Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84523.t1 | XP_013460083.1 | 97.4 | 463 | 12 | 0 | 1 | 463 | 1 | 463 | 3.90E-261 | 910.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84523.t1 | Q9FF99 | 58.9 | 445 | 178 | 3 | 19 | 458 | 21 | 465 | 2.7e-154 | 546.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84523.t1 | A0A072UWA1 | 97.4 | 463 | 12 | 0 | 1 | 463 | 1 | 463 | 2.8e-261 | 910.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene84523 | 0.842539 | 2.43E-58 | -1.69E-46 |
| MS.gene049151 | MS.gene84523 | 0.815093 | 1.10E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene84523 | 0.830714 | 2.51E-55 | -1.69E-46 |
| MS.gene049233 | MS.gene84523 | 0.816929 | 4.29E-52 | -1.69E-46 |
| MS.gene049426 | MS.gene84523 | 0.803516 | 3.36E-49 | -1.69E-46 |
| MS.gene049443 | MS.gene84523 | 0.822039 | 2.93E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene84523 | 0.824053 | 9.94E-54 | -1.69E-46 |
| MS.gene049910 | MS.gene84523 | 0.815456 | 9.16E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene84523 | 0.849498 | 3.11E-60 | -1.69E-46 |
| MS.gene050226 | MS.gene84523 | 0.81806 | 2.39E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene84523 | 0.813803 | 2.13E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene84523 | 0.804636 | 1.96E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene84523 | 0.832839 | 7.52E-56 | -1.69E-46 |
| MS.gene050558 | MS.gene84523 | 0.814042 | 1.88E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene84523 | 0.821632 | 3.64E-53 | -1.69E-46 |
| MS.gene050763 | MS.gene84523 | 0.822166 | 2.74E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene84523 | 0.844373 | 7.87E-59 | -1.69E-46 |
| MS.gene052188 | MS.gene84523 | 0.824273 | 8.83E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene84523 | 0.811743 | 6.01E-51 | -1.69E-46 |
| MS.gene052426 | MS.gene84523 | 0.808521 | 2.97E-50 | -1.69E-46 |
| MS.gene053073 | MS.gene84523 | 0.804051 | 2.60E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene84523 | 0.869067 | 4.09E-66 | -1.69E-46 |
| MS.gene053494 | MS.gene84523 | 0.836964 | 6.87E-57 | -1.69E-46 |
| MS.gene053555 | MS.gene84523 | 0.82643 | 2.72E-54 | -1.69E-46 |
| MS.gene053559 | MS.gene84523 | 0.812245 | 4.67E-51 | -1.69E-46 |
| MS.gene053577 | MS.gene84523 | 0.852687 | 3.92E-61 | -1.69E-46 |
| MS.gene053836 | MS.gene84523 | 0.839097 | 1.94E-57 | -1.69E-46 |
| MS.gene054011 | MS.gene84523 | 0.801572 | 8.45E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene84523 | 0.839617 | 1.42E-57 | -1.69E-46 |
| MS.gene054542 | MS.gene84523 | 0.803494 | 3.39E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene84523 | 0.803578 | 3.26E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene84523 | 0.853083 | 3.02E-61 | -1.69E-46 |
| MS.gene055604 | MS.gene84523 | 0.805401 | 1.36E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene84523 | 0.813567 | 2.40E-51 | -1.69E-46 |
| MS.gene056447 | MS.gene84523 | 0.83737 | 5.41E-57 | -1.69E-46 |
| MS.gene056723 | MS.gene84523 | 0.801263 | 9.78E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene84523 | 0.829809 | 4.18E-55 | -1.69E-46 |
| MS.gene057449 | MS.gene84523 | 0.825126 | 5.56E-54 | -1.69E-46 |
| MS.gene057450 | MS.gene84523 | 0.829852 | 4.08E-55 | -1.69E-46 |
| MS.gene057469 | MS.gene84523 | 0.859117 | 5.16E-63 | -1.69E-46 |
| MS.gene057750 | MS.gene84523 | 0.811596 | 6.47E-51 | -1.69E-46 |
| MS.gene057929 | MS.gene84523 | 0.814379 | 1.59E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene84523 | 0.80462 | 1.98E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene84523 | 0.834776 | 2.46E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene84523 | 0.80724 | 5.57E-50 | -1.69E-46 |
| MS.gene059124 | MS.gene84523 | 0.801514 | 8.69E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene84523 | 0.833991 | 3.88E-56 | -1.69E-46 |
| MS.gene059161 | MS.gene84523 | 0.804887 | 1.74E-49 | -1.69E-46 |
| MS.gene059462 | MS.gene84523 | 0.815907 | 7.27E-52 | -1.69E-46 |
| MS.gene059807 | MS.gene84523 | 0.803927 | 2.76E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene84523 | 0.816357 | 5.77E-52 | -1.69E-46 |
| MS.gene059876 | MS.gene84523 | 0.807964 | 3.91E-50 | -1.69E-46 |
| MS.gene060480 | MS.gene84523 | 0.810507 | 1.11E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene84523 | 0.872175 | 3.89E-67 | -1.69E-46 |
| MS.gene060683 | MS.gene84523 | 0.801602 | 8.33E-49 | -1.69E-46 |
| MS.gene060943 | MS.gene84523 | 0.802075 | 6.66E-49 | -1.69E-46 |
| MS.gene061002 | MS.gene84523 | 0.807763 | 4.31E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene84523 | 0.806825 | 6.82E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84523.t1 | MTR_3g461440 | 97.408 | 463 | 12 | 0 | 1 | 463 | 1 | 463 | 0.0 | 929 |
| MS.gene84523.t1 | MTR_3g461470 | 95.032 | 463 | 23 | 0 | 1 | 463 | 1 | 463 | 0.0 | 910 |
| MS.gene84523.t1 | MTR_3g061390 | 85.652 | 460 | 66 | 0 | 1 | 460 | 1 | 460 | 0.0 | 836 |
| MS.gene84523.t1 | MTR_3g461430 | 83.731 | 461 | 68 | 2 | 1 | 454 | 1 | 461 | 0.0 | 801 |
| MS.gene84523.t1 | MTR_5g096840 | 71.982 | 439 | 122 | 1 | 23 | 460 | 29 | 467 | 0.0 | 676 |
| MS.gene84523.t1 | MTR_3g461440 | 97.239 | 326 | 9 | 0 | 138 | 463 | 1 | 326 | 0.0 | 658 |
| MS.gene84523.t1 | MTR_3g461480 | 54.348 | 460 | 206 | 2 | 2 | 460 | 9 | 465 | 0.0 | 530 |
| MS.gene84523.t1 | MTR_3g088455 | 52.434 | 452 | 215 | 0 | 6 | 457 | 17 | 468 | 0.0 | 524 |
| MS.gene84523.t1 | MTR_8g094290 | 52.809 | 445 | 205 | 2 | 15 | 457 | 23 | 464 | 0.0 | 523 |
| MS.gene84523.t1 | MTR_3g088475 | 52.318 | 453 | 215 | 1 | 6 | 457 | 17 | 469 | 0.0 | 520 |
| MS.gene84523.t1 | MTR_1g029750 | 53.670 | 436 | 199 | 2 | 10 | 442 | 22 | 457 | 1.68e-177 | 506 |
| MS.gene84523.t1 | MTR_4g073520 | 49.889 | 451 | 218 | 1 | 13 | 455 | 49 | 499 | 8.69e-176 | 503 |
| MS.gene84523.t1 | MTR_4g073520 | 49.889 | 451 | 218 | 1 | 13 | 455 | 49 | 499 | 1.00e-175 | 503 |
| MS.gene84523.t1 | MTR_3g110660 | 50.000 | 464 | 222 | 3 | 4 | 457 | 8 | 471 | 1.90e-174 | 498 |
| MS.gene84523.t1 | MTR_5g096850 | 52.968 | 438 | 205 | 1 | 23 | 459 | 25 | 462 | 1.07e-169 | 485 |
| MS.gene84523.t1 | MTR_1g007380 | 49.103 | 446 | 223 | 2 | 16 | 457 | 16 | 461 | 3.10e-169 | 484 |
| MS.gene84523.t1 | MTR_1g105980 | 49.130 | 460 | 225 | 3 | 7 | 457 | 1 | 460 | 3.44e-168 | 482 |
| MS.gene84523.t1 | MTR_3g096840 | 50.439 | 456 | 219 | 3 | 1 | 454 | 19 | 469 | 2.57e-166 | 478 |
| MS.gene84523.t1 | MTR_1g105990 | 48.817 | 465 | 227 | 4 | 1 | 457 | 1 | 462 | 2.47e-163 | 469 |
| MS.gene84523.t1 | MTR_3g096800 | 49.324 | 444 | 220 | 2 | 16 | 457 | 26 | 466 | 8.18e-163 | 468 |
| MS.gene84523.t1 | MTR_1g105995 | 49.664 | 447 | 219 | 2 | 16 | 457 | 14 | 459 | 2.05e-162 | 467 |
| MS.gene84523.t1 | MTR_3g096830 | 51.878 | 426 | 198 | 3 | 11 | 434 | 14 | 434 | 8.81e-160 | 460 |
| MS.gene84523.t1 | MTR_1g106000 | 47.204 | 447 | 221 | 3 | 23 | 455 | 15 | 460 | 9.40e-156 | 450 |
| MS.gene84523.t1 | MTR_3g088465 | 53.261 | 368 | 171 | 1 | 6 | 372 | 17 | 384 | 2.61e-147 | 426 |
| MS.gene84523.t1 | MTR_3g110420 | 43.886 | 458 | 252 | 3 | 1 | 454 | 1 | 457 | 3.42e-142 | 416 |
| MS.gene84523.t1 | MTR_1g007270 | 42.694 | 438 | 244 | 3 | 17 | 453 | 27 | 458 | 6.12e-136 | 400 |
| MS.gene84523.t1 | MTR_1g007180 | 42.152 | 446 | 251 | 4 | 17 | 459 | 6 | 447 | 1.86e-132 | 390 |
| MS.gene84523.t1 | MTR_2g031750 | 42.986 | 442 | 246 | 3 | 16 | 454 | 5 | 443 | 2.83e-131 | 387 |
| MS.gene84523.t1 | MTR_3g110660 | 54.328 | 335 | 143 | 3 | 4 | 328 | 8 | 342 | 1.20e-130 | 383 |
| MS.gene84523.t1 | MTR_1g007240 | 40.541 | 444 | 258 | 3 | 17 | 457 | 6 | 446 | 8.71e-128 | 378 |
| MS.gene84523.t1 | MTR_3g110430 | 42.825 | 439 | 249 | 2 | 17 | 454 | 55 | 492 | 7.75e-126 | 375 |
| MS.gene84523.t1 | MTR_3g110420 | 45.482 | 332 | 177 | 2 | 1 | 328 | 1 | 332 | 4.72e-104 | 313 |
| MS.gene84523.t1 | MTR_2g031750 | 40.909 | 374 | 215 | 3 | 84 | 454 | 6 | 376 | 1.98e-103 | 314 |
| MS.gene84523.t1 | MTR_5g017200 | 50.400 | 250 | 111 | 4 | 17 | 264 | 26 | 264 | 3.15e-80 | 250 |
| MS.gene84523.t1 | MTR_1g007180 | 38.721 | 297 | 175 | 4 | 166 | 459 | 71 | 363 | 4.61e-74 | 238 |
| MS.gene84523.t1 | MTR_6g022790 | 28.878 | 419 | 257 | 11 | 22 | 432 | 41 | 426 | 1.09e-44 | 162 |
| MS.gene84523.t1 | MTR_4g103890 | 29.384 | 422 | 248 | 11 | 22 | 429 | 2 | 387 | 3.06e-43 | 157 |
| MS.gene84523.t1 | MTR_8g080120 | 27.948 | 458 | 293 | 9 | 5 | 457 | 3 | 428 | 9.57e-43 | 157 |
| MS.gene84523.t1 | MTR_2g101920 | 27.934 | 426 | 269 | 10 | 10 | 429 | 32 | 425 | 1.35e-41 | 154 |
| MS.gene84523.t1 | MTR_5g054730 | 28.251 | 446 | 284 | 10 | 18 | 460 | 22 | 434 | 1.29e-39 | 148 |
| MS.gene84523.t1 | MTR_3g085820 | 28.212 | 358 | 220 | 9 | 34 | 387 | 44 | 368 | 2.10e-36 | 138 |
| MS.gene84523.t1 | MTR_1g007190 | 41.573 | 178 | 85 | 3 | 34 | 208 | 21 | 182 | 4.35e-36 | 132 |
| MS.gene84523.t1 | MTR_1g093020 | 27.033 | 455 | 290 | 10 | 10 | 458 | 12 | 430 | 8.96e-36 | 137 |
| MS.gene84523.t1 | MTR_7g038910 | 28.045 | 353 | 220 | 8 | 10 | 344 | 3 | 339 | 1.18e-35 | 136 |
| MS.gene84523.t1 | MTR_1g093020 | 27.804 | 428 | 267 | 10 | 10 | 431 | 12 | 403 | 1.40e-35 | 136 |
| MS.gene84523.t1 | MTR_7g038910 | 28.045 | 353 | 220 | 8 | 10 | 344 | 3 | 339 | 1.92e-35 | 135 |
| MS.gene84523.t1 | MTR_7g038910 | 28.045 | 353 | 220 | 8 | 10 | 344 | 3 | 339 | 7.73e-35 | 135 |
| MS.gene84523.t1 | MTR_6g023075 | 27.273 | 429 | 274 | 10 | 34 | 457 | 25 | 420 | 3.18e-33 | 130 |
| MS.gene84523.t1 | MTR_6g023065 | 27.336 | 428 | 274 | 9 | 34 | 457 | 61 | 455 | 1.12e-32 | 129 |
| MS.gene84523.t1 | MTR_3g005740 | 29.067 | 375 | 229 | 10 | 22 | 390 | 51 | 394 | 5.21e-32 | 127 |
| MS.gene84523.t1 | MTR_6g022780 | 25.541 | 462 | 297 | 11 | 1 | 457 | 1 | 420 | 1.91e-31 | 125 |
| MS.gene84523.t1 | MTR_1g093030 | 26.730 | 419 | 266 | 9 | 19 | 431 | 20 | 403 | 4.51e-31 | 124 |
| MS.gene84523.t1 | MTR_1g070470 | 25.000 | 452 | 297 | 14 | 14 | 457 | 13 | 430 | 6.55e-31 | 124 |
| MS.gene84523.t1 | MTR_2g096830 | 27.807 | 374 | 234 | 9 | 18 | 387 | 9 | 350 | 3.10e-30 | 122 |
| MS.gene84523.t1 | MTR_2g096830 | 29.739 | 306 | 195 | 8 | 34 | 335 | 25 | 314 | 3.88e-30 | 120 |
| MS.gene84523.t1 | MTR_0531s0020 | 29.373 | 303 | 186 | 8 | 34 | 328 | 60 | 342 | 8.40e-29 | 117 |
| MS.gene84523.t1 | MTR_1g492640 | 25.000 | 428 | 287 | 11 | 34 | 455 | 70 | 469 | 5.14e-27 | 113 |
| MS.gene84523.t1 | MTR_4g055610 | 27.381 | 420 | 265 | 15 | 4 | 413 | 19 | 408 | 2.85e-25 | 108 |
| MS.gene84523.t1 | MTR_4g075750 | 24.878 | 410 | 272 | 10 | 24 | 421 | 71 | 456 | 1.07e-24 | 107 |
| MS.gene84523.t1 | MTR_8g099320 | 26.058 | 449 | 289 | 16 | 17 | 454 | 18 | 434 | 5.50e-22 | 98.6 |
| MS.gene84523.t1 | MTR_1g492640 | 26.936 | 297 | 197 | 9 | 34 | 324 | 52 | 334 | 1.93e-21 | 95.9 |
| MS.gene84523.t1 | MTR_1g492640 | 26.936 | 297 | 197 | 9 | 34 | 324 | 70 | 352 | 2.79e-21 | 95.9 |
| MS.gene84523.t1 | MTR_3g115090 | 22.616 | 451 | 308 | 14 | 22 | 460 | 83 | 504 | 1.40e-19 | 91.7 |
| MS.gene84523.t1 | MTR_4g104510 | 25.182 | 413 | 257 | 16 | 54 | 457 | 71 | 440 | 3.13e-16 | 81.3 |
| MS.gene84523.t1 | MTR_4g104510 | 25.240 | 416 | 251 | 19 | 54 | 457 | 71 | 438 | 4.61e-16 | 80.5 |
| MS.gene84523.t1 | MTR_2g012470 | 24.513 | 359 | 241 | 9 | 23 | 360 | 95 | 444 | 2.88e-15 | 78.6 |
| MS.gene84523.t1 | MTR_5g081630 | 24.051 | 395 | 256 | 11 | 54 | 442 | 4 | 360 | 1.04e-14 | 75.9 |
| MS.gene84523.t1 | MTR_1g492640 | 29.630 | 162 | 105 | 5 | 34 | 194 | 52 | 205 | 7.00e-14 | 72.0 |
| MS.gene84523.t1 | MTR_1g492640 | 29.630 | 162 | 105 | 5 | 34 | 194 | 70 | 223 | 1.01e-13 | 71.6 |
| MS.gene84523.t1 | MTR_3g069960 | 25.872 | 344 | 203 | 14 | 89 | 421 | 88 | 390 | 3.33e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84523.t1 | AT1G77380 | 54.253 | 435 | 197 | 1 | 10 | 442 | 16 | 450 | 0.0 | 518 |
| MS.gene84523.t1 | AT5G23810 | 58.876 | 445 | 178 | 3 | 19 | 458 | 21 | 465 | 0.0 | 517 |
| MS.gene84523.t1 | AT5G09220 | 52.596 | 443 | 207 | 2 | 16 | 455 | 38 | 480 | 0.0 | 516 |
| MS.gene84523.t1 | AT5G63850 | 52.135 | 445 | 210 | 2 | 16 | 457 | 11 | 455 | 6.04e-178 | 506 |
| MS.gene84523.t1 | AT1G44100 | 52.863 | 454 | 206 | 1 | 12 | 457 | 16 | 469 | 1.69e-177 | 506 |
| MS.gene84523.t1 | AT1G10010 | 49.574 | 470 | 228 | 3 | 1 | 462 | 2 | 470 | 3.55e-173 | 495 |
| MS.gene84523.t1 | AT1G10010 | 49.574 | 470 | 228 | 3 | 1 | 462 | 1 | 469 | 4.51e-173 | 494 |
| MS.gene84523.t1 | AT1G58360 | 48.043 | 460 | 234 | 2 | 2 | 457 | 15 | 473 | 2.33e-169 | 485 |
| MS.gene84523.t1 | AT5G49630 | 48.352 | 455 | 230 | 3 | 8 | 457 | 17 | 471 | 1.76e-164 | 473 |
| MS.gene84523.t1 | AT5G23810 | 60.377 | 318 | 123 | 2 | 19 | 333 | 21 | 338 | 4.88e-130 | 380 |
| MS.gene84523.t1 | AT5G23810 | 55.508 | 236 | 102 | 2 | 19 | 251 | 21 | 256 | 4.58e-86 | 265 |
| MS.gene84523.t1 | AT5G23810 | 54.974 | 191 | 83 | 2 | 19 | 206 | 21 | 211 | 2.78e-64 | 207 |
| MS.gene84523.t1 | AT5G23810 | 54.974 | 191 | 83 | 2 | 19 | 206 | 21 | 211 | 2.78e-64 | 207 |
| MS.gene84523.t1 | AT1G61270 | 26.923 | 442 | 282 | 8 | 22 | 456 | 32 | 439 | 3.27e-42 | 155 |
| MS.gene84523.t1 | AT5G40780 | 26.941 | 438 | 272 | 13 | 34 | 463 | 44 | 441 | 1.54e-38 | 145 |
| MS.gene84523.t1 | AT3G01760 | 25.694 | 432 | 284 | 12 | 22 | 446 | 30 | 431 | 2.45e-38 | 145 |
| MS.gene84523.t1 | AT1G24400 | 27.674 | 430 | 266 | 12 | 34 | 455 | 39 | 431 | 8.97e-37 | 140 |
| MS.gene84523.t1 | AT5G40780 | 26.559 | 433 | 270 | 13 | 39 | 463 | 1 | 393 | 2.72e-36 | 138 |
| MS.gene84523.t1 | AT5G40780 | 26.559 | 433 | 270 | 13 | 39 | 463 | 1 | 393 | 2.72e-36 | 138 |
| MS.gene84523.t1 | AT1G48640 | 27.068 | 399 | 256 | 8 | 34 | 429 | 51 | 417 | 1.66e-35 | 137 |
| MS.gene84523.t1 | AT1G25530 | 27.473 | 455 | 293 | 10 | 8 | 458 | 12 | 433 | 1.22e-34 | 134 |
| MS.gene84523.t1 | AT1G67640 | 27.506 | 429 | 268 | 9 | 34 | 455 | 39 | 431 | 2.41e-34 | 134 |
| MS.gene84523.t1 | AT1G71680 | 29.573 | 328 | 208 | 7 | 22 | 343 | 33 | 343 | 4.21e-31 | 123 |
| MS.gene84523.t1 | AT1G71680 | 27.536 | 414 | 260 | 9 | 22 | 429 | 33 | 412 | 2.60e-30 | 122 |
| MS.gene84523.t1 | AT1G08230 | 27.000 | 400 | 232 | 15 | 34 | 413 | 38 | 397 | 1.18e-17 | 85.5 |
| MS.gene84523.t1 | AT2G39890 | 24.566 | 403 | 244 | 17 | 54 | 442 | 63 | 419 | 1.76e-16 | 82.0 |
| MS.gene84523.t1 | AT2G39890 | 24.566 | 403 | 244 | 17 | 54 | 442 | 63 | 419 | 1.76e-16 | 82.0 |
| MS.gene84523.t1 | AT2G39890 | 24.566 | 403 | 244 | 17 | 54 | 442 | 4 | 360 | 2.27e-16 | 81.3 |
| MS.gene84523.t1 | AT2G36590 | 23.577 | 369 | 246 | 10 | 54 | 421 | 57 | 390 | 7.55e-15 | 76.6 |
| MS.gene84523.t1 | AT4G35180 | 25.180 | 278 | 192 | 7 | 23 | 297 | 57 | 321 | 7.22e-12 | 67.8 |
| MS.gene84523.t1 | AT4G35180 | 25.794 | 252 | 171 | 7 | 23 | 271 | 57 | 295 | 2.31e-11 | 65.5 |
Find 97 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTACTTCAACCAAGTTCT+AGG | 0.184744 | 3.1:+45965862 | MS.gene84523:CDS |
| TGCAGAAAATGGAAGAATTA+TGG | 0.189183 | 3.1:+45964621 | MS.gene84523:intron |
| TATTGGGAGCTATAAATTTC+TGG | 0.241934 | 3.1:+45965887 | MS.gene84523:CDS |
| TTGGAGCTTGGACTAGAAAA+TGG | 0.253711 | 3.1:+45965959 | MS.gene84523:CDS |
| CATATCATCACAGCAGTTAT+TGG | 0.260349 | 3.1:+45963470 | MS.gene84523:CDS |
| AGAAATCCTGATTCTGTAAC+TGG | 0.271295 | 3.1:+45963614 | MS.gene84523:CDS |
| TGCTTTGGATATGCAGCTTT+TGG | 0.275745 | 3.1:+45964950 | MS.gene84523:CDS |
| GTCACTGTGGTTGGATTTGT+TGG | 0.286199 | 3.1:+45966018 | MS.gene84523:CDS |
| GGAAATCTCTTGACAGGGTT+TGG | 0.296932 | 3.1:+45964986 | MS.gene84523:CDS |
| AAATTGGTTCAGGTAATAAA+AGG | 0.299928 | 3.1:+45963777 | MS.gene84523:intron |
| TTCTGTAACAATCAGATAAA+AGG | 0.300294 | 3.1:-45963595 | None:intergenic |
| TCATTTGGTTGGAGGATATC+AGG | 0.300513 | 3.1:+45965060 | MS.gene84523:CDS |
| CTTCAAATTACAAAAGCTTC+TGG | 0.300739 | 3.1:+45963296 | MS.gene84523:CDS |
| CTAGAAAATGGATTGTTCTA+AGG | 0.318873 | 3.1:+45965971 | MS.gene84523:CDS |
| TCCTTTACATACTCATTCAT+TGG | 0.319715 | 3.1:+45964445 | MS.gene84523:CDS |
| CTATCAGCTGTACTATATAT+TGG | 0.330424 | 3.1:-45965688 | None:intergenic |
| TATCTATGTTGTGGTTGCTT+TGG | 0.333177 | 3.1:+45964935 | MS.gene84523:CDS |
| TGTACAAAGTACATTTCAAC+TGG | 0.334153 | 3.1:-45965928 | None:intergenic |
| TCAAGAAGGATAATTGAATA+TGG | 0.335571 | 3.1:-45964730 | None:intergenic |
| CTAAAGTTGCTGACAAAATC+TGG | 0.337495 | 3.1:+45964668 | MS.gene84523:CDS |
| CAAAATCTGGTTAATCTTCC+AGG | 0.338409 | 3.1:+45964681 | MS.gene84523:CDS |
| AACCCTGTCAAGAGATTTCC+TGG | 0.353548 | 3.1:-45964983 | None:intergenic |
| GCAGAAAATGGAAGAATTAT+GGG | 0.355246 | 3.1:+45964622 | MS.gene84523:intron |
| AACCAAGTTCTAGGAGTATT+GGG | 0.356017 | 3.1:+45965871 | MS.gene84523:CDS |
| GCAATGTCAATAAGCCAATA+AGG | 0.356778 | 3.1:-45965019 | None:intergenic |
| AGAATTATGGGAAGTATAAC+AGG | 0.360907 | 3.1:+45964634 | MS.gene84523:CDS |
| AATTATCCTTCTTGAGATAC+AGG | 0.364268 | 3.1:+45964738 | MS.gene84523:CDS |
| CAACCAAGTTCTAGGAGTAT+TGG | 0.368080 | 3.1:+45965870 | MS.gene84523:CDS |
| ATCACAGCAGTTATTGGTTC+TGG | 0.378445 | 3.1:+45963476 | MS.gene84523:CDS |
| TGTTTGTATTATCATTCATT+TGG | 0.384293 | 3.1:+45965045 | MS.gene84523:CDS |
| TGCTTCCTTGTCACTGTGGT+TGG | 0.386242 | 3.1:+45966009 | MS.gene84523:CDS |
| GCATGGAGTACTGCTCAATT+AGG | 0.392253 | 3.1:+45963512 | MS.gene84523:CDS |
| ATAGAGGAAGTTTCACTTTG+TGG | 0.396172 | 3.1:-45965756 | None:intergenic |
| AATATATATATGGTGCTGTT+TGG | 0.398778 | 3.1:+45964346 | MS.gene84523:CDS |
| GGATCTCCATAACTTGGCTT+GGG | 0.421014 | 3.1:+45964399 | MS.gene84523:CDS |
| TGTATTATCATTCATTTGGT+TGG | 0.421033 | 3.1:+45965049 | MS.gene84523:CDS |
| CTGAAACCCAAGCCAAGTTA+TGG | 0.421752 | 3.1:-45964405 | None:intergenic |
| AGTGAGAAAATTAGTGGAAA+AGG | 0.428631 | 3.1:+45966060 | MS.gene84523:CDS |
| TACAGAAGAAAGTTGGAGCT+TGG | 0.429896 | 3.1:+45965947 | MS.gene84523:CDS |
| TCGTTCACAAAGCCACTGTT+GGG | 0.433351 | 3.1:-45965730 | None:intergenic |
| CGGATCTCCATAACTTGGCT+TGG | 0.438990 | 3.1:+45964398 | MS.gene84523:CDS |
| GGATTTGTTGGATCATTTGA+AGG | 0.441279 | 3.1:+45966030 | MS.gene84523:CDS |
| AACTAATGTCACCAAGTGCC+TGG | 0.445133 | 3.1:-45964699 | None:intergenic |
| AGCTATAAATTTCTGGCCAT+TGG | 0.449959 | 3.1:+45965894 | MS.gene84523:CDS |
| TATATAGTACAGCTGATAGA+TGG | 0.451887 | 3.1:+45965692 | MS.gene84523:CDS |
| ATCATAAGTGAGAAAATTAG+TGG | 0.459491 | 3.1:+45966054 | MS.gene84523:CDS |
| ATATGAGGCTAATATATATA+TGG | 0.460365 | 3.1:+45964336 | MS.gene84523:CDS |
| CCTAGAACTTGGTTGAAGTA+AGG | 0.463113 | 3.1:-45965862 | None:intergenic |
| ATCTCAAAAGAAGGTAATAG+AGG | 0.469814 | 3.1:-45965772 | None:intergenic |
| GCACAACAAAGCAAGAAAAC+TGG | 0.471757 | 3.1:-45963548 | None:intergenic |
| GATGCTGTTAGAGTTAATCT+TGG | 0.473459 | 3.1:+45963659 | MS.gene84523:CDS |
| ATTGTTTGATTCTCCGGTGG+AGG | 0.475409 | 3.1:-45964869 | None:intergenic |
| CCAAGCTCCTTGTAGATATG+AGG | 0.477208 | 3.1:+45964321 | MS.gene84523:CDS |
| ACACCAGGAAATCTCTTGAC+AGG | 0.477743 | 3.1:+45964980 | MS.gene84523:CDS |
| ATTATCATTCATTTGGTTGG+AGG | 0.478152 | 3.1:+45965052 | MS.gene84523:CDS |
| CTCCCAATACTCCTAGAACT+TGG | 0.478581 | 3.1:-45965873 | None:intergenic |
| ACTGCTCAATTAGGATGGAT+TGG | 0.481783 | 3.1:+45963521 | MS.gene84523:CDS |
| CATACCGGATCTCCATAACT+TGG | 0.488256 | 3.1:+45964393 | MS.gene84523:CDS |
| TACTTTGTACAGAAGAAAGT+TGG | 0.497035 | 3.1:+45965940 | MS.gene84523:CDS |
| TGGTTAATCTTCCAGGCACT+TGG | 0.501530 | 3.1:+45964688 | MS.gene84523:CDS |
| TCAAATTGCTATCATAAAGA+AGG | 0.504054 | 3.1:+45964295 | MS.gene84523:CDS |
| GATTGTAATGTCGTTCATAC+CGG | 0.514727 | 3.1:+45964378 | MS.gene84523:CDS |
| TCCAATGAATGAGTATGTAA+AGG | 0.518895 | 3.1:-45964446 | None:intergenic |
| AAAAGATTTATCTCAAAAGA+AGG | 0.519229 | 3.1:-45965781 | None:intergenic |
| ATCGTTCACAAAGCCACTGT+TGG | 0.519554 | 3.1:-45965731 | None:intergenic |
| ACAGGAGAAGTACTTCAAAC+TGG | 0.523712 | 3.1:-45963873 | None:intergenic |
| ACATTCTTCTATCTATGTTG+TGG | 0.526769 | 3.1:+45964926 | MS.gene84523:CDS |
| ATGAATGATAATACAAACAT+TGG | 0.532293 | 3.1:-45965041 | None:intergenic |
| CAAGCCAAGTTATGGAGATC+CGG | 0.534080 | 3.1:-45964397 | None:intergenic |
| GAAAAGAAACTACTCTTACA+TGG | 0.536174 | 3.1:+45963637 | MS.gene84523:CDS |
| AAGGATAATTGAATATGGAT+AGG | 0.542619 | 3.1:-45964725 | None:intergenic |
| AATAAAAGGACTTATGTGGC+TGG | 0.543815 | 3.1:+45963791 | MS.gene84523:CDS |
| GTACTTCAAACTGGTGGCTG+TGG | 0.546800 | 3.1:-45963864 | None:intergenic |
| CCTCATATCTACAAGGAGCT+TGG | 0.548780 | 3.1:-45964321 | None:intergenic |
| AGCTATGTGATTTCAACCAC+TGG | 0.557700 | 3.1:+45965823 | MS.gene84523:CDS |
| ACATACTCATTCATTGGACT+AGG | 0.574709 | 3.1:+45964451 | MS.gene84523:CDS |
| GGAGTACTGCTCAATTAGGA+TGG | 0.581347 | 3.1:+45963516 | MS.gene84523:CDS |
| AGGTAATAAAAGGACTTATG+TGG | 0.583654 | 3.1:+45963787 | MS.gene84523:intron |
| AAGGTACCTGTATCTCAAGA+AGG | 0.587507 | 3.1:-45964744 | None:intergenic |
| CACCAGGAAATCTCTTGACA+GGG | 0.588202 | 3.1:+45964981 | MS.gene84523:CDS |
| TGCTTGCTTCCTTGTCACTG+TGG | 0.589369 | 3.1:+45966005 | MS.gene84523:CDS |
| GCTCAATTAGGATGGATTGG+AGG | 0.591982 | 3.1:+45963524 | MS.gene84523:CDS |
| CACACTAGAGTCTCCTCCAC+CGG | 0.592296 | 3.1:+45964856 | MS.gene84523:CDS |
| ACTGGGAAATATATAGCCAA+TGG | 0.596364 | 3.1:-45965910 | None:intergenic |
| TGTAATGAAGATTGCAACCA+TGG | 0.609614 | 3.1:-45964903 | None:intergenic |
| GAAATCCTGATTCTGTAACT+GGG | 0.610267 | 3.1:+45963615 | MS.gene84523:CDS |
| TTCATTGTTTGATTCTCCGG+TGG | 0.612865 | 3.1:-45964872 | None:intergenic |
| CAAATCCAACCACAGTGACA+AGG | 0.616492 | 3.1:-45966014 | None:intergenic |
| TCATTCATTGGACTAGGACT+CGG | 0.632481 | 3.1:+45964457 | MS.gene84523:CDS |
| ATATTAGCCTCATATCTACA+AGG | 0.637550 | 3.1:-45964328 | None:intergenic |
| GGCAACACTAGTCCCATACA+AGG | 0.638874 | 3.1:-45963831 | None:intergenic |
| CGTTCACAAAGCCACTGTTG+GGG | 0.646020 | 3.1:-45965729 | None:intergenic |
| TCTGGTGCTTATGATGATGA+CGG | 0.661065 | 3.1:+45963314 | MS.gene84523:CDS |
| AAATAAAATTGCTAGTCCAG+TGG | 0.662970 | 3.1:-45965839 | None:intergenic |
| GGTGGCTGTGGTGAGTACAT+AGG | 0.663546 | 3.1:-45963852 | None:intergenic |
| GGAGAAGTACTTCAAACTGG+TGG | 0.678265 | 3.1:-45963870 | None:intergenic |
| GTACAAAGTACATTTCAACT+GGG | 0.683822 | 3.1:-45965927 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACTAAAATTATTAAATAAA+TGG | + | chr3.1:45965451-45965470 | MS.gene84523:intron | 10.0% |
| !!! | ATATTTATTGTACTAATTTT+AGG | + | chr3.1:45964116-45964135 | MS.gene84523:intron | 10.0% |
| !!! | ATTATTGTTTTTAATCTATA+TGG | + | chr3.1:45965638-45965657 | MS.gene84523:intron | 10.0% |
| !! | ATTAGAATATGAAATGTTTA+AGG | - | chr3.1:45964766-45964785 | None:intergenic | 15.0% |
| !! | ATTATTGTACTAATTAATAC+AGG | + | chr3.1:45964260-45964279 | MS.gene84523:intron | 15.0% |
| !! | GTATATGAAAAAAAATGAAT+TGG | - | chr3.1:45963394-45963413 | None:intergenic | 15.0% |
| !! | TTATTGTACTAATTAATACA+GGG | + | chr3.1:45964261-45964280 | MS.gene84523:intron | 15.0% |
| !!! | AATTACTAGTGAATTTTAAT+TGG | - | chr3.1:45965105-45965124 | None:intergenic | 15.0% |
| !!! | TTCATTTTTTTTCATATACA+TGG | + | chr3.1:45963395-45963414 | MS.gene84523:intron | 15.0% |
| !!! | TTTAATAATTTTAGTGAAGT+CGG | - | chr3.1:45965447-45965466 | None:intergenic | 15.0% |
| !! | AAAAGATTTATCTCAAAAGA+AGG | - | chr3.1:45965784-45965803 | None:intergenic | 20.0% |
| !! | ATAAATATGTATCATTAGCT+TGG | - | chr3.1:45964104-45964123 | None:intergenic | 20.0% |
| !! | ATATGAGGCTAATATATATA+TGG | + | chr3.1:45964336-45964355 | MS.gene84523:CDS | 20.0% |
| !! | ATGAATGATAATACAAACAT+TGG | - | chr3.1:45965044-45965063 | None:intergenic | 20.0% |
| !! | TAACAGTTATAACTTGAAAT+TGG | + | chr3.1:45963761-45963780 | MS.gene84523:intron | 20.0% |
| !! | TGTTTGTATTATCATTCATT+TGG | + | chr3.1:45965045-45965064 | MS.gene84523:CDS | 20.0% |
| !! | TTAAGTTATGAGAAATCAAA+AGG | - | chr3.1:45965152-45965171 | None:intergenic | 20.0% |
| !!! | ATTTCAAGTTATAACTGTTA+TGG | - | chr3.1:45963761-45963780 | None:intergenic | 20.0% |
| !!! | TAATTTTAGGTAGTTTGTTT+GGG | + | chr3.1:45964129-45964148 | MS.gene84523:intron | 20.0% |
| !!! | TAGTGAATTTTAATTGGTAA+GGG | - | chr3.1:45965099-45965118 | None:intergenic | 20.0% |
| !!! | TTTTGATTTCTCATAACTTA+AGG | + | chr3.1:45965151-45965170 | MS.gene84523:intron | 20.0% |
| ! | AAGGATAATTGAATATGGAT+AGG | - | chr3.1:45964728-45964747 | None:intergenic | 25.0% |
| ! | AATTGTTGTGACAATTATTG+TGG | - | chr3.1:45964538-45964557 | None:intergenic | 25.0% |
| ! | ATCATAAGTGAGAAAATTAG+TGG | + | chr3.1:45966054-45966073 | MS.gene84523:CDS | 25.0% |
| ! | ATTGTTGTGACAATTATTGT+GGG | - | chr3.1:45964537-45964556 | None:intergenic | 25.0% |
| ! | CAAATAACAAAACATAGCAT+AGG | - | chr3.1:45965578-45965597 | None:intergenic | 25.0% |
| ! | TATTGAATTATGTTGAGAAC+AGG | + | chr3.1:45964832-45964851 | MS.gene84523:intron | 25.0% |
| ! | TCAAATTGCTATCATAAAGA+AGG | + | chr3.1:45964295-45964314 | MS.gene84523:CDS | 25.0% |
| ! | TCAAGAAGGATAATTGAATA+TGG | - | chr3.1:45964733-45964752 | None:intergenic | 25.0% |
| ! | TGTATTATCATTCATTTGGT+TGG | + | chr3.1:45965049-45965068 | MS.gene84523:CDS | 25.0% |
| ! | TTCTGTAACAATCAGATAAA+AGG | - | chr3.1:45963598-45963617 | None:intergenic | 25.0% |
| !! | AAATTGGTTCAGGTAATAAA+AGG | + | chr3.1:45963777-45963796 | MS.gene84523:intron | 25.0% |
| !! | ACTTCATTGAAACTTTTGAA+AGG | + | chr3.1:45965267-45965286 | MS.gene84523:intron | 25.0% |
| !! | GACTTATTTCCTTTTCTTTT+AGG | + | chr3.1:45963918-45963937 | MS.gene84523:intron | 25.0% |
| !! | TTATAACTTGAAATTGGTTC+AGG | + | chr3.1:45963767-45963786 | MS.gene84523:intron | 25.0% |
| !! | TTCAATTTTTGACCTTGTAT+GGG | + | chr3.1:45963819-45963838 | MS.gene84523:CDS | 25.0% |
| !! | TTTTTCATTGTTTGATTCTC+CGG | - | chr3.1:45964878-45964897 | None:intergenic | 25.0% |
| !!! | AATATATATATGGTGCTGTT+TGG | + | chr3.1:45964346-45964365 | MS.gene84523:CDS | 25.0% |
| !!! | AATTTTAGGTAGTTTGTTTG+GGG | + | chr3.1:45964130-45964149 | MS.gene84523:intron | 25.0% |
| !!! | CTAATTTTAGGTAGTTTGTT+TGG | + | chr3.1:45964128-45964147 | MS.gene84523:intron | 25.0% |
| !!! | CTAGTGAATTTTAATTGGTA+AGG | - | chr3.1:45965100-45965119 | None:intergenic | 25.0% |
| !!! | CTTCATTGAAACTTTTGAAA+GGG | + | chr3.1:45965268-45965287 | MS.gene84523:intron | 25.0% |
| !!! | CTTTTGAGATAAATCTTTTC+AGG | + | chr3.1:45965785-45965804 | MS.gene84523:CDS | 25.0% |
| !!! | GCTATTTCTATATAGAACAA+AGG | + | chr3.1:45963983-45964002 | MS.gene84523:intron | 25.0% |
| !!! | TATTGAATATTTGTTTCTGC+AGG | + | chr3.1:45963425-45963444 | MS.gene84523:intron | 25.0% |
| !!! | TTGGATTTTTTGAACCTTAT+TGG | + | chr3.1:45965005-45965024 | MS.gene84523:CDS | 25.0% |
| AAACTCAACGTCTATATTTC+AGG | - | chr3.1:45964590-45964609 | None:intergenic | 30.0% | |
| AAATAAAATTGCTAGTCCAG+TGG | - | chr3.1:45965842-45965861 | None:intergenic | 30.0% | |
| AACAATGAAAAAAGCTTCCA+TGG | + | chr3.1:45964886-45964905 | MS.gene84523:CDS | 30.0% | |
| AACTCAACGTCTATATTTCA+GGG | - | chr3.1:45964589-45964608 | None:intergenic | 30.0% | |
| AATTATCCTTCTTGAGATAC+AGG | + | chr3.1:45964738-45964757 | MS.gene84523:CDS | 30.0% | |
| ACATTCTTCTATCTATGTTG+TGG | + | chr3.1:45964926-45964945 | MS.gene84523:CDS | 30.0% | |
| AGGTAATAAAAGGACTTATG+TGG | + | chr3.1:45963787-45963806 | MS.gene84523:intron | 30.0% | |
| AGTGAGAAAATTAGTGGAAA+AGG | + | chr3.1:45966060-45966079 | MS.gene84523:CDS | 30.0% | |
| ATCTCAAAAGAAGGTAATAG+AGG | - | chr3.1:45965775-45965794 | None:intergenic | 30.0% | |
| ATTATCATTCATTTGGTTGG+AGG | + | chr3.1:45965052-45965071 | MS.gene84523:CDS | 30.0% | |
| CAAAAGTTTCAATGAAGTGT+CGG | - | chr3.1:45965265-45965284 | None:intergenic | 30.0% | |
| CAAATAGAGCCTAAAAGAAA+AGG | - | chr3.1:45963930-45963949 | None:intergenic | 30.0% | |
| CATACAAGGTCAAAAATTGA+AGG | - | chr3.1:45963820-45963839 | None:intergenic | 30.0% | |
| CTATCAGCTGTACTATATAT+TGG | - | chr3.1:45965691-45965710 | None:intergenic | 30.0% | |
| CTTCAAATTACAAAAGCTTC+TGG | + | chr3.1:45963296-45963315 | MS.gene84523:CDS | 30.0% | |
| GAAAAGAAACTACTCTTACA+TGG | + | chr3.1:45963637-45963656 | MS.gene84523:CDS | 30.0% | |
| GCAGAAAATGGAAGAATTAT+GGG | + | chr3.1:45964622-45964641 | MS.gene84523:intron | 30.0% | |
| GTACAAAGTACATTTCAACT+GGG | - | chr3.1:45965930-45965949 | None:intergenic | 30.0% | |
| GTCACAACAATTGCAAAAAA+TGG | + | chr3.1:45964546-45964565 | MS.gene84523:intron | 30.0% | |
| GTTTCATGAATTTGACATGA+GGG | - | chr3.1:45965189-45965208 | None:intergenic | 30.0% | |
| TAACAAAACATAGCATAGGT+TGG | - | chr3.1:45965574-45965593 | None:intergenic | 30.0% | |
| TACTTTGTACAGAAGAAAGT+TGG | + | chr3.1:45965940-45965959 | MS.gene84523:CDS | 30.0% | |
| TATAAAGGTTACCGATATAC+CGG | - | chr3.1:45964161-45964180 | None:intergenic | 30.0% | |
| TATATAGTACAGCTGATAGA+TGG | + | chr3.1:45965692-45965711 | MS.gene84523:CDS | 30.0% | |
| TATTGGGAGCTATAAATTTC+TGG | + | chr3.1:45965887-45965906 | MS.gene84523:CDS | 30.0% | |
| TCCAATGAATGAGTATGTAA+AGG | - | chr3.1:45964449-45964468 | None:intergenic | 30.0% | |
| TCCTTTACATACTCATTCAT+TGG | + | chr3.1:45964445-45964464 | MS.gene84523:CDS | 30.0% | |
| TGCAGAAAATGGAAGAATTA+TGG | + | chr3.1:45964621-45964640 | MS.gene84523:intron | 30.0% | |
| TGTACAAAGTACATTTCAAC+TGG | - | chr3.1:45965931-45965950 | None:intergenic | 30.0% | |
| TGTTTCATGAATTTGACATG+AGG | - | chr3.1:45965190-45965209 | None:intergenic | 30.0% | |
| TTTAATTGGTAAGGGACTAA+GGG | - | chr3.1:45965091-45965110 | None:intergenic | 30.0% | |
| ! | AACAGCTTATAACTTGTATG+AGG | - | chr3.1:45964031-45964050 | None:intergenic | 30.0% |
| ! | AGAATTATGGGAAGTATAAC+AGG | + | chr3.1:45964634-45964653 | MS.gene84523:CDS | 30.0% |
| ! | ATATTAGCCTCATATCTACA+AGG | - | chr3.1:45964331-45964350 | None:intergenic | 30.0% |
| ! | CTTCAATTTTTGACCTTGTA+TGG | + | chr3.1:45963818-45963837 | MS.gene84523:CDS | 30.0% |
| ! | CTTTTCTTTTAGGCTCTATT+TGG | + | chr3.1:45963928-45963947 | MS.gene84523:intron | 30.0% |
| !! | CTAGAAAATGGATTGTTCTA+AGG | + | chr3.1:45965971-45965990 | MS.gene84523:CDS | 30.0% |
| !! | TTTTAATTGGTAAGGGACTA+AGG | - | chr3.1:45965092-45965111 | None:intergenic | 30.0% |
| AACTTCAGAAGAGACATAGT+TGG | + | chr3.1:45965497-45965516 | MS.gene84523:intron | 35.0% | |
| AAGTCGTCCATATTCAAGAA+GGG | - | chr3.1:45963903-45963922 | None:intergenic | 35.0% | |
| AATAAAAGGACTTATGTGGC+TGG | + | chr3.1:45963791-45963810 | MS.gene84523:CDS | 35.0% | |
| AATCGCTTTCTTGCAGAAAA+TGG | + | chr3.1:45964610-45964629 | MS.gene84523:intron | 35.0% | |
| ACATACTCATTCATTGGACT+AGG | + | chr3.1:45964451-45964470 | MS.gene84523:CDS | 35.0% | |
| ACTGGGAAATATATAGCCAA+TGG | - | chr3.1:45965913-45965932 | None:intergenic | 35.0% | |
| AGAAATCCTGATTCTGTAAC+TGG | + | chr3.1:45963614-45963633 | MS.gene84523:CDS | 35.0% | |
| ATAGAGGAAGTTTCACTTTG+TGG | - | chr3.1:45965759-45965778 | None:intergenic | 35.0% | |
| ATATTCAAGAAGGGTTGAAC+AGG | - | chr3.1:45963894-45963913 | None:intergenic | 35.0% | |
| CAAAATCTGGTTAATCTTCC+AGG | + | chr3.1:45964681-45964700 | MS.gene84523:CDS | 35.0% | |
| CATATCATCACAGCAGTTAT+TGG | + | chr3.1:45963470-45963489 | MS.gene84523:CDS | 35.0% | |
| CGCGGGAAAAAAAACTATAA+AGG | - | chr3.1:45964176-45964195 | None:intergenic | 35.0% | |
| CTAAAGTTGCTGACAAAATC+TGG | + | chr3.1:45964668-45964687 | MS.gene84523:CDS | 35.0% | |
| GAAATCCTGATTCTGTAACT+GGG | + | chr3.1:45963615-45963634 | MS.gene84523:CDS | 35.0% | |
| GATGCTGTTAGAGTTAATCT+TGG | + | chr3.1:45963659-45963678 | MS.gene84523:CDS | 35.0% | |
| GATTGTAATGTCGTTCATAC+CGG | + | chr3.1:45964378-45964397 | MS.gene84523:CDS | 35.0% | |
| GCAATGTCAATAAGCCAATA+AGG | - | chr3.1:45965022-45965041 | None:intergenic | 35.0% | |
| TAAGTCGTCCATATTCAAGA+AGG | - | chr3.1:45963904-45963923 | None:intergenic | 35.0% | |
| TATCTATGTTGTGGTTGCTT+TGG | + | chr3.1:45964935-45964954 | MS.gene84523:CDS | 35.0% | |
| TCAAAAAAATACCCCAACAG+TGG | + | chr3.1:45965718-45965737 | MS.gene84523:CDS | 35.0% | |
| TGTAATGAAGATTGCAACCA+TGG | - | chr3.1:45964906-45964925 | None:intergenic | 35.0% | |
| TGTTCAACCCTTCTTGAATA+TGG | + | chr3.1:45963893-45963912 | MS.gene84523:intron | 35.0% | |
| TTGTGACAATTATTGTGGGA+CGG | - | chr3.1:45964533-45964552 | None:intergenic | 35.0% | |
| !! | AACCAAGTTCTAGGAGTATT+GGG | + | chr3.1:45965871-45965890 | MS.gene84523:CDS | 35.0% |
| !! | AGCTATAAATTTCTGGCCAT+TGG | + | chr3.1:45965894-45965913 | MS.gene84523:CDS | 35.0% |
| !! | AGGAAATGTAAAAAGTGCTG+TGG | + | chr3.1:45963445-45963464 | MS.gene84523:intron | 35.0% |
| !! | GGATTTGTTGGATCATTTGA+AGG | + | chr3.1:45966030-45966049 | MS.gene84523:CDS | 35.0% |
| !!! | TAGTTTGTTTGGGGTTTTTC+CGG | + | chr3.1:45964139-45964158 | MS.gene84523:intron | 35.0% |
| ACTGCTCAATTAGGATGGAT+TGG | + | chr3.1:45963521-45963540 | MS.gene84523:CDS | 40.0% | |
| AGCATTAGTGTAGTGTATGG+AGG | + | chr3.1:45965381-45965400 | MS.gene84523:intron | 40.0% | |
| AGCTATGTGATTTCAACCAC+TGG | + | chr3.1:45965823-45965842 | MS.gene84523:CDS | 40.0% | |
| CCTAGAACTTGGTTGAAGTA+AGG | - | chr3.1:45965865-45965884 | None:intergenic | 40.0% | |
| CCTTACTTCAACCAAGTTCT+AGG | + | chr3.1:45965862-45965881 | MS.gene84523:CDS | 40.0% | |
| GCACAACAAAGCAAGAAAAC+TGG | - | chr3.1:45963551-45963570 | None:intergenic | 40.0% | |
| GTCAGCATTAGTGTAGTGTA+TGG | + | chr3.1:45965378-45965397 | MS.gene84523:intron | 40.0% | |
| TACAGAAGAAAGTTGGAGCT+TGG | + | chr3.1:45965947-45965966 | MS.gene84523:CDS | 40.0% | |
| TCATTTGGTTGGAGGATATC+AGG | + | chr3.1:45965060-45965079 | MS.gene84523:CDS | 40.0% | |
| TTCATTGTTTGATTCTCCGG+TGG | - | chr3.1:45964875-45964894 | None:intergenic | 40.0% | |
| ! | AAGGTACCTGTATCTCAAGA+AGG | - | chr3.1:45964747-45964766 | None:intergenic | 40.0% |
| ! | CTTTTCCCAGTTACAGAATC+AGG | - | chr3.1:45963623-45963642 | None:intergenic | 40.0% |
| ! | TCATTCATTGGACTAGGACT+CGG | + | chr3.1:45964457-45964476 | MS.gene84523:CDS | 40.0% |
| ! | TCTGGTGCTTATGATGATGA+CGG | + | chr3.1:45963314-45963333 | MS.gene84523:CDS | 40.0% |
| ! | TTGGAGCTTGGACTAGAAAA+TGG | + | chr3.1:45965959-45965978 | MS.gene84523:CDS | 40.0% |
| ! | TTGGGGTTTTTCCGGTATAT+CGG | + | chr3.1:45964147-45964166 | MS.gene84523:intron | 40.0% |
| !! | ACAGGAGAAGTACTTCAAAC+TGG | - | chr3.1:45963876-45963895 | None:intergenic | 40.0% |
| !! | ATCACAGCAGTTATTGGTTC+TGG | + | chr3.1:45963476-45963495 | MS.gene84523:CDS | 40.0% |
| !! | CAACCAAGTTCTAGGAGTAT+TGG | + | chr3.1:45965870-45965889 | MS.gene84523:CDS | 40.0% |
| !! | TGCTTTGGATATGCAGCTTT+TGG | + | chr3.1:45964950-45964969 | MS.gene84523:CDS | 40.0% |
| !!! | TGGTTCTGGTGTTTTGTCAT+TGG | + | chr3.1:45963490-45963509 | MS.gene84523:CDS | 40.0% |
| AACCCTGTCAAGAGATTTCC+TGG | - | chr3.1:45964986-45965005 | None:intergenic | 45.0% | |
| AACTAATGTCACCAAGTGCC+TGG | - | chr3.1:45964702-45964721 | None:intergenic | 45.0% | |
| ACACCAGGAAATCTCTTGAC+AGG | + | chr3.1:45964980-45964999 | MS.gene84523:CDS | 45.0% | |
| ATCGTTCACAAAGCCACTGT+TGG | - | chr3.1:45965734-45965753 | None:intergenic | 45.0% | |
| ATTGTTTGATTCTCCGGTGG+AGG | - | chr3.1:45964872-45964891 | None:intergenic | 45.0% | |
| CAAATCCAACCACAGTGACA+AGG | - | chr3.1:45966017-45966036 | None:intergenic | 45.0% | |
| CAAGCCAAGTTATGGAGATC+CGG | - | chr3.1:45964400-45964419 | None:intergenic | 45.0% | |
| CACCAGGAAATCTCTTGACA+GGG | + | chr3.1:45964981-45965000 | MS.gene84523:CDS | 45.0% | |
| CATACCGGATCTCCATAACT+TGG | + | chr3.1:45964393-45964412 | MS.gene84523:CDS | 45.0% | |
| CCAAGCTCCTTGTAGATATG+AGG | + | chr3.1:45964321-45964340 | MS.gene84523:CDS | 45.0% | |
| CCTCATATCTACAAGGAGCT+TGG | - | chr3.1:45964324-45964343 | None:intergenic | 45.0% | |
| CTCCCAATACTCCTAGAACT+TGG | - | chr3.1:45965876-45965895 | None:intergenic | 45.0% | |
| CTGAAACCCAAGCCAAGTTA+TGG | - | chr3.1:45964408-45964427 | None:intergenic | 45.0% | |
| GACAATTATTGTGGGACGGA+TGG | - | chr3.1:45964529-45964548 | None:intergenic | 45.0% | |
| GACGGACATGCAAAAAGAAC+TGG | + | chr3.1:45963332-45963351 | MS.gene84523:CDS | 45.0% | |
| GGAAATCTCTTGACAGGGTT+TGG | + | chr3.1:45964986-45965005 | MS.gene84523:CDS | 45.0% | |
| GGATCTCCATAACTTGGCTT+GGG | + | chr3.1:45964399-45964418 | MS.gene84523:CDS | 45.0% | |
| GTCACTGTGGTTGGATTTGT+TGG | + | chr3.1:45966018-45966037 | MS.gene84523:CDS | 45.0% | |
| TCGTTCACAAAGCCACTGTT+GGG | - | chr3.1:45965733-45965752 | None:intergenic | 45.0% | |
| TGGTTAATCTTCCAGGCACT+TGG | + | chr3.1:45964688-45964707 | MS.gene84523:CDS | 45.0% | |
| ! | AAGAAGCACAACAAACTCGC+GGG | - | chr3.1:45964193-45964212 | None:intergenic | 45.0% |
| ! | CAAGAAGCACAACAAACTCG+CGG | - | chr3.1:45964194-45964213 | None:intergenic | 45.0% |
| ! | CTGGTGTTTTGTCATTGGCA+TGG | + | chr3.1:45963495-45963514 | MS.gene84523:CDS | 45.0% |
| ! | TGACGTTGTCACTTCAGTGT+CGG | - | chr3.1:45965304-45965323 | None:intergenic | 45.0% |
| !! | GCATGGAGTACTGCTCAATT+AGG | + | chr3.1:45963512-45963531 | MS.gene84523:CDS | 45.0% |
| !! | GCTCAATTAGGATGGATTGG+AGG | + | chr3.1:45963524-45963543 | MS.gene84523:CDS | 45.0% |
| !! | GGAGAAGTACTTCAAACTGG+TGG | - | chr3.1:45963873-45963892 | None:intergenic | 45.0% |
| !! | GGAGTACTGCTCAATTAGGA+TGG | + | chr3.1:45963516-45963535 | MS.gene84523:CDS | 45.0% |
| !! | ACTAAAATTATTAAATAAAT+GGG | + | chr3.1:45965452-45965471 | MS.gene84523:intron | 5.0% |
| CGGATCTCCATAACTTGGCT+TGG | + | chr3.1:45964398-45964417 | MS.gene84523:CDS | 50.0% | |
| CGTTCACAAAGCCACTGTTG+GGG | - | chr3.1:45965732-45965751 | None:intergenic | 50.0% | |
| GGCAACACTAGTCCCATACA+AGG | - | chr3.1:45963834-45963853 | None:intergenic | 50.0% | |
| GTACTTCAAACTGGTGGCTG+TGG | - | chr3.1:45963867-45963886 | None:intergenic | 50.0% | |
| TGCTTCCTTGTCACTGTGGT+TGG | + | chr3.1:45966009-45966028 | MS.gene84523:CDS | 50.0% | |
| TGCTTGCTTCCTTGTCACTG+TGG | + | chr3.1:45966005-45966024 | MS.gene84523:CDS | 50.0% | |
| !! | GCTTTTGGAGATGCTACACC+AGG | + | chr3.1:45964965-45964984 | MS.gene84523:CDS | 50.0% |
| CACACTAGAGTCTCCTCCAC+CGG | + | chr3.1:45964856-45964875 | MS.gene84523:CDS | 55.0% | |
| GGTGGCTGTGGTGAGTACAT+AGG | - | chr3.1:45963855-45963874 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 45963278 | 45966086 | 45963278 | ID=MS.gene84523 |
| chr3.1 | mRNA | 45963278 | 45966086 | 45963278 | ID=MS.gene84523.t1;Parent=MS.gene84523 |
| chr3.1 | exon | 45963278 | 45963353 | 45963278 | ID=MS.gene84523.t1.exon1;Parent=MS.gene84523.t1 |
| chr3.1 | CDS | 45963278 | 45963353 | 45963278 | ID=cds.MS.gene84523.t1;Parent=MS.gene84523.t1 |
| chr3.1 | exon | 45963447 | 45963680 | 45963447 | ID=MS.gene84523.t1.exon2;Parent=MS.gene84523.t1 |
| chr3.1 | CDS | 45963447 | 45963680 | 45963447 | ID=cds.MS.gene84523.t1;Parent=MS.gene84523.t1 |
| chr3.1 | exon | 45963789 | 45963882 | 45963789 | ID=MS.gene84523.t1.exon3;Parent=MS.gene84523.t1 |
| chr3.1 | CDS | 45963789 | 45963882 | 45963789 | ID=cds.MS.gene84523.t1;Parent=MS.gene84523.t1 |
| chr3.1 | exon | 45964282 | 45964496 | 45964282 | ID=MS.gene84523.t1.exon4;Parent=MS.gene84523.t1 |
| chr3.1 | CDS | 45964282 | 45964496 | 45964282 | ID=cds.MS.gene84523.t1;Parent=MS.gene84523.t1 |
| chr3.1 | exon | 45964626 | 45964759 | 45964626 | ID=MS.gene84523.t1.exon5;Parent=MS.gene84523.t1 |
| chr3.1 | CDS | 45964626 | 45964759 | 45964626 | ID=cds.MS.gene84523.t1;Parent=MS.gene84523.t1 |
| chr3.1 | exon | 45964854 | 45965081 | 45964854 | ID=MS.gene84523.t1.exon6;Parent=MS.gene84523.t1 |
| chr3.1 | CDS | 45964854 | 45965081 | 45964854 | ID=cds.MS.gene84523.t1;Parent=MS.gene84523.t1 |
| chr3.1 | exon | 45965676 | 45966086 | 45965676 | ID=MS.gene84523.t1.exon7;Parent=MS.gene84523.t1 |
| chr3.1 | CDS | 45965676 | 45966086 | 45965676 | ID=cds.MS.gene84523.t1;Parent=MS.gene84523.t1 |
| Gene Sequence |
| Protein sequence |
