Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83853.t1 | RHN52774.1 | 92.8 | 305 | 22 | 0 | 1 | 305 | 189 | 493 | 1.40E-163 | 585.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83853.t1 | Q9C9T2 | 50.5 | 293 | 121 | 6 | 1 | 290 | 179 | 450 | 1.5e-73 | 277.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83853.t1 | A0A396HLL0 | 92.8 | 305 | 22 | 0 | 1 | 305 | 189 | 493 | 1.0e-163 | 585.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene83853 | 0.820252 | 7.57E-53 | -1.69E-46 |
| MS.gene049413 | MS.gene83853 | 0.820247 | 7.59E-53 | -1.69E-46 |
| MS.gene050645 | MS.gene83853 | 0.802013 | 6.86E-49 | -1.69E-46 |
| MS.gene050669 | MS.gene83853 | 0.845022 | 5.26E-59 | -1.69E-46 |
| MS.gene050759 | MS.gene83853 | 0.811761 | 5.96E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene83853 | 0.813224 | 2.85E-51 | -1.69E-46 |
| MS.gene050962 | MS.gene83853 | 0.803111 | 4.07E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene83853 | 0.807108 | 5.94E-50 | -1.69E-46 |
| MS.gene052118 | MS.gene83853 | 0.832483 | 9.21E-56 | -1.69E-46 |
| MS.gene052493 | MS.gene83853 | 0.840417 | 8.80E-58 | -1.69E-46 |
| MS.gene052685 | MS.gene83853 | 0.804585 | 2.01E-49 | -1.69E-46 |
| MS.gene053643 | MS.gene83853 | 0.805317 | 1.42E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene83853 | 0.828515 | 8.61E-55 | -1.69E-46 |
| MS.gene054022 | MS.gene83853 | 0.815261 | 1.01E-51 | -1.69E-46 |
| MS.gene05410 | MS.gene83853 | 0.834052 | 3.75E-56 | -1.69E-46 |
| MS.gene05439 | MS.gene83853 | 0.876313 | 1.54E-68 | -1.69E-46 |
| MS.gene054479 | MS.gene83853 | 0.801717 | 7.89E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene83853 | 0.824032 | 1.01E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene83853 | 0.895399 | 9.95E-76 | -1.69E-46 |
| MS.gene054893 | MS.gene83853 | 0.890467 | 9.60E-74 | -1.69E-46 |
| MS.gene055147 | MS.gene83853 | 0.82924 | 5.75E-55 | -1.69E-46 |
| MS.gene055148 | MS.gene83853 | 0.809057 | 2.28E-50 | -1.69E-46 |
| MS.gene055149 | MS.gene83853 | 0.808663 | 2.77E-50 | -1.69E-46 |
| MS.gene055222 | MS.gene83853 | 0.808507 | 2.99E-50 | -1.69E-46 |
| MS.gene055226 | MS.gene83853 | 0.845471 | 3.98E-59 | -1.69E-46 |
| MS.gene055231 | MS.gene83853 | 0.821725 | 3.47E-53 | -1.69E-46 |
| MS.gene05624 | MS.gene83853 | 0.8162 | 6.25E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene83853 | 0.832419 | 9.56E-56 | -1.69E-46 |
| MS.gene057622 | MS.gene83853 | 0.808547 | 2.94E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene83853 | 0.821466 | 3.98E-53 | -1.69E-46 |
| MS.gene058592 | MS.gene83853 | 0.801179 | 1.02E-48 | -1.69E-46 |
| MS.gene05861 | MS.gene83853 | 0.806699 | 7.25E-50 | -1.69E-46 |
| MS.gene05878 | MS.gene83853 | 0.809828 | 1.56E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene83853 | 0.835829 | 1.34E-56 | -1.69E-46 |
| MS.gene05956 | MS.gene83853 | 0.803286 | 3.75E-49 | -1.69E-46 |
| MS.gene059686 | MS.gene83853 | 0.814107 | 1.82E-51 | -1.69E-46 |
| MS.gene059774 | MS.gene83853 | 0.805182 | 1.51E-49 | -1.69E-46 |
| MS.gene06023 | MS.gene83853 | 0.815651 | 8.29E-52 | -1.69E-46 |
| MS.gene060259 | MS.gene83853 | 0.81746 | 3.26E-52 | -1.69E-46 |
| MS.gene060412 | MS.gene83853 | 0.887097 | 1.92E-72 | -1.69E-46 |
| MS.gene060413 | MS.gene83853 | 0.855055 | 8.16E-62 | -1.69E-46 |
| MS.gene060520 | MS.gene83853 | 0.840853 | 6.77E-58 | -1.69E-46 |
| MS.gene060697 | MS.gene83853 | 0.80474 | 1.87E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene83853 | 0.822528 | 2.26E-53 | -1.69E-46 |
| MS.gene060850 | MS.gene83853 | 0.804106 | 2.53E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene83853 | 0.809633 | 1.72E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene83853 | 0.809348 | 1.98E-50 | -1.69E-46 |
| MS.gene061047 | MS.gene83853 | 0.850027 | 2.21E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83853.t1 | MTR_6g083730 | 90.164 | 305 | 22 | 1 | 1 | 305 | 189 | 485 | 0.0 | 576 |
| MS.gene83853.t1 | MTR_8g104510 | 64.912 | 285 | 95 | 3 | 1 | 285 | 188 | 467 | 3.00e-131 | 382 |
| MS.gene83853.t1 | MTR_8g104490 | 62.500 | 296 | 103 | 6 | 1 | 294 | 123 | 412 | 2.70e-123 | 359 |
| MS.gene83853.t1 | MTR_8g104490 | 62.500 | 296 | 103 | 6 | 1 | 294 | 188 | 477 | 6.91e-123 | 360 |
| MS.gene83853.t1 | MTR_6g083320 | 83.333 | 132 | 14 | 1 | 174 | 305 | 296 | 419 | 4.78e-72 | 228 |
| MS.gene83853.t1 | MTR_6g083320 | 92.793 | 111 | 8 | 0 | 1 | 111 | 189 | 299 | 2.13e-69 | 221 |
| MS.gene83853.t1 | MTR_4g128600 | 47.826 | 230 | 111 | 4 | 1 | 226 | 188 | 412 | 3.86e-65 | 216 |
| MS.gene83853.t1 | MTR_2g450080 | 44.015 | 259 | 129 | 4 | 1 | 254 | 189 | 436 | 1.14e-64 | 214 |
| MS.gene83853.t1 | MTR_2g011810 | 48.325 | 209 | 102 | 3 | 1 | 204 | 191 | 398 | 5.22e-60 | 202 |
| MS.gene83853.t1 | MTR_4g090970 | 47.368 | 209 | 104 | 3 | 1 | 204 | 190 | 397 | 1.18e-59 | 201 |
| MS.gene83853.t1 | MTR_4g106810 | 56.818 | 132 | 56 | 1 | 1 | 132 | 176 | 306 | 2.95e-49 | 172 |
| MS.gene83853.t1 | MTR_7g112000 | 35.885 | 209 | 128 | 4 | 1 | 207 | 176 | 380 | 2.34e-33 | 128 |
| MS.gene83853.t1 | MTR_7g111980 | 34.500 | 200 | 122 | 5 | 1 | 193 | 101 | 298 | 2.66e-27 | 111 |
| MS.gene83853.t1 | MTR_7g111980 | 34.500 | 200 | 122 | 5 | 1 | 193 | 184 | 381 | 3.58e-27 | 111 |
| MS.gene83853.t1 | MTR_7g111960 | 33.005 | 203 | 128 | 6 | 1 | 197 | 192 | 392 | 1.51e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83853.t1 | AT1G73805 | 50.853 | 293 | 120 | 6 | 1 | 290 | 179 | 450 | 1.52e-92 | 282 |
| MS.gene83853.t1 | AT5G57580 | 51.485 | 202 | 94 | 2 | 1 | 199 | 188 | 388 | 5.50e-65 | 216 |
| MS.gene83853.t1 | AT2G18750 | 39.088 | 307 | 167 | 8 | 1 | 289 | 192 | 496 | 1.42e-61 | 206 |
| MS.gene83853.t1 | AT2G18750 | 39.088 | 307 | 167 | 8 | 1 | 289 | 192 | 496 | 1.42e-61 | 206 |
| MS.gene83853.t1 | AT2G18750 | 39.088 | 307 | 167 | 8 | 1 | 289 | 192 | 496 | 1.42e-61 | 206 |
| MS.gene83853.t1 | AT4G25800 | 49.282 | 209 | 100 | 3 | 1 | 204 | 177 | 384 | 2.67e-61 | 205 |
| MS.gene83853.t1 | AT4G25800 | 49.282 | 209 | 100 | 3 | 1 | 204 | 177 | 384 | 2.67e-61 | 205 |
| MS.gene83853.t1 | AT2G24300 | 47.549 | 204 | 103 | 2 | 1 | 201 | 136 | 338 | 2.60e-55 | 188 |
| MS.gene83853.t1 | AT2G24300 | 47.549 | 204 | 103 | 2 | 1 | 201 | 183 | 385 | 6.57e-55 | 188 |
| MS.gene83853.t1 | AT2G24300 | 47.549 | 204 | 103 | 2 | 1 | 201 | 187 | 389 | 7.92e-55 | 187 |
| MS.gene83853.t1 | AT4G31000 | 42.105 | 247 | 130 | 5 | 1 | 239 | 187 | 428 | 2.00e-54 | 186 |
| MS.gene83853.t1 | AT5G62570 | 43.564 | 202 | 108 | 3 | 1 | 198 | 163 | 362 | 4.80e-53 | 181 |
| MS.gene83853.t1 | AT5G62570 | 43.564 | 202 | 108 | 3 | 1 | 198 | 178 | 377 | 9.10e-53 | 180 |
| MS.gene83853.t1 | AT5G62570 | 45.652 | 184 | 94 | 3 | 1 | 180 | 178 | 359 | 3.95e-52 | 176 |
| MS.gene83853.t1 | AT4G31000 | 37.652 | 247 | 125 | 6 | 1 | 239 | 182 | 407 | 1.40e-42 | 154 |
| MS.gene83853.t1 | AT5G26920 | 37.438 | 203 | 110 | 5 | 1 | 198 | 177 | 367 | 1.81e-40 | 146 |
| MS.gene83853.t1 | AT5G26920 | 37.438 | 203 | 110 | 5 | 1 | 198 | 177 | 367 | 6.66e-40 | 147 |
| MS.gene83853.t1 | AT5G26920 | 36.946 | 203 | 103 | 6 | 1 | 198 | 177 | 359 | 1.17e-36 | 138 |
| MS.gene83853.t1 | AT5G62570 | 55.357 | 112 | 49 | 1 | 1 | 112 | 178 | 288 | 3.51e-36 | 132 |
Find 78 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATAAGGGGCAGGAAGTTT+AGG | 0.239107 | 6.4:-57913840 | MS.gene83853:CDS |
| GTAGAGCTATATAGATAAAT+TGG | 0.240990 | 6.4:-57911865 | MS.gene83853:intron |
| GCTTTAATTAATTTGCATAT+TGG | 0.279068 | 6.4:+57912069 | None:intergenic |
| ACTGTTGCTGGATGATTGTT+TGG | 0.310236 | 6.4:+57911146 | None:intergenic |
| TCAGGCCTTAGGGACATTAA+TGG | 0.310731 | 6.4:-57910924 | MS.gene83853:CDS |
| TATGTTGTTGCTACTGTTGC+TGG | 0.313492 | 6.4:+57911134 | None:intergenic |
| TGCATTTGGTGTTGTGGTAT+AGG | 0.314012 | 6.4:+57911007 | None:intergenic |
| AATGCAAATGGATTTCCTTT+TGG | 0.323071 | 6.4:-57910990 | MS.gene83853:CDS |
| TATCATCAGAATCAATATTA+TGG | 0.324552 | 6.4:-57911113 | MS.gene83853:CDS |
| GATAAGGGGCAGGAAGTTTA+GGG | 0.339439 | 6.4:-57913839 | MS.gene83853:CDS |
| CACCTTCAGGTTCAGGCCTT+AGG | 0.352361 | 6.4:-57910935 | MS.gene83853:CDS |
| TTGGAGAAGCATACACAAAA+TGG | 0.358634 | 6.4:-57911842 | MS.gene83853:CDS |
| TATACTGTACCTTATTCATT+TGG | 0.359030 | 6.4:+57912004 | None:intergenic |
| GTACTTGAGCCAAATGAATA+AGG | 0.364385 | 6.4:-57912013 | MS.gene83853:intron |
| AAAGGAAATCCATTTGCATT+TGG | 0.365748 | 6.4:+57910993 | None:intergenic |
| GACTGAGGCATTTGTTGTTA+AGG | 0.376185 | 6.4:-57913761 | MS.gene83853:CDS |
| CAGGCCTTAGGGACATTAAT+GGG | 0.376761 | 6.4:-57910923 | MS.gene83853:CDS |
| ATATATACCTCTCTTAGCTT+TGG | 0.385685 | 6.4:+57912729 | None:intergenic |
| AGATAATTCTAGCTGGATAA+GGG | 0.394633 | 6.4:-57913854 | MS.gene83853:CDS |
| GATGAGGACATGACACCTTC+AGG | 0.405456 | 6.4:-57910948 | MS.gene83853:CDS |
| CAGATAATTCTAGCTGGATA+AGG | 0.405989 | 6.4:-57913855 | MS.gene83853:CDS |
| GAAGTTTAGGGTTGCAGTTA+TGG | 0.408854 | 6.4:-57913827 | MS.gene83853:CDS |
| GACATGACACCTTCAGGTTC+AGG | 0.411025 | 6.4:-57910942 | MS.gene83853:CDS |
| GTGTGGCGCCTAGAGAAGAT+AGG | 0.412903 | 6.4:-57912837 | MS.gene83853:CDS |
| ACCTTCAGGTTCAGGCCTTA+GGG | 0.438529 | 6.4:-57910934 | MS.gene83853:CDS |
| CATCTTTCCCTATCTTCTCT+AGG | 0.450984 | 6.4:+57912829 | None:intergenic |
| AGAGGTGGAATTGCACCAAT+TGG | 0.453092 | 6.4:-57913892 | MS.gene83853:CDS |
| ACCACAACACCAAATGCAAA+TGG | 0.454821 | 6.4:-57911002 | MS.gene83853:CDS |
| GCCATTTGTGCATTATTGCT+TGG | 0.455048 | 6.4:+57911056 | None:intergenic |
| ATGGGAGTAATCAAAGTGTT+AGG | 0.455811 | 6.4:-57913798 | MS.gene83853:CDS |
| ACATGGGGAGCAAGATCTAT+AGG | 0.460309 | 6.4:-57912125 | MS.gene83853:CDS |
| TTAATTAAAGCTAATATCAA+TGG | 0.468078 | 6.4:-57912057 | MS.gene83853:CDS |
| TCCATTTGCATTTGGTGTTG+TGG | 0.474676 | 6.4:+57911001 | None:intergenic |
| GCATATTGGATTCAGAAGAA+TGG | 0.478493 | 6.4:+57912083 | None:intergenic |
| AATGAGTTGGAGGAAATTGA+TGG | 0.479528 | 6.4:-57911819 | MS.gene83853:CDS |
| ACCAAGCAATAATGCACAAA+TGG | 0.486276 | 6.4:-57911057 | MS.gene83853:CDS |
| AACATTGCTTTGTTAACTCA+AGG | 0.487994 | 6.4:-57911783 | MS.gene83853:intron |
| TTGGCTCAAGTACTCTCTGC+TGG | 0.488877 | 6.4:+57912023 | None:intergenic |
| CACAAAATGGAATGAGTTGG+AGG | 0.508685 | 6.4:-57911829 | MS.gene83853:CDS |
| CACACATCATCGCCAAGCAT+TGG | 0.517632 | 6.4:+57912855 | None:intergenic |
| CCATCACAAAATGATGGCCA+AGG | 0.521911 | 6.4:-57912799 | MS.gene83853:CDS |
| AAACATCATCCACCAATGCT+TGG | 0.524035 | 6.4:-57912867 | MS.gene83853:CDS |
| AGCTATATAGATAAATTGGT+TGG | 0.536950 | 6.4:-57911861 | MS.gene83853:CDS |
| ATTCTAGCTGGATAAGGGGC+AGG | 0.539607 | 6.4:-57913849 | MS.gene83853:CDS |
| GTGAACTCTATGTCTCCAAT+TGG | 0.550652 | 6.4:+57913877 | None:intergenic |
| AGTTCACAGATAATTCTAGC+TGG | 0.556731 | 6.4:-57913861 | MS.gene83853:CDS |
| GTTGCAGTTATGGTGAGTCA+TGG | 0.556840 | 6.4:-57913817 | MS.gene83853:CDS |
| ACATCATCGCCAAGCATTGG+TGG | 0.557359 | 6.4:+57912858 | None:intergenic |
| TGAACCCATTAATGTCCCTA+AGG | 0.560681 | 6.4:+57910919 | None:intergenic |
| GATGGCCAAGGGGATCAAAA+CGG | 0.564022 | 6.4:-57912787 | MS.gene83853:CDS |
| TTGCAGTTATGGTGAGTCAT+GGG | 0.566538 | 6.4:-57913816 | MS.gene83853:CDS |
| TGTGAGCCTGTGAAGCCAAA+AGG | 0.567683 | 6.4:+57910975 | None:intergenic |
| ATACACAAAATGGAATGAGT+TGG | 0.570127 | 6.4:-57911832 | MS.gene83853:CDS |
| CTAGAGAAGATAGGGAAAGA+TGG | 0.572158 | 6.4:-57912828 | MS.gene83853:CDS |
| AGCTTTCCATCACAAAATGA+TGG | 0.576938 | 6.4:-57912805 | MS.gene83853:CDS |
| CAAAGTGTTAGGATTCAAGA+AGG | 0.583699 | 6.4:-57913787 | MS.gene83853:CDS |
| TGTGGCGCCTAGAGAAGATA+GGG | 0.589096 | 6.4:-57912836 | MS.gene83853:CDS |
| CAATGCTTGGCGATGATGTG+TGG | 0.590954 | 6.4:-57912854 | MS.gene83853:CDS |
| CATCACAAAATGATGGCCAA+GGG | 0.599188 | 6.4:-57912798 | MS.gene83853:CDS |
| GATAATTCTAGCTGGATAAG+GGG | 0.605740 | 6.4:-57913853 | MS.gene83853:CDS |
| GAATTGAACCTTACTATGAG+AGG | 0.607156 | 6.4:-57913910 | None:intergenic |
| CACAAATGGCAAGCAGTGAG+TGG | 0.611326 | 6.4:-57911043 | MS.gene83853:CDS |
| TTGAACCTTACTATGAGAGG+TGG | 0.618381 | 6.4:-57913907 | None:intergenic |
| TCCCTAAGGCCTGAACCTGA+AGG | 0.620292 | 6.4:+57910933 | None:intergenic |
| GCATGCAATGACTTGTGACA+TGG | 0.626229 | 6.4:-57912142 | MS.gene83853:CDS |
| GGGACATTAATGGGTTCACA+AGG | 0.645434 | 6.4:-57910914 | MS.gene83853:CDS |
| AGCAAGATCTATAGGTACCG+TGG | 0.658732 | 6.4:-57912117 | MS.gene83853:CDS |
| CACAGGCTCACAATCAGATG+AGG | 0.659714 | 6.4:-57910964 | MS.gene83853:CDS |
| GAATGGTAAACTGAGGTCCA+CGG | 0.664053 | 6.4:+57912100 | None:intergenic |
| TGATACTCCAAAGCTAAGAG+AGG | 0.665341 | 6.4:-57912736 | MS.gene83853:intron |
| CATGCAATGACTTGTGACAT+GGG | 0.667953 | 6.4:-57912141 | MS.gene83853:CDS |
| TTCAGAAGAATGGTAAACTG+AGG | 0.674138 | 6.4:+57912093 | None:intergenic |
| ATCACAAAATGATGGCCAAG+GGG | 0.679582 | 6.4:-57912797 | MS.gene83853:CDS |
| TGGGGATGTCTGATAGAATG+TGG | 0.679640 | 6.4:-57912179 | MS.gene83853:CDS |
| TTTGTTGTTAAGGATCATCG+TGG | 0.682651 | 6.4:-57913751 | MS.gene83853:CDS |
| GATTCAAGAAGGCATGACTG+AGG | 0.696401 | 6.4:-57913776 | MS.gene83853:CDS |
| AATTATAGGTGATCAAACTG+TGG | 0.703154 | 6.4:-57911177 | MS.gene83853:intron |
| ATGCAATGACTTGTGACATG+GGG | 0.729736 | 6.4:-57912140 | MS.gene83853:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAATATATTTACTTAA+AGG | + | chr6.4:57912530-57912549 | None:intergenic | 10.0% |
| !! | TTTAATATGAACTTAATTAT+AGG | - | chr6.4:57913609-57913628 | MS.gene83853:intron | 10.0% |
| !!! | TTTTTAGATACTTAATAAAA+TGG | + | chr6.4:57913529-57913548 | None:intergenic | 10.0% |
| !! | AGGTATATATCTTTATAATT+AGG | - | chr6.4:57912084-57912103 | MS.gene83853:CDS | 15.0% |
| !! | CATCTTAATAAGATATTTAA+GGG | + | chr6.4:57911256-57911275 | None:intergenic | 15.0% |
| !! | GGTATATATCTTTATAATTA+GGG | - | chr6.4:57912085-57912104 | MS.gene83853:CDS | 15.0% |
| !! | GTATATATCTTTATAATTAG+GGG | - | chr6.4:57912086-57912105 | MS.gene83853:CDS | 15.0% |
| !! | TAAATGTGAAATGAAAAATA+TGG | - | chr6.4:57911521-57911540 | MS.gene83853:intron | 15.0% |
| !! | TATATTATTGCAATATTGAT+TGG | - | chr6.4:57911160-57911179 | MS.gene83853:CDS | 15.0% |
| !! | TTAATTAAAGCTAATATCAA+TGG | - | chr6.4:57912743-57912762 | MS.gene83853:CDS | 15.0% |
| !!! | ATTTTCATAATTCATAAACT+TGG | - | chr6.4:57911086-57911105 | MS.gene83853:CDS | 15.0% |
| !!! | GATGAATTAATTTTTAAACT+CGG | - | chr6.4:57913261-57913280 | MS.gene83853:intron | 15.0% |
| !! | AAGAAATTGATCTTGTATAA+TGG | + | chr6.4:57912267-57912286 | None:intergenic | 20.0% |
| !! | ATTTAACATATTGGTCATAT+CGG | + | chr6.4:57913361-57913380 | None:intergenic | 20.0% |
| !! | CCATCTTAATAAGATATTTA+AGG | + | chr6.4:57911257-57911276 | None:intergenic | 20.0% |
| !! | CCTTAAATATCTTATTAAGA+TGG | - | chr6.4:57911254-57911273 | MS.gene83853:intron | 20.0% |
| !! | TATAAAAAACCCACTTATTA+TGG | - | chr6.4:57911651-57911670 | MS.gene83853:intron | 20.0% |
| !! | TATCATCAGAATCAATATTA+TGG | - | chr6.4:57913687-57913706 | MS.gene83853:intron | 20.0% |
| !! | TTACACTATATGTTAGATAT+TGG | - | chr6.4:57912869-57912888 | MS.gene83853:CDS | 20.0% |
| !!! | AACATGACTTAATTTTTTGT+AGG | - | chr6.4:57911133-57911152 | MS.gene83853:CDS | 20.0% |
| !!! | ATTTATCTGAAATCAGATTT+TGG | - | chr6.4:57912595-57912614 | MS.gene83853:intron | 20.0% |
| !!! | GCTTTAATTAATTTGCATAT+TGG | + | chr6.4:57912734-57912753 | None:intergenic | 20.0% |
| !!! | TAAGTTTAAGTTCAAATTTG+AGG | + | chr6.4:57912307-57912326 | None:intergenic | 20.0% |
| !!! | TCTTTATGCTAATTTTGTTT+AGG | - | chr6.4:57912148-57912167 | MS.gene83853:CDS | 20.0% |
| !!! | TTTATCTGAAATCAGATTTT+GGG | - | chr6.4:57912596-57912615 | MS.gene83853:intron | 20.0% |
| ! | AAACAAATTCATGTTAAGAG+TGG | - | chr6.4:57913426-57913445 | MS.gene83853:intron | 25.0% |
| ! | AATGCACACATTTAACATAT+TGG | + | chr6.4:57913370-57913389 | None:intergenic | 25.0% |
| ! | AGCTATATAGATAAATTGGT+TGG | - | chr6.4:57912939-57912958 | MS.gene83853:intron | 25.0% |
| ! | AGTATATATGATTCCTTAAC+AGG | + | chr6.4:57911825-57911844 | None:intergenic | 25.0% |
| ! | ATAAGATCATATACTCATAC+TGG | - | chr6.4:57913147-57913166 | MS.gene83853:intron | 25.0% |
| ! | CACCAATTAAAATGAATTAG+AGG | + | chr6.4:57912896-57912915 | None:intergenic | 25.0% |
| ! | GTAGAGCTATATAGATAAAT+TGG | - | chr6.4:57912935-57912954 | MS.gene83853:intron | 25.0% |
| ! | TACTTATTTCCAACTAACTT+TGG | - | chr6.4:57911208-57911227 | MS.gene83853:intron | 25.0% |
| ! | TATACTGTACCTTATTCATT+TGG | + | chr6.4:57912799-57912818 | None:intergenic | 25.0% |
| ! | TCTATAGTACAACTAAAAGT+GGG | + | chr6.4:57911282-57911301 | None:intergenic | 25.0% |
| ! | TGTACTATAGACTATGAAAT+AGG | - | chr6.4:57911291-57911310 | MS.gene83853:intron | 25.0% |
| ! | TGTAGTATTACTTTACTTTG+TGG | - | chr6.4:57912845-57912864 | MS.gene83853:CDS | 25.0% |
| ! | TTAAAAAGACCAAAGTTAGT+TGG | + | chr6.4:57911220-57911239 | None:intergenic | 25.0% |
| ! | TTGTACACTTCATGATAATT+AGG | + | chr6.4:57911912-57911931 | None:intergenic | 25.0% |
| !! | ATAGGGTAAATGATTTTTGT+TGG | - | chr6.4:57911687-57911706 | MS.gene83853:intron | 25.0% |
| !! | CTAGCAATATTTTCTATAGA+TGG | + | chr6.4:57913717-57913736 | None:intergenic | 25.0% |
| !! | TAGCTCTACAAATTTAGAAA+TGG | + | chr6.4:57912924-57912943 | None:intergenic | 25.0% |
| !!! | GTCCTCTAATTCATTTTAAT+TGG | - | chr6.4:57912891-57912910 | MS.gene83853:intron | 25.0% |
| AAAGGAAATCCATTTGCATT+TGG | + | chr6.4:57913810-57913829 | None:intergenic | 30.0% | |
| AAATGTGAGTCATTAGTAGA+TGG | + | chr6.4:57912826-57912845 | None:intergenic | 30.0% | |
| AATTATAGGTGATCAAACTG+TGG | - | chr6.4:57913623-57913642 | MS.gene83853:intron | 30.0% | |
| ATACACAAAATGGAATGAGT+TGG | - | chr6.4:57912968-57912987 | MS.gene83853:intron | 30.0% | |
| ATATATACCTCTCTTAGCTT+TGG | + | chr6.4:57912074-57912093 | None:intergenic | 30.0% | |
| ATATCTCTCTTAATCTGAGA+CGG | + | chr6.4:57911404-57911423 | None:intergenic | 30.0% | |
| CTATAGTACAACTAAAAGTG+GGG | + | chr6.4:57911281-57911300 | None:intergenic | 30.0% | |
| GTCTATAGTACAACTAAAAG+TGG | + | chr6.4:57911283-57911302 | None:intergenic | 30.0% | |
| TATTCTTGTAGTTGACATGT+TGG | - | chr6.4:57913218-57913237 | MS.gene83853:intron | 30.0% | |
| TGCTCTTATGATACATGTTA+AGG | - | chr6.4:57912372-57912391 | MS.gene83853:intron | 30.0% | |
| TTAGCATAAAGATAGACTCT+AGG | + | chr6.4:57912140-57912159 | None:intergenic | 30.0% | |
| ! | AACATTGCTTTGTTAACTCA+AGG | - | chr6.4:57913017-57913036 | MS.gene83853:intron | 30.0% |
| ! | AGATAATTCTAGCTGGATAA+GGG | - | chr6.4:57910946-57910965 | MS.gene83853:CDS | 30.0% |
| ! | TTAAGCATTTTTGCCTGTTA+AGG | - | chr6.4:57911809-57911828 | MS.gene83853:CDS | 30.0% |
| !! | AATGCAAATGGATTTCCTTT+TGG | - | chr6.4:57913810-57913829 | MS.gene83853:CDS | 30.0% |
| !! | CATTTTATAGCTTCTAGCTA+GGG | - | chr6.4:57911351-57911370 | MS.gene83853:intron | 30.0% |
| !! | TCATTTTATAGCTTCTAGCT+AGG | - | chr6.4:57911350-57911369 | MS.gene83853:intron | 30.0% |
| !! | TGAATTAGATTTGTTGCAGT+CGG | + | chr6.4:57913395-57913414 | None:intergenic | 30.0% |
| ACCAAGCAATAATGCACAAA+TGG | - | chr6.4:57913743-57913762 | MS.gene83853:intron | 35.0% | |
| ACGCTAATTGCACATGTTAA+AGG | + | chr6.4:57912504-57912523 | None:intergenic | 35.0% | |
| AGCTTTCCATCACAAAATGA+TGG | - | chr6.4:57911995-57912014 | MS.gene83853:intron | 35.0% | |
| AGTTCACAGATAATTCTAGC+TGG | - | chr6.4:57910939-57910958 | MS.gene83853:CDS | 35.0% | |
| ATCTCGTACAAAACTAGTAG+AGG | - | chr6.4:57913462-57913481 | MS.gene83853:intron | 35.0% | |
| GATCATATACTCATACTGGT+TGG | - | chr6.4:57913151-57913170 | MS.gene83853:intron | 35.0% | |
| GCATATTGGATTCAGAAGAA+TGG | + | chr6.4:57912720-57912739 | None:intergenic | 35.0% | |
| GTACTTGAGCCAAATGAATA+AGG | - | chr6.4:57912787-57912806 | MS.gene83853:CDS | 35.0% | |
| TTCAGAAGAATGGTAAACTG+AGG | + | chr6.4:57912710-57912729 | None:intergenic | 35.0% | |
| ! | AAGATAGACTCTAGGAAATG+TGG | + | chr6.4:57912132-57912151 | None:intergenic | 35.0% |
| ! | AATGAGTTGGAGGAAATTGA+TGG | - | chr6.4:57912981-57913000 | MS.gene83853:intron | 35.0% |
| ! | ATGGGAGTAATCAAAGTGTT+AGG | - | chr6.4:57911002-57911021 | MS.gene83853:CDS | 35.0% |
| ! | CAAAGTGTTAGGATTCAAGA+AGG | - | chr6.4:57911013-57911032 | MS.gene83853:CDS | 35.0% |
| ! | CAGATAATTCTAGCTGGATA+AGG | - | chr6.4:57910945-57910964 | MS.gene83853:CDS | 35.0% |
| ! | CATATTGGTCATATCGGTTA+AGG | + | chr6.4:57913355-57913374 | None:intergenic | 35.0% |
| ! | GATAATTCTAGCTGGATAAG+GGG | - | chr6.4:57910947-57910966 | MS.gene83853:CDS | 35.0% |
| ! | TGAAATCAGATTTTGGGCAT+GGG | - | chr6.4:57912602-57912621 | MS.gene83853:intron | 35.0% |
| ! | TTGGAGAAGCATACACAAAA+TGG | - | chr6.4:57912958-57912977 | MS.gene83853:intron | 35.0% |
| !! | TTTGTTGTTAAGGATCATCG+TGG | - | chr6.4:57911049-57911068 | MS.gene83853:CDS | 35.0% |
| AAACATCATCCACCAATGCT+TGG | - | chr6.4:57911933-57911952 | MS.gene83853:intron | 40.0% | |
| ACCACAACACCAAATGCAAA+TGG | - | chr6.4:57913798-57913817 | MS.gene83853:CDS | 40.0% | |
| ACCCACTTATTATGGAACAG+AGG | - | chr6.4:57911659-57911678 | MS.gene83853:intron | 40.0% | |
| ACTGTTGCTGGATGATTGTT+TGG | + | chr6.4:57913657-57913676 | None:intergenic | 40.0% | |
| ATCACAAAATGATGGCCAAG+GGG | - | chr6.4:57912003-57912022 | MS.gene83853:intron | 40.0% | |
| ATGGAACAGAGGGAGTAATA+GGG | - | chr6.4:57911670-57911689 | MS.gene83853:intron | 40.0% | |
| CATCACAAAATGATGGCCAA+GGG | - | chr6.4:57912002-57912021 | MS.gene83853:intron | 40.0% | |
| CATCTTTCCCTATCTTCTCT+AGG | + | chr6.4:57911974-57911993 | None:intergenic | 40.0% | |
| CCCACTTATTATGGAACAGA+GGG | - | chr6.4:57911660-57911679 | MS.gene83853:intron | 40.0% | |
| CCCTCTGTTCCATAATAAGT+GGG | + | chr6.4:57911663-57911682 | None:intergenic | 40.0% | |
| CTAGAGAAGATAGGGAAAGA+TGG | - | chr6.4:57911972-57911991 | MS.gene83853:intron | 40.0% | |
| GCCATTTGTGCATTATTGCT+TGG | + | chr6.4:57913747-57913766 | None:intergenic | 40.0% | |
| GTGAACTCTATGTCTCCAAT+TGG | + | chr6.4:57910926-57910945 | None:intergenic | 40.0% | |
| TATGGAACAGAGGGAGTAAT+AGG | - | chr6.4:57911669-57911688 | MS.gene83853:intron | 40.0% | |
| TATGTTGTTGCTACTGTTGC+TGG | + | chr6.4:57913669-57913688 | None:intergenic | 40.0% | |
| TCCCTCTGTTCCATAATAAG+TGG | + | chr6.4:57911664-57911683 | None:intergenic | 40.0% | |
| TGAACCCATTAATGTCCCTA+AGG | + | chr6.4:57913884-57913903 | None:intergenic | 40.0% | |
| TGATACTCCAAAGCTAAGAG+AGG | - | chr6.4:57912064-57912083 | MS.gene83853:CDS | 40.0% | |
| TTGCAGTTATGGTGAGTCAT+GGG | - | chr6.4:57910984-57911003 | MS.gene83853:CDS | 40.0% | |
| ! | ATGCAATGACTTGTGACATG+GGG | - | chr6.4:57912660-57912679 | MS.gene83853:intron | 40.0% |
| ! | CACAAAATGGAATGAGTTGG+AGG | - | chr6.4:57912971-57912990 | MS.gene83853:intron | 40.0% |
| ! | CATGCAATGACTTGTGACAT+GGG | - | chr6.4:57912659-57912678 | MS.gene83853:intron | 40.0% |
| ! | CTGAAATCAGATTTTGGGCA+TGG | - | chr6.4:57912601-57912620 | MS.gene83853:intron | 40.0% |
| ! | GAAATCAGATTTTGGGCATG+GGG | - | chr6.4:57912603-57912622 | MS.gene83853:intron | 40.0% |
| ! | GAAGTTTAGGGTTGCAGTTA+TGG | - | chr6.4:57910973-57910992 | MS.gene83853:CDS | 40.0% |
| !! | GACTGAGGCATTTGTTGTTA+AGG | - | chr6.4:57911039-57911058 | MS.gene83853:CDS | 40.0% |
| !! | TCCATTTGCATTTGGTGTTG+TGG | + | chr6.4:57913802-57913821 | None:intergenic | 40.0% |
| !! | TGCATTTGGTGTTGTGGTAT+AGG | + | chr6.4:57913796-57913815 | None:intergenic | 40.0% |
| ACATGGGGAGCAAGATCTAT+AGG | - | chr6.4:57912675-57912694 | MS.gene83853:intron | 45.0% | |
| AGAGGTGGAATTGCACCAAT+TGG | - | chr6.4:57910908-57910927 | MS.gene83853:CDS | 45.0% | |
| CAGGCCTTAGGGACATTAAT+GGG | - | chr6.4:57913877-57913896 | MS.gene83853:CDS | 45.0% | |
| CCACACAAGACATGTTGTAG+TGG | - | chr6.4:57913184-57913203 | MS.gene83853:intron | 45.0% | |
| CCACTACAACATGTCTTGTG+TGG | + | chr6.4:57913187-57913206 | None:intergenic | 45.0% | |
| CCATCACAAAATGATGGCCA+AGG | - | chr6.4:57912001-57912020 | MS.gene83853:intron | 45.0% | |
| GAATGGTAAACTGAGGTCCA+CGG | + | chr6.4:57912703-57912722 | None:intergenic | 45.0% | |
| GATAAGGGGCAGGAAGTTTA+GGG | - | chr6.4:57910961-57910980 | MS.gene83853:CDS | 45.0% | |
| GTTGCAGTTATGGTGAGTCA+TGG | - | chr6.4:57910983-57911002 | MS.gene83853:CDS | 45.0% | |
| TCAGGCCTTAGGGACATTAA+TGG | - | chr6.4:57913876-57913895 | MS.gene83853:CDS | 45.0% | |
| TGGGGATGTCTGATAGAATG+TGG | - | chr6.4:57912621-57912640 | MS.gene83853:intron | 45.0% | |
| ! | AGCAAGATCTATAGGTACCG+TGG | - | chr6.4:57912683-57912702 | MS.gene83853:intron | 45.0% |
| ! | CCTTGGCCATCATTTTGTGA+TGG | + | chr6.4:57912004-57912023 | None:intergenic | 45.0% |
| ! | GATTCAAGAAGGCATGACTG+AGG | - | chr6.4:57911024-57911043 | MS.gene83853:CDS | 45.0% |
| ! | GCATGCAATGACTTGTGACA+TGG | - | chr6.4:57912658-57912677 | MS.gene83853:intron | 45.0% |
| !! | GGGACATTAATGGGTTCACA+AGG | - | chr6.4:57913886-57913905 | MS.gene83853:CDS | 45.0% |
| !!! | GGATTTCCTTTTGGCTTCAC+AGG | - | chr6.4:57913819-57913838 | MS.gene83853:CDS | 45.0% |
| CAATGCTTGGCGATGATGTG+TGG | - | chr6.4:57911946-57911965 | MS.gene83853:intron | 50.0% | |
| CACAAATGGCAAGCAGTGAG+TGG | - | chr6.4:57913757-57913776 | MS.gene83853:CDS | 50.0% | |
| CACACATCATCGCCAAGCAT+TGG | + | chr6.4:57911948-57911967 | None:intergenic | 50.0% | |
| CACAGGCTCACAATCAGATG+AGG | - | chr6.4:57913836-57913855 | MS.gene83853:CDS | 50.0% | |
| GATGAGGACATGACACCTTC+AGG | - | chr6.4:57913852-57913871 | MS.gene83853:CDS | 50.0% | |
| GATGGCCAAGGGGATCAAAA+CGG | - | chr6.4:57912013-57912032 | MS.gene83853:intron | 50.0% | |
| GGATAAGGGGCAGGAAGTTT+AGG | - | chr6.4:57910960-57910979 | MS.gene83853:CDS | 50.0% | |
| TGTGAGCCTGTGAAGCCAAA+AGG | + | chr6.4:57913828-57913847 | None:intergenic | 50.0% | |
| TGTGGCGCCTAGAGAAGATA+GGG | - | chr6.4:57911964-57911983 | MS.gene83853:intron | 50.0% | |
| TTGGCTCAAGTACTCTCTGC+TGG | + | chr6.4:57912780-57912799 | None:intergenic | 50.0% | |
| ! | ACCTTCAGGTTCAGGCCTTA+GGG | - | chr6.4:57913866-57913885 | MS.gene83853:CDS | 50.0% |
| ! | ATTCTAGCTGGATAAGGGGC+AGG | - | chr6.4:57910951-57910970 | MS.gene83853:CDS | 50.0% |
| ! | GACATGACACCTTCAGGTTC+AGG | - | chr6.4:57913858-57913877 | MS.gene83853:CDS | 50.0% |
| !! | ACATCATCGCCAAGCATTGG+TGG | + | chr6.4:57911945-57911964 | None:intergenic | 50.0% |
| !! | TTGCACCGTTTTGATCCCCT+TGG | + | chr6.4:57912021-57912040 | None:intergenic | 50.0% |
| GTGTGGCGCCTAGAGAAGAT+AGG | - | chr6.4:57911963-57911982 | MS.gene83853:intron | 55.0% | |
| TCCCTAAGGCCTGAACCTGA+AGG | + | chr6.4:57913870-57913889 | None:intergenic | 55.0% | |
| ! | CACCTTCAGGTTCAGGCCTT+AGG | - | chr6.4:57913865-57913884 | MS.gene83853:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 57910905 | 57913917 | 57910905 | ID=MS.gene83853 |
| chr6.4 | mRNA | 57910905 | 57913917 | 57910905 | ID=MS.gene83853.t1;Parent=MS.gene83853 |
| chr6.4 | exon | 57913746 | 57913917 | 57913746 | ID=MS.gene83853.t1.exon1;Parent=MS.gene83853.t1 |
| chr6.4 | CDS | 57913746 | 57913917 | 57913746 | ID=cds.MS.gene83853.t1;Parent=MS.gene83853.t1 |
| chr6.4 | exon | 57912737 | 57912897 | 57912737 | ID=MS.gene83853.t1.exon2;Parent=MS.gene83853.t1 |
| chr6.4 | CDS | 57912737 | 57912897 | 57912737 | ID=cds.MS.gene83853.t1;Parent=MS.gene83853.t1 |
| chr6.4 | exon | 57912014 | 57912211 | 57912014 | ID=MS.gene83853.t1.exon3;Parent=MS.gene83853.t1 |
| chr6.4 | CDS | 57912014 | 57912211 | 57912014 | ID=cds.MS.gene83853.t1;Parent=MS.gene83853.t1 |
| chr6.4 | exon | 57911784 | 57911883 | 57911784 | ID=MS.gene83853.t1.exon4;Parent=MS.gene83853.t1 |
| chr6.4 | CDS | 57911784 | 57911883 | 57911784 | ID=cds.MS.gene83853.t1;Parent=MS.gene83853.t1 |
| chr6.4 | exon | 57910905 | 57911191 | 57910905 | ID=MS.gene83853.t1.exon5;Parent=MS.gene83853.t1 |
| chr6.4 | CDS | 57910905 | 57911191 | 57910905 | ID=cds.MS.gene83853.t1;Parent=MS.gene83853.t1 |
| Gene Sequence |
| Protein sequence |
