Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80899.t1 | XP_013451323.1 | 97.8 | 272 | 6 | 0 | 1 | 272 | 4 | 275 | 2.30E-160 | 574.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80899.t1 | Q9ZT29 | 70.7 | 270 | 79 | 0 | 3 | 272 | 2 | 271 | 2.0e-120 | 433.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80899.t1 | A0A072U8F0 | 97.8 | 272 | 6 | 0 | 1 | 272 | 4 | 275 | 1.6e-160 | 574.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene80899 | 0.882478 | 1.01E-70 | -1.69E-46 |
| MS.gene050338 | MS.gene80899 | 0.832976 | 6.95E-56 | -1.69E-46 |
| MS.gene050444 | MS.gene80899 | -0.828549 | 8.45E-55 | -1.69E-46 |
| MS.gene050707 | MS.gene80899 | 0.844286 | 8.30E-59 | -1.69E-46 |
| MS.gene050710 | MS.gene80899 | 0.840315 | 9.36E-58 | -1.69E-46 |
| MS.gene05081 | MS.gene80899 | -0.807564 | 4.75E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene80899 | -0.807661 | 4.53E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene80899 | -0.809774 | 1.60E-50 | -1.69E-46 |
| MS.gene050874 | MS.gene80899 | 0.81648 | 5.41E-52 | -1.69E-46 |
| MS.gene050875 | MS.gene80899 | 0.856023 | 4.26E-62 | -1.69E-46 |
| MS.gene051439 | MS.gene80899 | 0.818896 | 1.54E-52 | -1.69E-46 |
| MS.gene051539 | MS.gene80899 | 0.812747 | 3.63E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene80899 | -0.844413 | 7.68E-59 | -1.69E-46 |
| MS.gene051914 | MS.gene80899 | 0.894366 | 2.64E-75 | -1.69E-46 |
| MS.gene052129 | MS.gene80899 | 0.812574 | 3.96E-51 | -1.69E-46 |
| MS.gene052209 | MS.gene80899 | 0.822715 | 2.04E-53 | -1.69E-46 |
| MS.gene052308 | MS.gene80899 | 0.876563 | 1.26E-68 | -1.69E-46 |
| MS.gene052872 | MS.gene80899 | -0.803587 | 3.25E-49 | -1.69E-46 |
| MS.gene053108 | MS.gene80899 | 0.838787 | 2.34E-57 | -1.69E-46 |
| MS.gene053173 | MS.gene80899 | 0.852379 | 4.80E-61 | -1.69E-46 |
| MS.gene053348 | MS.gene80899 | 0.81682 | 4.54E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene80899 | -0.806835 | 6.78E-50 | -1.69E-46 |
| MS.gene053480 | MS.gene80899 | -0.808095 | 3.67E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene80899 | 0.864051 | 1.61E-64 | -1.69E-46 |
| MS.gene054593 | MS.gene80899 | 0.864314 | 1.33E-64 | -1.69E-46 |
| MS.gene054633 | MS.gene80899 | 0.858998 | 5.60E-63 | -1.69E-46 |
| MS.gene054662 | MS.gene80899 | 0.855746 | 5.13E-62 | -1.69E-46 |
| MS.gene054850 | MS.gene80899 | 0.851382 | 9.20E-61 | -1.69E-46 |
| MS.gene054941 | MS.gene80899 | 0.891196 | 4.95E-74 | -1.69E-46 |
| MS.gene055308 | MS.gene80899 | 0.855829 | 4.85E-62 | -1.69E-46 |
| MS.gene055578 | MS.gene80899 | 0.834895 | 2.30E-56 | -1.69E-46 |
| MS.gene056041 | MS.gene80899 | 0.81959 | 1.07E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene80899 | -0.859724 | 3.39E-63 | -1.69E-46 |
| MS.gene05640 | MS.gene80899 | 0.876034 | 1.92E-68 | -1.69E-46 |
| MS.gene056528 | MS.gene80899 | 0.804389 | 2.21E-49 | -1.69E-46 |
| MS.gene05652 | MS.gene80899 | 0.880662 | 4.56E-70 | -1.69E-46 |
| MS.gene056618 | MS.gene80899 | 0.851659 | 7.69E-61 | -1.69E-46 |
| MS.gene056688 | MS.gene80899 | 0.810283 | 1.25E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene80899 | 0.809393 | 1.93E-50 | -1.69E-46 |
| MS.gene057101 | MS.gene80899 | 0.841556 | 4.42E-58 | -1.69E-46 |
| MS.gene057367 | MS.gene80899 | 0.861267 | 1.16E-63 | -1.69E-46 |
| MS.gene057458 | MS.gene80899 | 0.809307 | 2.02E-50 | -1.69E-46 |
| MS.gene057669 | MS.gene80899 | 0.860595 | 1.85E-63 | -1.69E-46 |
| MS.gene057717 | MS.gene80899 | 0.847249 | 1.30E-59 | -1.69E-46 |
| MS.gene058128 | MS.gene80899 | 0.905113 | 6.05E-80 | -1.69E-46 |
| MS.gene058382 | MS.gene80899 | 0.801479 | 8.83E-49 | -1.69E-46 |
| MS.gene058416 | MS.gene80899 | 0.803235 | 3.84E-49 | -1.69E-46 |
| MS.gene058418 | MS.gene80899 | 0.808826 | 2.56E-50 | -1.69E-46 |
| MS.gene058853 | MS.gene80899 | 0.909226 | 7.20E-82 | -1.69E-46 |
| MS.gene05926 | MS.gene80899 | 0.873072 | 1.95E-67 | -1.69E-46 |
| MS.gene059553 | MS.gene80899 | 0.814017 | 1.91E-51 | -1.69E-46 |
| MS.gene05960 | MS.gene80899 | 0.817946 | 2.53E-52 | -1.69E-46 |
| MS.gene059616 | MS.gene80899 | 0.879473 | 1.21E-69 | -1.69E-46 |
| MS.gene059699 | MS.gene80899 | 0.836913 | 7.08E-57 | -1.69E-46 |
| MS.gene059703 | MS.gene80899 | 0.830545 | 2.76E-55 | -1.69E-46 |
| MS.gene059905 | MS.gene80899 | 0.82835 | 9.44E-55 | -1.69E-46 |
| MS.gene06093 | MS.gene80899 | 0.86226 | 5.75E-64 | -1.69E-46 |
| MS.gene061099 | MS.gene80899 | 0.805504 | 1.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80899.t1 | MTR_6g018820 | 97.794 | 272 | 6 | 0 | 1 | 272 | 4 | 275 | 0.0 | 552 |
| MS.gene80899.t1 | MTR_6g018860 | 78.909 | 275 | 55 | 1 | 1 | 272 | 4 | 278 | 1.53e-165 | 459 |
| MS.gene80899.t1 | MTR_6g018900 | 89.947 | 189 | 19 | 0 | 82 | 270 | 1 | 189 | 2.51e-126 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80899.t1 | AT3G02580 | 70.111 | 271 | 79 | 1 | 2 | 270 | 4 | 274 | 3.89e-144 | 405 |
| MS.gene80899.t1 | AT3G02590 | 66.914 | 269 | 87 | 1 | 4 | 270 | 7 | 275 | 2.09e-136 | 386 |
| MS.gene80899.t1 | AT3G02590 | 70.681 | 191 | 54 | 1 | 82 | 270 | 1 | 191 | 5.04e-99 | 288 |
Find 65 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTACTTTACTTCATTTC+TGG | 0.069797 | 6.3:+14859660 | MS.gene80899:CDS |
| ACTTCATTTCTGGTTTCTTT+TGG | 0.223397 | 6.3:+14859670 | MS.gene80899:CDS |
| CGGAAAATTATGGCCTGTTA+TGG | 0.256109 | 6.3:+14862646 | MS.gene80899:CDS |
| TTGTGGAGTTTGGTATTTAT+TGG | 0.257333 | 6.3:+14861247 | MS.gene80899:CDS |
| ATTGCATTCACGGAAAATTA+TGG | 0.261663 | 6.3:+14862636 | MS.gene80899:CDS |
| CGGTTATTTAGCGATGTATA+TGG | 0.295041 | 6.3:+14861221 | MS.gene80899:CDS |
| TGTGGAGTTTGGTATTTATT+GGG | 0.301537 | 6.3:+14861248 | MS.gene80899:CDS |
| AACCGATATTTGTAAGAATA+TGG | 0.304421 | 6.3:-14861082 | None:intergenic |
| GCACCAAGTGTGCAATAAAA+TGG | 0.308135 | 6.3:-14862574 | None:intergenic |
| ACGACATATCGACATAACTA+TGG | 0.318548 | 6.3:+14862695 | MS.gene80899:CDS |
| TCTTATTCATTGAAGGTGTT+TGG | 0.327394 | 6.3:+14862597 | MS.gene80899:CDS |
| TATATGGTTATTGTGGAGTT+TGG | 0.347055 | 6.3:+14861237 | MS.gene80899:CDS |
| TCCGAGTACTTGACAGAAAT+CGG | 0.355089 | 6.3:+14861147 | MS.gene80899:CDS |
| AGCCATATTCTTACAAATAT+CGG | 0.357919 | 6.3:+14861080 | MS.gene80899:CDS |
| AATACTCTCTCCCCGTTTGC+TGG | 0.366450 | 6.3:+14861345 | MS.gene80899:CDS |
| AATATTCATGATTGCATTCA+CGG | 0.374123 | 6.3:+14862626 | MS.gene80899:CDS |
| CAACCAACATTATTTAATCT+AGG | 0.377005 | 6.3:-14861186 | None:intergenic |
| TGTAGTTACGAAGCCATGTT+TGG | 0.394197 | 6.3:-14859629 | None:intergenic |
| CACTTTGCCTACGTCTTGCT+CGG | 0.395239 | 6.3:-14862765 | None:intergenic |
| TGGTAACCAGCTCCCATAAC+AGG | 0.414380 | 6.3:-14862659 | None:intergenic |
| GTATGGATGGATTGGATGTT+CGG | 0.440878 | 6.3:+14862728 | MS.gene80899:CDS |
| GGAAAATTATGGCCTGTTAT+GGG | 0.443452 | 6.3:+14862647 | MS.gene80899:CDS |
| TTGGTGCTCTTATTCATTGA+AGG | 0.445284 | 6.3:+14862590 | MS.gene80899:CDS |
| TGATGAACTCACCAGCAAAC+GGG | 0.453022 | 6.3:-14861356 | None:intergenic |
| TTATGGCCTGTTATGGGAGC+TGG | 0.456299 | 6.3:+14862653 | MS.gene80899:CDS |
| CGCAATGTTTATCTCCCTAA+AGG | 0.464782 | 6.3:+14859717 | MS.gene80899:CDS |
| TTTCCAACAGTAAATGTAGA+AGG | 0.467553 | 6.3:-14859694 | None:intergenic |
| CTAGATTAAATAATGTTGGT+TGG | 0.478213 | 6.3:+14861187 | MS.gene80899:CDS |
| TTGATGAACTCACCAGCAAA+CGG | 0.488354 | 6.3:-14861357 | None:intergenic |
| AGCGATGTATATGGTTATTG+TGG | 0.500046 | 6.3:+14861230 | MS.gene80899:CDS |
| TTTCCTAGATTAAATAATGT+TGG | 0.500472 | 6.3:+14861183 | MS.gene80899:CDS |
| TCAAGCATTACCACATAGCC+TGG | 0.508235 | 6.3:+14862532 | MS.gene80899:CDS |
| GCATGAAGATATTTGTAAAG+TGG | 0.510724 | 6.3:-14861297 | None:intergenic |
| GGTCCTTCTACATTTACTGT+TGG | 0.512202 | 6.3:+14859691 | MS.gene80899:CDS |
| TTGCTTTGAAAGCCATGCAT+TGG | 0.517901 | 6.3:+14861103 | MS.gene80899:CDS |
| CATCGCTAAATAACCGATGT+AGG | 0.521223 | 6.3:-14861214 | None:intergenic |
| ACTTTGCCTACGTCTTGCTC+GGG | 0.523211 | 6.3:-14862764 | None:intergenic |
| AATGCAATCATGAATATTTG+CGG | 0.526336 | 6.3:-14862621 | None:intergenic |
| GTTTGGAAGAACCTTGGAAG+TGG | 0.528851 | 6.3:-14859612 | None:intergenic |
| AGCCATGTTTGGAAGAACCT+TGG | 0.540963 | 6.3:-14859618 | None:intergenic |
| TTCCAAGGTTCTTCCAAACA+TGG | 0.547286 | 6.3:+14859616 | MS.gene80899:CDS |
| CGACATATCGACATAACTAT+GGG | 0.549179 | 6.3:+14862696 | MS.gene80899:CDS |
| ATTACACCGTATGGATGGAT+TGG | 0.549465 | 6.3:+14862720 | MS.gene80899:CDS |
| ACTATGGGCATTACACCGTA+TGG | 0.549982 | 6.3:+14862711 | MS.gene80899:CDS |
| GTCAAGTACTCGGAAAGAGT+TGG | 0.550740 | 6.3:-14861138 | None:intergenic |
| GCCGATTTCTGTCAAGTACT+CGG | 0.552304 | 6.3:-14861148 | None:intergenic |
| AGTACTTGACAGAAATCGGC+TGG | 0.557300 | 6.3:+14861151 | MS.gene80899:CDS |
| TGGCTTCGTAACTACATTGG+TGG | 0.561043 | 6.3:+14859636 | MS.gene80899:CDS |
| TGTCTTCAATGAAGAGAGTA+CGG | 0.567028 | 6.3:-14859533 | None:intergenic |
| TGGGCATTACACCGTATGGA+TGG | 0.573336 | 6.3:+14862715 | MS.gene80899:CDS |
| AAGTGTGCAATAAAATGGAC+TGG | 0.574144 | 6.3:-14862569 | None:intergenic |
| CTGGAACAATAAACAAAGCC+AGG | 0.574481 | 6.3:-14862550 | None:intergenic |
| TAAGAATATGGCTCTACGTG+AGG | 0.584180 | 6.3:-14861070 | None:intergenic |
| GCTTGAAGTATTCCATCAAG+AGG | 0.592313 | 6.3:-14862515 | None:intergenic |
| ATAAACAAAGCCAGGCTATG+TGG | 0.593129 | 6.3:-14862542 | None:intergenic |
| TTTGGAAGAACCTTGGAAGT+GGG | 0.595848 | 6.3:-14859611 | None:intergenic |
| ACATGGCTTCGTAACTACAT+TGG | 0.599600 | 6.3:+14859633 | MS.gene80899:CDS |
| TCGATATGTCGTATGATGAA+TGG | 0.602742 | 6.3:-14862684 | None:intergenic |
| AAGAATATGGCTCTACGTGA+GGG | 0.616607 | 6.3:-14861069 | None:intergenic |
| GTTGGTTGGATTGCCTACAT+CGG | 0.630807 | 6.3:+14861201 | MS.gene80899:CDS |
| AAGCAAAGTGTACCAATGCA+TGG | 0.633953 | 6.3:-14861115 | None:intergenic |
| GAACATCCAATCCATCCATA+CGG | 0.634908 | 6.3:-14862726 | None:intergenic |
| ATGTCGTATGATGAATGGTA+TGG | 0.646301 | 6.3:-14862679 | None:intergenic |
| GATGAACTCACCAGCAAACG+GGG | 0.648868 | 6.3:-14861355 | None:intergenic |
| CGCGATCCCGAGCAAGACGT+AGG | 0.681471 | 6.3:+14862758 | MS.gene80899:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATTTTTAATATTTTT+TGG | + | chr6.3:14860378-14860397 | MS.gene80899:intron | 0.0% |
| !!! | TAGATTTAAAGTTAAATAAA+TGG | + | chr6.3:14862018-14862037 | MS.gene80899:intron | 10.0% |
| !!! | TTTTTGTTTTAATTTCAAAT+AGG | + | chr6.3:14859776-14859795 | MS.gene80899:intron | 10.0% |
| !!! | TTTTTTTTAAATATTTACAC+AGG | + | chr6.3:14860317-14860336 | MS.gene80899:intron | 10.0% |
| !! | AAAATACTAAATACTTATAC+AGG | + | chr6.3:14860252-14860271 | MS.gene80899:intron | 15.0% |
| !! | AAATACTAAATACTTATACA+GGG | + | chr6.3:14860253-14860272 | MS.gene80899:intron | 15.0% |
| !! | TAACTTTAAATCTAACTTAA+GGG | - | chr6.3:14862012-14862031 | None:intergenic | 15.0% |
| !! | TTAACTTTAAATCTAACTTA+AGG | - | chr6.3:14862013-14862032 | None:intergenic | 15.0% |
| !!! | CATTTTTTTCAAATTATCAT+CGG | - | chr6.3:14859986-14860005 | None:intergenic | 15.0% |
| !!! | TAGGTTTTCTTTTTAATATT+TGG | + | chr6.3:14859795-14859814 | MS.gene80899:intron | 15.0% |
| !!! | TGATTTTTTTTTATTCATCT+TGG | + | chr6.3:14862242-14862261 | MS.gene80899:intron | 15.0% |
| !! | AACAATTAACATCTAACAAT+TGG | - | chr6.3:14860808-14860827 | None:intergenic | 20.0% |
| !! | AATAATGCATGAAGATAAAA+TGG | - | chr6.3:14860451-14860470 | None:intergenic | 20.0% |
| !! | ATAAAATGGTCATTTCAAAA+GGG | - | chr6.3:14860437-14860456 | None:intergenic | 20.0% |
| !! | ATTGTTAGATGTTAATTGTT+TGG | + | chr6.3:14860808-14860827 | MS.gene80899:intron | 20.0% |
| !! | TTTCAAATTATTAGCTATGT+CGG | + | chr6.3:14860706-14860725 | MS.gene80899:intron | 20.0% |
| !! | TTTCCTAGATTAAATAATGT+TGG | + | chr6.3:14861183-14861202 | MS.gene80899:CDS | 20.0% |
| !!! | CTTTTGTTAAAGATGTTATA+TGG | + | chr6.3:14860105-14860124 | MS.gene80899:intron | 20.0% |
| !!! | TCTAGCTCAAAAAAAAAAAA+AGG | - | chr6.3:14859748-14859767 | None:intergenic | 20.0% |
| !!! | TGATTAAAGAAAAAAGTACA+CGG | + | chr6.3:14861894-14861913 | MS.gene80899:intron | 20.0% |
| !!! | TGTGAAAGTTTTAATCTTTT+GGG | + | chr6.3:14859836-14859855 | MS.gene80899:intron | 20.0% |
| !!! | TTGTTTTATCATTTTGCTTT+TGG | + | chr6.3:14860172-14860191 | MS.gene80899:intron | 20.0% |
| !!! | TTTTGGGTTTAATTTGAAAT+GGG | + | chr6.3:14859852-14859871 | MS.gene80899:intron | 20.0% |
| !!! | TTTTTTTGTTGATAAATCTC+AGG | + | chr6.3:14862479-14862498 | MS.gene80899:intron | 20.0% |
| ! | AAATGGTCTATCTTTCAATA+TGG | + | chr6.3:14862035-14862054 | MS.gene80899:intron | 25.0% |
| ! | AACCGATATTTGTAAGAATA+TGG | - | chr6.3:14861085-14861104 | None:intergenic | 25.0% |
| ! | AATATTCATGATTGCATTCA+CGG | + | chr6.3:14862626-14862645 | MS.gene80899:CDS | 25.0% |
| ! | AATGCAATCATGAATATTTG+CGG | - | chr6.3:14862624-14862643 | None:intergenic | 25.0% |
| ! | ACAAACAAATAACATACACA+AGG | - | chr6.3:14860947-14860966 | None:intergenic | 25.0% |
| ! | AGATTATTGTTGTGATTTAG+AGG | - | chr6.3:14861543-14861562 | None:intergenic | 25.0% |
| ! | AGCCATATTCTTACAAATAT+CGG | + | chr6.3:14861080-14861099 | MS.gene80899:CDS | 25.0% |
| ! | ATCTTGTAAAGTTCAAAGAT+GGG | - | chr6.3:14860492-14860511 | None:intergenic | 25.0% |
| ! | CAACCAACATTATTTAATCT+AGG | - | chr6.3:14861189-14861208 | None:intergenic | 25.0% |
| ! | CAACCATTGAAAATTATAAC+TGG | - | chr6.3:14860286-14860305 | None:intergenic | 25.0% |
| ! | CAAGAAAACAATGTTACAAA+AGG | - | chr6.3:14861017-14861036 | None:intergenic | 25.0% |
| ! | CTAGATTAAATAATGTTGGT+TGG | + | chr6.3:14861187-14861206 | MS.gene80899:CDS | 25.0% |
| ! | GATAAAATGGTCATTTCAAA+AGG | - | chr6.3:14860438-14860457 | None:intergenic | 25.0% |
| ! | GTTCATAACCATAAATTCAT+CGG | + | chr6.3:14861565-14861584 | MS.gene80899:intron | 25.0% |
| ! | TTAAAAAACCAAACCAGATA+TGG | - | chr6.3:14862417-14862436 | None:intergenic | 25.0% |
| ! | TTATTTGTTTGTCATTGTCT+CGG | + | chr6.3:14860955-14860974 | MS.gene80899:intron | 25.0% |
| !! | AAGCCAGTTATAATTTTCAA+TGG | + | chr6.3:14860280-14860299 | MS.gene80899:intron | 25.0% |
| !!! | CTTTTGGGTTTAATTTGAAA+TGG | + | chr6.3:14859851-14859870 | MS.gene80899:intron | 25.0% |
| !!! | GTGTGAAAGTTTTAATCTTT+TGG | + | chr6.3:14859835-14859854 | MS.gene80899:intron | 25.0% |
| !!! | TGTTTTAATCACAAGATCAA+GGG | + | chr6.3:14862442-14862461 | MS.gene80899:intron | 25.0% |
| !!! | TTGTTTTAATCACAAGATCA+AGG | + | chr6.3:14862441-14862460 | MS.gene80899:intron | 25.0% |
| ACTCAATAACAGAATCATCA+AGG | - | chr6.3:14861479-14861498 | None:intergenic | 30.0% | |
| ATCATCAAGGATTATCCAAA+CGG | - | chr6.3:14861466-14861485 | None:intergenic | 30.0% | |
| ATCCAAAACACTTTACATTC+TGG | + | chr6.3:14860918-14860937 | MS.gene80899:intron | 30.0% | |
| ATTAGTACATAAGTTCAAGG+AGG | + | chr6.3:14861934-14861953 | MS.gene80899:intron | 30.0% | |
| ATTGCATTCACGGAAAATTA+TGG | + | chr6.3:14862636-14862655 | MS.gene80899:CDS | 30.0% | |
| CATCTTGTAAAGTTCAAAGA+TGG | - | chr6.3:14860493-14860512 | None:intergenic | 30.0% | |
| CATGGTTCAACTACTATAAA+TGG | - | chr6.3:14862374-14862393 | None:intergenic | 30.0% | |
| CTTCTACTTTACTTCATTTC+TGG | + | chr6.3:14859660-14859679 | MS.gene80899:CDS | 30.0% | |
| GCATGAAGATATTTGTAAAG+TGG | - | chr6.3:14861300-14861319 | None:intergenic | 30.0% | |
| GTAAGAAACAGAGAAATGAA+GGG | + | chr6.3:14861620-14861639 | MS.gene80899:intron | 30.0% | |
| GTGAAATCAAACATGAACTA+AGG | - | chr6.3:14860884-14860903 | None:intergenic | 30.0% | |
| GTGATTAGTACATAAGTTCA+AGG | + | chr6.3:14861931-14861950 | MS.gene80899:intron | 30.0% | |
| TAATTGTTTGGTTACACGTT+GGG | + | chr6.3:14860820-14860839 | MS.gene80899:intron | 30.0% | |
| TATATATCAGCATGATCAGT+TGG | - | chr6.3:14860364-14860383 | None:intergenic | 30.0% | |
| TATATGGTTATTGTGGAGTT+TGG | + | chr6.3:14861237-14861256 | MS.gene80899:CDS | 30.0% | |
| TATGTACTAATCACATACGT+AGG | - | chr6.3:14861925-14861944 | None:intergenic | 30.0% | |
| TATGTTGTTGTGTCATACTA+AGG | + | chr6.3:14862183-14862202 | MS.gene80899:intron | 30.0% | |
| TCCATGATATATGATTCAGA+AGG | - | chr6.3:14861788-14861807 | None:intergenic | 30.0% | |
| TCCTTCTGAATCATATATCA+TGG | + | chr6.3:14861784-14861803 | MS.gene80899:intron | 30.0% | |
| TGAACATCTAACAATCTGAT+TGG | - | chr6.3:14860549-14860568 | None:intergenic | 30.0% | |
| TGTGGAGTTTGGTATTTATT+GGG | + | chr6.3:14861248-14861267 | MS.gene80899:CDS | 30.0% | |
| TTAATTGTTTGGTTACACGT+TGG | + | chr6.3:14860819-14860838 | MS.gene80899:intron | 30.0% | |
| TTAGTACATAAGTTCAAGGA+GGG | + | chr6.3:14861935-14861954 | MS.gene80899:intron | 30.0% | |
| TTGTGGAGTTTGGTATTTAT+TGG | + | chr6.3:14861247-14861266 | MS.gene80899:CDS | 30.0% | |
| TTTCCAACAGTAAATGTAGA+AGG | - | chr6.3:14859697-14859716 | None:intergenic | 30.0% | |
| ! | TTCTACAACAGCATTTTGTT+GGG | + | chr6.3:14859561-14859580 | MS.gene80899:CDS | 30.0% |
| ! | TTGTGAAAGATGTCATCTTT+TGG | + | chr6.3:14860204-14860223 | MS.gene80899:intron | 30.0% |
| ! | TTGTTGATAAATCTCAGGTT+TGG | + | chr6.3:14862484-14862503 | MS.gene80899:intron | 30.0% |
| ! | TTTCTACAACAGCATTTTGT+TGG | + | chr6.3:14859560-14859579 | MS.gene80899:CDS | 30.0% |
| !! | AAAAAAAAGGTGTCACCTTT+AGG | - | chr6.3:14859735-14859754 | None:intergenic | 30.0% |
| !! | AAAAAAAGGTGTCACCTTTA+GGG | - | chr6.3:14859734-14859753 | None:intergenic | 30.0% |
| !! | GACTTATGTTTTTCTAGCAA+TGG | + | chr6.3:14860518-14860537 | MS.gene80899:intron | 30.0% |
| !! | TACCAGAATGTAAAGTGTTT+TGG | - | chr6.3:14860923-14860942 | None:intergenic | 30.0% |
| !! | TCTTATTCATTGAAGGTGTT+TGG | + | chr6.3:14862597-14862616 | MS.gene80899:CDS | 30.0% |
| !!! | ACTTCATTTCTGGTTTCTTT+TGG | + | chr6.3:14859670-14859689 | MS.gene80899:CDS | 30.0% |
| !!! | TTTGTTACCTCACTTTTTGT+GGG | + | chr6.3:14859587-14859606 | MS.gene80899:CDS | 30.0% |
| AAAACGCAATGTACATCTCA+GGG | + | chr6.3:14860843-14860862 | MS.gene80899:intron | 35.0% | |
| AACATGAACTAAGGCGATTT+CGG | - | chr6.3:14860875-14860894 | None:intergenic | 35.0% | |
| AAGTGTGCAATAAAATGGAC+TGG | - | chr6.3:14862572-14862591 | None:intergenic | 35.0% | |
| ACACCAAAGTTAGTGATTCT+AGG | + | chr6.3:14861820-14861839 | MS.gene80899:intron | 35.0% | |
| ACGACATATCGACATAACTA+TGG | + | chr6.3:14862695-14862714 | MS.gene80899:CDS | 35.0% | |
| AGCAGACTGAGATAAATCAA+TGG | - | chr6.3:14862153-14862172 | None:intergenic | 35.0% | |
| AGCGATGTATATGGTTATTG+TGG | + | chr6.3:14861230-14861249 | MS.gene80899:CDS | 35.0% | |
| ATGAAACACAGATACAGACA+CGG | - | chr6.3:14860761-14860780 | None:intergenic | 35.0% | |
| ATGTCGTATGATGAATGGTA+TGG | - | chr6.3:14862682-14862701 | None:intergenic | 35.0% | |
| CGACATATCGACATAACTAT+GGG | + | chr6.3:14862696-14862715 | MS.gene80899:CDS | 35.0% | |
| CGGTTATTTAGCGATGTATA+TGG | + | chr6.3:14861221-14861240 | MS.gene80899:CDS | 35.0% | |
| CGTAAGAAACAGAGAAATGA+AGG | + | chr6.3:14861619-14861638 | MS.gene80899:intron | 35.0% | |
| GGAAAATTATGGCCTGTTAT+GGG | + | chr6.3:14862647-14862666 | MS.gene80899:CDS | 35.0% | |
| GGTTCACAACATTAGTGAAA+CGG | + | chr6.3:14861586-14861605 | MS.gene80899:intron | 35.0% | |
| GTCTGAGAGATATTTAGTCT+TGG | + | chr6.3:14860045-14860064 | MS.gene80899:intron | 35.0% | |
| GTTGTGAACCGATGAATTTA+TGG | - | chr6.3:14861576-14861595 | None:intergenic | 35.0% | |
| TCATCAAGGATTATCCAAAC+GGG | - | chr6.3:14861465-14861484 | None:intergenic | 35.0% | |
| TCGATATGTCGTATGATGAA+TGG | - | chr6.3:14862687-14862706 | None:intergenic | 35.0% | |
| TGTCTTCAATGAAGAGAGTA+CGG | - | chr6.3:14859536-14859555 | None:intergenic | 35.0% | |
| TTTAATCACAAGATCAAGGG+CGG | + | chr6.3:14862445-14862464 | MS.gene80899:intron | 35.0% | |
| ! | AGTCCATTTTATTGCACACT+TGG | + | chr6.3:14862571-14862590 | MS.gene80899:CDS | 35.0% |
| ! | ATTTCTCTGTTTCTTACGTG+TGG | - | chr6.3:14861617-14861636 | None:intergenic | 35.0% |
| ! | TTGGTGCTCTTATTCATTGA+AGG | + | chr6.3:14862590-14862609 | MS.gene80899:CDS | 35.0% |
| !! | TGTATTGATTTGAGAGTCCT+AGG | + | chr6.3:14860584-14860603 | MS.gene80899:intron | 35.0% |
| !!! | AAAGTAGTTTTGAGCAGTGT+TGG | - | chr6.3:14861745-14861764 | None:intergenic | 35.0% |
| !!! | CTTTGTTACCTCACTTTTTG+TGG | + | chr6.3:14859586-14859605 | MS.gene80899:CDS | 35.0% |
| !!! | TGTTTTAAAAACCGAACTCG+CGG | + | chr6.3:14862273-14862292 | MS.gene80899:intron | 35.0% |
| AAACGCAATGTACATCTCAG+GGG | + | chr6.3:14860844-14860863 | MS.gene80899:intron | 40.0% | |
| AACCAAACCAGATATGGAAC+TGG | - | chr6.3:14862411-14862430 | None:intergenic | 40.0% | |
| AAGCAAAGTGTACCAATGCA+TGG | - | chr6.3:14861118-14861137 | None:intergenic | 40.0% | |
| ACACCAACAATTCTGATCGA+AGG | - | chr6.3:14860027-14860046 | None:intergenic | 40.0% | |
| ACAGAGAAATGAAGGGAAGA+AGG | + | chr6.3:14861627-14861646 | MS.gene80899:intron | 40.0% | |
| ACATGGCTTCGTAACTACAT+TGG | + | chr6.3:14859633-14859652 | MS.gene80899:CDS | 40.0% | |
| AGTCCAATCTCAAAGGTAGA+GGG | + | chr6.3:14861963-14861982 | MS.gene80899:intron | 40.0% | |
| ATAAACAAAGCCAGGCTATG+TGG | - | chr6.3:14862545-14862564 | None:intergenic | 40.0% | |
| ATTACACCGTATGGATGGAT+TGG | + | chr6.3:14862720-14862739 | MS.gene80899:CDS | 40.0% | |
| CAAAGTTAGTGATTCTAGGC+AGG | + | chr6.3:14861824-14861843 | MS.gene80899:intron | 40.0% | |
| CACAACATTAGTGAAACGGA+AGG | + | chr6.3:14861590-14861609 | MS.gene80899:intron | 40.0% | |
| CATCAAGGATTATCCAAACG+GGG | - | chr6.3:14861464-14861483 | None:intergenic | 40.0% | |
| CATCGCTAAATAACCGATGT+AGG | - | chr6.3:14861217-14861236 | None:intergenic | 40.0% | |
| CCGTAAATCTGCACTAACTA+CGG | + | chr6.3:14862311-14862330 | MS.gene80899:intron | 40.0% | |
| CCGTAGTTAGTGCAGATTTA+CGG | - | chr6.3:14862314-14862333 | None:intergenic | 40.0% | |
| CGCAATGTTTATCTCCCTAA+AGG | + | chr6.3:14859717-14859736 | MS.gene80899:CDS | 40.0% | |
| CGGAAAATTATGGCCTGTTA+TGG | + | chr6.3:14862646-14862665 | MS.gene80899:CDS | 40.0% | |
| CTGCCTAGAATCACTAACTT+TGG | - | chr6.3:14861826-14861845 | None:intergenic | 40.0% | |
| CTGGAACAATAAACAAAGCC+AGG | - | chr6.3:14862553-14862572 | None:intergenic | 40.0% | |
| GAAAACGCAATGTACATCTC+AGG | + | chr6.3:14860842-14860861 | MS.gene80899:intron | 40.0% | |
| GAAATCTGTTGTTGCAGATG+CGG | + | chr6.3:14861044-14861063 | MS.gene80899:intron | 40.0% | |
| GAACATCCAATCCATCCATA+CGG | - | chr6.3:14862729-14862748 | None:intergenic | 40.0% | |
| GATCAGTTGGATATCATAGC+TGG | - | chr6.3:14860351-14860370 | None:intergenic | 40.0% | |
| GCACCAAGTGTGCAATAAAA+TGG | - | chr6.3:14862577-14862596 | None:intergenic | 40.0% | |
| GGTCCTTCTACATTTACTGT+TGG | + | chr6.3:14859691-14859710 | MS.gene80899:CDS | 40.0% | |
| GTAAGTACAAGTGTCAGTGT+CGG | - | chr6.3:14860669-14860688 | None:intergenic | 40.0% | |
| TCCAAACGGGGATATTATCA+AGG | - | chr6.3:14861452-14861471 | None:intergenic | 40.0% | |
| TCCGAGTACTTGACAGAAAT+CGG | + | chr6.3:14861147-14861166 | MS.gene80899:CDS | 40.0% | |
| TGTAGTTACGAAGCCATGTT+TGG | - | chr6.3:14859632-14859651 | None:intergenic | 40.0% | |
| TTCCAAGGTTCTTCCAAACA+TGG | + | chr6.3:14859616-14859635 | MS.gene80899:CDS | 40.0% | |
| TTGATGAACTCACCAGCAAA+CGG | - | chr6.3:14861360-14861379 | None:intergenic | 40.0% | |
| TTTGGAAGAACCTTGGAAGT+GGG | - | chr6.3:14859614-14859633 | None:intergenic | 40.0% | |
| ! | AAGAATATGGCTCTACGTGA+GGG | - | chr6.3:14861072-14861091 | None:intergenic | 40.0% |
| ! | GCTTGAAGTATTCCATCAAG+AGG | - | chr6.3:14862518-14862537 | None:intergenic | 40.0% |
| ! | TAAGAATATGGCTCTACGTG+AGG | - | chr6.3:14861073-14861092 | None:intergenic | 40.0% |
| ! | TCCTTGATAATATCCCCGTT+TGG | + | chr6.3:14861448-14861467 | MS.gene80899:intron | 40.0% |
| !! | ATTCCCTCTACCTTTGAGAT+TGG | - | chr6.3:14861969-14861988 | None:intergenic | 40.0% |
| !! | GTATGGATGGATTGGATGTT+CGG | + | chr6.3:14862728-14862747 | MS.gene80899:CDS | 40.0% |
| !! | TTGCTTTGAAAGCCATGCAT+TGG | + | chr6.3:14861103-14861122 | MS.gene80899:CDS | 40.0% |
| !! | TTGGCTTTTCATCCTCTTGA+TGG | + | chr6.3:14862503-14862522 | MS.gene80899:CDS | 40.0% |
| ACATATGTCTGACACGACAC+CGG | - | chr6.3:14860641-14860660 | None:intergenic | 45.0% | |
| ACCAGTTAAATCCGCGAGTT+CGG | - | chr6.3:14862287-14862306 | None:intergenic | 45.0% | |
| ACGCCTTCGATCAGAATTGT+TGG | + | chr6.3:14860021-14860040 | MS.gene80899:intron | 45.0% | |
| ACTATGGGCATTACACCGTA+TGG | + | chr6.3:14862711-14862730 | MS.gene80899:CDS | 45.0% | |
| AGCCATGTTTGGAAGAACCT+TGG | - | chr6.3:14859621-14859640 | None:intergenic | 45.0% | |
| AGTACTTGACAGAAATCGGC+TGG | + | chr6.3:14861151-14861170 | MS.gene80899:CDS | 45.0% | |
| ATCTGCACTAACTACGGTTC+AGG | + | chr6.3:14862317-14862336 | MS.gene80899:intron | 45.0% | |
| CAGTCCAATCTCAAAGGTAG+AGG | + | chr6.3:14861962-14861981 | MS.gene80899:intron | 45.0% | |
| CATCCATCGCATATTCGATC+AGG | - | chr6.3:14861857-14861876 | None:intergenic | 45.0% | |
| CTGGCACGATATCAAGATCA+TGG | - | chr6.3:14862392-14862411 | None:intergenic | 45.0% | |
| GAACCTGATCGAATATGCGA+TGG | + | chr6.3:14861851-14861870 | MS.gene80899:intron | 45.0% | |
| GAGAAATGAAGGGAAGAAGG+AGG | + | chr6.3:14861630-14861649 | MS.gene80899:intron | 45.0% | |
| GGAAGACAGTCCAATCTCAA+AGG | + | chr6.3:14861956-14861975 | MS.gene80899:intron | 45.0% | |
| GTCAAGTACTCGGAAAGAGT+TGG | - | chr6.3:14861141-14861160 | None:intergenic | 45.0% | |
| GTTGGTTGGATTGCCTACAT+CGG | + | chr6.3:14861201-14861220 | MS.gene80899:CDS | 45.0% | |
| GTTTGGAAGAACCTTGGAAG+TGG | - | chr6.3:14859615-14859634 | None:intergenic | 45.0% | |
| TAACTACGGTTCAGGCAGTT+CGG | + | chr6.3:14862325-14862344 | MS.gene80899:intron | 45.0% | |
| TATCGTGCCAGTTCCATATC+TGG | + | chr6.3:14862401-14862420 | MS.gene80899:intron | 45.0% | |
| TCAAGCATTACCACATAGCC+TGG | + | chr6.3:14862532-14862551 | MS.gene80899:CDS | 45.0% | |
| TGATGAACTCACCAGCAAAC+GGG | - | chr6.3:14861359-14861378 | None:intergenic | 45.0% | |
| TGCCAGTTCCATATCTGGTT+TGG | + | chr6.3:14862406-14862425 | MS.gene80899:intron | 45.0% | |
| TGGCTTCGTAACTACATTGG+TGG | + | chr6.3:14859636-14859655 | MS.gene80899:CDS | 45.0% | |
| TTTGAGAGTCCTAGGAAGCA+CGG | + | chr6.3:14860592-14860611 | MS.gene80899:intron | 45.0% | |
| ! | GCCGATTTCTGTCAAGTACT+CGG | - | chr6.3:14861151-14861170 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTAAG+TGG | + | chr6.3:14860076-14860095 | MS.gene80899:intron | 5.0% |
| AATACTCTCTCCCCGTTTGC+TGG | + | chr6.3:14861345-14861364 | MS.gene80899:CDS | 50.0% | |
| ACCGAACTCGCGGATTTAAC+TGG | + | chr6.3:14862283-14862302 | MS.gene80899:intron | 50.0% | |
| ACTTTGCCTACGTCTTGCTC+GGG | - | chr6.3:14862767-14862786 | None:intergenic | 50.0% | |
| AGTGGGACCCACAAAAAGTG+AGG | - | chr6.3:14859597-14859616 | None:intergenic | 50.0% | |
| CACTTTGCCTACGTCTTGCT+CGG | - | chr6.3:14862768-14862787 | None:intergenic | 50.0% | |
| CATATGTCTGACACGACACC+GGG | - | chr6.3:14860640-14860659 | None:intergenic | 50.0% | |
| CTCGAACCAAGACGAAACTG+TGG | - | chr6.3:14862351-14862370 | None:intergenic | 50.0% | |
| GATGAACTCACCAGCAAACG+GGG | - | chr6.3:14861358-14861377 | None:intergenic | 50.0% | |
| TGGGCATTACACCGTATGGA+TGG | + | chr6.3:14862715-14862734 | MS.gene80899:CDS | 50.0% | |
| TGGTAACCAGCTCCCATAAC+AGG | - | chr6.3:14862662-14862681 | None:intergenic | 50.0% | |
| TTATGGCCTGTTATGGGAGC+TGG | + | chr6.3:14862653-14862672 | MS.gene80899:CDS | 50.0% | |
| ! | ATTCTGATCGAAGGCGTGTC+TGG | - | chr6.3:14860018-14860037 | None:intergenic | 50.0% |
| ! | TAGGAAGCACGGACATTCCT+CGG | + | chr6.3:14860603-14860622 | MS.gene80899:intron | 50.0% |
| ! | TTTTGTGGGTCCCACTTCCA+AGG | + | chr6.3:14859601-14859620 | MS.gene80899:CDS | 50.0% |
| CAGTCACTGGTAGACGAACG+AGG | + | chr6.3:14861664-14861683 | MS.gene80899:intron | 55.0% | |
| GACGTTGCAAAGACAGTCGC+CGG | + | chr6.3:14861688-14861707 | MS.gene80899:intron | 55.0% | |
| GAGGAATGTCCGTGCTTCCT+AGG | - | chr6.3:14860604-14860623 | None:intergenic | 55.0% | |
| GCACGGACATTCCTCGGATT+AGG | + | chr6.3:14860609-14860628 | MS.gene80899:intron | 55.0% | |
| GTTCGGCCACAGTTTCGTCT+TGG | + | chr6.3:14862342-14862361 | MS.gene80899:intron | 55.0% | |
| ! | TCCTCGGATTAGGCATGTCC+CGG | + | chr6.3:14860619-14860638 | MS.gene80899:intron | 55.0% |
| ACCGGGACATGCCTAATCCG+AGG | - | chr6.3:14860623-14860642 | None:intergenic | 60.0% | |
| CACGGACACCAGACACGACA+CGG | - | chr6.3:14860743-14860762 | None:intergenic | 60.0% | |
| GGACGCTGTGTTGCAGTCAC+TGG | + | chr6.3:14861651-14861670 | MS.gene80899:intron | 60.0% | |
| GTCAGTGTCCGTGTCGTGTC+TGG | + | chr6.3:14860732-14860751 | MS.gene80899:intron | 60.0% | |
| TCTCTCACACCCTCCTCTGC+CGG | - | chr6.3:14861710-14861729 | None:intergenic | 60.0% | |
| AAGACAGTCGCCGGCAGAGG+AGG | + | chr6.3:14861697-14861716 | MS.gene80899:intron | 65.0% | |
| AGACAGTCGCCGGCAGAGGA+GGG | + | chr6.3:14861698-14861717 | MS.gene80899:intron | 65.0% | |
| CGCGATCCCGAGCAAGACGT+AGG | + | chr6.3:14862758-14862777 | MS.gene80899:CDS | 65.0% | |
| GCAAAGACAGTCGCCGGCAG+AGG | + | chr6.3:14861694-14861713 | MS.gene80899:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 14859519 | 14862793 | 14859519 | ID=MS.gene80899 |
| chr6.3 | mRNA | 14859519 | 14862793 | 14859519 | ID=MS.gene80899.t1;Parent=MS.gene80899 |
| chr6.3 | exon | 14859519 | 14859738 | 14859519 | ID=MS.gene80899.t1.exon1;Parent=MS.gene80899.t1 |
| chr6.3 | CDS | 14859519 | 14859738 | 14859519 | ID=cds.MS.gene80899.t1;Parent=MS.gene80899.t1 |
| chr6.3 | exon | 14861061 | 14861366 | 14861061 | ID=MS.gene80899.t1.exon2;Parent=MS.gene80899.t1 |
| chr6.3 | CDS | 14861061 | 14861366 | 14861061 | ID=cds.MS.gene80899.t1;Parent=MS.gene80899.t1 |
| chr6.3 | exon | 14862501 | 14862793 | 14862501 | ID=MS.gene80899.t1.exon3;Parent=MS.gene80899.t1 |
| chr6.3 | CDS | 14862501 | 14862793 | 14862501 | ID=cds.MS.gene80899.t1;Parent=MS.gene80899.t1 |
| Gene Sequence |
| Protein sequence |
