Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75139.t1 | KEH44457.1 | 90.1 | 91 | 9 | 0 | 6 | 96 | 44 | 134 | 3.20E-24 | 120.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75139.t1 | A0A072VRR3 | 90.1 | 91 | 9 | 0 | 6 | 96 | 44 | 134 | 2.3e-24 | 120.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene75139 | 0.817137 | 3.85E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene75139 | 0.820701 | 5.97E-53 | -1.69E-46 |
| MS.gene049419 | MS.gene75139 | -0.826229 | 3.04E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene75139 | 0.814393 | 1.58E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene75139 | 0.800996 | 1.11E-48 | -1.69E-46 |
| MS.gene051597 | MS.gene75139 | 0.830876 | 2.29E-55 | -1.69E-46 |
| MS.gene051676 | MS.gene75139 | 0.802158 | 6.41E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene75139 | 0.83583 | 1.34E-56 | -1.69E-46 |
| MS.gene052108 | MS.gene75139 | 0.800974 | 1.12E-48 | -1.69E-46 |
| MS.gene052685 | MS.gene75139 | 0.800279 | 1.55E-48 | -1.69E-46 |
| MS.gene052954 | MS.gene75139 | 0.810783 | 9.71E-51 | -1.69E-46 |
| MS.gene053006 | MS.gene75139 | 0.83818 | 3.35E-57 | -1.69E-46 |
| MS.gene053298 | MS.gene75139 | 0.810453 | 1.14E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene75139 | 0.801445 | 8.97E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene75139 | 0.828883 | 7.02E-55 | -1.69E-46 |
| MS.gene05415 | MS.gene75139 | 0.803873 | 2.83E-49 | -1.69E-46 |
| MS.gene054222 | MS.gene75139 | 0.805466 | 1.32E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene75139 | 0.822441 | 2.37E-53 | -1.69E-46 |
| MS.gene054657 | MS.gene75139 | 0.816485 | 5.40E-52 | -1.69E-46 |
| MS.gene05469 | MS.gene75139 | 0.812839 | 3.46E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene75139 | 0.820107 | 8.17E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene75139 | 0.80514 | 1.54E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene75139 | 0.822479 | 2.32E-53 | -1.69E-46 |
| MS.gene056776 | MS.gene75139 | 0.833316 | 5.72E-56 | -1.69E-46 |
| MS.gene05690 | MS.gene75139 | 0.802994 | 4.31E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene75139 | 0.84831 | 6.65E-60 | -1.69E-46 |
| MS.gene057208 | MS.gene75139 | 0.859715 | 3.41E-63 | -1.69E-46 |
| MS.gene057598 | MS.gene75139 | 0.808503 | 3.00E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene75139 | 0.816724 | 4.77E-52 | -1.69E-46 |
| MS.gene058159 | MS.gene75139 | 0.804752 | 1.86E-49 | -1.69E-46 |
| MS.gene058223 | MS.gene75139 | -0.800884 | 1.17E-48 | -1.69E-46 |
| MS.gene058279 | MS.gene75139 | 0.80483 | 1.79E-49 | -1.69E-46 |
| MS.gene058355 | MS.gene75139 | 0.814045 | 1.88E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene75139 | 0.803916 | 2.77E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene75139 | 0.813444 | 2.55E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene75139 | 0.804159 | 2.47E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene75139 | -0.822216 | 2.67E-53 | -1.69E-46 |
| MS.gene060259 | MS.gene75139 | 0.806637 | 7.47E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene75139 | 0.823877 | 1.09E-53 | -1.69E-46 |
| MS.gene060879 | MS.gene75139 | 0.821183 | 4.62E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene75139 | 0.822787 | 1.97E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene75139 | 0.821633 | 3.64E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75139.t1 | MTR_1g115255 | 91.209 | 91 | 8 | 0 | 6 | 96 | 32 | 122 | 1.20e-54 | 166 |
| MS.gene75139.t1 | MTR_1g115255 | 91.209 | 91 | 8 | 0 | 6 | 96 | 44 | 134 | 1.33e-54 | 166 |
| MS.gene75139.t1 | MTR_1g115255 | 86.458 | 96 | 8 | 1 | 6 | 96 | 32 | 127 | 4.48e-52 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75139.t1 | AT5G08535 | 48.913 | 92 | 37 | 2 | 6 | 96 | 34 | 116 | 2.72e-15 | 66.2 |
| MS.gene75139.t1 | AT5G08535 | 48.913 | 92 | 37 | 2 | 6 | 96 | 34 | 116 | 2.72e-15 | 66.2 |
| MS.gene75139.t1 | AT5G08535 | 48.913 | 92 | 37 | 2 | 6 | 96 | 34 | 116 | 2.72e-15 | 66.2 |
| MS.gene75139.t1 | AT5G08535 | 48.913 | 92 | 37 | 3 | 6 | 96 | 59 | 141 | 5.71e-15 | 65.9 |
Find 22 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTGCTTATTGTCTCCTT+TGG | 0.305621 | 1.1:-80880788 | None:intergenic |
| GCGCTTTCTTTAGAGAGTTC+TGG | 0.323271 | 1.1:+80883305 | MS.gene75139:CDS |
| AAGAATAATAAACGAGGTTT+GGG | 0.354264 | 1.1:+80880715 | MS.gene75139:CDS |
| CTGCTTATTGTCTCCTTTGG+AGG | 0.363940 | 1.1:-80880785 | None:intergenic |
| AAAGAATAATAAACGAGGTT+TGG | 0.364649 | 1.1:+80880714 | MS.gene75139:CDS |
| TGGAAAGAAGGGACTGGTCT+TGG | 0.385117 | 1.1:+80880134 | MS.gene75139:CDS |
| AAGCCAAAGCACTTTCTAAA+CGG | 0.409716 | 1.1:+80883230 | MS.gene75139:CDS |
| CACCCGTTTAGAAAGTGCTT+TGG | 0.422675 | 1.1:-80883233 | None:intergenic |
| TTGGAGGAATCACCGTGATC+AGG | 0.437824 | 1.1:-80880769 | None:intergenic |
| AAGAAGCATGGTTGGAAAGA+AGG | 0.444986 | 1.1:+80880122 | None:intergenic |
| AGCCAAAGCACTTTCTAAAC+GGG | 0.461909 | 1.1:+80883231 | MS.gene75139:CDS |
| TGGTCTTGGAATCTCTGAGC+AGG | 0.482435 | 1.1:+80880148 | MS.gene75139:CDS |
| TGAAAAGAAGATGCAAGAGA+AGG | 0.518345 | 1.1:+80883273 | MS.gene75139:CDS |
| TTCTTTACACGAGTTTCCAC+AGG | 0.518432 | 1.1:-80880697 | None:intergenic |
| AGAAGCATGGTTGGAAAGAA+GGG | 0.546784 | 1.1:+80880123 | None:intergenic |
| AGCAGATATAGCGAAGAAGA+AGG | 0.552241 | 1.1:+80880738 | MS.gene75139:CDS |
| CTCCAAAGGAGACAATAAGC+AGG | 0.587624 | 1.1:+80880786 | MS.gene75139:CDS |
| CATGGTTGGAAAGAAGGGAC+TGG | 0.614326 | 1.1:+80880128 | None:intergenic |
| GATCACGGTGATTCCTCCAA+AGG | 0.624641 | 1.1:+80880772 | MS.gene75139:CDS |
| ACAGGGTAGATTAGAACCTG+TGG | 0.628498 | 1.1:+80880681 | MS.gene75139:intron |
| AAGGTTGTGAAACCTGATCA+CGG | 0.667061 | 1.1:+80880757 | MS.gene75139:CDS |
| CGTGTAAAGAATAATAAACG+AGG | 0.690122 | 1.1:+80880709 | MS.gene75139:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAATATATTTAAAGTG+GGG | + | chr1.1:80881972-80881991 | MS.gene75139:intron | 10.0% |
| !! | AATAGAATTATGCAAATAAT+AGG | + | chr1.1:80881209-80881228 | MS.gene75139:intron | 15.0% |
| !! | AATTATTAGAAAGAAAATTG+AGG | + | chr1.1:80882330-80882349 | MS.gene75139:intron | 15.0% |
| !! | ATAAAAATAAAAAAGCTGTA+GGG | + | chr1.1:80882676-80882695 | MS.gene75139:intron | 15.0% |
| !! | ATAGAATTATGCAAATAATA+GGG | + | chr1.1:80881210-80881229 | MS.gene75139:intron | 15.0% |
| !! | ATGTGCATTTAAATTAAATT+AGG | - | chr1.1:80880424-80880443 | None:intergenic | 15.0% |
| !! | TATAAAAATAAAAAAGCTGT+AGG | + | chr1.1:80882675-80882694 | MS.gene75139:intron | 15.0% |
| !! | TATGCATTCTTAAAAAAAAA+TGG | + | chr1.1:80881406-80881425 | MS.gene75139:intron | 15.0% |
| !! | TCTTAAAAAAAAATGGAAAA+GGG | + | chr1.1:80881413-80881432 | MS.gene75139:intron | 15.0% |
| !! | TGTGCATTTAAATTAAATTA+GGG | - | chr1.1:80880423-80880442 | None:intergenic | 15.0% |
| !! | TTAAATTAGTATAAGATTGT+AGG | + | chr1.1:80880490-80880509 | MS.gene75139:intron | 15.0% |
| !! | TTCTTAAAAAAAAATGGAAA+AGG | + | chr1.1:80881412-80881431 | MS.gene75139:intron | 15.0% |
| !! | AAACTTCAAAAATAGGAAAT+AGG | + | chr1.1:80882938-80882957 | MS.gene75139:intron | 20.0% |
| !! | AACAATTTACAATAGTAGAA+GGG | + | chr1.1:80880859-80880878 | MS.gene75139:intron | 20.0% |
| !! | AACTACATAACTATGTAAAA+CGG | + | chr1.1:80880883-80880902 | MS.gene75139:intron | 20.0% |
| !! | AAGTAAAGTGAATTAAAAAG+AGG | + | chr1.1:80882175-80882194 | MS.gene75139:intron | 20.0% |
| !! | ACCTCAAAAATATATATGAA+GGG | + | chr1.1:80881499-80881518 | MS.gene75139:intron | 20.0% |
| !! | AGAATATCTTAAAATAAGCA+TGG | + | chr1.1:80882643-80882662 | MS.gene75139:intron | 20.0% |
| !! | ATCATTTGTAATCAAATGAA+TGG | + | chr1.1:80881145-80881164 | MS.gene75139:intron | 20.0% |
| !! | ATGGTAAAAACTTCAAAAAT+AGG | + | chr1.1:80882931-80882950 | MS.gene75139:intron | 20.0% |
| !! | ATTCATTTCTTAGATATGTT+TGG | - | chr1.1:80881655-80881674 | None:intergenic | 20.0% |
| !! | CATATTTAACAATAATGCAA+GGG | + | chr1.1:80883038-80883057 | MS.gene75139:intron | 20.0% |
| !! | CTATCTCAAGATTTAATAAA+TGG | + | chr1.1:80882533-80882552 | MS.gene75139:intron | 20.0% |
| !! | CTCTTCAAATTAAAAAGAAA+TGG | + | chr1.1:80882912-80882931 | MS.gene75139:intron | 20.0% |
| !! | CTTAAAAAAAAATGGAAAAG+GGG | + | chr1.1:80881414-80881433 | MS.gene75139:intron | 20.0% |
| !! | TAACAATTTACAATAGTAGA+AGG | + | chr1.1:80880858-80880877 | MS.gene75139:intron | 20.0% |
| !! | TCAAATTAATTCTTATGTCT+AGG | + | chr1.1:80880389-80880408 | MS.gene75139:intron | 20.0% |
| !! | TCATATTTAACAATAATGCA+AGG | + | chr1.1:80883037-80883056 | MS.gene75139:intron | 20.0% |
| !! | TTAATTTAAATGCACATTCA+GGG | + | chr1.1:80880427-80880446 | MS.gene75139:intron | 20.0% |
| !! | TTGAACTAATAAACACTTTA+CGG | + | chr1.1:80881546-80881565 | MS.gene75139:intron | 20.0% |
| !!! | ACAATTTTATTTTGGTAACA+GGG | + | chr1.1:80880664-80880683 | MS.gene75139:intron | 20.0% |
| !!! | ACTATATTTTGCTTTTACTT+TGG | - | chr1.1:80881797-80881816 | None:intergenic | 20.0% |
| !!! | ATGCTTATTTTAAGATATTC+TGG | - | chr1.1:80882644-80882663 | None:intergenic | 20.0% |
| !!! | CATTTCTTTTTAATTTGAAG+AGG | - | chr1.1:80882914-80882933 | None:intergenic | 20.0% |
| !!! | TCTGATACACAATTTTATTT+TGG | + | chr1.1:80880656-80880675 | MS.gene75139:intron | 20.0% |
| !!! | TTAATTTGATCTTTCAATGA+AGG | - | chr1.1:80880202-80880221 | None:intergenic | 20.0% |
| !!! | TTATTTTATTGAATTTGGTG+AGG | + | chr1.1:80881026-80881045 | MS.gene75139:intron | 20.0% |
| !!! | TTCTCTTATTTGAGTTTAAA+GGG | - | chr1.1:80882065-80882084 | None:intergenic | 20.0% |
| !!! | TTTAATTTAAATGCACATTC+AGG | + | chr1.1:80880426-80880445 | MS.gene75139:intron | 20.0% |
| !!! | TTTTCAGTCATTTGAATTTT+TGG | + | chr1.1:80883119-80883138 | MS.gene75139:intron | 20.0% |
| !!! | TTTTTTTCAGAGAGAAAAAA+GGG | - | chr1.1:80882786-80882805 | None:intergenic | 20.0% |
| ! | AAAGAATAATAAACGAGGTT+TGG | + | chr1.1:80880714-80880733 | MS.gene75139:CDS | 25.0% |
| ! | AAGAATAATAAACGAGGTTT+GGG | + | chr1.1:80880715-80880734 | MS.gene75139:CDS | 25.0% |
| ! | ACCTAAAATAAGAAAACCTT+CGG | - | chr1.1:80880950-80880969 | None:intergenic | 25.0% |
| ! | AGATATACTTTGTTGACATA+TGG | + | chr1.1:80881112-80881131 | MS.gene75139:intron | 25.0% |
| ! | ATAATATGATATCCGTGAAA+GGG | - | chr1.1:80883070-80883089 | None:intergenic | 25.0% |
| ! | GACCTCAAAAATATATATGA+AGG | + | chr1.1:80881498-80881517 | MS.gene75139:intron | 25.0% |
| ! | TAAGATTGTAGGTTAATTGA+TGG | + | chr1.1:80880501-80880520 | MS.gene75139:intron | 25.0% |
| ! | TAATAAATGGCATAACTGTA+AGG | + | chr1.1:80882546-80882565 | MS.gene75139:intron | 25.0% |
| ! | TACAAGAGAAATACTGAAAT+AGG | - | chr1.1:80880600-80880619 | None:intergenic | 25.0% |
| ! | TATAATATGATATCCGTGAA+AGG | - | chr1.1:80883071-80883090 | None:intergenic | 25.0% |
| ! | TCTAAATCATTCTTAATGTC+AGG | - | chr1.1:80882503-80882522 | None:intergenic | 25.0% |
| ! | TCTTATACTAATTTAACCCA+AGG | - | chr1.1:80880486-80880505 | None:intergenic | 25.0% |
| ! | TGACATTAAGAATGATTTAG+AGG | + | chr1.1:80882502-80882521 | MS.gene75139:intron | 25.0% |
| ! | TGACTGAAAATGAAAAACAA+CGG | - | chr1.1:80883109-80883128 | None:intergenic | 25.0% |
| ! | TTCTACCATCTCTATTATAA+AGG | - | chr1.1:80882359-80882378 | None:intergenic | 25.0% |
| !! | CTTTTATATTGAACAACTCT+AGG | + | chr1.1:80882703-80882722 | MS.gene75139:intron | 25.0% |
| !! | GTTCTCTTATTTGAGTTTAA+AGG | - | chr1.1:80882066-80882085 | None:intergenic | 25.0% |
| !!! | AAACCATATATTTGCTATAC+AGG | + | chr1.1:80881347-80881366 | MS.gene75139:intron | 25.0% |
| !!! | CACAATTTTATTTTGGTAAC+AGG | + | chr1.1:80880663-80880682 | MS.gene75139:intron | 25.0% |
| !!! | GTTTTTTTCAGAGAGAAAAA+AGG | - | chr1.1:80882787-80882806 | None:intergenic | 25.0% |
| !!! | TGAAAACAAATCTTTTTGAG+AGG | - | chr1.1:80882208-80882227 | None:intergenic | 25.0% |
| !!! | TGTATTCTGAAACAGTTTTA+GGG | + | chr1.1:80880616-80880635 | MS.gene75139:intron | 25.0% |
| !!! | TTCTTTTTAATTTGAAGAGG+AGG | - | chr1.1:80882911-80882930 | None:intergenic | 25.0% |
| !!! | TTGTATTCTGAAACAGTTTT+AGG | + | chr1.1:80880615-80880634 | MS.gene75139:intron | 25.0% |
| !!! | TTTTTTCAGAGAGAAAAAAG+GGG | - | chr1.1:80882785-80882804 | None:intergenic | 25.0% |
| AAACACTTTACGGTAACTAT+AGG | + | chr1.1:80881556-80881575 | MS.gene75139:intron | 30.0% | |
| AACATAGAGGTGAAAATAAG+AGG | + | chr1.1:80881854-80881873 | MS.gene75139:intron | 30.0% | |
| AATTGCATATTTAGTAGCCT+TGG | + | chr1.1:80880466-80880485 | MS.gene75139:intron | 30.0% | |
| ACAAACACATCATAACATAG+AGG | + | chr1.1:80881841-80881860 | MS.gene75139:intron | 30.0% | |
| AGTCCAATTGTTATAGACAA+AGG | + | chr1.1:80882456-80882475 | MS.gene75139:intron | 30.0% | |
| AGTCGTATTATAAATCTACG+AGG | + | chr1.1:80881244-80881263 | MS.gene75139:intron | 30.0% | |
| ATCCAATTTACTCTTCTTAC+AGG | - | chr1.1:80882429-80882448 | None:intergenic | 30.0% | |
| ATTGAACAACTCTAGGTAAT+TGG | + | chr1.1:80882710-80882729 | MS.gene75139:intron | 30.0% | |
| ATTGCATATTTAGTAGCCTT+GGG | + | chr1.1:80880467-80880486 | MS.gene75139:intron | 30.0% | |
| CAACCTGTATAGCAAATATA+TGG | - | chr1.1:80881353-80881372 | None:intergenic | 30.0% | |
| CATGTGTATGTTTCACTAAA+GGG | + | chr1.1:80882864-80882883 | MS.gene75139:intron | 30.0% | |
| CGTGTAAAGAATAATAAACG+AGG | + | chr1.1:80880709-80880728 | MS.gene75139:CDS | 30.0% | |
| GTAGATTTATAATACGACTC+AGG | - | chr1.1:80881243-80881262 | None:intergenic | 30.0% | |
| GTCCAATTGTTATAGACAAA+GGG | + | chr1.1:80882457-80882476 | MS.gene75139:intron | 30.0% | |
| GTCGTATTATAAATCTACGA+GGG | + | chr1.1:80881245-80881264 | MS.gene75139:intron | 30.0% | |
| GTGTTTGTAGTTTCTAAACT+TGG | - | chr1.1:80881829-80881848 | None:intergenic | 30.0% | |
| GTTTGTCATACAAAGTGATA+GGG | + | chr1.1:80882122-80882141 | MS.gene75139:intron | 30.0% | |
| TAACTATAGGTGTGCATTAA+AGG | + | chr1.1:80881569-80881588 | MS.gene75139:intron | 30.0% | |
| TAATATGATATCCGTGAAAG+GGG | - | chr1.1:80883069-80883088 | None:intergenic | 30.0% | |
| TCATGTGTATGTTTCACTAA+AGG | + | chr1.1:80882863-80882882 | MS.gene75139:intron | 30.0% | |
| TCCAAATTTAATGCCCTTAA+AGG | - | chr1.1:80880362-80880381 | None:intergenic | 30.0% | |
| TGAAAATAAGAGGACCTAAA+GGG | + | chr1.1:80881864-80881883 | MS.gene75139:intron | 30.0% | |
| TGTAAGAAGAGTAAATTGGA+TGG | + | chr1.1:80882428-80882447 | MS.gene75139:intron | 30.0% | |
| TGTTTATATCAGTTCTCCTT+AGG | - | chr1.1:80880531-80880550 | None:intergenic | 30.0% | |
| TTTCACATTTGTCATTCTGA+TGG | + | chr1.1:80882815-80882834 | MS.gene75139:intron | 30.0% | |
| TTTGTCATACAAAGTGATAG+GGG | + | chr1.1:80882123-80882142 | MS.gene75139:intron | 30.0% | |
| ! | ATAAAGATGAGTTGAATGAG+TGG | + | chr1.1:80882270-80882289 | MS.gene75139:intron | 30.0% |
| ! | ATATCTGTCTCTAAGAACAA+AGG | + | chr1.1:80881183-80881202 | MS.gene75139:intron | 30.0% |
| ! | ATTTGATTTCCTGTTGTTGA+TGG | + | chr1.1:80883171-80883190 | MS.gene75139:intron | 30.0% |
| ! | TGGTATAGTACTTGGTAATT+AGG | + | chr1.1:80881056-80881075 | MS.gene75139:intron | 30.0% |
| ! | TTTATTGAATTTGGTGAGGT+GGG | + | chr1.1:80881030-80881049 | MS.gene75139:intron | 30.0% |
| !! | AAAGTTTGCTTTTGTTCTCA+AGG | + | chr1.1:80880819-80880838 | MS.gene75139:intron | 30.0% |
| !! | AAGTTTGCTTTTGTTCTCAA+GGG | + | chr1.1:80880820-80880839 | MS.gene75139:intron | 30.0% |
| !! | ACCTTTAAGGGCATTAAATT+TGG | + | chr1.1:80880358-80880377 | MS.gene75139:intron | 30.0% |
| !! | ATATTTGCTATACAGGTTGA+TGG | + | chr1.1:80881354-80881373 | MS.gene75139:intron | 30.0% |
| !! | CTGAGTTTTTCATTTGGAAT+TGG | + | chr1.1:80880908-80880927 | MS.gene75139:intron | 30.0% |
| !! | GCCCTTCATATATATTTTTG+AGG | - | chr1.1:80881503-80881522 | None:intergenic | 30.0% |
| !! | TTTTATTGAATTTGGTGAGG+TGG | + | chr1.1:80881029-80881048 | MS.gene75139:intron | 30.0% |
| !!! | GTATTCTGAAACAGTTTTAG+GGG | + | chr1.1:80880617-80880636 | MS.gene75139:intron | 30.0% |
| !!! | GTGTATCAGAATTTTTTGCA+AGG | - | chr1.1:80880646-80880665 | None:intergenic | 30.0% |
| AAACCAGCTTTGCTTATGTT+TGG | + | chr1.1:80881310-80881329 | MS.gene75139:intron | 35.0% | |
| AACCAGCTTTGCTTATGTTT+GGG | + | chr1.1:80881311-80881330 | MS.gene75139:intron | 35.0% | |
| AATTGAAGTCCATCAACAAC+AGG | - | chr1.1:80883183-80883202 | None:intergenic | 35.0% | |
| ACTATCCTGTATTGAATCAG+TGG | + | chr1.1:80883007-80883026 | MS.gene75139:intron | 35.0% | |
| CACCTGTAAGAAGAGTAAAT+TGG | + | chr1.1:80882424-80882443 | MS.gene75139:intron | 35.0% | |
| CTACTAAATATGCAATTCCC+TGG | - | chr1.1:80880463-80880482 | None:intergenic | 35.0% | |
| CTATCCTGTATTGAATCAGT+GGG | + | chr1.1:80883008-80883027 | MS.gene75139:intron | 35.0% | |
| CTATCTATCTCTATCTCTCT+TGG | - | chr1.1:80881722-80881741 | None:intergenic | 35.0% | |
| CTCCCTTTGTCTATAACAAT+TGG | - | chr1.1:80882462-80882481 | None:intergenic | 35.0% | |
| GAAAATAAGAGGACCTAAAG+GGG | + | chr1.1:80881865-80881884 | MS.gene75139:intron | 35.0% | |
| GATATCAACTCGAATTACTG+CGG | + | chr1.1:80883141-80883160 | MS.gene75139:intron | 35.0% | |
| GGTAGCCTTTATAATAGAGA+TGG | + | chr1.1:80882351-80882370 | MS.gene75139:intron | 35.0% | |
| GGTTTGTCATACAAAGTGAT+AGG | + | chr1.1:80882121-80882140 | MS.gene75139:intron | 35.0% | |
| GTGAAAATAAGAGGACCTAA+AGG | + | chr1.1:80881863-80881882 | MS.gene75139:intron | 35.0% | |
| TCTCACATTTGTAGTACCTT+GGG | + | chr1.1:80882100-80882119 | MS.gene75139:intron | 35.0% | |
| TGAAAAGAAGATGCAAGAGA+AGG | + | chr1.1:80883273-80883292 | MS.gene75139:CDS | 35.0% | |
| TTCTCACATTTGTAGTACCT+TGG | + | chr1.1:80882099-80882118 | MS.gene75139:intron | 35.0% | |
| TTTGTCATTCTGATGGTACT+TGG | + | chr1.1:80882822-80882841 | MS.gene75139:intron | 35.0% | |
| ! | AAGCCAAAGCACTTTCTAAA+CGG | + | chr1.1:80883230-80883249 | MS.gene75139:CDS | 35.0% |
| ! | GAGAATCTAGAGAGGTTTTA+TGG | + | chr1.1:80881444-80881463 | MS.gene75139:intron | 35.0% |
| ! | GATGGACTTCAATTGATTTC+AGG | + | chr1.1:80883189-80883208 | MS.gene75139:intron | 35.0% |
| ! | TTATTGAATTTGGTGAGGTG+GGG | + | chr1.1:80881031-80881050 | MS.gene75139:intron | 35.0% |
| !! | ATCTAGAGAGGTTTTATGGA+AGG | + | chr1.1:80881448-80881467 | MS.gene75139:intron | 35.0% |
| !!! | GCCGAAGGTTTTCTTATTTT+AGG | + | chr1.1:80880946-80880965 | MS.gene75139:intron | 35.0% |
| AAATTTGCAATAGCTGCCGA+AGG | + | chr1.1:80880931-80880950 | MS.gene75139:intron | 40.0% | |
| AAGGTTGTGAAACCTGATCA+CGG | + | chr1.1:80880757-80880776 | MS.gene75139:CDS | 40.0% | |
| AAGTGCAGAAGTGGCAATAT+TGG | - | chr1.1:80881940-80881959 | None:intergenic | 40.0% | |
| ACGATACTATCATGTCTGTG+CGG | + | chr1.1:80880255-80880274 | MS.gene75139:intron | 40.0% | |
| AGCAGATATAGCGAAGAAGA+AGG | + | chr1.1:80880738-80880757 | MS.gene75139:CDS | 40.0% | |
| AGTGCAGAAGTGGCAATATT+GGG | - | chr1.1:80881939-80881958 | None:intergenic | 40.0% | |
| ATGCCCAAAACACCATAAGT+CGG | - | chr1.1:80882384-80882403 | None:intergenic | 40.0% | |
| ATTCAGGGACTAATTTGACC+AGG | + | chr1.1:80880442-80880461 | MS.gene75139:intron | 40.0% | |
| CACTTTGTATGACAAACCCA+AGG | - | chr1.1:80882119-80882138 | None:intergenic | 40.0% | |
| GAGTCTGCTACAAAGATCAA+TGG | - | chr1.1:80882575-80882594 | None:intergenic | 40.0% | |
| GCAAGATAGAGAATCTAGAG+AGG | + | chr1.1:80881436-80881455 | MS.gene75139:intron | 40.0% | |
| GGCAATATTGGGAGTTCTTA+TGG | - | chr1.1:80881928-80881947 | None:intergenic | 40.0% | |
| GTTAATTGATGGAACGCCTA+AGG | + | chr1.1:80880512-80880531 | MS.gene75139:intron | 40.0% | |
| GTTTGTATGAAGTGCAGAAG+TGG | - | chr1.1:80881949-80881968 | None:intergenic | 40.0% | |
| TACCTGCTTATTGTCTCCTT+TGG | - | chr1.1:80880791-80880810 | None:intergenic | 40.0% | |
| TGTAGCAGACTCTACATAGT+GGG | + | chr1.1:80882583-80882602 | MS.gene75139:intron | 40.0% | |
| TTATAGACAAAGGGAGACCA+AGG | + | chr1.1:80882466-80882485 | MS.gene75139:intron | 40.0% | |
| TTCAGAGAGAAAAAAGGGGA+GGG | - | chr1.1:80882781-80882800 | None:intergenic | 40.0% | |
| TTCAGGGACTAATTTGACCA+GGG | + | chr1.1:80880443-80880462 | MS.gene75139:intron | 40.0% | |
| TTCTTTACACGAGTTTCCAC+AGG | - | chr1.1:80880700-80880719 | None:intergenic | 40.0% | |
| TTGTAGCAGACTCTACATAG+TGG | + | chr1.1:80882582-80882601 | MS.gene75139:intron | 40.0% | |
| TTTCAGAGAGAAAAAAGGGG+AGG | - | chr1.1:80882782-80882801 | None:intergenic | 40.0% | |
| ! | AATCCCGACTTATGGTGTTT+TGG | + | chr1.1:80882377-80882396 | MS.gene75139:intron | 40.0% |
| ! | AGACTCTACATAGTGGGAAA+AGG | + | chr1.1:80882589-80882608 | MS.gene75139:intron | 40.0% |
| ! | AGCCAAAGCACTTTCTAAAC+GGG | + | chr1.1:80883231-80883250 | MS.gene75139:CDS | 40.0% |
| ! | ATCCCGACTTATGGTGTTTT+GGG | + | chr1.1:80882378-80882397 | MS.gene75139:intron | 40.0% |
| ! | GCTTTTGTTCTCAAGGGTTT+TGG | + | chr1.1:80880826-80880845 | MS.gene75139:intron | 40.0% |
| ! | GTCAGGTCTATCATTTTCCT+TGG | - | chr1.1:80882486-80882505 | None:intergenic | 40.0% |
| ! | TATTGAATTTGGTGAGGTGG+GGG | + | chr1.1:80881032-80881051 | MS.gene75139:intron | 40.0% |
| ! | TTAGGTAGTACTAGCTTGTC+AGG | + | chr1.1:80880964-80880983 | MS.gene75139:intron | 40.0% |
| ! | TTGCGACAATCTTTAGAAGC+AGG | + | chr1.1:80881761-80881780 | MS.gene75139:intron | 40.0% |
| !! | ACGGTGCTGAGTTTTTCATT+TGG | + | chr1.1:80880902-80880921 | MS.gene75139:intron | 40.0% |
| ACAGGGTAGATTAGAACCTG+TGG | + | chr1.1:80880681-80880700 | MS.gene75139:intron | 45.0% | |
| ATGGGGGAAGCTACCTTTAA+GGG | + | chr1.1:80880346-80880365 | MS.gene75139:intron | 45.0% | |
| CGATACTATCATGTCTGTGC+GGG | + | chr1.1:80880256-80880275 | MS.gene75139:intron | 45.0% | |
| CTCCAAAGGAGACAATAAGC+AGG | + | chr1.1:80880786-80880805 | MS.gene75139:CDS | 45.0% | |
| CTCCCAAACATAAGCAAAGC+TGG | - | chr1.1:80881316-80881335 | None:intergenic | 45.0% | |
| CTGACATTGTATGCCCCTTT+AGG | - | chr1.1:80881881-80881900 | None:intergenic | 45.0% | |
| CTGCTTATTGTCTCCTTTGG+AGG | - | chr1.1:80880788-80880807 | None:intergenic | 45.0% | |
| GATGGTAGAATCCCGACTTA+TGG | + | chr1.1:80882369-80882388 | MS.gene75139:intron | 45.0% | |
| TCAGAGAGAAAAAAGGGGAG+GGG | - | chr1.1:80882780-80882799 | None:intergenic | 45.0% | |
| TGCCCAAAACACCATAAGTC+GGG | - | chr1.1:80882383-80882402 | None:intergenic | 45.0% | |
| ! | ACGCCTTCAATCAGAAGTGT+CGG | + | chr1.1:80880305-80880324 | MS.gene75139:intron | 45.0% |
| ! | CGACAATCTTTAGAAGCAGG+TGG | + | chr1.1:80881764-80881783 | MS.gene75139:intron | 45.0% |
| ! | CTTCTGATTGAAGGCGTGTT+CGG | - | chr1.1:80880302-80880321 | None:intergenic | 45.0% |
| ! | GCGCTTTCTTTAGAGAGTTC+TGG | + | chr1.1:80883305-80883324 | MS.gene75139:CDS | 45.0% |
| !! | CACCCGTTTAGAAAGTGCTT+TGG | - | chr1.1:80883236-80883255 | None:intergenic | 45.0% |
| !! | CTGTCCCACTGATTCAATAC+AGG | - | chr1.1:80883015-80883034 | None:intergenic | 45.0% |
| !! | AAATTCAATAAAATAAAATA+AGG | - | chr1.1:80881022-80881041 | None:intergenic | 5.0% |
| !! | AATTAAAAATATATTTAAAG+TGG | + | chr1.1:80881970-80881989 | MS.gene75139:intron | 5.0% |
| !!! | ATTAAAAATATATTTAAAGT+GGG | + | chr1.1:80881971-80881990 | MS.gene75139:intron | 5.0% |
| !!! | TTATTTTATTTTATTGAATT+TGG | + | chr1.1:80881021-80881040 | MS.gene75139:intron | 5.0% |
| CAAGGGAAAAGCCCCTTTCA+CGG | + | chr1.1:80883055-80883074 | MS.gene75139:intron | 50.0% | |
| CAGAGAGAAAAAAGGGGAGG+GGG | - | chr1.1:80882779-80882798 | None:intergenic | 50.0% | |
| GATCACGGTGATTCCTCCAA+AGG | + | chr1.1:80880772-80880791 | MS.gene75139:CDS | 50.0% | |
| GATGGGGGAAGCTACCTTTA+AGG | + | chr1.1:80880345-80880364 | MS.gene75139:intron | 50.0% | |
| TTGGAGGAATCACCGTGATC+AGG | - | chr1.1:80880772-80880791 | None:intergenic | 50.0% | |
| ! | GCACCGACACTTCTGATTGA+AGG | - | chr1.1:80880311-80880330 | None:intergenic | 50.0% |
| ! | TGGTCTTGGAATCTCTGAGC+AGG | + | chr1.1:80880148-80880167 | MS.gene75139:CDS | 50.0% |
| !! | GTGGGGGTTGGTATAGTACT+TGG | + | chr1.1:80881048-80881067 | MS.gene75139:intron | 50.0% |
| !! | TGCCTTTGAAGTCCCTGGAT+GGG | + | chr1.1:80880328-80880347 | MS.gene75139:intron | 50.0% |
| !! | TGGAAAGAAGGGACTGGTCT+TGG | + | chr1.1:80880134-80880153 | MS.gene75139:CDS | 50.0% |
| AAAGGTAGCTTCCCCCATCC+AGG | - | chr1.1:80880344-80880363 | None:intergenic | 55.0% | |
| AAGGTAGCTTCCCCCATCCA+GGG | - | chr1.1:80880343-80880362 | None:intergenic | 55.0% | |
| GGGGTGACGTTGCACAATAG+TGG | + | chr1.1:80881991-80882010 | MS.gene75139:intron | 55.0% | |
| ! | GAATTTGGTGAGGTGGGGGT+TGG | + | chr1.1:80881036-80881055 | MS.gene75139:intron | 55.0% |
| !! | CCTTTGAAGTCCCTGGATGG+GGG | + | chr1.1:80880330-80880349 | MS.gene75139:intron | 55.0% |
| !! | GCCTTTGAAGTCCCTGGATG+GGG | + | chr1.1:80880329-80880348 | MS.gene75139:intron | 55.0% |
| !! | GTGCCTTTGAAGTCCCTGGA+TGG | + | chr1.1:80880327-80880346 | MS.gene75139:intron | 55.0% |
| CCCCCATCCAGGGACTTCAA+AGG | - | chr1.1:80880333-80880352 | None:intergenic | 60.0% | |
| !! | GTCGGTGCCTTTGAAGTCCC+TGG | + | chr1.1:80880323-80880342 | MS.gene75139:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 80880129 | 80883342 | 80880129 | ID=MS.gene75139 |
| chr1.1 | mRNA | 80880129 | 80883342 | 80880129 | ID=MS.gene75139.t1;Parent=MS.gene75139 |
| chr1.1 | exon | 80880129 | 80880169 | 80880129 | ID=MS.gene75139.t1.exon1;Parent=MS.gene75139.t1 |
| chr1.1 | CDS | 80880129 | 80880169 | 80880129 | ID=cds.MS.gene75139.t1;Parent=MS.gene75139.t1 |
| chr1.1 | exon | 80880690 | 80880807 | 80880690 | ID=MS.gene75139.t1.exon2;Parent=MS.gene75139.t1 |
| chr1.1 | CDS | 80880690 | 80880807 | 80880690 | ID=cds.MS.gene75139.t1;Parent=MS.gene75139.t1 |
| chr1.1 | exon | 80883211 | 80883342 | 80883211 | ID=MS.gene75139.t1.exon3;Parent=MS.gene75139.t1 |
| chr1.1 | CDS | 80883211 | 80883342 | 80883211 | ID=cds.MS.gene75139.t1;Parent=MS.gene75139.t1 |
| Gene Sequence |
| Protein sequence |
