Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87897.t1 | XP_013451524.1 | 97.5 | 434 | 7 | 2 | 18 | 447 | 153 | 586 | 2.50E-225 | 791.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87897.t1 | Q9FKP1 | 52.3 | 432 | 200 | 3 | 18 | 447 | 140 | 567 | 7.2e-112 | 405.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87897.t1 | A0A072U799 | 97.5 | 434 | 7 | 2 | 18 | 447 | 153 | 586 | 1.8e-225 | 791.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene87897 | 0.802666 | 5.03E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene87897 | 0.837637 | 4.62E-57 | -1.69E-46 |
| MS.gene050303 | MS.gene87897 | 0.804703 | 1.90E-49 | -1.69E-46 |
| MS.gene050438 | MS.gene87897 | 0.808394 | 3.16E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene87897 | 0.805017 | 1.63E-49 | -1.69E-46 |
| MS.gene050586 | MS.gene87897 | 0.808415 | 3.13E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene87897 | 0.820669 | 6.07E-53 | -1.69E-46 |
| MS.gene050815 | MS.gene87897 | 0.841568 | 4.39E-58 | -1.69E-46 |
| MS.gene051265 | MS.gene87897 | 0.818405 | 1.99E-52 | -1.69E-46 |
| MS.gene051626 | MS.gene87897 | 0.809917 | 1.49E-50 | -1.69E-46 |
| MS.gene051789 | MS.gene87897 | 0.819559 | 1.09E-52 | -1.69E-46 |
| MS.gene05288 | MS.gene87897 | 0.822658 | 2.11E-53 | -1.69E-46 |
| MS.gene05289 | MS.gene87897 | 0.807178 | 5.74E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene87897 | 0.805511 | 1.29E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene87897 | 0.866797 | 2.19E-65 | -1.69E-46 |
| MS.gene053184 | MS.gene87897 | 0.829819 | 4.16E-55 | -1.69E-46 |
| MS.gene053630 | MS.gene87897 | 0.807283 | 5.45E-50 | -1.69E-46 |
| MS.gene054184 | MS.gene87897 | 0.842301 | 2.81E-58 | -1.69E-46 |
| MS.gene054185 | MS.gene87897 | 0.844433 | 7.58E-59 | -1.69E-46 |
| MS.gene054596 | MS.gene87897 | 0.806436 | 8.23E-50 | -1.69E-46 |
| MS.gene054713 | MS.gene87897 | 0.894165 | 3.19E-75 | -1.69E-46 |
| MS.gene055356 | MS.gene87897 | 0.801834 | 7.47E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene87897 | 0.806193 | 9.26E-50 | -1.69E-46 |
| MS.gene055608 | MS.gene87897 | 0.84379 | 1.13E-58 | -1.69E-46 |
| MS.gene055860 | MS.gene87897 | 0.828124 | 1.07E-54 | -1.69E-46 |
| MS.gene057693 | MS.gene87897 | 0.800173 | 1.63E-48 | -1.69E-46 |
| MS.gene058042 | MS.gene87897 | 0.875183 | 3.77E-68 | -1.69E-46 |
| MS.gene058168 | MS.gene87897 | 0.852027 | 6.04E-61 | -1.69E-46 |
| MS.gene059006 | MS.gene87897 | 0.850177 | 2.01E-60 | -1.69E-46 |
| MS.gene059124 | MS.gene87897 | 0.831832 | 1.33E-55 | -1.69E-46 |
| MS.gene060137 | MS.gene87897 | -0.813488 | 2.50E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene87897 | 0.846009 | 2.84E-59 | -1.69E-46 |
| MS.gene060998 | MS.gene87897 | 0.80268 | 5.00E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87897.t1 | MTR_6g027580 | 97.465 | 434 | 7 | 2 | 18 | 447 | 153 | 586 | 0.0 | 833 |
| MS.gene87897.t1 | MTR_8g021180 | 43.668 | 458 | 218 | 5 | 25 | 444 | 191 | 646 | 2.30e-113 | 347 |
| MS.gene87897.t1 | MTR_7g086690 | 46.847 | 444 | 217 | 7 | 18 | 447 | 145 | 583 | 6.13e-113 | 344 |
| MS.gene87897.t1 | MTR_6g027570 | 48.165 | 436 | 215 | 6 | 18 | 447 | 142 | 572 | 3.62e-110 | 337 |
| MS.gene87897.t1 | MTR_7g113730 | 29.621 | 449 | 283 | 10 | 3 | 443 | 92 | 515 | 8.87e-39 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87897.t1 | AT5G17860 | 52.315 | 432 | 200 | 3 | 18 | 447 | 140 | 567 | 2.24e-146 | 429 |
| MS.gene87897.t1 | AT5G17860 | 49.769 | 432 | 176 | 4 | 18 | 447 | 140 | 532 | 4.66e-131 | 389 |
| MS.gene87897.t1 | AT3G14070 | 42.366 | 465 | 227 | 8 | 18 | 444 | 176 | 637 | 1.04e-115 | 353 |
| MS.gene87897.t1 | AT1G54115 | 41.277 | 470 | 227 | 7 | 18 | 444 | 175 | 638 | 6.59e-115 | 351 |
| MS.gene87897.t1 | AT5G17850 | 45.455 | 440 | 214 | 9 | 18 | 444 | 130 | 556 | 4.63e-113 | 343 |
| MS.gene87897.t1 | AT5G17850 | 45.455 | 440 | 214 | 9 | 18 | 444 | 130 | 556 | 4.63e-113 | 343 |
| MS.gene87897.t1 | AT1G08960 | 31.947 | 457 | 266 | 11 | 3 | 442 | 114 | 542 | 1.95e-50 | 179 |
Find 64 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCGGTTTAAATAGCATTT+TGG | 0.144184 | 6.1:-9829842 | MS.gene87897:CDS |
| ACCTTTGTTTCTTGTTTATA+AGG | 0.167874 | 6.1:-9828688 | MS.gene87897:CDS |
| TTAGGAACAACATAAGAATT+AGG | 0.200723 | 6.1:+9828833 | None:intergenic |
| TCCTAAGGATAGTTCACTTT+TGG | 0.246796 | 6.1:-9828816 | MS.gene87897:CDS |
| TCATTGATTGGAATTGTCTT+TGG | 0.261248 | 6.1:-9829208 | MS.gene87897:CDS |
| ATTTCAATTGGATATGTAAT+TGG | 0.264822 | 6.1:-9829055 | MS.gene87897:CDS |
| GAATCTGGCATACCATTATT+AGG | 0.266587 | 6.1:-9829532 | MS.gene87897:CDS |
| GGTGCACAAATTGCTGTTTC+AGG | 0.282821 | 6.1:-9828932 | MS.gene87897:CDS |
| CAAGAAGATGTTTGTTTCCT+TGG | 0.294111 | 6.1:-9829147 | MS.gene87897:CDS |
| CATCTACGAAGTTGACAAAA+AGG | 0.319201 | 6.1:-9829590 | MS.gene87897:CDS |
| TAGAAACTTCCACAAGTAAT+AGG | 0.324007 | 6.1:+9829417 | None:intergenic |
| ACCTCTTGTTCTTTCAGCAT+GGG | 0.351823 | 6.1:-9828864 | MS.gene87897:CDS |
| TATTTAACATCATCATTGAT+TGG | 0.352924 | 6.1:-9829220 | MS.gene87897:CDS |
| TTTATCAACTGAAACTTCAT+TGG | 0.356036 | 6.1:+9829762 | None:intergenic |
| TGTGATGATTTAGTTGAATC+TGG | 0.360613 | 6.1:-9829547 | MS.gene87897:CDS |
| CAAGGAAACAAACATCTTCT+TGG | 0.367485 | 6.1:+9829148 | None:intergenic |
| ACTTCAATACTTTGTAAAAT+CGG | 0.368947 | 6.1:+9829469 | None:intergenic |
| TATGCAACTAAGCTACTCTT+TGG | 0.370812 | 6.1:+9829241 | None:intergenic |
| AAACAAGAAACAAAGGTAAA+TGG | 0.374670 | 6.1:+9828694 | None:intergenic |
| ACAAAGTATTGAAGTAAAAG+AGG | 0.381832 | 6.1:-9829461 | MS.gene87897:CDS |
| CAAAGAATTGCGAATAAAAT+CGG | 0.396842 | 6.1:+9829289 | None:intergenic |
| TAGGAACAACATAAGAATTA+GGG | 0.400579 | 6.1:+9828834 | None:intergenic |
| TACCTCTTGTTCTTTCAGCA+TGG | 0.401236 | 6.1:-9828865 | MS.gene87897:CDS |
| TCGTCGGCATAACCTAATAA+TGG | 0.416187 | 6.1:+9829520 | None:intergenic |
| CTAGGTGATTTGATAGCAAA+TGG | 0.424425 | 6.1:-9828983 | MS.gene87897:CDS |
| TGTTTGTTTCCTTGGCTAGC+TGG | 0.426986 | 6.1:-9829139 | MS.gene87897:CDS |
| GAAGAATGAACAAAGAGAAA+AGG | 0.434641 | 6.1:+9829710 | None:intergenic |
| TAATTCTTATGTTGTTCCTA+AGG | 0.435073 | 6.1:-9828831 | MS.gene87897:CDS |
| CGGTTGTGAATGAAGAAAAC+TGG | 0.441944 | 6.1:-9829348 | MS.gene87897:CDS |
| CTTCTTATCATCATTTCCAT+TGG | 0.447250 | 6.1:-9829691 | MS.gene87897:CDS |
| ATAAGGTTAGCCATGGCAAT+TGG | 0.456604 | 6.1:-9828671 | MS.gene87897:CDS |
| GCTGTTTCAGGTTGTTATGC+TGG | 0.461252 | 6.1:-9828920 | MS.gene87897:CDS |
| TCTTTATGTTTGTGCCGTCT+CGG | 0.461328 | 6.1:-9829623 | MS.gene87897:CDS |
| TTGGCTTGGGGAAATTCTCT+AGG | 0.480332 | 6.1:-9829001 | MS.gene87897:CDS |
| AATTCTTTGCAATACACAAA+TGG | 0.485520 | 6.1:-9829275 | MS.gene87897:CDS |
| ACGGTTAGCCCTAAAATTGA+AGG | 0.489309 | 6.1:+9829025 | None:intergenic |
| ACAACACTAGCAAAGAAATC+AGG | 0.497139 | 6.1:+9829892 | None:intergenic |
| ACCAAGAAAACTCACTATAC+CGG | 0.516679 | 6.1:-9829368 | MS.gene87897:CDS |
| TGCGAATAAAATCGGTGCTA+AGG | 0.517302 | 6.1:+9829297 | None:intergenic |
| CCCAAAAGTGAACTATCCTT+AGG | 0.527760 | 6.1:+9828815 | None:intergenic |
| CCTCTTGTTCTTTCAGCATG+GGG | 0.528941 | 6.1:-9828863 | MS.gene87897:CDS |
| CTTGTTTATAAGGTTAGCCA+TGG | 0.529470 | 6.1:-9828678 | MS.gene87897:CDS |
| AGAATTTCCCCAAGCCAAAA+CGG | 0.537248 | 6.1:+9829006 | None:intergenic |
| GGAAACAAACATCTTCTTGG+TGG | 0.548039 | 6.1:+9829151 | None:intergenic |
| TTGTTTCCTTGGCTAGCTGG+TGG | 0.552371 | 6.1:-9829136 | MS.gene87897:CDS |
| TGGAATTGTCTTTGGAAACA+TGG | 0.555855 | 6.1:-9829200 | MS.gene87897:CDS |
| CAATACACAAATGGAAAATG+TGG | 0.556780 | 6.1:-9829266 | MS.gene87897:CDS |
| CCCCATGCTGAAAGAACAAG+AGG | 0.572553 | 6.1:+9828863 | None:intergenic |
| ATTAAGAGCACCAATTGCCA+TGG | 0.587028 | 6.1:+9828661 | None:intergenic |
| ATCATTATCAGTATCATCGT+CGG | 0.588616 | 6.1:+9829504 | None:intergenic |
| AGTTCAAACAATGGCGCGGT+CGG | 0.591132 | 6.1:-9829859 | MS.gene87897:CDS |
| GATGAAATGTGTGGCCGAGA+CGG | 0.594481 | 6.1:+9829609 | None:intergenic |
| TTTGATAGCAAATGGTGCTA+TGG | 0.595159 | 6.1:-9828975 | MS.gene87897:CDS |
| GTAACTGATATAACCGCGTA+TGG | 0.604588 | 6.1:+9829319 | None:intergenic |
| CACTAGTGAGAATTCTAGCA+TGG | 0.614238 | 6.1:+9830226 | None:intergenic |
| GAAAATCCACCAGCTAGCCA+AGG | 0.618132 | 6.1:+9829130 | None:intergenic |
| CCCATCAAAATATTGAACAT+AGG | 0.620623 | 6.1:+9828896 | None:intergenic |
| TATGATTCCCAAAACAGCTG+TGG | 0.624786 | 6.1:+9829801 | None:intergenic |
| ACCTTATAAACAAGAAACAA+AGG | 0.640232 | 6.1:+9828687 | None:intergenic |
| CACGAGTTCAAACAATGGCG+CGG | 0.651985 | 6.1:-9829863 | MS.gene87897:CDS |
| TCTTTCACGAGTTCAAACAA+TGG | 0.673972 | 6.1:-9829868 | MS.gene87897:CDS |
| ATGGACTTATATAATAGCTG+AGG | 0.679474 | 6.1:-9829095 | MS.gene87897:CDS |
| AAACTGGTCGAAACCATACG+CGG | 0.707194 | 6.1:-9829332 | MS.gene87897:CDS |
| AACTTCGTAGATGAAATGTG+TGG | 0.768427 | 6.1:+9829600 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTCAATACTTTGTAAAAT+CGG | + | chr6.1:9829416-9829435 | None:intergenic | 20.0% |
| !! | ATTTCAATTGGATATGTAAT+TGG | - | chr6.1:9829827-9829846 | MS.gene87897:CDS | 20.0% |
| !! | TATTTAACATCATCATTGAT+TGG | - | chr6.1:9829662-9829681 | MS.gene87897:CDS | 20.0% |
| !!! | TTTTAGTTAAGAAGAATATG+AGG | - | chr6.1:9830134-9830153 | MS.gene87897:intron | 20.0% |
| ! | AAAAAGACTAATCTTTCCAA+TGG | + | chr6.1:9829210-9829229 | None:intergenic | 25.0% |
| ! | AAACAAGAAACAAAGGTAAA+TGG | + | chr6.1:9830191-9830210 | None:intergenic | 25.0% |
| ! | AATTCTTTGCAATACACAAA+TGG | - | chr6.1:9829607-9829626 | MS.gene87897:CDS | 25.0% |
| ! | ACCTTATAAACAAGAAACAA+AGG | + | chr6.1:9830198-9830217 | None:intergenic | 25.0% |
| ! | CAAAGAATTGCGAATAAAAT+CGG | + | chr6.1:9829596-9829615 | None:intergenic | 25.0% |
| ! | TAATTCTTATGTTGTTCCTA+AGG | - | chr6.1:9830051-9830070 | MS.gene87897:intron | 25.0% |
| ! | TAGGAACAACATAAGAATTA+GGG | + | chr6.1:9830051-9830070 | None:intergenic | 25.0% |
| ! | TTAGGAACAACATAAGAATT+AGG | + | chr6.1:9830052-9830071 | None:intergenic | 25.0% |
| ! | TTTATCAACTGAAACTTCAT+TGG | + | chr6.1:9829123-9829142 | None:intergenic | 25.0% |
| !! | ACCTTTGTTTCTTGTTTATA+AGG | - | chr6.1:9830194-9830213 | MS.gene87897:CDS | 25.0% |
| !! | CAAATCTTTTATTGTAACCT+TGG | - | chr6.1:9828792-9828811 | MS.gene87897:CDS | 25.0% |
| !!! | AATATTGTTTTTGATGGTAG+GGG | - | chr6.1:9830093-9830112 | MS.gene87897:intron | 25.0% |
| !!! | ACAAAGTATTGAAGTAAAAG+AGG | - | chr6.1:9829421-9829440 | MS.gene87897:CDS | 25.0% |
| !!! | ACAATATTGTTTTTGATGGT+AGG | - | chr6.1:9830091-9830110 | MS.gene87897:intron | 25.0% |
| !!! | ATTGGAAAGATTAGTCTTTT+TGG | - | chr6.1:9829209-9829228 | MS.gene87897:CDS | 25.0% |
| !!! | CAATATTGTTTTTGATGGTA+GGG | - | chr6.1:9830092-9830111 | MS.gene87897:intron | 25.0% |
| !!! | CCTATGTTCAATATTTTGAT+GGG | - | chr6.1:9829986-9830005 | MS.gene87897:intron | 25.0% |
| !!! | GTTTCACTTTTGATTTCAAT+TGG | - | chr6.1:9829815-9829834 | MS.gene87897:CDS | 25.0% |
| !!! | TCAATATTTTGATGGGTTTA+GGG | - | chr6.1:9829993-9830012 | MS.gene87897:intron | 25.0% |
| !!! | TCCTATGTTCAATATTTTGA+TGG | - | chr6.1:9829985-9830004 | MS.gene87897:intron | 25.0% |
| !!! | TTCAATATTTTGATGGGTTT+AGG | - | chr6.1:9829992-9830011 | MS.gene87897:intron | 25.0% |
| !!! | TTTTTAGTACCTATTACTTG+TGG | - | chr6.1:9829456-9829475 | MS.gene87897:CDS | 25.0% |
| ATCATTATCAGTATCATCGT+CGG | + | chr6.1:9829381-9829400 | None:intergenic | 30.0% | |
| ATGGACTTATATAATAGCTG+AGG | - | chr6.1:9829787-9829806 | MS.gene87897:CDS | 30.0% | |
| CAATACACAAATGGAAAATG+TGG | - | chr6.1:9829616-9829635 | MS.gene87897:CDS | 30.0% | |
| CATTCTGATTGTAGATCAAA+AGG | - | chr6.1:9828753-9828772 | MS.gene87897:CDS | 30.0% | |
| CCCATCAAAATATTGAACAT+AGG | + | chr6.1:9829989-9830008 | None:intergenic | 30.0% | |
| CTTCTTATCATCATTTCCAT+TGG | - | chr6.1:9829191-9829210 | MS.gene87897:CDS | 30.0% | |
| GAAGAATGAACAAAGAGAAA+AGG | + | chr6.1:9829175-9829194 | None:intergenic | 30.0% | |
| TAGAAACTTCCACAAGTAAT+AGG | + | chr6.1:9829468-9829487 | None:intergenic | 30.0% | |
| TGTGATGATTTAGTTGAATC+TGG | - | chr6.1:9829335-9829354 | MS.gene87897:CDS | 30.0% | |
| ! | AGTTTTCTTGGTAAACAAAG+TGG | + | chr6.1:9829506-9829525 | None:intergenic | 30.0% |
| ! | ATGAGGCTTGATAAGTTTTT+AGG | - | chr6.1:9830151-9830170 | MS.gene87897:intron | 30.0% |
| ! | ATTTTATCTTTTAGCCGACA+CGG | - | chr6.1:9828866-9828885 | MS.gene87897:CDS | 30.0% |
| ! | GTGTTAGTCCTTCAATTTTA+GGG | - | chr6.1:9829849-9829868 | MS.gene87897:CDS | 30.0% |
| ! | TCATTGATTGGAATTGTCTT+TGG | - | chr6.1:9829674-9829693 | MS.gene87897:CDS | 30.0% |
| ! | TCGGTTTAAATAGCATTTTG+GGG | - | chr6.1:9829042-9829061 | MS.gene87897:CDS | 30.0% |
| !! | GTCGGTTTAAATAGCATTTT+GGG | - | chr6.1:9829041-9829060 | MS.gene87897:CDS | 30.0% |
| AACTTCGTAGATGAAATGTG+TGG | + | chr6.1:9829285-9829304 | None:intergenic | 35.0% | |
| ACAACACTAGCAAAGAAATC+AGG | + | chr6.1:9828993-9829012 | None:intergenic | 35.0% | |
| ACATTACTCTCTCTAGGTAA+TGG | - | chr6.1:9828963-9828982 | MS.gene87897:CDS | 35.0% | |
| ACCAAGAAAACTCACTATAC+CGG | - | chr6.1:9829514-9829533 | MS.gene87897:CDS | 35.0% | |
| AGATGTTAGACAAACCTTCT+AGG | + | chr6.1:9828914-9828933 | None:intergenic | 35.0% | |
| CAAGAAGATGTTTGTTTCCT+TGG | - | chr6.1:9829735-9829754 | MS.gene87897:CDS | 35.0% | |
| CAAGAATTGGTGAATTTCCA+AGG | + | chr6.1:9828812-9828831 | None:intergenic | 35.0% | |
| CAAGGAAACAAACATCTTCT+TGG | + | chr6.1:9829737-9829756 | None:intergenic | 35.0% | |
| CATCTACGAAGTTGACAAAA+AGG | - | chr6.1:9829292-9829311 | MS.gene87897:CDS | 35.0% | |
| CTTGGAAATTCACCAATTCT+TGG | - | chr6.1:9828810-9828829 | MS.gene87897:CDS | 35.0% | |
| GAATCTGGCATACCATTATT+AGG | - | chr6.1:9829350-9829369 | MS.gene87897:CDS | 35.0% | |
| GATGTTAGACAAACCTTCTA+GGG | + | chr6.1:9828913-9828932 | None:intergenic | 35.0% | |
| TATGCAACTAAGCTACTCTT+TGG | + | chr6.1:9829644-9829663 | None:intergenic | 35.0% | |
| TCTTTCACGAGTTCAAACAA+TGG | - | chr6.1:9829014-9829033 | MS.gene87897:CDS | 35.0% | |
| ! | AAAGTAATTTGAAGCCGTGT+CGG | + | chr6.1:9828883-9828902 | None:intergenic | 35.0% |
| ! | CAGTTTTCTTCATTCACAAC+CGG | + | chr6.1:9829536-9829555 | None:intergenic | 35.0% |
| ! | CGGTTTAAATAGCATTTTGG+GGG | - | chr6.1:9829043-9829062 | MS.gene87897:CDS | 35.0% |
| ! | CTAGGTGATTTGATAGCAAA+TGG | - | chr6.1:9829899-9829918 | MS.gene87897:CDS | 35.0% |
| ! | CTTGTTTATAAGGTTAGCCA+TGG | - | chr6.1:9830204-9830223 | MS.gene87897:CDS | 35.0% |
| ! | GATTTTCAATGAGTGTGACA+TGG | - | chr6.1:9829768-9829787 | MS.gene87897:CDS | 35.0% |
| ! | GGTGTTAGTCCTTCAATTTT+AGG | - | chr6.1:9829848-9829867 | MS.gene87897:CDS | 35.0% |
| ! | GGTTTAAATAGCATTTTGGG+GGG | - | chr6.1:9829044-9829063 | MS.gene87897:CDS | 35.0% |
| ! | TCCTAAGGATAGTTCACTTT+TGG | - | chr6.1:9830066-9830085 | MS.gene87897:intron | 35.0% |
| ! | TGGAATTGTCTTTGGAAACA+TGG | - | chr6.1:9829682-9829701 | MS.gene87897:CDS | 35.0% |
| ! | TTTGATAGCAAATGGTGCTA+TGG | - | chr6.1:9829907-9829926 | MS.gene87897:intron | 35.0% |
| ! | TTTTGTATCCACAGCTGTTT+TGG | - | chr6.1:9829073-9829092 | MS.gene87897:CDS | 35.0% |
| !! | AATGGTGCTATGGCTAAAAA+TGG | - | chr6.1:9829917-9829936 | MS.gene87897:intron | 35.0% |
| !! | CCTAAGGATAGTTCACTTTT+GGG | - | chr6.1:9830067-9830086 | MS.gene87897:intron | 35.0% |
| !! | CTAAGGATAGTTCACTTTTG+GGG | - | chr6.1:9830068-9830087 | MS.gene87897:intron | 35.0% |
| !! | CTTGATAAGTTTTTAGGAGC+TGG | - | chr6.1:9830157-9830176 | MS.gene87897:intron | 35.0% |
| !! | GGTCGGTTTAAATAGCATTT+TGG | - | chr6.1:9829040-9829059 | MS.gene87897:CDS | 35.0% |
| !! | TTTGTATCCACAGCTGTTTT+GGG | - | chr6.1:9829074-9829093 | MS.gene87897:CDS | 35.0% |
| !!! | AATTTTAGGGCTAACCGTTT+TGG | - | chr6.1:9829862-9829881 | MS.gene87897:CDS | 35.0% |
| !!! | GGGGACAATATTGTTTTTGA+TGG | - | chr6.1:9830087-9830106 | MS.gene87897:intron | 35.0% |
| !!! | GTCACACACTACTTGTTTTA+TGG | - | chr6.1:9828832-9828851 | MS.gene87897:CDS | 35.0% |
| AATGTTACACCAGCTATGGT+TGG | + | chr6.1:9828948-9828967 | None:intergenic | 40.0% | |
| ACCTCTTGTTCTTTCAGCAT+GGG | - | chr6.1:9830018-9830037 | MS.gene87897:intron | 40.0% | |
| AGAATTTCCCCAAGCCAAAA+CGG | + | chr6.1:9829879-9829898 | None:intergenic | 40.0% | |
| AGTAGTGTGTGACCAAGAAT+TGG | + | chr6.1:9828825-9828844 | None:intergenic | 40.0% | |
| CCCAAAAGTGAACTATCCTT+AGG | + | chr6.1:9830070-9830089 | None:intergenic | 40.0% | |
| CGGTTGTGAATGAAGAAAAC+TGG | - | chr6.1:9829534-9829553 | MS.gene87897:CDS | 40.0% | |
| GAGTAATGTTACACCAGCTA+TGG | + | chr6.1:9828952-9828971 | None:intergenic | 40.0% | |
| GGAAACAAACATCTTCTTGG+TGG | + | chr6.1:9829734-9829753 | None:intergenic | 40.0% | |
| GGTGTAACATTACTCTCTCT+AGG | - | chr6.1:9828957-9828976 | MS.gene87897:CDS | 40.0% | |
| GTAACTGATATAACCGCGTA+TGG | + | chr6.1:9829566-9829585 | None:intergenic | 40.0% | |
| TACCTCTTGTTCTTTCAGCA+TGG | - | chr6.1:9830017-9830036 | MS.gene87897:intron | 40.0% | |
| TATGATTCCCAAAACAGCTG+TGG | + | chr6.1:9829084-9829103 | None:intergenic | 40.0% | |
| TCGTCGGCATAACCTAATAA+TGG | + | chr6.1:9829365-9829384 | None:intergenic | 40.0% | |
| TCTTTATGTTTGTGCCGTCT+CGG | - | chr6.1:9829259-9829278 | MS.gene87897:CDS | 40.0% | |
| ! | ACCGGTATAGTGAGTTTTCT+TGG | + | chr6.1:9829518-9829537 | None:intergenic | 40.0% |
| ! | ACGGTTAGCCCTAAAATTGA+AGG | + | chr6.1:9829860-9829879 | None:intergenic | 40.0% |
| ! | ATAAGGTTAGCCATGGCAAT+TGG | - | chr6.1:9830211-9830230 | MS.gene87897:CDS | 40.0% |
| ! | GCTAAAAATGGTGGTGTTGA+TGG | - | chr6.1:9829929-9829948 | MS.gene87897:intron | 40.0% |
| ! | TACTTTTGCACATCCCTAGA+AGG | - | chr6.1:9828897-9828916 | MS.gene87897:CDS | 40.0% |
| !! | ATTAAGAGCACCAATTGCCA+TGG | + | chr6.1:9830224-9830243 | None:intergenic | 40.0% |
| !! | TGCGAATAAAATCGGTGCTA+AGG | + | chr6.1:9829588-9829607 | None:intergenic | 40.0% |
| !!! | TTTTGATGGTAGGGGTACTT+TGG | - | chr6.1:9830101-9830120 | MS.gene87897:intron | 40.0% |
| AAACTGGTCGAAACCATACG+CGG | - | chr6.1:9829550-9829569 | MS.gene87897:CDS | 45.0% | |
| AGACTATCTCCAACCATAGC+TGG | - | chr6.1:9828936-9828955 | MS.gene87897:CDS | 45.0% | |
| CCTCTTGTTCTTTCAGCATG+GGG | - | chr6.1:9830019-9830038 | MS.gene87897:intron | 45.0% | |
| TGTTTGTTTCCTTGGCTAGC+TGG | - | chr6.1:9829743-9829762 | MS.gene87897:CDS | 45.0% | |
| ! | GGTGCTATGGCTAAAAATGG+TGG | - | chr6.1:9829920-9829939 | MS.gene87897:intron | 45.0% |
| !! | GCTGTTTCAGGTTGTTATGC+TGG | - | chr6.1:9829962-9829981 | MS.gene87897:intron | 45.0% |
| !! | GGTGCACAAATTGCTGTTTC+AGG | - | chr6.1:9829950-9829969 | MS.gene87897:intron | 45.0% |
| !! | TTGGCTTGGGGAAATTCTCT+AGG | - | chr6.1:9829881-9829900 | MS.gene87897:CDS | 45.0% |
| AGTTCAAACAATGGCGCGGT+CGG | - | chr6.1:9829023-9829042 | MS.gene87897:CDS | 50.0% | |
| CACGAGTTCAAACAATGGCG+CGG | - | chr6.1:9829019-9829038 | MS.gene87897:CDS | 50.0% | |
| CCCCATGCTGAAAGAACAAG+AGG | + | chr6.1:9830022-9830041 | None:intergenic | 50.0% | |
| GAAAATCCACCAGCTAGCCA+AGG | + | chr6.1:9829755-9829774 | None:intergenic | 50.0% | |
| GATGAAATGTGTGGCCGAGA+CGG | + | chr6.1:9829276-9829295 | None:intergenic | 50.0% | |
| ! | TTGTTTCCTTGGCTAGCTGG+TGG | - | chr6.1:9829746-9829765 | MS.gene87897:CDS | 50.0% |
| !!! | AGGGCTAACCGTTTTGGCTT+GGG | - | chr6.1:9829868-9829887 | MS.gene87897:CDS | 50.0% |
| !!! | TAGGGCTAACCGTTTTGGCT+TGG | - | chr6.1:9829867-9829886 | MS.gene87897:CDS | 50.0% |
| !!! | GGGCTAACCGTTTTGGCTTG+GGG | - | chr6.1:9829869-9829888 | MS.gene87897:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 9828658 | 9830246 | 9828658 | ID=MS.gene87897 |
| chr6.1 | mRNA | 9828658 | 9830246 | 9828658 | ID=MS.gene87897.t1;Parent=MS.gene87897 |
| chr6.1 | exon | 9830171 | 9830246 | 9830171 | ID=MS.gene87897.t1.exon1;Parent=MS.gene87897.t1 |
| chr6.1 | CDS | 9830171 | 9830246 | 9830171 | ID=cds.MS.gene87897.t1;Parent=MS.gene87897.t1 |
| chr6.1 | exon | 9828658 | 9829925 | 9828658 | ID=MS.gene87897.t1.exon2;Parent=MS.gene87897.t1 |
| chr6.1 | CDS | 9828658 | 9829925 | 9828658 | ID=cds.MS.gene87897.t1;Parent=MS.gene87897.t1 |
| Gene Sequence |
| Protein sequence |
