Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86173.t1 | XP_003613143.1 | 91.6 | 382 | 32 | 0 | 1 | 382 | 1 | 382 | 4.20E-205 | 723.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86173.t1 | Q9FVQ0 | 56.7 | 372 | 161 | 0 | 3 | 374 | 2 | 373 | 2.2e-122 | 440.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86173.t1 | G7JYZ1 | 91.6 | 382 | 32 | 0 | 1 | 382 | 1 | 382 | 3.0e-205 | 723.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene86173 | MS.gene059136 | PPI |
MS.gene86173 | MS.gene038029 | PPI |
MS.gene86173 | MS.gene021474 | PPI |
MS.gene031178 | MS.gene86173 | PPI |
MS.gene86173 | MS.gene014685 | PPI |
MS.gene64265 | MS.gene86173 | PPI |
MS.gene86173 | MS.gene40340 | PPI |
MS.gene56048 | MS.gene86173 | PPI |
MS.gene09884 | MS.gene86173 | PPI |
MS.gene86173 | MS.gene60245 | PPI |
MS.gene86173 | MS.gene53594 | PPI |
MS.gene86173 | MS.gene061851 | PPI |
MS.gene059027 | MS.gene86173 | PPI |
MS.gene51580 | MS.gene86173 | PPI |
MS.gene61665 | MS.gene86173 | PPI |
MS.gene24021 | MS.gene86173 | PPI |
MS.gene018590 | MS.gene86173 | PPI |
MS.gene23537 | MS.gene86173 | PPI |
MS.gene31616 | MS.gene86173 | PPI |
MS.gene86173 | MS.gene064951 | PPI |
MS.gene015953 | MS.gene86173 | PPI |
MS.gene94810 | MS.gene86173 | PPI |
MS.gene86173 | MS.gene32792 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86173.t1 | MTR_5g033260 | 91.623 | 382 | 32 | 0 | 1 | 382 | 1 | 382 | 0.0 | 730 |
MS.gene86173.t1 | MTR_8g432640 | 84.031 | 382 | 61 | 0 | 1 | 382 | 1 | 382 | 0.0 | 674 |
MS.gene86173.t1 | MTR_3g088925 | 52.116 | 378 | 179 | 2 | 3 | 379 | 4 | 380 | 2.07e-140 | 405 |
MS.gene86173.t1 | MTR_3g088945 | 51.587 | 378 | 181 | 2 | 3 | 379 | 4 | 380 | 4.40e-139 | 402 |
MS.gene86173.t1 | MTR_7g107690 | 49.866 | 373 | 187 | 0 | 2 | 374 | 4 | 376 | 1.99e-138 | 400 |
MS.gene86173.t1 | MTR_3g088955 | 51.323 | 378 | 182 | 2 | 3 | 379 | 4 | 380 | 3.16e-138 | 400 |
MS.gene86173.t1 | MTR_7g107710 | 50.667 | 375 | 183 | 2 | 1 | 374 | 1 | 374 | 3.81e-135 | 391 |
MS.gene86173.t1 | MTR_4g051642 | 51.587 | 378 | 180 | 3 | 3 | 379 | 4 | 379 | 2.21e-134 | 390 |
MS.gene86173.t1 | MTR_3g109520 | 46.113 | 373 | 195 | 2 | 7 | 374 | 40 | 411 | 5.49e-122 | 359 |
MS.gene86173.t1 | MTR_1g069275 | 47.507 | 381 | 184 | 6 | 7 | 378 | 26 | 399 | 3.99e-119 | 352 |
MS.gene86173.t1 | MTR_7g099330 | 46.419 | 377 | 190 | 4 | 7 | 378 | 25 | 394 | 2.06e-118 | 350 |
MS.gene86173.t1 | MTR_1g008380 | 44.297 | 377 | 203 | 3 | 7 | 378 | 43 | 417 | 5.10e-118 | 349 |
MS.gene86173.t1 | MTR_6g086870 | 45.669 | 381 | 196 | 4 | 7 | 378 | 21 | 399 | 5.10e-118 | 348 |
MS.gene86173.t1 | MTR_1g046230 | 45.573 | 384 | 198 | 6 | 7 | 382 | 25 | 405 | 3.55e-117 | 347 |
MS.gene86173.t1 | MTR_1g011630 | 44.562 | 377 | 198 | 5 | 7 | 378 | 17 | 387 | 2.02e-115 | 342 |
MS.gene86173.t1 | MTR_3g096030 | 74.725 | 182 | 22 | 1 | 1 | 182 | 1 | 158 | 1.99e-91 | 271 |
MS.gene86173.t1 | MTR_7g099160 | 44.118 | 306 | 159 | 4 | 78 | 378 | 217 | 515 | 2.84e-83 | 263 |
MS.gene86173.t1 | MTR_3g096020 | 52.212 | 113 | 16 | 3 | 212 | 323 | 1 | 76 | 6.93e-23 | 100 |
MS.gene86173.t1 | MTR_2g450310 | 24.538 | 379 | 215 | 13 | 3 | 316 | 2 | 374 | 1.94e-14 | 75.1 |
MS.gene86173.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 7.53e-13 | 68.6 |
MS.gene86173.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 1.18e-12 | 68.6 |
MS.gene86173.t1 | MTR_8g037910 | 25.359 | 209 | 130 | 4 | 6 | 190 | 4 | 210 | 1.97e-12 | 68.6 |
MS.gene86173.t1 | MTR_8g037880 | 23.874 | 222 | 142 | 5 | 6 | 202 | 4 | 223 | 3.08e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86173.t1 | AT1G48910 | 56.720 | 372 | 161 | 0 | 3 | 374 | 2 | 373 | 7.86e-157 | 446 |
MS.gene86173.t1 | AT1G21430 | 51.206 | 373 | 177 | 4 | 6 | 376 | 9 | 378 | 4.81e-133 | 386 |
MS.gene86173.t1 | AT1G04610 | 47.606 | 376 | 187 | 5 | 7 | 374 | 38 | 411 | 2.91e-123 | 363 |
MS.gene86173.t1 | AT5G11320 | 46.154 | 377 | 190 | 4 | 7 | 378 | 18 | 386 | 1.64e-120 | 355 |
MS.gene86173.t1 | AT5G25620 | 46.053 | 380 | 195 | 5 | 7 | 379 | 33 | 409 | 1.11e-119 | 353 |
MS.gene86173.t1 | AT5G25620 | 46.438 | 379 | 193 | 5 | 7 | 378 | 33 | 408 | 2.00e-119 | 353 |
MS.gene86173.t1 | AT1G04180 | 45.383 | 379 | 197 | 5 | 7 | 379 | 26 | 400 | 4.72e-118 | 349 |
MS.gene86173.t1 | AT5G43890 | 45.526 | 380 | 198 | 5 | 7 | 379 | 26 | 403 | 4.81e-118 | 349 |
MS.gene86173.t1 | AT4G28720 | 44.531 | 384 | 203 | 6 | 7 | 382 | 26 | 407 | 3.67e-116 | 345 |
MS.gene86173.t1 | AT4G13260 | 44.855 | 379 | 203 | 2 | 7 | 380 | 29 | 406 | 6.23e-115 | 341 |
MS.gene86173.t1 | AT4G32540 | 44.180 | 378 | 198 | 5 | 7 | 378 | 22 | 392 | 2.59e-114 | 339 |
MS.gene86173.t1 | AT4G32540 | 44.327 | 379 | 198 | 5 | 7 | 378 | 22 | 394 | 3.11e-114 | 339 |
MS.gene86173.t1 | AT2G33230 | 44.474 | 380 | 200 | 5 | 7 | 378 | 33 | 409 | 4.81e-111 | 332 |
MS.gene86173.t1 | AT5G11320 | 46.130 | 323 | 162 | 3 | 7 | 324 | 18 | 333 | 3.89e-101 | 304 |
MS.gene86173.t1 | AT4G13260 | 47.163 | 282 | 144 | 1 | 7 | 283 | 29 | 310 | 7.05e-91 | 276 |
MS.gene86173.t1 | AT4G13260 | 41.554 | 296 | 167 | 2 | 90 | 380 | 9 | 303 | 2.80e-74 | 233 |
MS.gene86173.t1 | AT1G62560 | 25.581 | 215 | 127 | 6 | 6 | 190 | 13 | 224 | 1.97e-13 | 71.6 |
MS.gene86173.t1 | AT1G62560 | 25.000 | 228 | 138 | 6 | 6 | 203 | 13 | 237 | 2.92e-13 | 71.2 |
MS.gene86173.t1 | AT1G19250 | 23.298 | 382 | 217 | 17 | 1 | 315 | 8 | 380 | 5.61e-12 | 67.4 |
MS.gene86173.t1 | AT1G65860 | 22.566 | 226 | 145 | 6 | 6 | 203 | 13 | 236 | 7.68e-11 | 63.9 |
MS.gene86173.t1 | AT1G12140 | 25.281 | 178 | 120 | 5 | 36 | 203 | 63 | 237 | 9.44e-11 | 63.5 |
MS.gene86173.t1 | AT1G12140 | 25.281 | 178 | 120 | 5 | 36 | 203 | 63 | 237 | 9.44e-11 | 63.5 |
Find 100 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGGATTTATCGTCCCAAAT+TGG | 0.218572 | 5.1:+24595387 | MS.gene86173:CDS |
GTATTGAAGGAATTGGTATT+TGG | 0.229329 | 5.1:-24593515 | None:intergenic |
CATTTGTAAAGGTCCCAATT+TGG | 0.241094 | 5.1:-24595401 | None:intergenic |
AATTATGAAAATTAAAAGTT+TGG | 0.248270 | 5.1:-24596220 | None:intergenic |
ATTGTAGGTGCTGGTCCTTC+TGG | 0.274701 | 5.1:+24593313 | MS.gene86173:CDS |
GGATGCTATCATTACTTTAT+CGG | 0.293233 | 5.1:+24595333 | MS.gene86173:CDS |
AGGTAGGTTGGGCCTGAGGG+TGG | 0.310193 | 5.1:-24593490 | None:intergenic |
TTACAAATGAAGAATCTTAC+AGG | 0.315816 | 5.1:+24595415 | MS.gene86173:CDS |
ATGATTGTTGTGCTTCTCTT+TGG | 0.323198 | 5.1:+24593395 | MS.gene86173:CDS |
ATATGAATCAAAAGAGGTTT+TGG | 0.328118 | 5.1:+24593795 | MS.gene86173:CDS |
CTGAGGGTGGGTGAGGCATG+AGG | 0.329207 | 5.1:-24593477 | None:intergenic |
GGACTTCGAACGACAATAGA+TGG | 0.338818 | 5.1:-24593880 | None:intergenic |
TTATCGGCAAAACTAAAATA+TGG | 0.345197 | 5.1:+24595349 | MS.gene86173:CDS |
GAACACTATAGAAGGGATAT+TGG | 0.347771 | 5.1:+24593642 | MS.gene86173:CDS |
ATTTGTAAAGGTCCCAATTT+GGG | 0.347806 | 5.1:-24595400 | None:intergenic |
AGGCTTGTGGGGAGTCAAAA+TGG | 0.349213 | 5.1:+24596169 | MS.gene86173:CDS |
TGTCTATGTATTGAAGGAAT+TGG | 0.353488 | 5.1:-24593522 | None:intergenic |
TGGAACTGTCGAAAAGATTA+AGG | 0.360924 | 5.1:+24595459 | MS.gene86173:CDS |
GGCTACAAAAGCATAACTAA+TGG | 0.367252 | 5.1:+24595841 | MS.gene86173:CDS |
GAAACAAAGAACACTATAGA+AGG | 0.371049 | 5.1:+24593634 | MS.gene86173:CDS |
CACTCTAAATATTACAAATC+TGG | 0.373703 | 5.1:+24593766 | MS.gene86173:CDS |
TTATTCAGTCCAGGCACATT+AGG | 0.380732 | 5.1:-24593724 | None:intergenic |
GTTGGGCCTGAGGGTGGGTG+AGG | 0.384881 | 5.1:-24593484 | None:intergenic |
ATCTATTGTCGTTCGAAGTC+CGG | 0.385488 | 5.1:+24593882 | MS.gene86173:CDS |
GATTAAGGAGGGATCTATAA+AGG | 0.408201 | 5.1:+24595474 | MS.gene86173:CDS |
GGGATTTATCGTCCCAAATT+GGG | 0.412423 | 5.1:+24595388 | MS.gene86173:CDS |
CATATTTGTCTATGTATTGA+AGG | 0.420134 | 5.1:-24593528 | None:intergenic |
CATAACTAATGGGTGGCTTA+AGG | 0.420449 | 5.1:+24595852 | MS.gene86173:CDS |
GAATCCACAGTTGTAATTGT+AGG | 0.425297 | 5.1:+24593298 | MS.gene86173:CDS |
GGGACGATAAATCCCGTACT+TGG | 0.427951 | 5.1:-24595380 | None:intergenic |
ATGGGTTAGCACCCGAGTTA+TGG | 0.434610 | 5.1:-24593861 | None:intergenic |
ACTCAACTGTGCGACAATAG+TGG | 0.435776 | 5.1:-24593573 | None:intergenic |
CTCATGCCTCACCCACCCTC+AGG | 0.443220 | 5.1:+24593478 | MS.gene86173:CDS |
ATTGTTGTGCTTCTCTTTGG+AGG | 0.448516 | 5.1:+24593398 | MS.gene86173:CDS |
AAATATGCTCTTAATGAGAA+AGG | 0.450742 | 5.1:+24596074 | MS.gene86173:CDS |
GTAAGATTCTTCATTTGTAA+AGG | 0.451233 | 5.1:-24595412 | None:intergenic |
ATAGCATCCACAATAGCAAC+TGG | 0.454424 | 5.1:-24595319 | None:intergenic |
GCTACAAAAGCATAACTAAT+GGG | 0.458461 | 5.1:+24595842 | MS.gene86173:CDS |
GGTATTTGGATAGGTAGGTT+GGG | 0.467624 | 5.1:-24593501 | None:intergenic |
TATGGTGATTTGTCCAAGTA+CGG | 0.467911 | 5.1:+24595367 | MS.gene86173:CDS |
GGATAGGTAGGTTGGGCCTG+AGG | 0.468970 | 5.1:-24593494 | None:intergenic |
AATATGCTCTTAATGAGAAA+GGG | 0.471517 | 5.1:+24596075 | MS.gene86173:CDS |
AGGGATATTGGAAGTTTATG+AGG | 0.472958 | 5.1:+24593654 | MS.gene86173:CDS |
TGAGGGTGGGTGAGGCATGA+GGG | 0.473573 | 5.1:-24593476 | None:intergenic |
CTCAACTGTGCGACAATAGT+GGG | 0.478673 | 5.1:-24593572 | None:intergenic |
ACTGTCAAGGAGAGGCTTGT+GGG | 0.478876 | 5.1:+24596157 | MS.gene86173:CDS |
AAGTTTCTTGTGATCGCCAC+TGG | 0.479220 | 5.1:+24593679 | MS.gene86173:CDS |
ATTTCACCATTCGCATCCCT+TGG | 0.479361 | 5.1:-24595291 | None:intergenic |
GAATTGGTATTTGGATAGGT+AGG | 0.480246 | 5.1:-24593506 | None:intergenic |
GGTTATATTCCTAATGTGCC+TGG | 0.488785 | 5.1:+24593715 | MS.gene86173:CDS |
GATAGGTAGGTTGGGCCTGA+GGG | 0.490086 | 5.1:-24593493 | None:intergenic |
GAAGGAATTGGTATTTGGAT+AGG | 0.493929 | 5.1:-24593510 | None:intergenic |
GGTAGGTTGGGCCTGAGGGT+GGG | 0.501182 | 5.1:-24593489 | None:intergenic |
ATGATGAGGTTAGAAACAAA+TGG | 0.503942 | 5.1:+24593605 | MS.gene86173:CDS |
TGGTATTTGGATAGGTAGGT+TGG | 0.507880 | 5.1:-24593502 | None:intergenic |
AAAATGCTTACCCGAACCAT+TGG | 0.508101 | 5.1:+24596105 | MS.gene86173:CDS |
CCTTCAAAGTTATTCAGTCC+AGG | 0.511343 | 5.1:-24593733 | None:intergenic |
GATCATGGATTGTACTGTGC+AGG | 0.519262 | 5.1:+24596134 | MS.gene86173:CDS |
AAGTCCGCAGTTATTGATGT+TGG | 0.521748 | 5.1:+24595439 | MS.gene86173:CDS |
CCTGGACTGAATAACTTTGA+AGG | 0.524426 | 5.1:+24593733 | MS.gene86173:CDS |
TTCAAAATATGAATCAAAAG+AGG | 0.525909 | 5.1:+24593789 | MS.gene86173:CDS |
TGCTTATGATCTCCATAACT+CGG | 0.526560 | 5.1:+24593849 | MS.gene86173:CDS |
ATGGTGATTTGTCCAAGTAC+GGG | 0.532353 | 5.1:+24595368 | MS.gene86173:CDS |
GACTGTCAAGGAGAGGCTTG+TGG | 0.533040 | 5.1:+24596156 | MS.gene86173:CDS |
ACAGTTGTAATTGTAGGTGC+TGG | 0.535522 | 5.1:+24593304 | MS.gene86173:CDS |
GTAGTTGGGTGTGGTAACTC+AGG | 0.547445 | 5.1:+24593817 | MS.gene86173:CDS |
GAGGGTGGGTGAGGCATGAG+GGG | 0.557145 | 5.1:-24593475 | None:intergenic |
TCAATGCTAGTGATATATGA+AGG | 0.561811 | 5.1:-24595754 | None:intergenic |
GCAGAAATTGCTAGGCCAGA+AGG | 0.563796 | 5.1:-24593328 | None:intergenic |
TTAGGCAAGCAGAAATTGCT+AGG | 0.575098 | 5.1:-24593336 | None:intergenic |
TGCTTACCCGAACCATTGGA+AGG | 0.577260 | 5.1:+24596109 | MS.gene86173:CDS |
ATGAGGTTAGAAACAAATGG+AGG | 0.583201 | 5.1:+24593608 | MS.gene86173:CDS |
CTGTCAAGGAGAGGCTTGTG+GGG | 0.591890 | 5.1:+24596158 | MS.gene86173:CDS |
TGGGTGTGGTAACTCAGGAA+TGG | 0.594724 | 5.1:+24593822 | MS.gene86173:CDS |
CTTACCCGAACCATTGGAAG+GGG | 0.603003 | 5.1:+24596111 | MS.gene86173:CDS |
GCTTATGATCTCCATAACTC+GGG | 0.611693 | 5.1:+24593850 | MS.gene86173:CDS |
AAACAAAGAACACTATAGAA+GGG | 0.614313 | 5.1:+24593635 | MS.gene86173:CDS |
GCTTACCCGAACCATTGGAA+GGG | 0.616793 | 5.1:+24596110 | MS.gene86173:CDS |
TGTACTGTGCAGGACTGTCA+AGG | 0.617174 | 5.1:+24596144 | MS.gene86173:CDS |
AACTGTCGAAAAGATTAAGG+AGG | 0.618608 | 5.1:+24595462 | MS.gene86173:CDS |
TGATCGTTTAAACCTCCACT+TGG | 0.624802 | 5.1:+24593432 | MS.gene86173:CDS |
GTAGAGAAATGATTCACCAA+GGG | 0.627830 | 5.1:+24595275 | MS.gene86173:CDS |
ACTGAATAACTTTGAAGGAG+AGG | 0.632240 | 5.1:+24593738 | MS.gene86173:CDS |
ACTGTCGAAAAGATTAAGGA+GGG | 0.634444 | 5.1:+24595463 | MS.gene86173:CDS |
GCCACTGGTGAAAATAGTGA+AGG | 0.638559 | 5.1:+24593694 | MS.gene86173:CDS |
AGCAAAACTCACTAGCCAAG+TGG | 0.645422 | 5.1:-24593447 | None:intergenic |
TGAGGTTAGAAACAAATGGA+GGG | 0.645489 | 5.1:+24593609 | MS.gene86173:CDS |
GAATAACTTTGAAGGAGAGG+TGG | 0.646286 | 5.1:+24593741 | MS.gene86173:CDS |
TGAGTCTGCTAAGTATGATG+AGG | 0.653647 | 5.1:+24593591 | MS.gene86173:CDS |
GGATGCAGAGTCAATTGCTG+AGG | 0.658304 | 5.1:+24596190 | MS.gene86173:CDS |
GACTTCGAACGACAATAGAT+GGG | 0.661642 | 5.1:-24593879 | None:intergenic |
ACAAAAGCATAACTAATGGG+TGG | 0.664351 | 5.1:+24595845 | MS.gene86173:CDS |
AGCACCTACAATTACAACTG+TGG | 0.666119 | 5.1:-24593302 | None:intergenic |
GATTCACCAAGGGATGCGAA+TGG | 0.671019 | 5.1:+24595285 | MS.gene86173:CDS |
AGTAGAGAAATGATTCACCA+AGG | 0.673155 | 5.1:+24595274 | MS.gene86173:CDS |
AAAACTCACTAGCCAAGTGG+AGG | 0.678012 | 5.1:-24593444 | None:intergenic |
TGTGCAGGACTGTCAAGGAG+AGG | 0.680971 | 5.1:+24596149 | MS.gene86173:CDS |
TCAACTGTGCGACAATAGTG+GGG | 0.708232 | 5.1:-24593571 | None:intergenic |
TTACCCGAACCATTGGAAGG+GGG | 0.721390 | 5.1:+24596112 | MS.gene86173:CDS |
AGTTCCAACATCAATAACTG+CGG | 0.739531 | 5.1:-24595443 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATATAT+GGG | - | chr5.1:24594518-24594499 | None:intergenic | 0.0% |
!! | TATATATATATATATATATA+TGG | - | chr5.1:24594519-24594500 | None:intergenic | 0.0% |
!! | AATTAGTAAATTATCTATAA+AGG | - | chr5.1:24595565-24595584 | None:intergenic | 10.0% |
!! | AATTATGAAAATTAAAAGTT+TGG | - | chr5.1:24596223-24596242 | None:intergenic | 10.0% |
!! | CAATATAAAAATAATATGTA+TGG | + | chr5.1:24595179-24595198 | MS.gene86173:intron | 10.0% |
!!! | ATCAATATTATACAATATTT+TGG | + | chr5.1:24594249-24594268 | MS.gene86173:intron | 10.0% |
!! | ACATACATACATATATATAT+AGG | + | chr5.1:24594727-24594746 | MS.gene86173:intron | 15.0% |
!! | ATATATTCATCATAAAAACA+GGG | + | chr5.1:24595010-24595029 | MS.gene86173:intron | 15.0% |
!! | CATAATCATAATTAAGATAA+AGG | + | chr5.1:24595889-24595908 | MS.gene86173:intron | 15.0% |
!! | CATACATACATATATATATA+GGG | + | chr5.1:24594728-24594747 | MS.gene86173:intron | 15.0% |
!! | TATATATTCATCATAAAAAC+AGG | + | chr5.1:24595009-24595028 | MS.gene86173:intron | 15.0% |
!! | TATTAATAACTTGAAGAATT+AGG | - | chr5.1:24596019-24596038 | None:intergenic | 15.0% |
!! | TTATAATATGTTCAAAACTA+TGG | + | chr5.1:24595675-24595694 | MS.gene86173:intron | 15.0% |
!!! | AGTTTTTTTTTTAACAATGT+TGG | + | chr5.1:24595049-24595068 | MS.gene86173:intron | 15.0% |
!! | AATGTAAGTTGTATATTGTA+AGG | - | chr5.1:24595937-24595956 | None:intergenic | 20.0% |
!! | AATTTAAATTTGTATACCCA+AGG | + | chr5.1:24593960-24593979 | MS.gene86173:intron | 20.0% |
!! | ACAATTAAATTGTCTATGTA+TGG | - | chr5.1:24594000-24594019 | None:intergenic | 20.0% |
!! | ATATATTGAAAAAGAATTGC+TGG | - | chr5.1:24594173-24594192 | None:intergenic | 20.0% |
!! | ATGTAAGTTGTATATTGTAA+GGG | - | chr5.1:24595936-24595955 | None:intergenic | 20.0% |
!! | GAGTTAGAAATATTATTTAC+CGG | - | chr5.1:24593904-24593923 | None:intergenic | 20.0% |
!! | TTCAAAATATGAATCAAAAG+AGG | + | chr5.1:24593789-24593808 | MS.gene86173:CDS | 20.0% |
!!! | ATCTGAGATTGAATTATTAA+TGG | + | chr5.1:24594290-24594309 | MS.gene86173:intron | 20.0% |
!!! | GGAAGTAAGAATAAATTTTT+TGG | + | chr5.1:24594332-24594351 | MS.gene86173:intron | 20.0% |
!!! | TCTGAGATTGAATTATTAAT+GGG | + | chr5.1:24594291-24594310 | MS.gene86173:intron | 20.0% |
!!! | TTATTTGATGTATTTTTCGA+AGG | + | chr5.1:24596046-24596065 | MS.gene86173:intron | 20.0% |
!!! | TTGTGTGCTTTTTTTTTTAT+TGG | + | chr5.1:24595973-24595992 | MS.gene86173:intron | 20.0% |
! | AAACAAAGAACACTATAGAA+GGG | + | chr5.1:24593635-24593654 | MS.gene86173:CDS | 25.0% |
! | AAATATGCTCTTAATGAGAA+AGG | + | chr5.1:24596074-24596093 | MS.gene86173:CDS | 25.0% |
! | AATAACTTGAAGAATTAGGA+AGG | - | chr5.1:24596015-24596034 | None:intergenic | 25.0% |
! | AATATGCTCTTAATGAGAAA+GGG | + | chr5.1:24596075-24596094 | MS.gene86173:CDS | 25.0% |
! | ATAACTTGAAGAATTAGGAA+GGG | - | chr5.1:24596014-24596033 | None:intergenic | 25.0% |
! | CACTCTAAATATTACAAATC+TGG | + | chr5.1:24593766-24593785 | MS.gene86173:CDS | 25.0% |
! | CATATTTGTCTATGTATTGA+AGG | - | chr5.1:24593531-24593550 | None:intergenic | 25.0% |
! | CTGAGATTGAATTATTAATG+GGG | + | chr5.1:24594292-24594311 | MS.gene86173:intron | 25.0% |
! | GAGAAAAAGAAAGTTGTATT+TGG | + | chr5.1:24595775-24595794 | MS.gene86173:CDS | 25.0% |
! | GTAAGATTCTTCATTTGTAA+AGG | - | chr5.1:24595415-24595434 | None:intergenic | 25.0% |
! | TTACAAATGAAGAATCTTAC+AGG | + | chr5.1:24595415-24595434 | MS.gene86173:CDS | 25.0% |
! | TTATCGGCAAAACTAAAATA+TGG | + | chr5.1:24595349-24595368 | MS.gene86173:CDS | 25.0% |
!! | ATATGAATCAAAAGAGGTTT+TGG | + | chr5.1:24593795-24593814 | MS.gene86173:CDS | 25.0% |
!! | TAAAGACAATATGTGTTTTG+CGG | + | chr5.1:24595208-24595227 | MS.gene86173:intron | 25.0% |
!!! | TTTTTTTAGACCTATCTAGT+TGG | + | chr5.1:24594206-24594225 | MS.gene86173:intron | 25.0% |
ACACCTTCATAAAAGTAAGT+TGG | - | chr5.1:24594824-24594843 | None:intergenic | 30.0% | |
ATGATGAGGTTAGAAACAAA+TGG | + | chr5.1:24593605-24593624 | MS.gene86173:CDS | 30.0% | |
ATGTCACACACTTACTTTAA+TGG | - | chr5.1:24595706-24595725 | None:intergenic | 30.0% | |
ATTTGTAAAGGTCCCAATTT+GGG | - | chr5.1:24595403-24595422 | None:intergenic | 30.0% | |
GAAACAAAGAACACTATAGA+AGG | + | chr5.1:24593634-24593653 | MS.gene86173:CDS | 30.0% | |
GGAGATTTATATGTATCCTT+GGG | - | chr5.1:24593979-24593998 | None:intergenic | 30.0% | |
GGATGCTATCATTACTTTAT+CGG | + | chr5.1:24595333-24595352 | MS.gene86173:CDS | 30.0% | |
GTATTGAAGGAATTGGTATT+TGG | - | chr5.1:24593518-24593537 | None:intergenic | 30.0% | |
TCAATGCTAGTGATATATGA+AGG | - | chr5.1:24595757-24595776 | None:intergenic | 30.0% | |
TGGAGATTTATATGTATCCT+TGG | - | chr5.1:24593980-24593999 | None:intergenic | 30.0% | |
TGTCTATGTATTGAAGGAAT+TGG | - | chr5.1:24593525-24593544 | None:intergenic | 30.0% | |
TGTGTGACATAACTTTGATT+TGG | + | chr5.1:24595716-24595735 | MS.gene86173:intron | 30.0% | |
TTATAGATGTCCAACTAGAT+AGG | - | chr5.1:24594219-24594238 | None:intergenic | 30.0% | |
! | GCTACAAAAGCATAACTAAT+GGG | + | chr5.1:24595842-24595861 | MS.gene86173:CDS | 30.0% |
!! | ACACCAACTTACTTTTATGA+AGG | + | chr5.1:24594818-24594837 | MS.gene86173:intron | 30.0% |
!! | ATATTTTCCAGTTGCTATTG+TGG | + | chr5.1:24595312-24595331 | MS.gene86173:CDS | 30.0% |
!!! | ATATTTTGGTGTGTTAACCA+AGG | + | chr5.1:24594263-24594282 | MS.gene86173:intron | 30.0% |
!!! | GGGGCTAATTTTTTTTTTGA+AGG | + | chr5.1:24594311-24594330 | MS.gene86173:intron | 30.0% |
!!! | TATTTTGGTGTGTTAACCAA+GGG | + | chr5.1:24594264-24594283 | MS.gene86173:intron | 30.0% |
AACTGTCGAAAAGATTAAGG+AGG | + | chr5.1:24595462-24595481 | MS.gene86173:CDS | 35.0% | |
ACTGTCGAAAAGATTAAGGA+GGG | + | chr5.1:24595463-24595482 | MS.gene86173:CDS | 35.0% | |
AGGGATATTGGAAGTTTATG+AGG | + | chr5.1:24593654-24593673 | MS.gene86173:CDS | 35.0% | |
AGTAGAGAAATGATTCACCA+AGG | + | chr5.1:24595274-24595293 | MS.gene86173:CDS | 35.0% | |
AGTTCCAACATCAATAACTG+CGG | - | chr5.1:24595446-24595465 | None:intergenic | 35.0% | |
ATATATGAAGGAACAACCTG+TGG | - | chr5.1:24595745-24595764 | None:intergenic | 35.0% | |
ATGAGGTTAGAAACAAATGG+AGG | + | chr5.1:24593608-24593627 | MS.gene86173:CDS | 35.0% | |
ATGATTGTTGTGCTTCTCTT+TGG | + | chr5.1:24593395-24593414 | MS.gene86173:CDS | 35.0% | |
ATTAATCATCTACACACACG+AGG | - | chr5.1:24595520-24595539 | None:intergenic | 35.0% | |
CATTTGTAAAGGTCCCAATT+TGG | - | chr5.1:24595404-24595423 | None:intergenic | 35.0% | |
CTAAAAGACACCTTCACAAA+AGG | - | chr5.1:24594769-24594788 | None:intergenic | 35.0% | |
GAACACTATAGAAGGGATAT+TGG | + | chr5.1:24593642-24593661 | MS.gene86173:CDS | 35.0% | |
GAAGGAATTGGTATTTGGAT+AGG | - | chr5.1:24593513-24593532 | None:intergenic | 35.0% | |
GAATCCACAGTTGTAATTGT+AGG | + | chr5.1:24593298-24593317 | MS.gene86173:CDS | 35.0% | |
GAATTGGTATTTGGATAGGT+AGG | - | chr5.1:24593509-24593528 | None:intergenic | 35.0% | |
GATTAAGGAGGGATCTATAA+AGG | + | chr5.1:24595474-24595493 | MS.gene86173:CDS | 35.0% | |
GTAGAGAAATGATTCACCAA+GGG | + | chr5.1:24595275-24595294 | MS.gene86173:CDS | 35.0% | |
TGAGGTTAGAAACAAATGGA+GGG | + | chr5.1:24593609-24593628 | MS.gene86173:CDS | 35.0% | |
TGCTTATGATCTCCATAACT+CGG | + | chr5.1:24593849-24593868 | MS.gene86173:CDS | 35.0% | |
TGGAACTGTCGAAAAGATTA+AGG | + | chr5.1:24595459-24595478 | MS.gene86173:CDS | 35.0% | |
! | ACAAAAGCATAACTAATGGG+TGG | + | chr5.1:24595845-24595864 | MS.gene86173:CDS | 35.0% |
! | ACTGAATAACTTTGAAGGAG+AGG | + | chr5.1:24593738-24593757 | MS.gene86173:CDS | 35.0% |
! | GGCTACAAAAGCATAACTAA+TGG | + | chr5.1:24595841-24595860 | MS.gene86173:CDS | 35.0% |
! | TATGGTGATTTGTCCAAGTA+CGG | + | chr5.1:24595367-24595386 | MS.gene86173:CDS | 35.0% |
!! | AGTGGGGTTTTATGTTGAAA+TGG | - | chr5.1:24593558-24593577 | None:intergenic | 35.0% |
!! | CAAAAGAGGTTTTGGTAGTT+GGG | + | chr5.1:24593803-24593822 | MS.gene86173:CDS | 35.0% |
!! | TCAAAAGAGGTTTTGGTAGT+TGG | + | chr5.1:24593802-24593821 | MS.gene86173:CDS | 35.0% |
AAAATGCTTACCCGAACCAT+TGG | + | chr5.1:24596105-24596124 | MS.gene86173:CDS | 40.0% | |
AAAGTGCAAATCACACCTTG+AGG | + | chr5.1:24594866-24594885 | MS.gene86173:intron | 40.0% | |
AAGTCCGCAGTTATTGATGT+TGG | + | chr5.1:24595439-24595458 | MS.gene86173:CDS | 40.0% | |
ACAGTTGTAATTGTAGGTGC+TGG | + | chr5.1:24593304-24593323 | MS.gene86173:CDS | 40.0% | |
AGCACCTACAATTACAACTG+TGG | - | chr5.1:24593305-24593324 | None:intergenic | 40.0% | |
ATAGCATCCACAATAGCAAC+TGG | - | chr5.1:24595322-24595341 | None:intergenic | 40.0% | |
ATCTATTGTCGTTCGAAGTC+CGG | + | chr5.1:24593882-24593901 | MS.gene86173:CDS | 40.0% | |
ATTGTTGTGCTTCTCTTTGG+AGG | + | chr5.1:24593398-24593417 | MS.gene86173:CDS | 40.0% | |
CCTGGACTGAATAACTTTGA+AGG | + | chr5.1:24593733-24593752 | MS.gene86173:CDS | 40.0% | |
CCTTCAAAGTTATTCAGTCC+AGG | - | chr5.1:24593736-24593755 | None:intergenic | 40.0% | |
GACTTCGAACGACAATAGAT+GGG | - | chr5.1:24593882-24593901 | None:intergenic | 40.0% | |
GCTTATGATCTCCATAACTC+GGG | + | chr5.1:24593850-24593869 | MS.gene86173:CDS | 40.0% | |
GGGATTTATCGTCCCAAATT+GGG | + | chr5.1:24595388-24595407 | MS.gene86173:CDS | 40.0% | |
GGTATTTGGATAGGTAGGTT+GGG | - | chr5.1:24593504-24593523 | None:intergenic | 40.0% | |
GGTTATATTCCTAATGTGCC+TGG | + | chr5.1:24593715-24593734 | MS.gene86173:CDS | 40.0% | |
TGAGTCTGCTAAGTATGATG+AGG | + | chr5.1:24593591-24593610 | MS.gene86173:CDS | 40.0% | |
TGATCGTTTAAACCTCCACT+TGG | + | chr5.1:24593432-24593451 | MS.gene86173:CDS | 40.0% | |
TGCTAAAAGACACCACCAAA+GGG | + | chr5.1:24594896-24594915 | MS.gene86173:intron | 40.0% | |
TGGTATTTGGATAGGTAGGT+TGG | - | chr5.1:24593505-24593524 | None:intergenic | 40.0% | |
TTAGGCAAGCAGAAATTGCT+AGG | - | chr5.1:24593339-24593358 | None:intergenic | 40.0% | |
TTATTCAGTCCAGGCACATT+AGG | - | chr5.1:24593727-24593746 | None:intergenic | 40.0% | |
TTGCTAAAAGACACCACCAA+AGG | + | chr5.1:24594895-24594914 | MS.gene86173:intron | 40.0% | |
! | ACCTTCACTATTTTCACCAG+TGG | - | chr5.1:24593698-24593717 | None:intergenic | 40.0% |
! | ATGGTGATTTGTCCAAGTAC+GGG | + | chr5.1:24595368-24595387 | MS.gene86173:CDS | 40.0% |
! | CATAACTAATGGGTGGCTTA+AGG | + | chr5.1:24595852-24595871 | MS.gene86173:CDS | 40.0% |
! | CTAGAAGACACCTTTTGTGA+AGG | + | chr5.1:24594756-24594775 | MS.gene86173:intron | 40.0% |
! | GAATAACTTTGAAGGAGAGG+TGG | + | chr5.1:24593741-24593760 | MS.gene86173:CDS | 40.0% |
! | TTTTAGCAAGTCACACCTCA+AGG | - | chr5.1:24594884-24594903 | None:intergenic | 40.0% |
!! | AACTTTGATTTGGATGCCAC+AGG | + | chr5.1:24595726-24595745 | MS.gene86173:intron | 40.0% |
!! | GAGAGATGCAGTTTTGTGTT+AGG | - | chr5.1:24593357-24593376 | None:intergenic | 40.0% |
!!! | TGGTTCGGGTAAGCATTTTT+TGG | - | chr5.1:24596104-24596123 | None:intergenic | 40.0% |
AAAACTCACTAGCCAAGTGG+AGG | - | chr5.1:24593447-24593466 | None:intergenic | 45.0% | |
AAGTTTCTTGTGATCGCCAC+TGG | + | chr5.1:24593679-24593698 | MS.gene86173:CDS | 45.0% | |
ACTCAACTGTGCGACAATAG+TGG | - | chr5.1:24593576-24593595 | None:intergenic | 45.0% | |
AGCAAAACTCACTAGCCAAG+TGG | - | chr5.1:24593450-24593469 | None:intergenic | 45.0% | |
ATTTCACCATTCGCATCCCT+TGG | - | chr5.1:24595294-24595313 | None:intergenic | 45.0% | |
CGGGATTTATCGTCCCAAAT+TGG | + | chr5.1:24595387-24595406 | MS.gene86173:CDS | 45.0% | |
CTCAACTGTGCGACAATAGT+GGG | - | chr5.1:24593575-24593594 | None:intergenic | 45.0% | |
GCCACTGGTGAAAATAGTGA+AGG | + | chr5.1:24593694-24593713 | MS.gene86173:CDS | 45.0% | |
GGACTTCGAACGACAATAGA+TGG | - | chr5.1:24593883-24593902 | None:intergenic | 45.0% | |
TAAAAGACACCACCAAAGGG+TGG | + | chr5.1:24594899-24594918 | MS.gene86173:intron | 45.0% | |
TCAACTGTGCGACAATAGTG+GGG | - | chr5.1:24593574-24593593 | None:intergenic | 45.0% | |
! | GATCATGGATTGTACTGTGC+AGG | + | chr5.1:24596134-24596153 | MS.gene86173:CDS | 45.0% |
! | TTTGGTGTGTTAACCAAGGG+CGG | + | chr5.1:24594267-24594286 | MS.gene86173:intron | 45.0% |
!! | TATTCAAAAAATAATAATAA+TGG | - | chr5.1:24595090-24595109 | None:intergenic | 5.0% |
AACCATTGGAAGGGGGATCA+TGG | + | chr5.1:24596119-24596138 | MS.gene86173:CDS | 50.0% | |
ACTGTCAAGGAGAGGCTTGT+GGG | + | chr5.1:24596157-24596176 | MS.gene86173:CDS | 50.0% | |
AGGCTTGTGGGGAGTCAAAA+TGG | + | chr5.1:24596169-24596188 | MS.gene86173:CDS | 50.0% | |
ATCCATGATCCCCCTTCCAA+TGG | - | chr5.1:24596124-24596143 | None:intergenic | 50.0% | |
CTTACCCGAACCATTGGAAG+GGG | + | chr5.1:24596111-24596130 | MS.gene86173:CDS | 50.0% | |
GATTCACCAAGGGATGCGAA+TGG | + | chr5.1:24595285-24595304 | MS.gene86173:CDS | 50.0% | |
GCAGAAATTGCTAGGCCAGA+AGG | - | chr5.1:24593331-24593350 | None:intergenic | 50.0% | |
GCTTACCCGAACCATTGGAA+GGG | + | chr5.1:24596110-24596129 | MS.gene86173:CDS | 50.0% | |
GGATGCAGAGTCAATTGCTG+AGG | + | chr5.1:24596190-24596209 | MS.gene86173:CDS | 50.0% | |
GGGACGATAAATCCCGTACT+TGG | - | chr5.1:24595383-24595402 | None:intergenic | 50.0% | |
GTAGTTGGGTGTGGTAACTC+AGG | + | chr5.1:24593817-24593836 | MS.gene86173:CDS | 50.0% | |
TCTTGCTACAAGCCACCCTT+TGG | - | chr5.1:24594914-24594933 | None:intergenic | 50.0% | |
TGATCCCCCTTCCAATGGTT+CGG | - | chr5.1:24596119-24596138 | None:intergenic | 50.0% | |
TGCTTACCCGAACCATTGGA+AGG | + | chr5.1:24596109-24596128 | MS.gene86173:CDS | 50.0% | |
TGGGTGTGGTAACTCAGGAA+TGG | + | chr5.1:24593822-24593841 | MS.gene86173:CDS | 50.0% | |
TGTACTGTGCAGGACTGTCA+AGG | + | chr5.1:24596144-24596163 | MS.gene86173:CDS | 50.0% | |
TTACCCGAACCATTGGAAGG+GGG | + | chr5.1:24596112-24596131 | MS.gene86173:CDS | 50.0% | |
TTCAATCTCAGATCCGCCCT+TGG | - | chr5.1:24594283-24594302 | None:intergenic | 50.0% | |
! | GATGCGATCGTTTTCGCAAC+TGG | + | chr5.1:24595820-24595839 | MS.gene86173:CDS | 50.0% |
!! | ATGGGTTAGCACCCGAGTTA+TGG | - | chr5.1:24593864-24593883 | None:intergenic | 50.0% |
!! | ATTGTAGGTGCTGGTCCTTC+TGG | + | chr5.1:24593313-24593332 | MS.gene86173:CDS | 50.0% |
!! | GAGGTTTTGGTAGTTGGGTG+TGG | + | chr5.1:24593808-24593827 | MS.gene86173:CDS | 50.0% |
CTGTCAAGGAGAGGCTTGTG+GGG | + | chr5.1:24596158-24596177 | MS.gene86173:CDS | 55.0% | |
GACTGTCAAGGAGAGGCTTG+TGG | + | chr5.1:24596156-24596175 | MS.gene86173:CDS | 55.0% | |
GATCCCCCTTCCAATGGTTC+GGG | - | chr5.1:24596118-24596137 | None:intergenic | 55.0% | |
TGCTACAAGCCACCCTTTGG+TGG | - | chr5.1:24594911-24594930 | None:intergenic | 55.0% | |
TGTGCAGGACTGTCAAGGAG+AGG | + | chr5.1:24596149-24596168 | MS.gene86173:CDS | 55.0% | |
! | GATAGGTAGGTTGGGCCTGA+GGG | - | chr5.1:24593496-24593515 | None:intergenic | 55.0% |
TGAGGGTGGGTGAGGCATGA+GGG | - | chr5.1:24593479-24593498 | None:intergenic | 60.0% | |
! | GGATAGGTAGGTTGGGCCTG+AGG | - | chr5.1:24593497-24593516 | None:intergenic | 60.0% |
CTCATGCCTCACCCACCCTC+AGG | + | chr5.1:24593478-24593497 | MS.gene86173:CDS | 65.0% | |
CTGAGGGTGGGTGAGGCATG+AGG | - | chr5.1:24593480-24593499 | None:intergenic | 65.0% | |
GAGGGTGGGTGAGGCATGAG+GGG | - | chr5.1:24593478-24593497 | None:intergenic | 65.0% | |
! | AGGTAGGTTGGGCCTGAGGG+TGG | - | chr5.1:24593493-24593512 | None:intergenic | 65.0% |
! | GGTAGGTTGGGCCTGAGGGT+GGG | - | chr5.1:24593492-24593511 | None:intergenic | 65.0% |
GTTGGGCCTGAGGGTGGGTG+AGG | - | chr5.1:24593487-24593506 | None:intergenic | 70.0% | |
! | TGCGCGCGCGCGCGCGTGTG+TGG | - | chr5.1:24594460-24594479 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 24593292 | 24596244 | 24593292 | ID=MS.gene86173 |
chr5.1 | mRNA | 24593292 | 24596244 | 24593292 | ID=MS.gene86173.t1;Parent=MS.gene86173 |
chr5.1 | exon | 24593292 | 24593903 | 24593292 | ID=MS.gene86173.t1.exon1;Parent=MS.gene86173.t1 |
chr5.1 | CDS | 24593292 | 24593903 | 24593292 | ID=cds.MS.gene86173.t1;Parent=MS.gene86173.t1 |
chr5.1 | exon | 24595262 | 24595495 | 24595262 | ID=MS.gene86173.t1.exon2;Parent=MS.gene86173.t1 |
chr5.1 | CDS | 24595262 | 24595495 | 24595262 | ID=cds.MS.gene86173.t1;Parent=MS.gene86173.t1 |
chr5.1 | exon | 24595748 | 24595873 | 24595748 | ID=MS.gene86173.t1.exon3;Parent=MS.gene86173.t1 |
chr5.1 | CDS | 24595748 | 24595873 | 24595748 | ID=cds.MS.gene86173.t1;Parent=MS.gene86173.t1 |
chr5.1 | exon | 24596068 | 24596244 | 24596068 | ID=MS.gene86173.t1.exon4;Parent=MS.gene86173.t1 |
chr5.1 | CDS | 24596068 | 24596244 | 24596068 | ID=cds.MS.gene86173.t1;Parent=MS.gene86173.t1 |
Gene Sequence |
Protein sequence |