Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72833.t1 | XP_003612602.1 | 88.9 | 307 | 17 | 3 | 1 | 300 | 1 | 297 | 5.40E-139 | 503.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72833.t1 | Q94B60 | 80.1 | 226 | 41 | 1 | 79 | 300 | 67 | 292 | 7.2e-92 | 338.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72833.t1 | G7K6U0 | 88.9 | 307 | 17 | 3 | 1 | 300 | 1 | 297 | 3.9e-139 | 503.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049351 | MS.gene72833 | 0.801557 | 8.51E-49 | -1.69E-46 |
MS.gene049427 | MS.gene72833 | 0.814453 | 1.53E-51 | -1.69E-46 |
MS.gene049614 | MS.gene72833 | 0.845165 | 4.82E-59 | -1.69E-46 |
MS.gene050163 | MS.gene72833 | 0.801573 | 8.45E-49 | -1.69E-46 |
MS.gene050301 | MS.gene72833 | 0.801806 | 7.57E-49 | -1.69E-46 |
MS.gene050767 | MS.gene72833 | 0.8496 | 2.91E-60 | -1.69E-46 |
MS.gene050770 | MS.gene72833 | 0.850461 | 1.67E-60 | -1.69E-46 |
MS.gene05101 | MS.gene72833 | 0.805036 | 1.62E-49 | -1.69E-46 |
MS.gene051666 | MS.gene72833 | 0.827607 | 1.43E-54 | -1.69E-46 |
MS.gene052271 | MS.gene72833 | 0.80856 | 2.92E-50 | -1.69E-46 |
MS.gene052322 | MS.gene72833 | 0.81606 | 6.72E-52 | -1.69E-46 |
MS.gene052326 | MS.gene72833 | 0.826653 | 2.41E-54 | -1.69E-46 |
MS.gene053009 | MS.gene72833 | 0.823893 | 1.08E-53 | -1.69E-46 |
MS.gene053103 | MS.gene72833 | 0.829429 | 5.17E-55 | -1.69E-46 |
MS.gene053104 | MS.gene72833 | 0.820019 | 8.55E-53 | -1.69E-46 |
MS.gene053107 | MS.gene72833 | 0.827642 | 1.40E-54 | -1.69E-46 |
MS.gene053284 | MS.gene72833 | 0.800775 | 1.23E-48 | -1.69E-46 |
MS.gene053285 | MS.gene72833 | 0.816202 | 6.24E-52 | -1.69E-46 |
MS.gene053322 | MS.gene72833 | 0.863198 | 2.95E-64 | -1.69E-46 |
MS.gene054376 | MS.gene72833 | 0.825797 | 3.85E-54 | -1.69E-46 |
MS.gene054802 | MS.gene72833 | 0.827903 | 1.21E-54 | -1.69E-46 |
MS.gene054803 | MS.gene72833 | 0.827978 | 1.16E-54 | -1.69E-46 |
MS.gene054804 | MS.gene72833 | 0.83085 | 2.33E-55 | -1.69E-46 |
MS.gene055397 | MS.gene72833 | 0.804753 | 1.86E-49 | -1.69E-46 |
MS.gene055412 | MS.gene72833 | 0.842856 | 2.00E-58 | -1.69E-46 |
MS.gene055499 | MS.gene72833 | 0.832444 | 9.42E-56 | -1.69E-46 |
MS.gene055636 | MS.gene72833 | 0.816605 | 5.07E-52 | -1.69E-46 |
MS.gene055647 | MS.gene72833 | 0.821361 | 4.21E-53 | -1.69E-46 |
MS.gene05592 | MS.gene72833 | 0.819313 | 1.24E-52 | -1.69E-46 |
MS.gene056374 | MS.gene72833 | 0.831343 | 1.76E-55 | -1.69E-46 |
MS.gene056796 | MS.gene72833 | 0.80543 | 1.34E-49 | -1.69E-46 |
MS.gene056897 | MS.gene72833 | 0.825992 | 3.46E-54 | -1.69E-46 |
MS.gene057011 | MS.gene72833 | 0.859927 | 2.95E-63 | -1.69E-46 |
MS.gene057129 | MS.gene72833 | 0.854805 | 9.64E-62 | -1.69E-46 |
MS.gene057295 | MS.gene72833 | 0.827264 | 1.72E-54 | -1.69E-46 |
MS.gene057331 | MS.gene72833 | 0.815604 | 8.49E-52 | -1.69E-46 |
MS.gene057416 | MS.gene72833 | 0.817601 | 3.03E-52 | -1.69E-46 |
MS.gene058293 | MS.gene72833 | 0.880457 | 5.40E-70 | -1.69E-46 |
MS.gene058323 | MS.gene72833 | 0.855919 | 4.56E-62 | -1.69E-46 |
MS.gene058660 | MS.gene72833 | 0.810269 | 1.25E-50 | -1.69E-46 |
MS.gene058773 | MS.gene72833 | 0.802838 | 4.64E-49 | -1.69E-46 |
MS.gene059326 | MS.gene72833 | 0.800052 | 1.73E-48 | -1.69E-46 |
MS.gene059536 | MS.gene72833 | 0.822341 | 2.50E-53 | -1.69E-46 |
MS.gene059676 | MS.gene72833 | 0.807282 | 5.46E-50 | -1.69E-46 |
MS.gene059695 | MS.gene72833 | 0.801735 | 7.82E-49 | -1.69E-46 |
MS.gene059960 | MS.gene72833 | 0.852173 | 5.49E-61 | -1.69E-46 |
MS.gene060193 | MS.gene72833 | 0.800527 | 1.38E-48 | -1.69E-46 |
MS.gene060356 | MS.gene72833 | 0.813862 | 2.06E-51 | -1.69E-46 |
MS.gene06092 | MS.gene72833 | 0.816924 | 4.30E-52 | -1.69E-46 |
MS.gene061150 | MS.gene72833 | 0.825369 | 4.87E-54 | -1.69E-46 |
MS.gene061200 | MS.gene72833 | 0.852659 | 3.99E-61 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72833.t1 | MTR_5g026840 | 88.925 | 307 | 17 | 3 | 1 | 300 | 1 | 297 | 0.0 | 533 |
MS.gene72833.t1 | MTR_7g082980 | 50.673 | 223 | 98 | 3 | 41 | 263 | 41 | 251 | 1.19e-72 | 226 |
MS.gene72833.t1 | MTR_7g109610 | 48.148 | 189 | 96 | 1 | 96 | 282 | 113 | 301 | 5.37e-57 | 186 |
MS.gene72833.t1 | MTR_1g086940 | 48.677 | 189 | 95 | 1 | 96 | 282 | 116 | 304 | 8.79e-57 | 185 |
MS.gene72833.t1 | MTR_4g075100 | 41.799 | 189 | 109 | 1 | 78 | 265 | 31 | 219 | 1.86e-47 | 159 |
MS.gene72833.t1 | MTR_4g069800 | 41.489 | 188 | 110 | 0 | 78 | 265 | 86 | 273 | 2.21e-47 | 160 |
MS.gene72833.t1 | MTR_4g069800 | 41.808 | 177 | 103 | 0 | 89 | 265 | 65 | 241 | 8.33e-46 | 155 |
MS.gene72833.t1 | MTR_4g034690 | 36.598 | 194 | 116 | 3 | 69 | 261 | 6 | 193 | 5.08e-40 | 139 |
MS.gene72833.t1 | MTR_4g102000 | 33.953 | 215 | 135 | 2 | 55 | 262 | 87 | 301 | 7.46e-38 | 136 |
MS.gene72833.t1 | MTR_0002s0730 | 39.691 | 194 | 112 | 3 | 78 | 267 | 6 | 198 | 4.87e-36 | 129 |
MS.gene72833.t1 | MTR_4g069800 | 40.845 | 142 | 84 | 0 | 78 | 219 | 86 | 227 | 1.54e-31 | 117 |
MS.gene72833.t1 | MTR_1g106550 | 33.708 | 178 | 108 | 2 | 95 | 262 | 159 | 336 | 3.54e-28 | 112 |
MS.gene72833.t1 | MTR_4g099360 | 36.612 | 183 | 108 | 1 | 91 | 265 | 104 | 286 | 1.47e-27 | 108 |
MS.gene72833.t1 | MTR_7g112640 | 30.189 | 265 | 160 | 4 | 30 | 281 | 61 | 313 | 3.78e-27 | 108 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72833.t1 | AT5G45390 | 80.088 | 226 | 41 | 1 | 79 | 300 | 67 | 292 | 1.20e-123 | 355 |
MS.gene72833.t1 | AT1G66670 | 51.596 | 188 | 91 | 0 | 76 | 263 | 70 | 257 | 4.32e-65 | 207 |
MS.gene72833.t1 | AT1G02560 | 52.096 | 167 | 80 | 0 | 96 | 262 | 119 | 285 | 2.71e-58 | 189 |
MS.gene72833.t1 | AT1G11750 | 42.021 | 188 | 109 | 0 | 78 | 265 | 101 | 288 | 1.50e-48 | 164 |
MS.gene72833.t1 | AT1G11750 | 42.021 | 188 | 109 | 0 | 78 | 265 | 83 | 270 | 2.53e-48 | 162 |
MS.gene72833.t1 | AT5G23140 | 41.176 | 187 | 109 | 1 | 78 | 263 | 34 | 220 | 1.28e-47 | 160 |
MS.gene72833.t1 | ATCG00670 | 41.053 | 190 | 104 | 3 | 78 | 261 | 6 | 193 | 2.40e-41 | 142 |
MS.gene72833.t1 | AT1G12410 | 37.209 | 172 | 108 | 0 | 91 | 262 | 89 | 260 | 2.18e-39 | 139 |
MS.gene72833.t1 | AT4G17040 | 40.437 | 183 | 101 | 1 | 91 | 265 | 105 | 287 | 1.62e-37 | 135 |
MS.gene72833.t1 | AT1G09130 | 32.558 | 258 | 154 | 4 | 27 | 264 | 48 | 305 | 6.78e-31 | 118 |
MS.gene72833.t1 | AT1G09130 | 32.558 | 258 | 154 | 4 | 27 | 264 | 48 | 305 | 6.78e-31 | 118 |
MS.gene72833.t1 | AT1G09130 | 32.558 | 258 | 154 | 4 | 27 | 264 | 48 | 305 | 1.39e-30 | 118 |
MS.gene72833.t1 | AT1G49970 | 36.842 | 190 | 110 | 2 | 86 | 265 | 166 | 355 | 2.60e-30 | 118 |
Find 84 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGGTTAAAGTTAGAATCTT+TGG | 0.193531 | 5.1:-17482225 | None:intergenic |
TATGAGTCAGTTGTTGCTTT+TGG | 0.243942 | 5.1:+17482403 | MS.gene72833:CDS |
CCAATTGAAGCGGTGGAATA+TGG | 0.280288 | 5.1:+17489289 | MS.gene72833:CDS |
TTGTGCGAAATTGGGATTTA+GGG | 0.280536 | 5.1:-17482160 | None:intergenic |
GAGGGAGAGGATTGTGTTCT+TGG | 0.280653 | 5.1:+17482346 | MS.gene72833:CDS |
ACGATGCGGTGCAGCTTGTT+AGG | 0.301821 | 5.1:+17488993 | MS.gene72833:CDS |
GTTGTGCGAAATTGGGATTT+AGG | 0.304802 | 5.1:-17482161 | None:intergenic |
TGATTGGAGTTGTGCGAAAT+TGG | 0.314536 | 5.1:-17482169 | None:intergenic |
GGCTAGTATATCTCATCATC+TGG | 0.332567 | 5.1:-17489427 | None:intergenic |
AGCAATCATGATTCGCGTAT+TGG | 0.378635 | 5.1:-17489107 | None:intergenic |
CCATATTCCACCGCTTCAAT+TGG | 0.379663 | 5.1:-17489289 | None:intergenic |
GCAATCATGATTCGCGTATT+GGG | 0.385922 | 5.1:-17489106 | None:intergenic |
ATATGTGGGGTTAGGAAATT+CGG | 0.399875 | 5.1:-17489403 | None:intergenic |
CATAGCTAGCCGCTTACCTT+TGG | 0.401596 | 5.1:-17489083 | None:intergenic |
ATTCTCCCGGTGGTTCTCTC+AGG | 0.405458 | 5.1:+17482465 | MS.gene72833:CDS |
TTTAGGGTTGAAAGAGGAAA+TGG | 0.415942 | 5.1:-17482144 | None:intergenic |
ATCTCATCATCTGGGATATG+TGG | 0.421816 | 5.1:-17489418 | None:intergenic |
AAAAGCTTGATATCTTTAGT+AGG | 0.425124 | 5.1:-17482437 | None:intergenic |
AGACATTTGAAAAGTGATAG+TGG | 0.433505 | 5.1:-17482261 | None:intergenic |
AGGGAGAGGATTGTGTTCTT+GGG | 0.433833 | 5.1:+17482347 | MS.gene72833:CDS |
AGAGATGGAAGGGAAGTTGA+AGG | 0.438406 | 5.1:-17482086 | None:intergenic |
TTCGCCGCAGACGCCGGAAC+GGG | 0.440599 | 5.1:+17482283 | MS.gene72833:CDS |
GATTGGAGTTGTGCGAAATT+GGG | 0.449197 | 5.1:-17482168 | None:intergenic |
GCACCTCTCATAGCCCGTTC+CGG | 0.459160 | 5.1:-17482296 | None:intergenic |
CATCTGGGATATGTGGGGTT+AGG | 0.459650 | 5.1:-17489411 | None:intergenic |
CGATGCGGTGCAGCTTGTTA+GGG | 0.488234 | 5.1:+17488994 | MS.gene72833:CDS |
GTTGTGAGGACGCAGTTGAT+TGG | 0.490594 | 5.1:-17482185 | None:intergenic |
TGGAATATGGAATTATTGAC+GGG | 0.496102 | 5.1:+17489302 | MS.gene72833:CDS |
GACATTTGAAAAGTGATAGT+GGG | 0.498851 | 5.1:-17482260 | None:intergenic |
TCTCCTGCCAGTGCCAGAAA+AGG | 0.502016 | 5.1:+17489351 | MS.gene72833:CDS |
TTAGGGTTGAAAGAGGAAAT+GGG | 0.503293 | 5.1:-17482143 | None:intergenic |
ATCATGATTGCTCAACCACC+TGG | 0.504852 | 5.1:+17489118 | MS.gene72833:CDS |
GTGGAATATGGAATTATTGA+CGG | 0.506529 | 5.1:+17489301 | MS.gene72833:CDS |
TCTCATCATCTGGGATATGT+GGG | 0.518650 | 5.1:-17489417 | None:intergenic |
TTCAAGTGAGCGGCCGGTGA+AGG | 0.524114 | 5.1:-17489227 | None:intergenic |
GATGTATCCACAATTGCAAT+GGG | 0.528030 | 5.1:+17489019 | MS.gene72833:CDS |
GCTTGTCCACTAGCACCTCC+AGG | 0.528362 | 5.1:-17489136 | None:intergenic |
TTGGGATTTAGGGTTGAAAG+AGG | 0.529185 | 5.1:-17482150 | None:intergenic |
GTTAAAGTTAGAATCTTTGG+AGG | 0.532290 | 5.1:-17482222 | None:intergenic |
ATCCTAGGTGGTGGCACCAA+AGG | 0.533029 | 5.1:+17489067 | MS.gene72833:CDS |
AGTTGAAGGATGAGAAAGAG+AGG | 0.534319 | 5.1:-17482072 | None:intergenic |
CTTCGCCGCAGACGCCGGAA+CGG | 0.535662 | 5.1:+17482282 | MS.gene72833:CDS |
TCAACAGCCTCAATTATCCT+AGG | 0.535750 | 5.1:+17489052 | MS.gene72833:CDS |
ATCTAACCTGAGAGAACCAC+CGG | 0.535853 | 5.1:-17482471 | None:intergenic |
GATGAGAAAGAGAGGTTGTG+AGG | 0.537990 | 5.1:-17482064 | None:intergenic |
TGCAATGCCCATTGCAATTG+TGG | 0.538622 | 5.1:-17489026 | None:intergenic |
CAACCACCTGGAGGTGCTAG+TGG | 0.544933 | 5.1:+17489130 | MS.gene72833:CDS |
GGATGTATCCACAATTGCAA+TGG | 0.545256 | 5.1:+17489018 | MS.gene72833:CDS |
AACTTGTTCAAGTGAGCGGC+CGG | 0.548501 | 5.1:-17489233 | None:intergenic |
CCTGCCAGTGCCAGAAAAGG+TGG | 0.557724 | 5.1:+17489354 | MS.gene72833:CDS |
AAGTTCTGAAAGATATCGAT+AGG | 0.559233 | 5.1:+17489251 | MS.gene72833:CDS |
AGAATCATATCTTCCTTCAC+CGG | 0.560830 | 5.1:+17489214 | MS.gene72833:CDS |
ATAGCCCGTTCCGGCGTCTG+CGG | 0.565490 | 5.1:-17482287 | None:intergenic |
GCGTTGTGAGAGAGATGGAA+GGG | 0.566049 | 5.1:-17482096 | None:intergenic |
GCCTCAATTATCCTAGGTGG+TGG | 0.568197 | 5.1:+17489058 | MS.gene72833:CDS |
AGGTGCTGAATCTGATACCA+TGG | 0.570593 | 5.1:+17482313 | MS.gene72833:CDS |
TGCGTTGTGAGAGAGATGGA+AGG | 0.571466 | 5.1:-17482097 | None:intergenic |
TCAGAACTTGTTCAAGTGAG+CGG | 0.571992 | 5.1:-17489237 | None:intergenic |
GGTGCTGAATCTGATACCAT+GGG | 0.575525 | 5.1:+17482314 | MS.gene72833:CDS |
AATGTCTTCGCCGCAGACGC+CGG | 0.575917 | 5.1:+17482277 | MS.gene72833:CDS |
GCTAGTATATCTCATCATCT+GGG | 0.591085 | 5.1:-17489426 | None:intergenic |
TGCGGTGCAGCTTGTTAGGG+CGG | 0.594116 | 5.1:+17488997 | MS.gene72833:CDS |
GGTTAGGAAATTCGGATCAT+CGG | 0.597525 | 5.1:-17489395 | None:intergenic |
TCTGTCTCCAATTGAAGCGG+TGG | 0.605778 | 5.1:+17489282 | MS.gene72833:CDS |
ACGCCGGAACGGGCTATGAG+AGG | 0.609708 | 5.1:+17482293 | MS.gene72833:CDS |
TTAAAGTTAGAATCTTTGGA+GGG | 0.616488 | 5.1:-17482221 | None:intergenic |
GCCACCACCTAGGATAATTG+AGG | 0.619826 | 5.1:-17489059 | None:intergenic |
AGTTCTGAAAGATATCGATA+GGG | 0.622080 | 5.1:+17489252 | MS.gene72833:CDS |
ATATCTGTCTCCAATTGAAG+CGG | 0.641626 | 5.1:+17489279 | MS.gene72833:CDS |
GGAATGCGTTGTGAGAGAGA+TGG | 0.647598 | 5.1:-17482101 | None:intergenic |
CACCGCATCGTAGATAGCCA+TGG | 0.659168 | 5.1:-17488981 | None:intergenic |
CATGCACAACAAGAATAATG+TGG | 0.660731 | 5.1:+17489189 | MS.gene72833:CDS |
TACCTTTGGTGCCACCACCT+AGG | 0.667716 | 5.1:-17489069 | None:intergenic |
GGGTTGAAAGAGGAAATGGG+TGG | 0.670632 | 5.1:-17482140 | None:intergenic |
CTCATCATCTGGGATATGTG+GGG | 0.671388 | 5.1:-17489416 | None:intergenic |
ACAGCCTCAATTATCCTAGG+TGG | 0.682148 | 5.1:+17489055 | MS.gene72833:CDS |
ATGATTGCTCAACCACCTGG+AGG | 0.694109 | 5.1:+17489121 | MS.gene72833:CDS |
TACCATGGCTATCTACGATG+CGG | 0.697296 | 5.1:+17488979 | MS.gene72833:CDS |
GTGGTGGCACCAAAGGTAAG+CGG | 0.702250 | 5.1:+17489074 | MS.gene72833:CDS |
TGTCCACTAGCACCTCCAGG+TGG | 0.704733 | 5.1:-17489133 | None:intergenic |
TCTAACCTGAGAGAACCACC+GGG | 0.719517 | 5.1:-17482470 | None:intergenic |
GGAATATGGAATTATTGACG+GGG | 0.741752 | 5.1:+17489303 | MS.gene72833:CDS |
GTGCTGAATCTGATACCATG+GGG | 0.778316 | 5.1:+17482315 | MS.gene72833:CDS |
TGCTGAATCTGATACCATGG+GGG | 0.805266 | 5.1:+17482316 | MS.gene72833:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 17482056 | 17489447 | 17482056 | ID=MS.gene72833 |
chr5.1 | mRNA | 17482056 | 17489447 | 17482056 | ID=MS.gene72833.t1;Parent=MS.gene72833 |
chr5.1 | exon | 17482056 | 17482486 | 17482056 | ID=MS.gene72833.t1.exon1;Parent=MS.gene72833.t1 |
chr5.1 | CDS | 17482056 | 17482486 | 17482056 | ID=cds.MS.gene72833.t1;Parent=MS.gene72833.t1 |
chr5.1 | exon | 17488976 | 17489447 | 17488976 | ID=MS.gene72833.t1.exon2;Parent=MS.gene72833.t1 |
chr5.1 | CDS | 17488976 | 17489447 | 17488976 | ID=cds.MS.gene72833.t1;Parent=MS.gene72833.t1 |
Gene Sequence |
Protein sequence |