AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86173


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86173.t1 MTR_5g033260 91.623 382 32 0 1 382 1 382 0.0 730
MS.gene86173.t1 MTR_8g432640 84.031 382 61 0 1 382 1 382 0.0 674
MS.gene86173.t1 MTR_3g088925 52.116 378 179 2 3 379 4 380 2.07e-140 405
MS.gene86173.t1 MTR_3g088945 51.587 378 181 2 3 379 4 380 4.40e-139 402
MS.gene86173.t1 MTR_7g107690 49.866 373 187 0 2 374 4 376 1.99e-138 400
MS.gene86173.t1 MTR_3g088955 51.323 378 182 2 3 379 4 380 3.16e-138 400
MS.gene86173.t1 MTR_7g107710 50.667 375 183 2 1 374 1 374 3.81e-135 391
MS.gene86173.t1 MTR_4g051642 51.587 378 180 3 3 379 4 379 2.21e-134 390
MS.gene86173.t1 MTR_3g109520 46.113 373 195 2 7 374 40 411 5.49e-122 359
MS.gene86173.t1 MTR_1g069275 47.507 381 184 6 7 378 26 399 3.99e-119 352
MS.gene86173.t1 MTR_7g099330 46.419 377 190 4 7 378 25 394 2.06e-118 350
MS.gene86173.t1 MTR_1g008380 44.297 377 203 3 7 378 43 417 5.10e-118 349
MS.gene86173.t1 MTR_6g086870 45.669 381 196 4 7 378 21 399 5.10e-118 348
MS.gene86173.t1 MTR_1g046230 45.573 384 198 6 7 382 25 405 3.55e-117 347
MS.gene86173.t1 MTR_1g011630 44.562 377 198 5 7 378 17 387 2.02e-115 342
MS.gene86173.t1 MTR_3g096030 74.725 182 22 1 1 182 1 158 1.99e-91 271
MS.gene86173.t1 MTR_7g099160 44.118 306 159 4 78 378 217 515 2.84e-83 263
MS.gene86173.t1 MTR_3g096020 52.212 113 16 3 212 323 1 76 6.93e-23 100
MS.gene86173.t1 MTR_2g450310 24.538 379 215 13 3 316 2 374 1.94e-14 75.1
MS.gene86173.t1 MTR_8g037910 25.359 209 130 4 6 190 4 210 7.53e-13 68.6
MS.gene86173.t1 MTR_8g037910 25.359 209 130 4 6 190 4 210 1.18e-12 68.6
MS.gene86173.t1 MTR_8g037910 25.359 209 130 4 6 190 4 210 1.97e-12 68.6
MS.gene86173.t1 MTR_8g037880 23.874 222 142 5 6 202 4 223 3.08e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86173.t1 AT1G48910 56.720 372 161 0 3 374 2 373 7.86e-157 446
MS.gene86173.t1 AT1G21430 51.206 373 177 4 6 376 9 378 4.81e-133 386
MS.gene86173.t1 AT1G04610 47.606 376 187 5 7 374 38 411 2.91e-123 363
MS.gene86173.t1 AT5G11320 46.154 377 190 4 7 378 18 386 1.64e-120 355
MS.gene86173.t1 AT5G25620 46.053 380 195 5 7 379 33 409 1.11e-119 353
MS.gene86173.t1 AT5G25620 46.438 379 193 5 7 378 33 408 2.00e-119 353
MS.gene86173.t1 AT1G04180 45.383 379 197 5 7 379 26 400 4.72e-118 349
MS.gene86173.t1 AT5G43890 45.526 380 198 5 7 379 26 403 4.81e-118 349
MS.gene86173.t1 AT4G28720 44.531 384 203 6 7 382 26 407 3.67e-116 345
MS.gene86173.t1 AT4G13260 44.855 379 203 2 7 380 29 406 6.23e-115 341
MS.gene86173.t1 AT4G32540 44.180 378 198 5 7 378 22 392 2.59e-114 339
MS.gene86173.t1 AT4G32540 44.327 379 198 5 7 378 22 394 3.11e-114 339
MS.gene86173.t1 AT2G33230 44.474 380 200 5 7 378 33 409 4.81e-111 332
MS.gene86173.t1 AT5G11320 46.130 323 162 3 7 324 18 333 3.89e-101 304
MS.gene86173.t1 AT4G13260 47.163 282 144 1 7 283 29 310 7.05e-91 276
MS.gene86173.t1 AT4G13260 41.554 296 167 2 90 380 9 303 2.80e-74 233
MS.gene86173.t1 AT1G62560 25.581 215 127 6 6 190 13 224 1.97e-13 71.6
MS.gene86173.t1 AT1G62560 25.000 228 138 6 6 203 13 237 2.92e-13 71.2
MS.gene86173.t1 AT1G19250 23.298 382 217 17 1 315 8 380 5.61e-12 67.4
MS.gene86173.t1 AT1G65860 22.566 226 145 6 6 203 13 236 7.68e-11 63.9
MS.gene86173.t1 AT1G12140 25.281 178 120 5 36 203 63 237 9.44e-11 63.5
MS.gene86173.t1 AT1G12140 25.281 178 120 5 36 203 63 237 9.44e-11 63.5

Find 100 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGATTTATCGTCCCAAAT+TGG 0.218572 5.1:+24595387 MS.gene86173:CDS
GTATTGAAGGAATTGGTATT+TGG 0.229329 5.1:-24593515 None:intergenic
CATTTGTAAAGGTCCCAATT+TGG 0.241094 5.1:-24595401 None:intergenic
AATTATGAAAATTAAAAGTT+TGG 0.248270 5.1:-24596220 None:intergenic
ATTGTAGGTGCTGGTCCTTC+TGG 0.274701 5.1:+24593313 MS.gene86173:CDS
GGATGCTATCATTACTTTAT+CGG 0.293233 5.1:+24595333 MS.gene86173:CDS
AGGTAGGTTGGGCCTGAGGG+TGG 0.310193 5.1:-24593490 None:intergenic
TTACAAATGAAGAATCTTAC+AGG 0.315816 5.1:+24595415 MS.gene86173:CDS
ATGATTGTTGTGCTTCTCTT+TGG 0.323198 5.1:+24593395 MS.gene86173:CDS
ATATGAATCAAAAGAGGTTT+TGG 0.328118 5.1:+24593795 MS.gene86173:CDS
CTGAGGGTGGGTGAGGCATG+AGG 0.329207 5.1:-24593477 None:intergenic
GGACTTCGAACGACAATAGA+TGG 0.338818 5.1:-24593880 None:intergenic
TTATCGGCAAAACTAAAATA+TGG 0.345197 5.1:+24595349 MS.gene86173:CDS
GAACACTATAGAAGGGATAT+TGG 0.347771 5.1:+24593642 MS.gene86173:CDS
ATTTGTAAAGGTCCCAATTT+GGG 0.347806 5.1:-24595400 None:intergenic
AGGCTTGTGGGGAGTCAAAA+TGG 0.349213 5.1:+24596169 MS.gene86173:CDS
TGTCTATGTATTGAAGGAAT+TGG 0.353488 5.1:-24593522 None:intergenic
TGGAACTGTCGAAAAGATTA+AGG 0.360924 5.1:+24595459 MS.gene86173:CDS
GGCTACAAAAGCATAACTAA+TGG 0.367252 5.1:+24595841 MS.gene86173:CDS
GAAACAAAGAACACTATAGA+AGG 0.371049 5.1:+24593634 MS.gene86173:CDS
CACTCTAAATATTACAAATC+TGG 0.373703 5.1:+24593766 MS.gene86173:CDS
TTATTCAGTCCAGGCACATT+AGG 0.380732 5.1:-24593724 None:intergenic
GTTGGGCCTGAGGGTGGGTG+AGG 0.384881 5.1:-24593484 None:intergenic
ATCTATTGTCGTTCGAAGTC+CGG 0.385488 5.1:+24593882 MS.gene86173:CDS
GATTAAGGAGGGATCTATAA+AGG 0.408201 5.1:+24595474 MS.gene86173:CDS
GGGATTTATCGTCCCAAATT+GGG 0.412423 5.1:+24595388 MS.gene86173:CDS
CATATTTGTCTATGTATTGA+AGG 0.420134 5.1:-24593528 None:intergenic
CATAACTAATGGGTGGCTTA+AGG 0.420449 5.1:+24595852 MS.gene86173:CDS
GAATCCACAGTTGTAATTGT+AGG 0.425297 5.1:+24593298 MS.gene86173:CDS
GGGACGATAAATCCCGTACT+TGG 0.427951 5.1:-24595380 None:intergenic
ATGGGTTAGCACCCGAGTTA+TGG 0.434610 5.1:-24593861 None:intergenic
ACTCAACTGTGCGACAATAG+TGG 0.435776 5.1:-24593573 None:intergenic
CTCATGCCTCACCCACCCTC+AGG 0.443220 5.1:+24593478 MS.gene86173:CDS
ATTGTTGTGCTTCTCTTTGG+AGG 0.448516 5.1:+24593398 MS.gene86173:CDS
AAATATGCTCTTAATGAGAA+AGG 0.450742 5.1:+24596074 MS.gene86173:CDS
GTAAGATTCTTCATTTGTAA+AGG 0.451233 5.1:-24595412 None:intergenic
ATAGCATCCACAATAGCAAC+TGG 0.454424 5.1:-24595319 None:intergenic
GCTACAAAAGCATAACTAAT+GGG 0.458461 5.1:+24595842 MS.gene86173:CDS
GGTATTTGGATAGGTAGGTT+GGG 0.467624 5.1:-24593501 None:intergenic
TATGGTGATTTGTCCAAGTA+CGG 0.467911 5.1:+24595367 MS.gene86173:CDS
GGATAGGTAGGTTGGGCCTG+AGG 0.468970 5.1:-24593494 None:intergenic
AATATGCTCTTAATGAGAAA+GGG 0.471517 5.1:+24596075 MS.gene86173:CDS
AGGGATATTGGAAGTTTATG+AGG 0.472958 5.1:+24593654 MS.gene86173:CDS
TGAGGGTGGGTGAGGCATGA+GGG 0.473573 5.1:-24593476 None:intergenic
CTCAACTGTGCGACAATAGT+GGG 0.478673 5.1:-24593572 None:intergenic
ACTGTCAAGGAGAGGCTTGT+GGG 0.478876 5.1:+24596157 MS.gene86173:CDS
AAGTTTCTTGTGATCGCCAC+TGG 0.479220 5.1:+24593679 MS.gene86173:CDS
ATTTCACCATTCGCATCCCT+TGG 0.479361 5.1:-24595291 None:intergenic
GAATTGGTATTTGGATAGGT+AGG 0.480246 5.1:-24593506 None:intergenic
GGTTATATTCCTAATGTGCC+TGG 0.488785 5.1:+24593715 MS.gene86173:CDS
GATAGGTAGGTTGGGCCTGA+GGG 0.490086 5.1:-24593493 None:intergenic
GAAGGAATTGGTATTTGGAT+AGG 0.493929 5.1:-24593510 None:intergenic
GGTAGGTTGGGCCTGAGGGT+GGG 0.501182 5.1:-24593489 None:intergenic
ATGATGAGGTTAGAAACAAA+TGG 0.503942 5.1:+24593605 MS.gene86173:CDS
TGGTATTTGGATAGGTAGGT+TGG 0.507880 5.1:-24593502 None:intergenic
AAAATGCTTACCCGAACCAT+TGG 0.508101 5.1:+24596105 MS.gene86173:CDS
CCTTCAAAGTTATTCAGTCC+AGG 0.511343 5.1:-24593733 None:intergenic
GATCATGGATTGTACTGTGC+AGG 0.519262 5.1:+24596134 MS.gene86173:CDS
AAGTCCGCAGTTATTGATGT+TGG 0.521748 5.1:+24595439 MS.gene86173:CDS
CCTGGACTGAATAACTTTGA+AGG 0.524426 5.1:+24593733 MS.gene86173:CDS
TTCAAAATATGAATCAAAAG+AGG 0.525909 5.1:+24593789 MS.gene86173:CDS
TGCTTATGATCTCCATAACT+CGG 0.526560 5.1:+24593849 MS.gene86173:CDS
ATGGTGATTTGTCCAAGTAC+GGG 0.532353 5.1:+24595368 MS.gene86173:CDS
GACTGTCAAGGAGAGGCTTG+TGG 0.533040 5.1:+24596156 MS.gene86173:CDS
ACAGTTGTAATTGTAGGTGC+TGG 0.535522 5.1:+24593304 MS.gene86173:CDS
GTAGTTGGGTGTGGTAACTC+AGG 0.547445 5.1:+24593817 MS.gene86173:CDS
GAGGGTGGGTGAGGCATGAG+GGG 0.557145 5.1:-24593475 None:intergenic
TCAATGCTAGTGATATATGA+AGG 0.561811 5.1:-24595754 None:intergenic
GCAGAAATTGCTAGGCCAGA+AGG 0.563796 5.1:-24593328 None:intergenic
TTAGGCAAGCAGAAATTGCT+AGG 0.575098 5.1:-24593336 None:intergenic
TGCTTACCCGAACCATTGGA+AGG 0.577260 5.1:+24596109 MS.gene86173:CDS
ATGAGGTTAGAAACAAATGG+AGG 0.583201 5.1:+24593608 MS.gene86173:CDS
CTGTCAAGGAGAGGCTTGTG+GGG 0.591890 5.1:+24596158 MS.gene86173:CDS
TGGGTGTGGTAACTCAGGAA+TGG 0.594724 5.1:+24593822 MS.gene86173:CDS
CTTACCCGAACCATTGGAAG+GGG 0.603003 5.1:+24596111 MS.gene86173:CDS
GCTTATGATCTCCATAACTC+GGG 0.611693 5.1:+24593850 MS.gene86173:CDS
AAACAAAGAACACTATAGAA+GGG 0.614313 5.1:+24593635 MS.gene86173:CDS
GCTTACCCGAACCATTGGAA+GGG 0.616793 5.1:+24596110 MS.gene86173:CDS
TGTACTGTGCAGGACTGTCA+AGG 0.617174 5.1:+24596144 MS.gene86173:CDS
AACTGTCGAAAAGATTAAGG+AGG 0.618608 5.1:+24595462 MS.gene86173:CDS
TGATCGTTTAAACCTCCACT+TGG 0.624802 5.1:+24593432 MS.gene86173:CDS
GTAGAGAAATGATTCACCAA+GGG 0.627830 5.1:+24595275 MS.gene86173:CDS
ACTGAATAACTTTGAAGGAG+AGG 0.632240 5.1:+24593738 MS.gene86173:CDS
ACTGTCGAAAAGATTAAGGA+GGG 0.634444 5.1:+24595463 MS.gene86173:CDS
GCCACTGGTGAAAATAGTGA+AGG 0.638559 5.1:+24593694 MS.gene86173:CDS
AGCAAAACTCACTAGCCAAG+TGG 0.645422 5.1:-24593447 None:intergenic
TGAGGTTAGAAACAAATGGA+GGG 0.645489 5.1:+24593609 MS.gene86173:CDS
GAATAACTTTGAAGGAGAGG+TGG 0.646286 5.1:+24593741 MS.gene86173:CDS
TGAGTCTGCTAAGTATGATG+AGG 0.653647 5.1:+24593591 MS.gene86173:CDS
GGATGCAGAGTCAATTGCTG+AGG 0.658304 5.1:+24596190 MS.gene86173:CDS
GACTTCGAACGACAATAGAT+GGG 0.661642 5.1:-24593879 None:intergenic
ACAAAAGCATAACTAATGGG+TGG 0.664351 5.1:+24595845 MS.gene86173:CDS
AGCACCTACAATTACAACTG+TGG 0.666119 5.1:-24593302 None:intergenic
GATTCACCAAGGGATGCGAA+TGG 0.671019 5.1:+24595285 MS.gene86173:CDS
AGTAGAGAAATGATTCACCA+AGG 0.673155 5.1:+24595274 MS.gene86173:CDS
AAAACTCACTAGCCAAGTGG+AGG 0.678012 5.1:-24593444 None:intergenic
TGTGCAGGACTGTCAAGGAG+AGG 0.680971 5.1:+24596149 MS.gene86173:CDS
TCAACTGTGCGACAATAGTG+GGG 0.708232 5.1:-24593571 None:intergenic
TTACCCGAACCATTGGAAGG+GGG 0.721390 5.1:+24596112 MS.gene86173:CDS
AGTTCCAACATCAATAACTG+CGG 0.739531 5.1:-24595443 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG - chr5.1:24594518-24594499 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr5.1:24594519-24594500 None:intergenic 0.0%
!! AATTAGTAAATTATCTATAA+AGG - chr5.1:24595565-24595584 None:intergenic 10.0%
!! AATTATGAAAATTAAAAGTT+TGG - chr5.1:24596223-24596242 None:intergenic 10.0%
!! CAATATAAAAATAATATGTA+TGG + chr5.1:24595179-24595198 MS.gene86173:intron 10.0%
!!! ATCAATATTATACAATATTT+TGG + chr5.1:24594249-24594268 MS.gene86173:intron 10.0%
!! ACATACATACATATATATAT+AGG + chr5.1:24594727-24594746 MS.gene86173:intron 15.0%
!! ATATATTCATCATAAAAACA+GGG + chr5.1:24595010-24595029 MS.gene86173:intron 15.0%
!! CATAATCATAATTAAGATAA+AGG + chr5.1:24595889-24595908 MS.gene86173:intron 15.0%
!! CATACATACATATATATATA+GGG + chr5.1:24594728-24594747 MS.gene86173:intron 15.0%
!! TATATATTCATCATAAAAAC+AGG + chr5.1:24595009-24595028 MS.gene86173:intron 15.0%
!! TATTAATAACTTGAAGAATT+AGG - chr5.1:24596019-24596038 None:intergenic 15.0%
!! TTATAATATGTTCAAAACTA+TGG + chr5.1:24595675-24595694 MS.gene86173:intron 15.0%
!!! AGTTTTTTTTTTAACAATGT+TGG + chr5.1:24595049-24595068 MS.gene86173:intron 15.0%
!! AATGTAAGTTGTATATTGTA+AGG - chr5.1:24595937-24595956 None:intergenic 20.0%
!! AATTTAAATTTGTATACCCA+AGG + chr5.1:24593960-24593979 MS.gene86173:intron 20.0%
!! ACAATTAAATTGTCTATGTA+TGG - chr5.1:24594000-24594019 None:intergenic 20.0%
!! ATATATTGAAAAAGAATTGC+TGG - chr5.1:24594173-24594192 None:intergenic 20.0%
!! ATGTAAGTTGTATATTGTAA+GGG - chr5.1:24595936-24595955 None:intergenic 20.0%
!! GAGTTAGAAATATTATTTAC+CGG - chr5.1:24593904-24593923 None:intergenic 20.0%
!! TTCAAAATATGAATCAAAAG+AGG + chr5.1:24593789-24593808 MS.gene86173:CDS 20.0%
!!! ATCTGAGATTGAATTATTAA+TGG + chr5.1:24594290-24594309 MS.gene86173:intron 20.0%
!!! GGAAGTAAGAATAAATTTTT+TGG + chr5.1:24594332-24594351 MS.gene86173:intron 20.0%
!!! TCTGAGATTGAATTATTAAT+GGG + chr5.1:24594291-24594310 MS.gene86173:intron 20.0%
!!! TTATTTGATGTATTTTTCGA+AGG + chr5.1:24596046-24596065 MS.gene86173:intron 20.0%
!!! TTGTGTGCTTTTTTTTTTAT+TGG + chr5.1:24595973-24595992 MS.gene86173:intron 20.0%
! AAACAAAGAACACTATAGAA+GGG + chr5.1:24593635-24593654 MS.gene86173:CDS 25.0%
! AAATATGCTCTTAATGAGAA+AGG + chr5.1:24596074-24596093 MS.gene86173:CDS 25.0%
! AATAACTTGAAGAATTAGGA+AGG - chr5.1:24596015-24596034 None:intergenic 25.0%
! AATATGCTCTTAATGAGAAA+GGG + chr5.1:24596075-24596094 MS.gene86173:CDS 25.0%
! ATAACTTGAAGAATTAGGAA+GGG - chr5.1:24596014-24596033 None:intergenic 25.0%
! CACTCTAAATATTACAAATC+TGG + chr5.1:24593766-24593785 MS.gene86173:CDS 25.0%
! CATATTTGTCTATGTATTGA+AGG - chr5.1:24593531-24593550 None:intergenic 25.0%
! CTGAGATTGAATTATTAATG+GGG + chr5.1:24594292-24594311 MS.gene86173:intron 25.0%
! GAGAAAAAGAAAGTTGTATT+TGG + chr5.1:24595775-24595794 MS.gene86173:CDS 25.0%
! GTAAGATTCTTCATTTGTAA+AGG - chr5.1:24595415-24595434 None:intergenic 25.0%
! TTACAAATGAAGAATCTTAC+AGG + chr5.1:24595415-24595434 MS.gene86173:CDS 25.0%
! TTATCGGCAAAACTAAAATA+TGG + chr5.1:24595349-24595368 MS.gene86173:CDS 25.0%
!! ATATGAATCAAAAGAGGTTT+TGG + chr5.1:24593795-24593814 MS.gene86173:CDS 25.0%
!! TAAAGACAATATGTGTTTTG+CGG + chr5.1:24595208-24595227 MS.gene86173:intron 25.0%
!!! TTTTTTTAGACCTATCTAGT+TGG + chr5.1:24594206-24594225 MS.gene86173:intron 25.0%
ACACCTTCATAAAAGTAAGT+TGG - chr5.1:24594824-24594843 None:intergenic 30.0%
ATGATGAGGTTAGAAACAAA+TGG + chr5.1:24593605-24593624 MS.gene86173:CDS 30.0%
ATGTCACACACTTACTTTAA+TGG - chr5.1:24595706-24595725 None:intergenic 30.0%
ATTTGTAAAGGTCCCAATTT+GGG - chr5.1:24595403-24595422 None:intergenic 30.0%
GAAACAAAGAACACTATAGA+AGG + chr5.1:24593634-24593653 MS.gene86173:CDS 30.0%
GGAGATTTATATGTATCCTT+GGG - chr5.1:24593979-24593998 None:intergenic 30.0%
GGATGCTATCATTACTTTAT+CGG + chr5.1:24595333-24595352 MS.gene86173:CDS 30.0%
GTATTGAAGGAATTGGTATT+TGG - chr5.1:24593518-24593537 None:intergenic 30.0%
TCAATGCTAGTGATATATGA+AGG - chr5.1:24595757-24595776 None:intergenic 30.0%
TGGAGATTTATATGTATCCT+TGG - chr5.1:24593980-24593999 None:intergenic 30.0%
TGTCTATGTATTGAAGGAAT+TGG - chr5.1:24593525-24593544 None:intergenic 30.0%
TGTGTGACATAACTTTGATT+TGG + chr5.1:24595716-24595735 MS.gene86173:intron 30.0%
TTATAGATGTCCAACTAGAT+AGG - chr5.1:24594219-24594238 None:intergenic 30.0%
! GCTACAAAAGCATAACTAAT+GGG + chr5.1:24595842-24595861 MS.gene86173:CDS 30.0%
!! ACACCAACTTACTTTTATGA+AGG + chr5.1:24594818-24594837 MS.gene86173:intron 30.0%
!! ATATTTTCCAGTTGCTATTG+TGG + chr5.1:24595312-24595331 MS.gene86173:CDS 30.0%
!!! ATATTTTGGTGTGTTAACCA+AGG + chr5.1:24594263-24594282 MS.gene86173:intron 30.0%
!!! GGGGCTAATTTTTTTTTTGA+AGG + chr5.1:24594311-24594330 MS.gene86173:intron 30.0%
!!! TATTTTGGTGTGTTAACCAA+GGG + chr5.1:24594264-24594283 MS.gene86173:intron 30.0%
AACTGTCGAAAAGATTAAGG+AGG + chr5.1:24595462-24595481 MS.gene86173:CDS 35.0%
ACTGTCGAAAAGATTAAGGA+GGG + chr5.1:24595463-24595482 MS.gene86173:CDS 35.0%
AGGGATATTGGAAGTTTATG+AGG + chr5.1:24593654-24593673 MS.gene86173:CDS 35.0%
AGTAGAGAAATGATTCACCA+AGG + chr5.1:24595274-24595293 MS.gene86173:CDS 35.0%
AGTTCCAACATCAATAACTG+CGG - chr5.1:24595446-24595465 None:intergenic 35.0%
ATATATGAAGGAACAACCTG+TGG - chr5.1:24595745-24595764 None:intergenic 35.0%
ATGAGGTTAGAAACAAATGG+AGG + chr5.1:24593608-24593627 MS.gene86173:CDS 35.0%
ATGATTGTTGTGCTTCTCTT+TGG + chr5.1:24593395-24593414 MS.gene86173:CDS 35.0%
ATTAATCATCTACACACACG+AGG - chr5.1:24595520-24595539 None:intergenic 35.0%
CATTTGTAAAGGTCCCAATT+TGG - chr5.1:24595404-24595423 None:intergenic 35.0%
CTAAAAGACACCTTCACAAA+AGG - chr5.1:24594769-24594788 None:intergenic 35.0%
GAACACTATAGAAGGGATAT+TGG + chr5.1:24593642-24593661 MS.gene86173:CDS 35.0%
GAAGGAATTGGTATTTGGAT+AGG - chr5.1:24593513-24593532 None:intergenic 35.0%
GAATCCACAGTTGTAATTGT+AGG + chr5.1:24593298-24593317 MS.gene86173:CDS 35.0%
GAATTGGTATTTGGATAGGT+AGG - chr5.1:24593509-24593528 None:intergenic 35.0%
GATTAAGGAGGGATCTATAA+AGG + chr5.1:24595474-24595493 MS.gene86173:CDS 35.0%
GTAGAGAAATGATTCACCAA+GGG + chr5.1:24595275-24595294 MS.gene86173:CDS 35.0%
TGAGGTTAGAAACAAATGGA+GGG + chr5.1:24593609-24593628 MS.gene86173:CDS 35.0%
TGCTTATGATCTCCATAACT+CGG + chr5.1:24593849-24593868 MS.gene86173:CDS 35.0%
TGGAACTGTCGAAAAGATTA+AGG + chr5.1:24595459-24595478 MS.gene86173:CDS 35.0%
! ACAAAAGCATAACTAATGGG+TGG + chr5.1:24595845-24595864 MS.gene86173:CDS 35.0%
! ACTGAATAACTTTGAAGGAG+AGG + chr5.1:24593738-24593757 MS.gene86173:CDS 35.0%
! GGCTACAAAAGCATAACTAA+TGG + chr5.1:24595841-24595860 MS.gene86173:CDS 35.0%
! TATGGTGATTTGTCCAAGTA+CGG + chr5.1:24595367-24595386 MS.gene86173:CDS 35.0%
!! AGTGGGGTTTTATGTTGAAA+TGG - chr5.1:24593558-24593577 None:intergenic 35.0%
!! CAAAAGAGGTTTTGGTAGTT+GGG + chr5.1:24593803-24593822 MS.gene86173:CDS 35.0%
!! TCAAAAGAGGTTTTGGTAGT+TGG + chr5.1:24593802-24593821 MS.gene86173:CDS 35.0%
AAAATGCTTACCCGAACCAT+TGG + chr5.1:24596105-24596124 MS.gene86173:CDS 40.0%
AAAGTGCAAATCACACCTTG+AGG + chr5.1:24594866-24594885 MS.gene86173:intron 40.0%
AAGTCCGCAGTTATTGATGT+TGG + chr5.1:24595439-24595458 MS.gene86173:CDS 40.0%
ACAGTTGTAATTGTAGGTGC+TGG + chr5.1:24593304-24593323 MS.gene86173:CDS 40.0%
AGCACCTACAATTACAACTG+TGG - chr5.1:24593305-24593324 None:intergenic 40.0%
ATAGCATCCACAATAGCAAC+TGG - chr5.1:24595322-24595341 None:intergenic 40.0%
ATCTATTGTCGTTCGAAGTC+CGG + chr5.1:24593882-24593901 MS.gene86173:CDS 40.0%
ATTGTTGTGCTTCTCTTTGG+AGG + chr5.1:24593398-24593417 MS.gene86173:CDS 40.0%
CCTGGACTGAATAACTTTGA+AGG + chr5.1:24593733-24593752 MS.gene86173:CDS 40.0%
CCTTCAAAGTTATTCAGTCC+AGG - chr5.1:24593736-24593755 None:intergenic 40.0%
GACTTCGAACGACAATAGAT+GGG - chr5.1:24593882-24593901 None:intergenic 40.0%
GCTTATGATCTCCATAACTC+GGG + chr5.1:24593850-24593869 MS.gene86173:CDS 40.0%
GGGATTTATCGTCCCAAATT+GGG + chr5.1:24595388-24595407 MS.gene86173:CDS 40.0%
GGTATTTGGATAGGTAGGTT+GGG - chr5.1:24593504-24593523 None:intergenic 40.0%
GGTTATATTCCTAATGTGCC+TGG + chr5.1:24593715-24593734 MS.gene86173:CDS 40.0%
TGAGTCTGCTAAGTATGATG+AGG + chr5.1:24593591-24593610 MS.gene86173:CDS 40.0%
TGATCGTTTAAACCTCCACT+TGG + chr5.1:24593432-24593451 MS.gene86173:CDS 40.0%
TGCTAAAAGACACCACCAAA+GGG + chr5.1:24594896-24594915 MS.gene86173:intron 40.0%
TGGTATTTGGATAGGTAGGT+TGG - chr5.1:24593505-24593524 None:intergenic 40.0%
TTAGGCAAGCAGAAATTGCT+AGG - chr5.1:24593339-24593358 None:intergenic 40.0%
TTATTCAGTCCAGGCACATT+AGG - chr5.1:24593727-24593746 None:intergenic 40.0%
TTGCTAAAAGACACCACCAA+AGG + chr5.1:24594895-24594914 MS.gene86173:intron 40.0%
! ACCTTCACTATTTTCACCAG+TGG - chr5.1:24593698-24593717 None:intergenic 40.0%
! ATGGTGATTTGTCCAAGTAC+GGG + chr5.1:24595368-24595387 MS.gene86173:CDS 40.0%
! CATAACTAATGGGTGGCTTA+AGG + chr5.1:24595852-24595871 MS.gene86173:CDS 40.0%
! CTAGAAGACACCTTTTGTGA+AGG + chr5.1:24594756-24594775 MS.gene86173:intron 40.0%
! GAATAACTTTGAAGGAGAGG+TGG + chr5.1:24593741-24593760 MS.gene86173:CDS 40.0%
! TTTTAGCAAGTCACACCTCA+AGG - chr5.1:24594884-24594903 None:intergenic 40.0%
!! AACTTTGATTTGGATGCCAC+AGG + chr5.1:24595726-24595745 MS.gene86173:intron 40.0%
!! GAGAGATGCAGTTTTGTGTT+AGG - chr5.1:24593357-24593376 None:intergenic 40.0%
!!! TGGTTCGGGTAAGCATTTTT+TGG - chr5.1:24596104-24596123 None:intergenic 40.0%
AAAACTCACTAGCCAAGTGG+AGG - chr5.1:24593447-24593466 None:intergenic 45.0%
AAGTTTCTTGTGATCGCCAC+TGG + chr5.1:24593679-24593698 MS.gene86173:CDS 45.0%
ACTCAACTGTGCGACAATAG+TGG - chr5.1:24593576-24593595 None:intergenic 45.0%
AGCAAAACTCACTAGCCAAG+TGG - chr5.1:24593450-24593469 None:intergenic 45.0%
ATTTCACCATTCGCATCCCT+TGG - chr5.1:24595294-24595313 None:intergenic 45.0%
CGGGATTTATCGTCCCAAAT+TGG + chr5.1:24595387-24595406 MS.gene86173:CDS 45.0%
CTCAACTGTGCGACAATAGT+GGG - chr5.1:24593575-24593594 None:intergenic 45.0%
GCCACTGGTGAAAATAGTGA+AGG + chr5.1:24593694-24593713 MS.gene86173:CDS 45.0%
GGACTTCGAACGACAATAGA+TGG - chr5.1:24593883-24593902 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG + chr5.1:24594899-24594918 MS.gene86173:intron 45.0%
TCAACTGTGCGACAATAGTG+GGG - chr5.1:24593574-24593593 None:intergenic 45.0%
! GATCATGGATTGTACTGTGC+AGG + chr5.1:24596134-24596153 MS.gene86173:CDS 45.0%
! TTTGGTGTGTTAACCAAGGG+CGG + chr5.1:24594267-24594286 MS.gene86173:intron 45.0%
!! TATTCAAAAAATAATAATAA+TGG - chr5.1:24595090-24595109 None:intergenic 5.0%
AACCATTGGAAGGGGGATCA+TGG + chr5.1:24596119-24596138 MS.gene86173:CDS 50.0%
ACTGTCAAGGAGAGGCTTGT+GGG + chr5.1:24596157-24596176 MS.gene86173:CDS 50.0%
AGGCTTGTGGGGAGTCAAAA+TGG + chr5.1:24596169-24596188 MS.gene86173:CDS 50.0%
ATCCATGATCCCCCTTCCAA+TGG - chr5.1:24596124-24596143 None:intergenic 50.0%
CTTACCCGAACCATTGGAAG+GGG + chr5.1:24596111-24596130 MS.gene86173:CDS 50.0%
GATTCACCAAGGGATGCGAA+TGG + chr5.1:24595285-24595304 MS.gene86173:CDS 50.0%
GCAGAAATTGCTAGGCCAGA+AGG - chr5.1:24593331-24593350 None:intergenic 50.0%
GCTTACCCGAACCATTGGAA+GGG + chr5.1:24596110-24596129 MS.gene86173:CDS 50.0%
GGATGCAGAGTCAATTGCTG+AGG + chr5.1:24596190-24596209 MS.gene86173:CDS 50.0%
GGGACGATAAATCCCGTACT+TGG - chr5.1:24595383-24595402 None:intergenic 50.0%
GTAGTTGGGTGTGGTAACTC+AGG + chr5.1:24593817-24593836 MS.gene86173:CDS 50.0%
TCTTGCTACAAGCCACCCTT+TGG - chr5.1:24594914-24594933 None:intergenic 50.0%
TGATCCCCCTTCCAATGGTT+CGG - chr5.1:24596119-24596138 None:intergenic 50.0%
TGCTTACCCGAACCATTGGA+AGG + chr5.1:24596109-24596128 MS.gene86173:CDS 50.0%
TGGGTGTGGTAACTCAGGAA+TGG + chr5.1:24593822-24593841 MS.gene86173:CDS 50.0%
TGTACTGTGCAGGACTGTCA+AGG + chr5.1:24596144-24596163 MS.gene86173:CDS 50.0%
TTACCCGAACCATTGGAAGG+GGG + chr5.1:24596112-24596131 MS.gene86173:CDS 50.0%
TTCAATCTCAGATCCGCCCT+TGG - chr5.1:24594283-24594302 None:intergenic 50.0%
! GATGCGATCGTTTTCGCAAC+TGG + chr5.1:24595820-24595839 MS.gene86173:CDS 50.0%
!! ATGGGTTAGCACCCGAGTTA+TGG - chr5.1:24593864-24593883 None:intergenic 50.0%
!! ATTGTAGGTGCTGGTCCTTC+TGG + chr5.1:24593313-24593332 MS.gene86173:CDS 50.0%
!! GAGGTTTTGGTAGTTGGGTG+TGG + chr5.1:24593808-24593827 MS.gene86173:CDS 50.0%
CTGTCAAGGAGAGGCTTGTG+GGG + chr5.1:24596158-24596177 MS.gene86173:CDS 55.0%
GACTGTCAAGGAGAGGCTTG+TGG + chr5.1:24596156-24596175 MS.gene86173:CDS 55.0%
GATCCCCCTTCCAATGGTTC+GGG - chr5.1:24596118-24596137 None:intergenic 55.0%
TGCTACAAGCCACCCTTTGG+TGG - chr5.1:24594911-24594930 None:intergenic 55.0%
TGTGCAGGACTGTCAAGGAG+AGG + chr5.1:24596149-24596168 MS.gene86173:CDS 55.0%
! GATAGGTAGGTTGGGCCTGA+GGG - chr5.1:24593496-24593515 None:intergenic 55.0%
TGAGGGTGGGTGAGGCATGA+GGG - chr5.1:24593479-24593498 None:intergenic 60.0%
! GGATAGGTAGGTTGGGCCTG+AGG - chr5.1:24593497-24593516 None:intergenic 60.0%
CTCATGCCTCACCCACCCTC+AGG + chr5.1:24593478-24593497 MS.gene86173:CDS 65.0%
CTGAGGGTGGGTGAGGCATG+AGG - chr5.1:24593480-24593499 None:intergenic 65.0%
GAGGGTGGGTGAGGCATGAG+GGG - chr5.1:24593478-24593497 None:intergenic 65.0%
! AGGTAGGTTGGGCCTGAGGG+TGG - chr5.1:24593493-24593512 None:intergenic 65.0%
! GGTAGGTTGGGCCTGAGGGT+GGG - chr5.1:24593492-24593511 None:intergenic 65.0%
GTTGGGCCTGAGGGTGGGTG+AGG - chr5.1:24593487-24593506 None:intergenic 70.0%
! TGCGCGCGCGCGCGCGTGTG+TGG - chr5.1:24594460-24594479 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 24593292 24596244 24593292 ID=MS.gene86173
chr5.1 mRNA 24593292 24596244 24593292 ID=MS.gene86173.t1;Parent=MS.gene86173
chr5.1 exon 24593292 24593903 24593292 ID=MS.gene86173.t1.exon1;Parent=MS.gene86173.t1
chr5.1 CDS 24593292 24593903 24593292 ID=cds.MS.gene86173.t1;Parent=MS.gene86173.t1
chr5.1 exon 24595262 24595495 24595262 ID=MS.gene86173.t1.exon2;Parent=MS.gene86173.t1
chr5.1 CDS 24595262 24595495 24595262 ID=cds.MS.gene86173.t1;Parent=MS.gene86173.t1
chr5.1 exon 24595748 24595873 24595748 ID=MS.gene86173.t1.exon3;Parent=MS.gene86173.t1
chr5.1 CDS 24595748 24595873 24595748 ID=cds.MS.gene86173.t1;Parent=MS.gene86173.t1
chr5.1 exon 24596068 24596244 24596068 ID=MS.gene86173.t1.exon4;Parent=MS.gene86173.t1
chr5.1 CDS 24596068 24596244 24596068 ID=cds.MS.gene86173.t1;Parent=MS.gene86173.t1
Gene Sequence

>MS.gene86173

ATGCAAGAATCCACAGTTGTAATTGTAGGTGCTGGTCCTTCTGGCCTAGCAATTTCTGCTTGCCTAACACAAAACTGCATCTCTCATATCATGCTCGAAAAAGATGATTGTTGTGCTTCTCTTTGGAGGAAAAATGCGTATGATCGTTTAAACCTCCACTTGGCTAGTGAGTTTTGCTCTTTACCCCTCATGCCTCACCCACCCTCAGGCCCAACCTACCTATCCAAATACCAATTCCTTCAATACATAGACAAATATGTCGACCATTTCAACATAAAACCCCACTATTGTCGCACAGTTGAGTCTGCTAAGTATGATGAGGTTAGAAACAAATGGAGGGTTGAAACAAAGAACACTATAGAAGGGATATTGGAAGTTTATGAGGCGAAGTTTCTTGTGATCGCCACTGGTGAAAATAGTGAAGGTTATATTCCTAATGTGCCTGGACTGAATAACTTTGAAGGAGAGGTGGTACACTCTAAATATTACAAATCTGGTTCAAAATATGAATCAAAAGAGGTTTTGGTAGTTGGGTGTGGTAACTCAGGAATGGAGATTGCTTATGATCTCCATAACTCGGGTGCTAACCCATCTATTGTCGTTCGAAGTCCGGTAAATAATATTTCTAACTCACTCTTTTCATGCAACAATATCATTTAGAATGAAAGAATTTAAATTTGTATACCCAAGGATACATATAAATCTCCATACATAGACAATTTAATTGTTTTTGAGAGAACATAGACAATTTATTTATTTATTTATTTAAAAATTTAATGACAGATTAATTTTATGAAATTCTCGATAAGATTTTTTTTAATCTAGCAATGTATGTATAATTTCTTGATTCAATGTGTCGATAATTCATTAATATAATTCCAGCAATTCTTTTTCAATATATTTTTTTGTTGAGATTTTTTTAGACCTATCTAGTTGGACATCTATAACTTTCGACATATCAATATTATACAATATTTTGGTGTGTTAACCAAGGGCGGATCTGAGATTGAATTATTAATGGGGCTAATTTTTTTTTTGAAGGAAGTAAGAATAAATTTTTTGGAGAAATAAATATTAATAGATAATGCTCAACATATGTTACAAAATCTTATCTTAGAACTCGTGCGTGTGCACGCGTACACATTCAAGCACACGCACGCGCGCGCCACACACGCGCGCGCGCGCGCACACACACACACACACACACATATATATATATATATATATATGTATATATATATATGTATATATATATATATATATGTGTGTGTGTGTGTGTATGTATGTATGTATATACATACATACATACACACACACACACACACACACACACACACACACATATATATATATATATATACATATATATATATATATATATATATATATATATATATATATATACACACACACACACACACATACATACATACAGACATACATACATATATATATAGGGTTTTGCTAGAAGACACCTTTTGTGAAGGTGTCTTTTAGCAAGTTACTCTATGAGCATTTGCGAAAAGACACCAACTTACTTTTATGAAGGTGTCTTTTAGCAAAGTTATAACTAAAAAGTGCAAATCACACCTTGAGGTGTGACTTGCTAAAAGACACCACCAAAGGGTGGCTTGTAGCAAGACCCATATATATATATATATATATATATATATATATATTATATATATATATATATATATATATATATATATATATATATATATTCATCATAAAAACAGGGATTCAGTTGACTCGATAGTTTTTTTTTTAACAATGTTGGCTCGATAGTTGAACTCCATTATTATTATTTTTTGAATAAAGTTGAACTACATTCTGTTGATATTATTTTTCTTTAAAAATAAATTATGTTTTTATTATTTGTCAAATCAATATAAAAATAATATGTATGGATAGTGTAAAGACAATATGTGTTTTGCGGTATTAATTGTTTAATTTTTTTTTTTTTTTAGTTTCATGTCTTCAGTAGAGAAATGATTCACCAAGGGATGCGAATGGTGAAATATTTTCCAGTTGCTATTGTGGATGCTATCATTACTTTATCGGCAAAACTAAAATATGGTGATTTGTCCAAGTACGGGATTTATCGTCCCAAATTGGGACCTTTACAAATGAAGAATCTTACAGGAAAGTCCGCAGTTATTGATGTTGGAACTGTCGAAAAGATTAAGGAGGGATCTATAAAGGTACTTGATTAGTTATTAATACCTCGTGTGTGTAGATGATTAATTAACAAAAGCTTAATGATTCTTCCTTTATAGATAATTTACTAATTTTGTATAAAATGCAATACTTCTTTTTATCAACACAACTATGAAGTTACTTCATGATATTTATTATTTGTGAAATTTTTATTAAAATTAAATTATAATATGTTCAAAACTATGGCACTTCCATTAAAGTAAGTGTGTGACATAACTTTGATTTGGATGCCACAGGTTGTTCCTTCATATATCACTAGCATTGAGAAAAAGAAAGTTGTATTTGGAAACAACATCAAAAAAGAGTTCGATGCGATCGTTTTCGCAACTGGCTACAAAAGCATAACTAATGGGTGGCTTAAGGTATATGTCATAAATCATAATCATAATTAAGATAAAGGAAGAAAAATTGATGATCTTCTCCCTTACAATATACAACTTACATTTCATATTTTAACACTTTTGTGTGCTTTTTTTTTTATTGGACTTTATTTCTCATACCCTTCCTAATTCTTCAAGTTATTAATATATTATATTATTTGATGTATTTTTCGAAGGATTACAAATATGCTCTTAATGAGAAAGGGATGCCAAAAAATGCTTACCCGAACCATTGGAAGGGGGATCATGGATTGTACTGTGCAGGACTGTCAAGGAGAGGCTTGTGGGGAGTCAAAATGGATGCAGAGTCAATTGCTGAGGACATCAACCAAACTTTTAATTTTCATAATTAA

Protein sequence

>MS.gene86173.t1

MQESTVVIVGAGPSGLAISACLTQNCISHIMLEKDDCCASLWRKNAYDRLNLHLASEFCSLPLMPHPPSGPTYLSKYQFLQYIDKYVDHFNIKPHYCRTVESAKYDEVRNKWRVETKNTIEGILEVYEAKFLVIATGENSEGYIPNVPGLNNFEGEVVHSKYYKSGSKYESKEVLVVGCGNSGMEIAYDLHNSGANPSIVVRSPFHVFSREMIHQGMRMVKYFPVAIVDAIITLSAKLKYGDLSKYGIYRPKLGPLQMKNLTGKSAVIDVGTVEKIKEGSIKVVPSYITSIEKKKVVFGNNIKKEFDAIVFATGYKSITNGWLKDYKYALNEKGMPKNAYPNHWKGDHGLYCAGLSRRGLWGVKMDAESIAEDINQTFNFHN