AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71151

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71151.t1 MTR_0047s0040 96.107 411 16 0 9 419 26 436 0.0 810
MS.gene71151.t1 MTR_7g114700 54.813 374 139 10 10 359 39 406 6.61e-118 351
MS.gene71151.t1 MTR_1g051810 32.970 367 192 10 9 348 22 361 1.71e-37 140
MS.gene71151.t1 MTR_4g087420 30.311 386 203 14 83 410 145 522 2.81e-34 134
MS.gene71151.t1 MTR_1g066800 31.229 301 145 9 84 331 116 407 5.78e-30 121
MS.gene71151.t1 MTR_1g066800 31.229 301 145 9 84 331 121 412 7.06e-30 120
MS.gene71151.t1 MTR_7g100790 32.857 350 147 16 84 363 108 439 2.71e-28 116
MS.gene71151.t1 MTR_6g033415 32.292 288 152 8 83 331 106 389 8.29e-28 114
MS.gene71151.t1 MTR_8g024540 36.313 179 89 6 83 240 126 300 1.74e-23 103
MS.gene71151.t1 MTR_1g095740 32.558 172 107 3 75 237 132 303 2.33e-23 102
MS.gene71151.t1 MTR_4g050480 28.889 360 197 12 83 409 96 429 2.56e-21 95.9
MS.gene71151.t1 MTR_4g050480 28.889 360 197 12 83 409 95 428 2.74e-21 95.9
MS.gene71151.t1 MTR_1g103070 32.453 265 147 11 80 339 132 369 9.72e-21 94.4
MS.gene71151.t1 MTR_3g091560 28.571 273 163 6 84 340 112 368 1.23e-19 90.9
MS.gene71151.t1 MTR_1g007920 27.707 314 175 10 83 351 121 427 2.45e-19 90.1
MS.gene71151.t1 MTR_1g007920 27.707 314 175 10 83 351 96 402 2.79e-19 90.1
MS.gene71151.t1 MTR_8g102400 41.129 124 53 3 30 142 56 170 7.11e-19 88.6
MS.gene71151.t1 MTR_3g104570 29.703 202 114 5 73 251 80 276 1.63e-17 84.7
MS.gene71151.t1 MTR_0019s0070 27.523 327 149 15 75 339 106 406 6.42e-17 82.8
MS.gene71151.t1 MTR_1g101330 33.333 171 95 5 10 163 26 194 1.14e-16 82.0
MS.gene71151.t1 MTR_2g015370 33.908 174 82 4 82 237 61 219 1.42e-16 80.1
MS.gene71151.t1 MTR_4g102840 28.912 294 173 8 78 339 82 371 4.57e-16 80.1
MS.gene71151.t1 MTR_1g041430 62.069 58 22 0 79 136 106 163 5.87e-16 79.7
MS.gene71151.t1 MTR_8g014580 47.500 80 42 0 83 162 125 204 2.26e-15 77.8
MS.gene71151.t1 MTR_4g108140 37.615 109 63 1 34 142 54 157 2.36e-15 78.6
MS.gene71151.t1 MTR_4g108140 37.615 109 63 1 34 142 55 158 2.61e-15 78.2
MS.gene71151.t1 MTR_7g114870 50.000 66 33 0 86 151 108 173 3.96e-15 77.0
MS.gene71151.t1 MTR_8g074730 34.868 152 74 6 14 156 5 140 4.06e-15 72.4
MS.gene71151.t1 MTR_2g100740 29.801 151 87 2 15 146 9 159 2.26e-14 74.3
MS.gene71151.t1 MTR_2g078210 26.667 210 132 5 47 237 26 232 3.38e-12 67.4
MS.gene71151.t1 MTR_1g023760 42.683 82 45 1 77 156 117 198 5.89e-12 68.2
MS.gene71151.t1 MTR_8g017570 40.000 130 73 2 83 211 89 214 1.91e-11 65.9
MS.gene71151.t1 MTR_2g078210 28.313 166 108 4 80 237 10 172 6.74e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71151.t1 AT5G13460 47.545 448 171 17 9 419 23 443 5.52e-110 331
MS.gene71151.t1 AT2G43680 31.742 356 195 12 82 409 320 655 6.87e-37 142
MS.gene71151.t1 AT2G43680 31.742 356 195 12 82 409 320 655 6.87e-37 142
MS.gene71151.t1 AT2G43680 31.742 356 195 12 82 409 320 655 6.87e-37 142
MS.gene71151.t1 AT2G43680 31.742 356 195 12 82 409 320 655 6.87e-37 142
MS.gene71151.t1 AT2G43680 31.742 356 195 12 82 409 321 656 7.04e-37 142
MS.gene71151.t1 AT3G52290 33.684 285 151 9 80 331 104 383 1.12e-35 136
MS.gene71151.t1 AT3G59690 33.692 279 154 6 82 339 167 435 3.67e-34 133
MS.gene71151.t1 AT3G59690 33.692 279 154 6 82 339 167 435 3.67e-34 133
MS.gene71151.t1 AT5G03960 33.609 363 202 13 9 350 24 368 2.29e-30 121
MS.gene71151.t1 AT5G03960 33.609 363 202 13 9 350 25 369 2.89e-30 121
MS.gene71151.t1 AT5G03960 33.609 363 202 13 9 350 25 369 2.89e-30 121
MS.gene71151.t1 AT5G03040 29.052 327 184 7 53 334 83 406 9.35e-30 120
MS.gene71151.t1 AT5G03040 29.052 327 184 7 53 334 83 406 9.35e-30 120
MS.gene71151.t1 AT5G03040 29.052 327 184 7 53 334 83 406 9.35e-30 120
MS.gene71151.t1 AT3G49260 34.286 175 94 6 86 240 122 295 3.87e-23 101
MS.gene71151.t1 AT3G49260 34.286 175 94 6 86 240 122 295 3.87e-23 101
MS.gene71151.t1 AT3G49260 34.286 175 94 6 86 240 122 295 3.87e-23 101
MS.gene71151.t1 AT1G01110 28.351 388 194 14 75 389 112 488 4.07e-23 102
MS.gene71151.t1 AT3G49260 33.143 175 97 5 86 240 122 296 1.01e-22 100
MS.gene71151.t1 AT4G10640 29.315 365 191 13 8 339 36 366 1.49e-22 99.4
MS.gene71151.t1 AT4G14750 43.925 107 42 2 81 173 102 204 3.33e-20 92.0
MS.gene71151.t1 AT4G00820 31.148 244 125 9 22 237 74 302 4.33e-20 92.8
MS.gene71151.t1 AT4G14750 43.243 111 45 2 81 177 161 267 4.92e-20 92.0
MS.gene71151.t1 AT4G14750 43.243 111 45 2 81 177 161 267 4.98e-20 92.4
MS.gene71151.t1 AT2G26180 29.268 328 185 11 43 332 47 365 5.00e-20 92.0
MS.gene71151.t1 AT1G72670 35.088 171 88 6 83 237 92 255 3.43e-19 89.4
MS.gene71151.t1 AT3G09710 26.923 390 213 12 40 363 60 443 4.48e-19 89.4
MS.gene71151.t1 AT3G09710 27.105 380 211 13 40 363 60 429 5.33e-19 89.4
MS.gene71151.t1 AT1G17480 37.121 132 69 3 83 214 93 210 5.06e-18 85.5
MS.gene71151.t1 AT3G22190 33.511 188 107 5 86 262 90 270 1.46e-17 84.7
MS.gene71151.t1 AT3G22190 33.511 188 107 5 86 262 90 270 1.46e-17 84.7
MS.gene71151.t1 AT3G22190 33.511 188 107 5 86 262 90 270 1.46e-17 84.7
MS.gene71151.t1 AT3G22190 33.511 188 107 5 86 262 90 270 1.46e-17 84.7
MS.gene71151.t1 AT4G23060 29.206 315 153 10 80 361 163 440 1.52e-16 82.0
MS.gene71151.t1 AT2G33990 33.540 161 97 4 84 237 47 204 4.18e-16 78.2
MS.gene71151.t1 AT2G26410 29.231 195 116 5 77 256 141 328 4.22e-16 80.5
MS.gene71151.t1 AT2G26410 29.231 195 116 5 77 256 141 328 4.22e-16 80.5
MS.gene71151.t1 AT3G16490 50.000 66 33 0 82 147 105 170 1.43e-15 78.2
MS.gene71151.t1 AT1G18840 41.228 114 57 4 39 147 64 172 2.09e-15 78.6
MS.gene71151.t1 AT1G18840 41.228 114 57 4 39 147 64 172 2.09e-15 78.6
MS.gene71151.t1 AT1G18840 41.228 114 57 4 39 147 64 172 2.09e-15 78.6
MS.gene71151.t1 AT4G29150 47.436 78 38 1 65 142 115 189 7.78e-15 76.3
MS.gene71151.t1 AT1G74690 46.154 91 31 2 77 152 109 196 8.64e-15 76.6
MS.gene71151.t1 AT1G51960 39.394 99 49 1 86 173 102 200 1.52e-14 75.1
MS.gene71151.t1 AT5G07240 52.542 59 28 0 86 144 108 166 2.08e-14 75.1
MS.gene71151.t1 AT5G07240 52.542 59 28 0 86 144 154 212 2.24e-14 75.1
MS.gene71151.t1 AT5G62070 55.556 54 24 0 85 138 118 171 1.36e-13 72.4
MS.gene71151.t1 AT3G49380 56.897 58 25 0 83 140 109 166 1.78e-13 71.6
MS.gene71151.t1 AT3G15050 32.609 138 88 2 84 220 50 183 6.85e-12 65.9
MS.gene71151.t1 AT3G51380 47.692 65 34 0 83 147 36 100 1.97e-11 60.8
MS.gene71151.t1 AT1G14380 49.153 59 30 0 84 142 94 152 4.66e-11 65.1
MS.gene71151.t1 AT1G14380 49.153 59 30 0 84 142 94 152 4.66e-11 65.1
MS.gene71151.t1 AT1G14380 49.153 59 30 0 84 142 94 152 4.66e-11 65.1
MS.gene71151.t1 AT1G14380 49.153 59 30 0 84 142 94 152 4.77e-11 65.1
MS.gene71151.t1 AT1G14380 46.032 63 34 0 84 146 94 156 4.77e-11 65.1
MS.gene71151.t1 AT1G14380 46.032 63 34 0 84 146 94 156 4.77e-11 65.1
MS.gene71151.t1 AT1G14380 46.032 63 34 0 84 146 94 156 4.77e-11 65.1

Find 74 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAATGGTTGAAGGAAAA+TGG 0.172687 4.1:+57717033 MS.gene71151:CDS
GTTCTAAAGACAAGATAATT+AGG 0.184028 4.1:+57717084 MS.gene71151:CDS
TCTAAAATCGGTGACGAATT+TGG 0.198095 4.1:+57717591 MS.gene71151:CDS
TCAAAATTCAAACTGCCTTT+AGG 0.203753 4.1:+57715991 MS.gene71151:CDS
TCCAATCCTTCAACTGGATT+TGG 0.229739 4.1:-57717654 None:intergenic
CAGATAGCTCACTGCCTAAT+TGG 0.230370 4.1:+57718033 MS.gene71151:CDS
CAAAATTCAAACTGCCTTTA+GGG 0.238522 4.1:+57715992 MS.gene71151:CDS
TTTCTCCTTCTGAAAATATA+AGG 0.247388 4.1:-57715742 None:intergenic
AAAAGAAGGAAATGGATATT+TGG 0.296004 4.1:+57715762 MS.gene71151:CDS
CACTAAGCTTGCCTCTATTA+AGG 0.318000 4.1:-57717923 None:intergenic
TATTCTTTCTCTCTTAATAA+TGG 0.318278 4.1:-57717301 None:intergenic
GAACTTTGTCTATCCCAATT+AGG 0.328904 4.1:-57718047 None:intergenic
ATCTTCAGAATCAGAATGTT+TGG 0.344137 4.1:-57715859 None:intergenic
AAAATCTAGCAGGACTATAA+AGG 0.344857 4.1:+57717995 MS.gene71151:CDS
GCCATGTATGCCGGAGTTGC+CGG 0.349143 4.1:-57717759 None:intergenic
TAGTTCCAAGACCTTGCTTT+TGG 0.367342 4.1:-57717825 None:intergenic
TCCTTGCACAAATCTTTGAT+TGG 0.374460 4.1:-57717007 None:intergenic
AGAAGGAGAAAAGAAGGAAA+TGG 0.396134 4.1:+57715754 MS.gene71151:CDS
GTATCATTAGCTTCATTTGA+AGG 0.398734 4.1:-57718069 None:intergenic
TACAGCTCACATTCTAAAAT+CGG 0.401386 4.1:+57717579 MS.gene71151:CDS
CCGGAGAGCTTGAAAATGAT+TGG 0.404332 4.1:-57717740 None:intergenic
TAAAACTAGGAGATCTTTGT+TGG 0.405800 4.1:-57717953 None:intergenic
GGTGAATCCAATCCTTCAAC+TGG 0.411569 4.1:-57717660 None:intergenic
AGATAGCTCACTGCCTAATT+GGG 0.412832 4.1:+57718034 MS.gene71151:CDS
TCAAATGGTTGAAGGAAAAT+GGG 0.421400 4.1:+57717034 MS.gene71151:CDS
TCCAAATCCAGTTGAAGGAT+TGG 0.423367 4.1:+57717653 MS.gene71151:CDS
TCAGAAAGAAGTAAAGTGAA+TGG 0.437880 4.1:+57717477 MS.gene71151:CDS
AAAATTCTTTAATCTCCCTC+TGG 0.440216 4.1:-57715962 None:intergenic
TTCTAAAGACAAGATAATTA+GGG 0.440984 4.1:+57717085 MS.gene71151:CDS
CTTAATAGAGGCAAGCTTAG+TGG 0.449370 4.1:+57717924 MS.gene71151:CDS
GAATTTCTTGAAAATAGTAT+TGG 0.453636 4.1:-57717681 None:intergenic
CAAAATCCAAATCCAGTTGA+AGG 0.460055 4.1:+57717648 MS.gene71151:CDS
GAGGTACTGGCTGGAGCAAT+GGG 0.470588 4.1:+57717506 MS.gene71151:CDS
CACAGGAGGAAGTGTTCAAT+AGG 0.472141 4.1:+57717711 MS.gene71151:CDS
TCCGGCAACTCCGGCATACA+TGG 0.476116 4.1:+57717758 MS.gene71151:CDS
GAAGTAAAGTGAATGGAAGA+TGG 0.476780 4.1:+57717484 MS.gene71151:CDS
GAAGGCCTTGAGGGCGTTGA+AGG 0.479110 4.1:+57716893 MS.gene71151:CDS
TCTTCAGAGTATTCATAGCT+TGG 0.482970 4.1:-57716962 None:intergenic
AACAGTGAAGTCCTTAATAG+AGG 0.490528 4.1:+57717912 MS.gene71151:CDS
TGTTCATGGACAGGCAAAGA+AGG 0.491711 4.1:+57716875 MS.gene71151:intron
TTGTGCAAGGAGACTTCAAA+TGG 0.498467 4.1:+57717019 MS.gene71151:CDS
GGAGGTACTGGCTGGAGCAA+TGG 0.509178 4.1:+57717505 MS.gene71151:CDS
ACTCACAAGGTAACCCCTAA+AGG 0.511074 4.1:-57716006 None:intergenic
GTTCACCAAAAGCAAGGTCT+TGG 0.512945 4.1:+57717820 MS.gene71151:CDS
ACAGGCAAAGAAGGCCTTGA+GGG 0.514595 4.1:+57716884 MS.gene71151:intron
TTCAAGCTCTCCGGCAACTC+CGG 0.516297 4.1:+57717749 MS.gene71151:CDS
GGATGACAGTACTTTATTGA+AGG 0.531553 4.1:+57717242 MS.gene71151:CDS
GAAGGAAATGGATATTTGGA+AGG 0.532923 4.1:+57715766 MS.gene71151:CDS
AGGAGACTTCAAATGGTTGA+AGG 0.539117 4.1:+57717026 MS.gene71151:CDS
CAGTACTTTATTGAAGGAAG+AGG 0.539274 4.1:+57717248 MS.gene71151:CDS
ACTCAAACAGTCAAAGAAAG+TGG 0.539967 4.1:+57717220 MS.gene71151:CDS
TGAATGGAAGATGGAGGTAC+TGG 0.544699 4.1:+57717493 MS.gene71151:CDS
AAACTTCAAGCTATCATTCG+TGG 0.550272 4.1:+57716924 MS.gene71151:CDS
TCAGTAGCAGCCATGTATGC+CGG 0.554373 4.1:-57717768 None:intergenic
CAGTGCCTATAAAATCTAGC+AGG 0.554989 4.1:+57717985 MS.gene71151:CDS
TGGAAGATGGAGGTACTGGC+TGG 0.555626 4.1:+57717497 MS.gene71151:CDS
CTCAACCTATCAAAATCCAG+AGG 0.560910 4.1:+57715946 MS.gene71151:CDS
AAAATTCAAACTGCCTTTAG+GGG 0.573375 4.1:+57715993 MS.gene71151:CDS
AAAATCGGTGACGAATTTGG+AGG 0.576765 4.1:+57717594 MS.gene71151:CDS
TATTCCCTTCAACGCCCTCA+AGG 0.580755 4.1:-57716898 None:intergenic
GTTGGTGGAGCTGTAATTGA+AGG 0.587261 4.1:-57715807 None:intergenic
ACTGAAATACCCTTAAAACT+AGG 0.588800 4.1:-57717966 None:intergenic
CTCAAACAGTCAAAGAAAGT+GGG 0.591986 4.1:+57717221 MS.gene71151:CDS
AACTTCAAGCTATCATTCGT+GGG 0.601912 4.1:+57716925 MS.gene71151:CDS
AACAATATCAAAAGAAACAG+AGG 0.603713 4.1:+57715827 MS.gene71151:CDS
GTAAAGTGAATGGAAGATGG+AGG 0.607160 4.1:+57717487 MS.gene71151:CDS
AAGGCCTTGAGGGCGTTGAA+GGG 0.613569 4.1:+57716894 MS.gene71151:CDS
AGAACTTGAAGATTTAGACT+CGG 0.617154 4.1:+57717554 MS.gene71151:CDS
TCCAATCAAAGATTTGTGCA+AGG 0.626481 4.1:+57717006 MS.gene71151:CDS
CAACAAGTTCACCAAAAGCA+AGG 0.636655 4.1:+57717814 MS.gene71151:CDS
TCAACCTATCAAAATCCAGA+GGG 0.651212 4.1:+57715947 MS.gene71151:CDS
GACAGGCAAAGAAGGCCTTG+AGG 0.663319 4.1:+57716883 MS.gene71151:intron
AATATCAAAAGAAACAGAGG+AGG 0.669914 4.1:+57715830 MS.gene71151:CDS
ATTGAACACTTCCTCCTGTG+AGG 0.674211 4.1:-57717708 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GGTGTTTAAATTAAAAATAT+AGG + chr4.1:57716311-57716330 MS.gene71151:intron 15.0%
!!! AAAAAAAAAGTATCATAACT+AGG + chr4.1:57716472-57716491 MS.gene71151:intron 15.0%
!!! ATATGATTGTTATTAGAATA+AGG + chr4.1:57716290-57716309 MS.gene71151:intron 15.0%
!! ACAAATAGAGAAAATTGAAA+AGG + chr4.1:57716780-57716799 MS.gene71151:intron 20.0%
!! GAATCAAAAATATATGAGTT+AGG - chr4.1:57717358-57717377 None:intergenic 20.0%
!! GAATTTCTTGAAAATAGTAT+TGG - chr4.1:57717684-57717703 None:intergenic 20.0%
!! TATAACTAAAGCTTATAGTA+AGG - chr4.1:57716846-57716865 None:intergenic 20.0%
!! TATTCTTTCTCTCTTAATAA+TGG - chr4.1:57717304-57717323 None:intergenic 20.0%
!! TTAGTAAGTAAAAGAAACAA+TGG + chr4.1:57716819-57716838 MS.gene71151:intron 20.0%
!!! TGAATTTTCTCATTTTTAGA+TGG + chr4.1:57717197-57717216 MS.gene71151:intron 20.0%
!!! TTATAACATTTTCTTGTTCA+TGG + chr4.1:57716861-57716880 MS.gene71151:intron 20.0%
!!! TTCTAAAGACAAGATAATTA+GGG + chr4.1:57717085-57717104 MS.gene71151:CDS 20.0%
! AAAAAAGAAAGTTGAACTCT+AGG + chr4.1:57716747-57716766 MS.gene71151:intron 25.0%
! AAAAAGAAAGTTGAACTCTA+GGG + chr4.1:57716748-57716767 MS.gene71151:intron 25.0%
! AAAAGAAGGAAATGGATATT+TGG + chr4.1:57715762-57715781 MS.gene71151:CDS 25.0%
! AAATGGACAAAGAAAAATCT+CGG + chr4.1:57716543-57716562 MS.gene71151:intron 25.0%
! AACAATATCAAAAGAAACAG+AGG + chr4.1:57715827-57715846 MS.gene71151:CDS 25.0%
! ATTGAAAAGGAAAGTTGTAA+AGG + chr4.1:57716793-57716812 MS.gene71151:intron 25.0%
! GTTGAAACGTCTTATAAAAA+TGG + chr4.1:57716526-57716545 MS.gene71151:intron 25.0%
! TAGTATATTTAGAGAACATG+TGG + chr4.1:57716595-57716614 MS.gene71151:intron 25.0%
!! GAAAACCTTATATTTTCAGA+AGG + chr4.1:57715737-57715756 MS.gene71151:CDS 25.0%
!! TTTCTCCTTCTGAAAATATA+AGG - chr4.1:57715745-57715764 None:intergenic 25.0%
!!! ATTGATAACTTTTTCTTGCA+AGG - chr4.1:57717879-57717898 None:intergenic 25.0%
!!! GTTCTAAAGACAAGATAATT+AGG + chr4.1:57717084-57717103 MS.gene71151:CDS 25.0%
!!! TCTGTTTCTTTTGATATTGT+TGG - chr4.1:57715828-57715847 None:intergenic 25.0%
AAAATCTAGCAGGACTATAA+AGG + chr4.1:57717995-57718014 MS.gene71151:CDS 30.0%
AAAATTCAAACTGCCTTTAG+GGG + chr4.1:57715993-57716012 MS.gene71151:CDS 30.0%
AAAATTCTTTAATCTCCCTC+TGG - chr4.1:57715965-57715984 None:intergenic 30.0%
AATATCAAAAGAAACAGAGG+AGG + chr4.1:57715830-57715849 MS.gene71151:CDS 30.0%
AATGGACAAAGAAAAATCTC+GGG + chr4.1:57716544-57716563 MS.gene71151:intron 30.0%
ACTGAAATACCCTTAAAACT+AGG - chr4.1:57717969-57717988 None:intergenic 30.0%
AGAACTTGAAGATTTAGACT+CGG + chr4.1:57717554-57717573 MS.gene71151:CDS 30.0%
ATAGGATCAGAATCAATTTG+AGG - chr4.1:57716703-57716722 None:intergenic 30.0%
ATCTTCAGAATCAGAATGTT+TGG - chr4.1:57715862-57715881 None:intergenic 30.0%
CAAAATTCAAACTGCCTTTA+GGG + chr4.1:57715992-57716011 MS.gene71151:CDS 30.0%
CTTTATTGCTGTGATTTAGT+CGG - chr4.1:57716342-57716361 None:intergenic 30.0%
TAAAACTAGGAGATCTTTGT+TGG - chr4.1:57717956-57717975 None:intergenic 30.0%
TCAAAATTCAAACTGCCTTT+AGG + chr4.1:57715991-57716010 MS.gene71151:CDS 30.0%
TCAAATGGTTGAAGGAAAAT+GGG + chr4.1:57717034-57717053 MS.gene71151:CDS 30.0%
TCAGAAAGAAGTAAAGTGAA+TGG + chr4.1:57717477-57717496 MS.gene71151:CDS 30.0%
TGTTATAAACCCACTTAGAT+TGG + chr4.1:57716114-57716133 MS.gene71151:intron 30.0%
TTCAAATGGTTGAAGGAAAA+TGG + chr4.1:57717033-57717052 MS.gene71151:CDS 30.0%
TTTATTGCTGTGATTTAGTC+GGG - chr4.1:57716341-57716360 None:intergenic 30.0%
! AAAGGCAGTTTGAATTTTGA+TGG - chr4.1:57715991-57716010 None:intergenic 30.0%
! ATAGTCCTGCTAGATTTTAT+AGG - chr4.1:57717993-57718012 None:intergenic 30.0%
! ATTTTCAGAAGGAGAAAAGA+AGG + chr4.1:57715748-57715767 MS.gene71151:CDS 30.0%
! GTTTCTTTTGATATTGTTGG+TGG - chr4.1:57715825-57715844 None:intergenic 30.0%
!! TACAGCTCACATTCTAAAAT+CGG + chr4.1:57717579-57717598 MS.gene71151:CDS 30.0%
!!! ACAAAGATCTCCTAGTTTTA+AGG + chr4.1:57717956-57717975 MS.gene71151:CDS 30.0%
!!! CAAAGATCTCCTAGTTTTAA+GGG + chr4.1:57717957-57717976 MS.gene71151:CDS 30.0%
AAACTTCAAGCTATCATTCG+TGG + chr4.1:57716924-57716943 MS.gene71151:CDS 35.0%
AACAGTGAAGTCCTTAATAG+AGG + chr4.1:57717912-57717931 MS.gene71151:CDS 35.0%
AACTTATACAAACCCTACAG+AGG + chr4.1:57717445-57717464 MS.gene71151:intron 35.0%
AACTTCAAGCTATCATTCGT+GGG + chr4.1:57716925-57716944 MS.gene71151:CDS 35.0%
AAGCATTTGAGAGACTGTTT+GGG - chr4.1:57717390-57717409 None:intergenic 35.0%
ACAAAGAAAAATCTCGGGAA+GGG + chr4.1:57716549-57716568 MS.gene71151:intron 35.0%
ACTCAAACAGTCAAAGAAAG+TGG + chr4.1:57717220-57717239 MS.gene71151:CDS 35.0%
AGAAGGAGAAAAGAAGGAAA+TGG + chr4.1:57715754-57715773 MS.gene71151:CDS 35.0%
CAAAATCCAAATCCAGTTGA+AGG + chr4.1:57717648-57717667 MS.gene71151:CDS 35.0%
CAGTACTTTATTGAAGGAAG+AGG + chr4.1:57717248-57717267 MS.gene71151:CDS 35.0%
CTCAAACAGTCAAAGAAAGT+GGG + chr4.1:57717221-57717240 MS.gene71151:CDS 35.0%
GAACTTTGTCTATCCCAATT+AGG - chr4.1:57718050-57718069 None:intergenic 35.0%
GAAGGAAATGGATATTTGGA+AGG + chr4.1:57715766-57715785 MS.gene71151:CDS 35.0%
GAAGTAAAGTGAATGGAAGA+TGG + chr4.1:57717484-57717503 MS.gene71151:CDS 35.0%
GGATGACAGTACTTTATTGA+AGG + chr4.1:57717242-57717261 MS.gene71151:CDS 35.0%
TCAACCTATCAAAATCCAGA+GGG + chr4.1:57715947-57715966 MS.gene71151:CDS 35.0%
TCCAATCAAAGATTTGTGCA+AGG + chr4.1:57717006-57717025 MS.gene71151:CDS 35.0%
TCCTTGCACAAATCTTTGAT+TGG - chr4.1:57717010-57717029 None:intergenic 35.0%
TGATTCTGATCCTATTGTGT+TGG + chr4.1:57716708-57716727 MS.gene71151:intron 35.0%
TTATTGCTGTGATTTAGTCG+GGG - chr4.1:57716340-57716359 None:intergenic 35.0%
! AAAGCATTTGAGAGACTGTT+TGG - chr4.1:57717391-57717410 None:intergenic 35.0%
! ACATTTTCTTGTTCATGGAC+AGG + chr4.1:57716866-57716885 MS.gene71151:intron 35.0%
! CAAGAAATTCTTTTCCTCAC+AGG + chr4.1:57717694-57717713 MS.gene71151:CDS 35.0%
! TCTAAAATCGGTGACGAATT+TGG + chr4.1:57717591-57717610 MS.gene71151:CDS 35.0%
! TCTTCAGAGTATTCATAGCT+TGG - chr4.1:57716965-57716984 None:intergenic 35.0%
AAAATCGGTGACGAATTTGG+AGG + chr4.1:57717594-57717613 MS.gene71151:CDS 40.0%
ACAGCTTGAAGAAACTCACA+AGG - chr4.1:57716022-57716041 None:intergenic 40.0%
ACTAAAGATCATGCCAAAGG+AGG - chr4.1:57716061-57716080 None:intergenic 40.0%
AGATAGCTCACTGCCTAATT+GGG + chr4.1:57718034-57718053 MS.gene71151:CDS 40.0%
AGCACTAAAGATCATGCCAA+AGG - chr4.1:57716064-57716083 None:intergenic 40.0%
AGCATTTGAGAGACTGTTTG+GGG - chr4.1:57717389-57717408 None:intergenic 40.0%
AGGAGACTTCAAATGGTTGA+AGG + chr4.1:57717026-57717045 MS.gene71151:CDS 40.0%
ATCATGCCAAAGGAGGATTT+AGG - chr4.1:57716054-57716073 None:intergenic 40.0%
CAAAGAAAAATCTCGGGAAG+GGG + chr4.1:57716550-57716569 MS.gene71151:intron 40.0%
CAACAAGTTCACCAAAAGCA+AGG + chr4.1:57717814-57717833 MS.gene71151:CDS 40.0%
CACTAAGCTTGCCTCTATTA+AGG - chr4.1:57717926-57717945 None:intergenic 40.0%
CAGTGCCTATAAAATCTAGC+AGG + chr4.1:57717985-57718004 MS.gene71151:CDS 40.0%
CTATAGCCTAAATCCTCCTT+TGG + chr4.1:57716045-57716064 MS.gene71151:intron 40.0%
CTCAACCTATCAAAATCCAG+AGG + chr4.1:57715946-57715965 MS.gene71151:CDS 40.0%
CTTAATAGAGGCAAGCTTAG+TGG + chr4.1:57717924-57717943 MS.gene71151:CDS 40.0%
GACAAAGAAAAATCTCGGGA+AGG + chr4.1:57716548-57716567 MS.gene71151:intron 40.0%
GTAAAGTGAATGGAAGATGG+AGG + chr4.1:57717487-57717506 MS.gene71151:CDS 40.0%
TACGTCCTCAATACCAATTG+AGG - chr4.1:57716630-57716649 None:intergenic 40.0%
TACTTATTCTCTCTCGCAGT+AGG - chr4.1:57716415-57716434 None:intergenic 40.0%
TAGAGAACATGTGGCTGATA+CGG + chr4.1:57716604-57716623 MS.gene71151:intron 40.0%
TATTGCTGTGATTTAGTCGG+GGG - chr4.1:57716339-57716358 None:intergenic 40.0%
TCCAAATCCAGTTGAAGGAT+TGG + chr4.1:57717653-57717672 MS.gene71151:CDS 40.0%
TCCAATCCTTCAACTGGATT+TGG - chr4.1:57717657-57717676 None:intergenic 40.0%
TTGTGCAAGGAGACTTCAAA+TGG + chr4.1:57717019-57717038 MS.gene71151:CDS 40.0%
TTTCCGAAGACCAACACAAT+AGG - chr4.1:57716721-57716740 None:intergenic 40.0%
! AGAAAGTTGAACTCTAGGGA+AGG + chr4.1:57716752-57716771 MS.gene71151:intron 40.0%
! GAAATTCTTTTCCTCACAGG+AGG + chr4.1:57717697-57717716 MS.gene71151:CDS 40.0%
! TAGTTCCAAGACCTTGCTTT+TGG - chr4.1:57717828-57717847 None:intergenic 40.0%
!! ATCTCCCTCTGGATTTTGAT+AGG - chr4.1:57715954-57715973 None:intergenic 40.0%
!! CCAATCATTTTCAAGCTCTC+CGG + chr4.1:57717740-57717759 MS.gene71151:CDS 40.0%
!! GATCCTATTGTGTTGGTCTT+CGG + chr4.1:57716715-57716734 MS.gene71151:intron 40.0%
ACTCACAAGGTAACCCCTAA+AGG - chr4.1:57716009-57716028 None:intergenic 45.0%
AGGTTCTGCCACCAAGATTT+AGG - chr4.1:57716683-57716702 None:intergenic 45.0%
ATTGAACACTTCCTCCTGTG+AGG - chr4.1:57717711-57717730 None:intergenic 45.0%
CAGATAGCTCACTGCCTAAT+TGG + chr4.1:57718033-57718052 MS.gene71151:CDS 45.0%
CCGGAGAGCTTGAAAATGAT+TGG - chr4.1:57717743-57717762 None:intergenic 45.0%
GCATTTGAGAGACTGTTTGG+GGG - chr4.1:57717388-57717407 None:intergenic 45.0%
GGTCTGATAGTTATGGACGA+AGG + chr4.1:57716571-57716590 MS.gene71151:intron 45.0%
GGTGAATCCAATCCTTCAAC+TGG - chr4.1:57717663-57717682 None:intergenic 45.0%
GTTCACCAAAAGCAAGGTCT+TGG + chr4.1:57717820-57717839 MS.gene71151:CDS 45.0%
GTTTCATGTTCGATTCCCTC+CGG + chr4.1:57716179-57716198 MS.gene71151:intron 45.0%
TAACCCACCCAAATTGACAC+CGG - chr4.1:57716201-57716220 None:intergenic 45.0%
TACGGCCTCAATTGGTATTG+AGG + chr4.1:57716622-57716641 MS.gene71151:intron 45.0%
TGTTCATGGACAGGCAAAGA+AGG + chr4.1:57716875-57716894 MS.gene71151:intron 45.0%
TTTAGGCGACGGCATCAAAA+AGG - chr4.1:57716666-57716685 None:intergenic 45.0%
! ATTCCCTCCGGTGTCAATTT+GGG + chr4.1:57716191-57716210 MS.gene71151:intron 45.0%
! GTTGGTGGAGCTGTAATTGA+AGG - chr4.1:57715810-57715829 None:intergenic 45.0%
! TAAACCCACTTAGATTGGCC+TGG + chr4.1:57716119-57716138 MS.gene71151:intron 45.0%
! TGAATGGAAGATGGAGGTAC+TGG + chr4.1:57717493-57717512 MS.gene71151:CDS 45.0%
!! CACAGGAGGAAGTGTTCAAT+AGG + chr4.1:57717711-57717730 MS.gene71151:CDS 45.0%
!! TTAGATTGGCCTGGTGGTAT+TGG + chr4.1:57716128-57716147 MS.gene71151:intron 45.0%
ACAGGCAAAGAAGGCCTTGA+GGG + chr4.1:57716884-57716903 MS.gene71151:intron 50.0%
ACCACCAGGCCAATCTAAGT+GGG - chr4.1:57716126-57716145 None:intergenic 50.0%
GGGAAGGGGTCTGATAGTTA+TGG + chr4.1:57716564-57716583 MS.gene71151:intron 50.0%
TACCACCAGGCCAATCTAAG+TGG - chr4.1:57716127-57716146 None:intergenic 50.0%
TATTCCCTTCAACGCCCTCA+AGG - chr4.1:57716901-57716920 None:intergenic 50.0%
TCAGTAGCAGCCATGTATGC+CGG - chr4.1:57717771-57717790 None:intergenic 50.0%
TGACTCTGCTGACCTCTGTA+GGG - chr4.1:57717460-57717479 None:intergenic 50.0%
TGATGCCGTCGCCTAAATCT+TGG + chr4.1:57716669-57716688 MS.gene71151:intron 50.0%
TGCCACCAAGATTTAGGCGA+CGG - chr4.1:57716677-57716696 None:intergenic 50.0%
! ACCTGGGAGTGTGCTCTTTA+AGG + chr4.1:57716157-57716176 MS.gene71151:intron 50.0%
! ACCTTAAAGAGCACACTCCC+AGG - chr4.1:57716161-57716180 None:intergenic 50.0%
! GATTCCCTCCGGTGTCAATT+TGG + chr4.1:57716190-57716209 MS.gene71151:intron 50.0%
!! GTGGTATTGGCTTGAGACCT+GGG + chr4.1:57716141-57716160 MS.gene71151:intron 50.0%
CCACCCAAATTGACACCGGA+GGG - chr4.1:57716197-57716216 None:intergenic 55.0%
CTGACTCTGCTGACCTCTGT+AGG - chr4.1:57717461-57717480 None:intergenic 55.0%
GACAGGCAAAGAAGGCCTTG+AGG + chr4.1:57716883-57716902 MS.gene71151:intron 55.0%
GGTCTCAAGCCAATACCACC+AGG - chr4.1:57716140-57716159 None:intergenic 55.0%
GTGGCTGATACGGCCTCAAT+TGG + chr4.1:57716614-57716633 MS.gene71151:intron 55.0%
TGCCGTCGCCTAAATCTTGG+TGG + chr4.1:57716672-57716691 MS.gene71151:intron 55.0%
TTCAAGCTCTCCGGCAACTC+CGG + chr4.1:57717749-57717768 MS.gene71151:CDS 55.0%
! CCTCCGGTGTCAATTTGGGT+GGG + chr4.1:57716195-57716214 MS.gene71151:intron 55.0%
!! AAGGCCTTGAGGGCGTTGAA+GGG + chr4.1:57716894-57716913 MS.gene71151:CDS 55.0%
!! ACCCACTTAGATTGGCCTGG+TGG + chr4.1:57716122-57716141 MS.gene71151:intron 55.0%
!! GAGGTACTGGCTGGAGCAAT+GGG + chr4.1:57717506-57717525 MS.gene71151:CDS 55.0%
!! GGTGGTATTGGCTTGAGACC+TGG + chr4.1:57716140-57716159 MS.gene71151:intron 55.0%
!! TGGAAGATGGAGGTACTGGC+TGG + chr4.1:57717497-57717516 MS.gene71151:CDS 55.0%
CCCACCCAAATTGACACCGG+AGG - chr4.1:57716198-57716217 None:intergenic 60.0%
GCCATGTATGCCGGAGTTGC+CGG - chr4.1:57717762-57717781 None:intergenic 60.0%
TCCGGCAACTCCGGCATACA+TGG + chr4.1:57717758-57717777 MS.gene71151:CDS 60.0%
! CCCTCCGGTGTCAATTTGGG+TGG + chr4.1:57716194-57716213 MS.gene71151:intron 60.0%
!! GAAGGCCTTGAGGGCGTTGA+AGG + chr4.1:57716893-57716912 MS.gene71151:CDS 60.0%
!! GGAGGTACTGGCTGGAGCAA+TGG + chr4.1:57717505-57717524 MS.gene71151:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 57715729 57718079 57715729 ID=MS.gene71151
chr4.1 mRNA 57715729 57718079 57715729 ID=MS.gene71151.t1;Parent=MS.gene71151
chr4.1 exon 57715729 57716022 57715729 ID=MS.gene71151.t1.exon1;Parent=MS.gene71151.t1
chr4.1 CDS 57715729 57716022 57715729 ID=cds.MS.gene71151.t1;Parent=MS.gene71151.t1
chr4.1 exon 57716888 57717106 57716888 ID=MS.gene71151.t1.exon2;Parent=MS.gene71151.t1
chr4.1 CDS 57716888 57717106 57716888 ID=cds.MS.gene71151.t1;Parent=MS.gene71151.t1
chr4.1 exon 57717216 57717347 57717216 ID=MS.gene71151.t1.exon3;Parent=MS.gene71151.t1
chr4.1 CDS 57717216 57717347 57717216 ID=cds.MS.gene71151.t1;Parent=MS.gene71151.t1
chr4.1 exon 57717465 57718079 57717465 ID=MS.gene71151.t1.exon4;Parent=MS.gene71151.t1
chr4.1 CDS 57717465 57718079 57717465 ID=cds.MS.gene71151.t1;Parent=MS.gene71151.t1
Gene Sequence

>MS.gene71151

ATGATAAAGAAAACCTTATATTTTCAGAAGGAGAAAAGAAGGAAATGGATATTTGGAAGGTTAAAGACAAAAAAGTTACCTTCAATTACAGCTCCACCAACAATATCAAAAGAAACAGAGGAGGAAAAAACCAAACATTCTGATTCTGAAGATGCTGTTAGTGCTACTGAAGTTGTTTCAGAATCTAGTTATCAAAATCAAGATAAATATGAAGAATCTCAACCTATCAAAATCCAGAGGGAGATTAAAGAATTTTCAGCCATCAAAATTCAAACTGCCTTTAGGGGTTACCTTGTGAGTTTCTTCAAGCTGTTTTCTATAGCCTAAATCCTCCTTTGGCATGATCTTTAGTGCTAAATTTATGACTCATTGATTCATATTAATTTGTTATAAACCCACTTAGATTGGCCTGGTGGTATTGGCTTGAGACCTGGGAGTGTGCTCTTTAAGGTTTCATGTTCGATTCCCTCCGGTGTCAATTTGGGTGGGTTAACTTAGCTTCTTCAAAAAAATAAAATTACTTTGTTATAACATAGTACAATTAATGATAGAAAAATTGAAATATGATTGTTATTAGAATAAGGTGTTTAAATTAAAAATATAGGATCCCCCGACTAAATCACAGCAATAAAGTTGATAGTGATGTTGAATTTTTTAACAATTGATATTGTTTTACAAATTTACCTACTGCGAGAGAGAATAAGTATATGTTTTCAGTATAATATTTATTACAAATTACAATAAAAAAAAAAGTATCATAACTAGGAGTATATGCTGATAAAGAAATAATTAAGAGAGTTGAAACGTCTTATAAAAATGGACAAAGAAAAATCTCGGGAAGGGGTCTGATAGTTATGGACGAAGGTTAGTATATTTAGAGAACATGTGGCTGATACGGCCTCAATTGGTATTGAGGACGTAGAGACATCAAAAACCTTTTTGATGCCGTCGCCTAAATCTTGGTGGCAGAACCTCAAATTGATTCTGATCCTATTGTGTTGGTCTTCGGAAAAAGAAAAAAAAAGAAAGTTGAACTCTAGGGAAGGTAAAAACAAATAGAGAAAATTGAAAAGGAAAGTTGTAAAGGAAATTAGTAAGTAAAAGAAACAATGGACCTTACTATAAGCTTTAGTTATAACATTTTCTTGTTCATGGACAGGCAAAGAAGGCCTTGAGGGCGTTGAAGGGAATAGTGAAACTTCAAGCTATCATTCGTGGGAGAGCAGTGAGACGCCAAGCTATGAATACTCTGAAGAGCTTGCAGTCAATTGTAAGTATCCAATCAAAGATTTGTGCAAGGAGACTTCAAATGGTTGAAGGAAAATGGGATTATTTTGAAGACGAAGAGATACATAGTTCTAAAGACAAGATAATTAGGGTGAGACAATTTATGATTCAATGCATAGTTCAAACATAAATATCAATTGTTTTGTAGCTGTTATTCTTGTACAATTTATGATTTGAAACATGAATTTTCTCATTTTTAGATGGACTCAAACAGTCAAAGAAAGTGGGATGACAGTACTTTATTGAAGGAAGAGGTAGATGCTTCTTGCATGATCAAGAAAGAAGCCATTATTAAGAGAGAAAGAATAAAAGAATACACATTTAATCATAGAGTAAGCTCCTAACTCATATATTTTTGATTCGTTGTTTCCCCCAAACAGTCTCTCAAATGCTTTTTTTCAGTAGATAAGTACTAAGTGTTCTCGAGCTAACTTATACAAACCCTACAGAGGTCAGCAGAGTCAGAAAGAAGTAAAGTGAATGGAAGATGGAGGTACTGGCTGGAGCAATGGGTAGATACACAACTTTCTAAAAGCAAAGAACTTGAAGATTTAGACTCGGTTTACAGCTCACATTCTAAAATCGGTGACGAATTTGGAGGAAGACAACTTAAGATGAGAAGTAGTACTAGACAAAATCCAAATCCAGTTGAAGGATTGGATTCACCAATACTATTTTCAAGAAATTCTTTTCCTCACAGGAGGAAGTGTTCAATAGGAGAAGACCAATCATTTTCAAGCTCTCCGGCAACTCCGGCATACATGGCTGCTACTGAATCAGCTAAAGCAAAAGCAAGATCAACAAGTTCACCAAAAGCAAGGTCTTGGAACTATGACATGAACTCTGATAGCTATTTATCACCTTGCAAGAAAAAGTTATCAATTGTCTCATCTGTTAACAGTGAAGTCCTTAATAGAGGCAAGCTTAGTGGTTGTAACCAACAAAGATCTCCTAGTTTTAAGGGTATTTCAGTGCCTATAAAATCTAGCAGGACTATAAAGGATCTCAGTATTAATTCAGATAGCTCACTGCCTAATTGGGATAGACAAAGTTCCTTCAAATGA
Protein sequence

>MS.gene71151.t1

MIKKTLYFQKEKRRKWIFGRLKTKKLPSITAPPTISKETEEEKTKHSDSEDAVSATEVVSESSYQNQDKYEESQPIKIQREIKEFSAIKIQTAFRGYLAKKALRALKGIVKLQAIIRGRAVRRQAMNTLKSLQSIVSIQSKICARRLQMVEGKWDYFEDEEIHSSKDKIIRMDSNSQRKWDDSTLLKEEVDASCMIKKEAIIKRERIKEYTFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSVYSSHSKIGDEFGGRQLKMRSSTRQNPNPVEGLDSPILFSRNSFPHRRKCSIGEDQSFSSSPATPAYMAATESAKAKARSTSSPKARSWNYDMNSDSYLSPCKKKLSIVSSVNSEVLNRGKLSGCNQQRSPSFKGISVPIKSSRTIKDLSINSDSSLPNWDRQSSFK