGATGAAGAAGAAGA+CGG | 0.657300 | 3.4:+100221665 | None:intergenic |
| TGTGGGCAAGCAGATGTATG+GGG | 0.663496 | 3.4:-100220597 | MS.gene68124:CDS |
| AGTATGTATGCATAGCAGGA+AGG | 0.664109 | 3.4:-100221078 | MS.gene68124:intron |
| TGGTGTTATCGATCAAACCA+GGG | 0.665729 | 3.4:-100221158 | MS.gene68124:CDS |
| CAGATGATGTCATTAGACCA+TGG | 0.669037 | 3.4:-100220488 | MS.gene68124:CDS |
| GACATCATCTGAACCAACCG+GGG | 0.670989 | 3.4:+100220500 | None:intergenic |
| CTAACCGGGAGAATGACGGC+GGG | 0.672855 | 3.4:+100221626 | None:intergenic |
| GGAGTGGTAAACTCCATCCA+GGG | 0.679305 | 3.4:+100220521 | None:intergenic |
| TCTGTATATGCAGCAATTTG+GGG | 0.680712 | 3.4:-100221245 | MS.gene68124:CDS |
| GCATTTGGATGGAATTGGAG+AGG | 0.682203 | 3.4:+100221691 | None:intergenic |
| CCATTGTTCCAACACATCAG+GGG | 0.693490 | 3.4:+100220458 | None:intergenic |
| GCATACATACTTGAGGTGAG+GGG | 0.697105 | 3.4:+100221090 | None:intergenic |
| ACTAACCGGGAGAATGACGG+CGG | 0.699406 | 3.4:+100221625 | None:intergenic |
| GGTGTTATCGATCAAACCAG+GGG | 0.713378 | 3.4:-100221157 | MS.gene68124:CDS |
| CGGTGACTACCAGAAGCTGG+AGG | 0.713933 | 3.4:-100221509 | MS.gene68124:CDS |
| ACATCAGGGGAACCATACCA+TGG | 0.720174 | 3.4:+100220471 | None:intergenic |
| ATTGGGATCGATCAAACCAG+CGG | 0.724154 | 3.4:+100221414 | None:intergenic |
| TGGTTTGATCGATAACACCA+GGG | 0.758878 | 3.4:+100221161 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATTATTATTAGAACTT+TGG | + | chr3.4:100221536-100221555 | None:intergenic | 15.0% |
| !! | AGTTAATAACAATGATATAT+TGG | + | chr3.4:100220943-100220962 | None:intergenic | 15.0% |
| !! | AATATTGTTGAACATAATCA+AGG | + | chr3.4:100221031-100221050 | None:intergenic | 20.0% |
| !! | ATTGTATAGTAAGTTATGTT+TGG | + | chr3.4:100221208-100221227 | None:intergenic | 20.0% |
| !! | TTAATTTATAGCCAAAACTA+TGG | - | chr3.4:100221461-100221480 | MS.gene68124:CDS | 20.0% |
| !! | TTGTATAGTAAGTTATGTTT+GGG | + | chr3.4:100221207-100221226 | None:intergenic | 20.0% |
| !!! | AGTTCTAATAATAATTTCTC+AGG | - | chr3.4:100221537-100221556 | MS.gene68124:intron | 20.0% |
| !!! | ATATCATTGTTATTAACTCT+TGG | - | chr3.4:100220945-100220964 | MS.gene68124:intron | 20.0% |
| !!! | TAGTTTTGGCTATAAATTAA+CGG | + | chr3.4:100221461-100221480 | None:intergenic | 20.0% |
| ! | ATAATAATTTCTCAGGTTTG+TGG | - | chr3.4:100221544-100221563 | MS.gene68124:intron | 25.0% |
| ! | CATTTCTTACTACAAAATGA+AGG | - | chr3.4:100221241-100221260 | MS.gene68124:CDS | 25.0% |
| ! | TAATAATTTCTCAGGTTTGT+GGG | - | chr3.4:100221545-100221564 | MS.gene68124:intron | 25.0% |
| !! | AAAATGAAGGTATATTCAAG+GGG | - | chr3.4:100221254-100221273 | MS.gene68124:CDS | 25.0% |
| !! | ACAAAATGAAGGTATATTCA+AGG | - | chr3.4:100221252-100221271 | MS.gene68124:CDS | 25.0% |
| !! | CAAAATGAAGGTATATTCAA+GGG | - | chr3.4:100221253-100221272 | MS.gene68124:CDS | 25.0% |
| !! | GTTCTTTATTTATTGAACCA+GGG | - | chr3.4:100220612-100220631 | MS.gene68124:intron | 25.0% |
| !! | TTCTTTATTTATTGAACCAG+GGG | - | chr3.4:100220613-100220632 | MS.gene68124:intron | 25.0% |
| !!! | ATCAAAAAAGACTACTTTTG+AGG | + | chr3.4:100221142-100221161 | None:intergenic | 25.0% |
| !!! | TCAAAAAAGACTACTTTTGA+GGG | + | chr3.4:100221141-100221160 | None:intergenic | 25.0% |
| AAAGAGAAATAGAGACTAAC+CGG | + | chr3.4:100220551-100220570 | None:intergenic | 30.0% | |
| ATAGTAAGTTATGTTTGGGT+TGG | + | chr3.4:100221203-100221222 | None:intergenic | 30.0% | |
| TTATTTGCTTGTGATAGATG+CGG | - | chr3.4:100221498-100221517 | MS.gene68124:CDS | 30.0% | |
| ! | GGTTCTTTATTTATTGAACC+AGG | - | chr3.4:100220611-100220630 | MS.gene68124:intron | 30.0% |
| ! | TGGATTTGAGTTTCCAAAAA+GGG | + | chr3.4:100221283-100221302 | None:intergenic | 30.0% |
| ! | TTGGATTTGAGTTTCCAAAA+AGG | + | chr3.4:100221284-100221303 | None:intergenic | 30.0% |
| AAGAGAAATAGAGACTAACC+GGG | + | chr3.4:100220550-100220569 | None:intergenic | 35.0% | |
| ATTTATTGAACCAGGGGTTA+GGG | - | chr3.4:100220619-100220638 | MS.gene68124:intron | 35.0% | |
| CTCTCTTCAAATACCAATCA+AGG | + | chr3.4:100220803-100220822 | None:intergenic | 35.0% | |
| GCAACTCTGAACAATAACTA+CGG | - | chr3.4:100220672-100220691 | MS.gene68124:intron | 35.0% | |
| GTCTGTATATGCAGCAATTT+GGG | - | chr3.4:100220913-100220932 | MS.gene68124:intron | 35.0% | |
| TATTTATTGAACCAGGGGTT+AGG | - | chr3.4:100220618-100220637 | MS.gene68124:intron | 35.0% | |
| TCTGTATATGCAGCAATTTG+GGG | - | chr3.4:100220914-100220933 | MS.gene68124:intron | 35.0% | |
| TTCAAATACCAATCAAGGAC+AGG | + | chr3.4:100220798-100220817 | None:intergenic | 35.0% | |
| ! | GGATTTGAGTTTCCAAAAAG+GGG | + | chr3.4:100221282-100221301 | None:intergenic | 35.0% |
| ! | TCTATCATTGATTGGTCACT+CGG | - | chr3.4:100220872-100220891 | MS.gene68124:CDS | 35.0% |
| ! | TTTGATAATAGCAGTCTCCT+CGG | + | chr3.4:100221349-100221368 | None:intergenic | 35.0% |
| !! | TGTTAACTTGTGGAGCAAAA+TGG | - | chr3.4:100220438-100220457 | MS.gene68124:CDS | 35.0% |
| AACACACACACACTCTTTCA+AGG | - | chr3.4:100221105-100221124 | MS.gene68124:CDS | 40.0% | |
| AACCAAATGAATGCGATGTG+AGG | + | chr3.4:100220595-100220614 | None:intergenic | 40.0% | |
| AGTATGTATGCATAGCAGGA+AGG | - | chr3.4:100221081-100221100 | MS.gene68124:CDS | 40.0% | |
| ATCAATGATAGAGTGGTCTC+AGG | + | chr3.4:100220864-100220883 | None:intergenic | 40.0% | |
| ATCCATTGTTCCAACACATC+AGG | + | chr3.4:100221706-100221725 | None:intergenic | 40.0% | |
| ATGACATCATCTGAACCAAC+CGG | + | chr3.4:100221664-100221683 | None:intergenic | 40.0% | |
| ATGCATACATACTTGAGGTG+AGG | + | chr3.4:100221074-100221093 | None:intergenic | 40.0% | |
| CAGATGATGTCATTAGACCA+TGG | - | chr3.4:100221671-100221690 | MS.gene68124:CDS | 40.0% | |
| CGTCTGTATATGCAGCAATT+TGG | - | chr3.4:100220912-100220931 | MS.gene68124:intron | 40.0% | |
| CTCAAGTATGTATGCATAGC+AGG | - | chr3.4:100221077-100221096 | MS.gene68124:intron | 40.0% | |
| CTGCTATGCATACATACTTG+AGG | + | chr3.4:100221079-100221098 | None:intergenic | 40.0% | |
| GAAGCAGATGAAGAAGAAGA+CGG | + | chr3.4:100220497-100220516 | None:intergenic | 40.0% | |
| GAGACCACTCTATCATTGAT+TGG | - | chr3.4:100220864-100220883 | MS.gene68124:CDS | 40.0% | |
| GATGTCATTAGACCATGGTA+TGG | - | chr3.4:100221676-100221695 | MS.gene68124:CDS | 40.0% | |
| GTGACCAATCAATGATAGAG+TGG | + | chr3.4:100220871-100220890 | None:intergenic | 40.0% | |
| GTTTGATCGATCCCAATTAC+TGG | - | chr3.4:100220751-100220770 | MS.gene68124:CDS | 40.0% | |
| TCAAGATGAGCTGATACTTC+TGG | + | chr3.4:100221601-100221620 | None:intergenic | 40.0% | |
| TCCATTGTTCCAACACATCA+GGG | + | chr3.4:100221705-100221724 | None:intergenic | 40.0% | |
| TGCATACATACTTGAGGTGA+GGG | + | chr3.4:100221073-100221092 | None:intergenic | 40.0% | |
| TGGTTTGATCGATAACACCA+GGG | + | chr3.4:100221001-100221020 | None:intergenic | 40.0% | |
| ! | CAGTTTGCACACCATAGTTT+TGG | + | chr3.4:100221475-100221494 | None:intergenic | 40.0% |
| ! | GAAGTATCAGCTCATCTTGA+CGG | - | chr3.4:100221601-100221620 | MS.gene68124:intron | 40.0% |
| ! | TTGATAATAGCAGTCTCCTC+GGG | + | chr3.4:100221348-100221367 | None:intergenic | 40.0% |
| !! | AAGTTATGTTTGGGTTGGCA+TGG | + | chr3.4:100221198-100221217 | None:intergenic | 40.0% |
| !! | AGTTGATGATGCTGTTCAAG+AGG | - | chr3.4:100220821-100220840 | MS.gene68124:CDS | 40.0% |
| !! | TGGTGTTATCGATCAAACCA+GGG | - | chr3.4:100221001-100221020 | MS.gene68124:intron | 40.0% |
| AACATAATCAAGGAGACCCC+TGG | + | chr3.4:100221021-100221040 | None:intergenic | 45.0% | |
| AATGATAGAGTGGTCTCAGG+AGG | + | chr3.4:100220861-100220880 | None:intergenic | 45.0% | |
| AGAAGAAGACGGTGAGCATT+TGG | + | chr3.4:100220486-100220505 | None:intergenic | 45.0% | |
| AGCACGCAATGTTATGTTGG+GGG | + | chr3.4:100221388-100221407 | None:intergenic | 45.0% | |
| ATTGGGATCGATCAAACCAG+CGG | + | chr3.4:100220748-100220767 | None:intergenic | 45.0% | |
| CATTCACCTGCTTGTATCCT+TGG | + | chr3.4:100221422-100221441 | None:intergenic | 45.0% | |
| CCATTGTTCCAACACATCAG+GGG | + | chr3.4:100221704-100221723 | None:intergenic | 45.0% | |
| CGAGCACGCAATGTTATGTT+GGG | + | chr3.4:100221390-100221409 | None:intergenic | 45.0% | |
| CTCCTCACATCGCATTCATT+TGG | - | chr3.4:100220590-100220609 | MS.gene68124:CDS | 45.0% | |
| CTGCTTCCACCAACAACTAT+CGG | - | chr3.4:100220510-100220529 | MS.gene68124:CDS | 45.0% | |
| GAGCACGCAATGTTATGTTG+GGG | + | chr3.4:100221389-100221408 | None:intergenic | 45.0% | |
| GCACTTAACATTTCCCTGGA+TGG | - | chr3.4:100221625-100221644 | MS.gene68124:intron | 45.0% | |
| GCATACATACTTGAGGTGAG+GGG | + | chr3.4:100221072-100221091 | None:intergenic | 45.0% | |
| GCATTTGGATGGAATTGGAG+AGG | + | chr3.4:100220471-100220490 | None:intergenic | 45.0% | |
| GGTGAGCATTTGGATGGAAT+TGG | + | chr3.4:100220476-100220495 | None:intergenic | 45.0% | |
| TGACATCATCTGAACCAACC+GGG | + | chr3.4:100221663-100221682 | None:intergenic | 45.0% | |
| TGTTATGTTGGGGGAAGAAG+TGG | + | chr3.4:100221379-100221398 | None:intergenic | 45.0% | |
| TTGTGGGCAAGCAGATGTAT+GGG | - | chr3.4:100221561-100221580 | MS.gene68124:intron | 45.0% | |
| TTTGTGGGCAAGCAGATGTA+TGG | - | chr3.4:100221560-100221579 | MS.gene68124:intron | 45.0% | |
| ! | CTGGTTTGATCGATAACACC+AGG | + | chr3.4:100221002-100221021 | None:intergenic | 45.0% |
| ! | GAAGTATCTGTAGGAAGTGC+AGG | + | chr3.4:100221315-100221334 | None:intergenic | 45.0% |
| ! | GGTGTTATCGATCAAACCAG+GGG | - | chr3.4:100221002-100221021 | MS.gene68124:intron | 45.0% |
| !! | AGTAGCTGGGAAGTATCTGT+AGG | + | chr3.4:100221324-100221343 | None:intergenic | 45.0% |
| !! | CTGGTGTTATCGATCAAACC+AGG | - | chr3.4:100221000-100221019 | MS.gene68124:intron | 45.0% |
| !! | CTTTTGGAGGTGGATGATGA+GGG | + | chr3.4:100220974-100220993 | None:intergenic | 45.0% |
| !! | TTTTGGAGGTGGATGATGAG+GGG | + | chr3.4:100220973-100220992 | None:intergenic | 45.0% |
| AACCAACGCCTGTCCTTGAT+TGG | - | chr3.4:100220787-100220806 | MS.gene68124:CDS | 50.0% | |
| ACATCAGGGGAACCATACCA+TGG | + | chr3.4:100221691-100221710 | None:intergenic | 50.0% | |
| ACATTGCGTGCTCGCTTTGT+TGG | - | chr3.4:100221396-100221415 | MS.gene68124:CDS | 50.0% | |
| ATCGATCCCAATTACTGGCG+TGG | - | chr3.4:100220756-100220775 | MS.gene68124:CDS | 50.0% | |
| CAGGGGTTAGGGAACAATTC+CGG | - | chr3.4:100220630-100220649 | MS.gene68124:intron | 50.0% | |
| CCAATCAGGTCTTGACACCT+TGG | + | chr3.4:100220715-100220734 | None:intergenic | 50.0% | |
| CCCCTGATGTGTTGGAACAA+TGG | - | chr3.4:100221701-100221720 | MS.gene68124:CDS | 50.0% | |
| CCTCATCATCCACCTCCAAA+AGG | - | chr3.4:100220972-100220991 | MS.gene68124:intron | 50.0% | |
| CGATCAAACCAGCGGCATTT+CGG | + | chr3.4:100220740-100220759 | None:intergenic | 50.0% | |
| CGGTGCACTTAACATTTCCC+TGG | - | chr3.4:100221621-100221640 | MS.gene68124:intron | 50.0% | |
| GAAGACGGTGAGCATTTGGA+TGG | + | chr3.4:100220482-100220501 | None:intergenic | 50.0% | |
| GACATCATCTGAACCAACCG+GGG | + | chr3.4:100221662-100221681 | None:intergenic | 50.0% | |
| GAGACTAACCGGGAGAATGA+CGG | + | chr3.4:100220540-100220559 | None:intergenic | 50.0% | |
| GCGAGCACGCAATGTTATGT+TGG | + | chr3.4:100221391-100221410 | None:intergenic | 50.0% | |
| GGAGTGGTAAACTCCATCCA+GGG | + | chr3.4:100221641-100221660 | None:intergenic | 50.0% | |
| GTATGGTTCCCCTGATGTGT+TGG | - | chr3.4:100221693-100221712 | MS.gene68124:CDS | 50.0% | |
| TACCAATCAAGGACAGGCGT+TGG | + | chr3.4:100220792-100220811 | None:intergenic | 50.0% | |
| TGACACCTTGGCAACAACTG+TGG | + | chr3.4:100220703-100220722 | None:intergenic | 50.0% | |
| TGATGCTGTTCAAGAGGCCA+TGG | - | chr3.4:100220827-100220846 | MS.gene68124:CDS | 50.0% | |
| TGTGGGCAAGCAGATGTATG+GGG | - | chr3.4:100221562-100221581 | MS.gene68124:intron | 50.0% | |
| TGTTGGCCAAGGATACAAGC+AGG | - | chr3.4:100221413-100221432 | MS.gene68124:CDS | 50.0% | |
| ! | AGAGTGCCACGCCAGTAATT+GGG | + | chr3.4:100220765-100220784 | None:intergenic | 50.0% |
| ! | ATAACACCAGGGACGCCTTT+TGG | + | chr3.4:100220990-100221009 | None:intergenic | 50.0% |
| ! | ATTCAAGGGGCTCCCCTTTT+TGG | - | chr3.4:100221267-100221286 | MS.gene68124:CDS | 50.0% |
| ! | CCAAGGTGTCAAGACCTGAT+TGG | - | chr3.4:100220712-100220731 | MS.gene68124:intron | 50.0% |
| ! | TCATTGATTGGTCACTCGGC+TGG | - | chr3.4:100220876-100220895 | MS.gene68124:CDS | 50.0% |
| ! | TTGAGGTGAGGGGTGTAAAC+AGG | + | chr3.4:100221062-100221081 | None:intergenic | 50.0% |
| !! | AAGAGTGCCACGCCAGTAAT+TGG | + | chr3.4:100220766-100220785 | None:intergenic | 50.0% |
| !! | CCTTTTGGAGGTGGATGATG+AGG | + | chr3.4:100220975-100220994 | None:intergenic | 50.0% |
| ACTAACCGGGAGAATGACGG+CGG | + | chr3.4:100220537-100220556 | None:intergenic | 55.0% | |
| AGTCTCCTCGGGAAGTAGCT+GGG | + | chr3.4:100221337-100221356 | None:intergenic | 55.0% | |
| CAAGCAGATGTATGGGGCGA+TGG | - | chr3.4:100221568-100221587 | MS.gene68124:intron | 55.0% | |
| CGGAATTGTTCCCTAACCCC+TGG | + | chr3.4:100220632-100220651 | None:intergenic | 55.0% | |
| CGTGTCCACAGTTGTTGCCA+AGG | - | chr3.4:100220695-100220714 | MS.gene68124:intron | 55.0% | |
| CTCCAGCTTCTGGTAGTCAC+CGG | + | chr3.4:100220652-100220671 | None:intergenic | 55.0% | |
| GGATGGAGTTTACCACTCCC+CGG | - | chr3.4:100221642-100221661 | MS.gene68124:CDS | 55.0% | |
| GGGAGTGGTAAACTCCATCC+AGG | + | chr3.4:100221642-100221661 | None:intergenic | 55.0% | |
| TACTTCCCAGCTACTTCCCG+AGG | - | chr3.4:100221329-100221348 | MS.gene68124:CDS | 55.0% | |
| TCAGAGTTGCCTCCAGCTTC+TGG | + | chr3.4:100220662-100220681 | None:intergenic | 55.0% | |
| TTCCGGTGACTACCAGAAGC+TGG | - | chr3.4:100220647-100220666 | MS.gene68124:intron | 55.0% | |
| ! | GGAAGTGCAGGCTCAGCATT+TGG | + | chr3.4:100221303-100221322 | None:intergenic | 55.0% |
| ! | TTGATTGGTCACTCGGCTGG+AGG | - | chr3.4:100220879-100220898 | MS.gene68124:CDS | 55.0% |
| !! | CTCAGGAGGTGCTAACTCCA+TGG | + | chr3.4:100220847-100220866 | None:intergenic | 55.0% |
| CAGTCTCCTCGGGAAGTAGC+TGG | + | chr3.4:100221338-100221357 | None:intergenic | 60.0% | |
| CATCTGAACCAACCGGGGAG+TGG | + | chr3.4:100221657-100221676 | None:intergenic | 60.0% | |
| CGGTGACTACCAGAAGCTGG+AGG | - | chr3.4:100220650-100220669 | MS.gene68124:intron | 60.0% | |
| CTAACCGGGAGAATGACGGC+GGG | + | chr3.4:100220536-100220555 | None:intergenic | 60.0% | |
| GCGGCATTTCGGAGCCAATC+AGG | + | chr3.4:100220729-100220748 | None:intergenic | 60.0% | |
| GGAGTTTACCACTCCCCGGT+TGG | - | chr3.4:100221646-100221665 | MS.gene68124:CDS | 60.0% | |
| TTGGTCACTCGGCTGGAGGA+TGG | - | chr3.4:100220883-100220902 | MS.gene68124:CDS | 60.0% | |
| ! | ACACCAGGGACGCCTTTTGG+AGG | + | chr3.4:100220987-100221006 | None:intergenic | 60.0% |
| ! | CGTGCTCGCTTTGTTGGCCA+AGG | - | chr3.4:100221402-100221421 | MS.gene68124:CDS | 60.0% |
| ! | GATTGGCTCCGAAATGCCGC+TGG | - | chr3.4:100220729-100220748 | MS.gene68124:intron | 60.0% |
| GACGGCGGGCCGATAGTTGT+TGG | + | chr3.4:100220522-100220541 | None:intergenic | 65.0% | |
| GGCGGGCCGATAGTTGTTGG+TGG | + | chr3.4:100220519-100220538 | None:intergenic | 65.0% | |
| !! | CCACCTCCAAAAGGCGTCCC+TGG | - | chr3.4:100220981-100221000 | MS.gene68124:intron | 65.0% |
| !! | CCAGGGACGCCTTTTGGAGG+TGG | + | chr3.4:100220984-100221003 | None:intergenic | 65.0% |
| TCGGCCCGCCGTCATTCTCC+CGG | - | chr3.4:100220529-100220548 | MS.gene68124:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 100220437 | 100221744 | 100220437 | ID=MS.gene68124 |
| chr3.4 | mRNA | 100220437 | 100221744 | 100220437 | ID=MS.gene68124.t1;Parent=MS.gene68124 |
| chr3.4 | exon | 100221631 | 100221744 | 100221631 | ID=MS.gene68124.t1.exon1;Parent=MS.gene68124.t1 |
| chr3.4 | CDS | 100221631 | 100221744 | 100221631 | ID=cds.MS.gene68124.t1;Parent=MS.gene68124.t1 |
| chr3.4 | exon | 100221079 | 100221548 | 100221079 | ID=MS.gene68124.t1.exon2;Parent=MS.gene68124.t1 |
| chr3.4 | CDS | 100221079 | 100221548 | 100221079 | ID=cds.MS.gene68124.t1;Parent=MS.gene68124.t1 |
| chr3.4 | exon | 100220747 | 100220918 | 100220747 | ID=MS.gene68124.t1.exon3;Parent=MS.gene68124.t1 |
| chr3.4 | CDS | 100220747 | 100220918 | 100220747 | ID=cds.MS.gene68124.t1;Parent=MS.gene68124.t1 |
| chr3.4 | exon | 100220437 | 100220622 | 100220437 | ID=MS.gene68124.t1.exon4;Parent=MS.gene68124.t1 |
| chr3.4 | CDS | 100220437 | 100220622 | 100220437 | ID=cds.MS.gene68124.t1;Parent=MS.gene68124.t1 |
| Gene Sequence |
| Protein sequence |
