Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88577.t1 | XP_003589717.2 | 97.1 | 414 | 12 | 0 | 1 | 414 | 64 | 477 | 2.50E-227 | 797.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88577.t1 | Q9FMX6 | 53.3 | 422 | 175 | 7 | 3 | 412 | 48 | 459 | 3.4e-116 | 419.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88577.t1 | G7IBD4 | 97.1 | 414 | 12 | 0 | 1 | 414 | 46 | 459 | 1.8e-227 | 797.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene88577 | 0.827247 | 1.74E-54 | -1.69E-46 |
| MS.gene050133 | MS.gene88577 | -0.837387 | 5.36E-57 | -1.69E-46 |
| MS.gene050315 | MS.gene88577 | 0.805236 | 1.47E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene88577 | 0.801508 | 8.71E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene88577 | 0.830994 | 2.15E-55 | -1.69E-46 |
| MS.gene050426 | MS.gene88577 | -0.857665 | 1.40E-62 | -1.69E-46 |
| MS.gene050529 | MS.gene88577 | 0.804366 | 2.24E-49 | -1.69E-46 |
| MS.gene051171 | MS.gene88577 | 0.860691 | 1.73E-63 | -1.69E-46 |
| MS.gene051208 | MS.gene88577 | 0.864875 | 8.88E-65 | -1.69E-46 |
| MS.gene051240 | MS.gene88577 | 0.813327 | 2.71E-51 | -1.69E-46 |
| MS.gene051242 | MS.gene88577 | 0.852663 | 3.98E-61 | -1.69E-46 |
| MS.gene051244 | MS.gene88577 | 0.835951 | 1.24E-56 | -1.69E-46 |
| MS.gene051525 | MS.gene88577 | 0.829014 | 6.52E-55 | -1.69E-46 |
| MS.gene051552 | MS.gene88577 | -0.800109 | 1.68E-48 | -1.69E-46 |
| MS.gene051582 | MS.gene88577 | 0.822695 | 2.06E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene88577 | -0.836577 | 8.63E-57 | -1.69E-46 |
| MS.gene052134 | MS.gene88577 | 0.862992 | 3.42E-64 | -1.69E-46 |
| MS.gene052135 | MS.gene88577 | 0.854925 | 8.89E-62 | -1.69E-46 |
| MS.gene052589 | MS.gene88577 | 0.866271 | 3.22E-65 | -1.69E-46 |
| MS.gene052590 | MS.gene88577 | 0.84138 | 4.92E-58 | -1.69E-46 |
| MS.gene052758 | MS.gene88577 | 0.803424 | 3.51E-49 | -1.69E-46 |
| MS.gene053330 | MS.gene88577 | 0.926255 | 6.03E-91 | -1.69E-46 |
| MS.gene053971 | MS.gene88577 | 0.870248 | 1.68E-66 | -1.69E-46 |
| MS.gene054102 | MS.gene88577 | 0.883662 | 3.71E-71 | -1.69E-46 |
| MS.gene054110 | MS.gene88577 | 0.866696 | 2.36E-65 | -1.69E-46 |
| MS.gene05413 | MS.gene88577 | 0.821945 | 3.08E-53 | -1.69E-46 |
| MS.gene054719 | MS.gene88577 | 0.856046 | 4.19E-62 | -1.69E-46 |
| MS.gene055217 | MS.gene88577 | 0.813128 | 2.99E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene88577 | 0.88131 | 2.67E-70 | -1.69E-46 |
| MS.gene055539 | MS.gene88577 | 0.811884 | 5.60E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene88577 | 0.870285 | 1.64E-66 | -1.69E-46 |
| MS.gene05556 | MS.gene88577 | 0.813233 | 2.84E-51 | -1.69E-46 |
| MS.gene056305 | MS.gene88577 | 0.859542 | 3.85E-63 | -1.69E-46 |
| MS.gene056351 | MS.gene88577 | 0.8438 | 1.12E-58 | -1.69E-46 |
| MS.gene056442 | MS.gene88577 | 0.834016 | 3.82E-56 | -1.69E-46 |
| MS.gene056451 | MS.gene88577 | 0.831609 | 1.51E-55 | -1.69E-46 |
| MS.gene056633 | MS.gene88577 | 0.939288 | 1.64E-99 | -1.69E-46 |
| MS.gene056664 | MS.gene88577 | 0.861748 | 8.25E-64 | -1.69E-46 |
| MS.gene056723 | MS.gene88577 | 0.816947 | 4.25E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene88577 | -0.814385 | 1.58E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene88577 | 0.800337 | 1.51E-48 | -1.69E-46 |
| MS.gene057196 | MS.gene88577 | 0.819575 | 1.08E-52 | -1.69E-46 |
| MS.gene057332 | MS.gene88577 | 0.800597 | 1.34E-48 | -1.69E-46 |
| MS.gene058142 | MS.gene88577 | 0.817551 | 3.11E-52 | -1.69E-46 |
| MS.gene058233 | MS.gene88577 | 0.843881 | 1.07E-58 | -1.69E-46 |
| MS.gene058276 | MS.gene88577 | 0.83498 | 2.19E-56 | -1.69E-46 |
| MS.gene058444 | MS.gene88577 | 0.809565 | 1.78E-50 | -1.69E-46 |
| MS.gene058743 | MS.gene88577 | 0.81027 | 1.25E-50 | -1.69E-46 |
| MS.gene058746 | MS.gene88577 | 0.923092 | 4.19E-89 | -1.69E-46 |
| MS.gene059011 | MS.gene88577 | 0.812762 | 3.60E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene88577 | 0.807782 | 4.27E-50 | -1.69E-46 |
| MS.gene059512 | MS.gene88577 | 0.877178 | 7.74E-69 | -1.69E-46 |
| MS.gene059683 | MS.gene88577 | 0.807233 | 5.59E-50 | -1.69E-46 |
| MS.gene060087 | MS.gene88577 | -0.821785 | 3.36E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene88577 | 0.830093 | 3.57E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene88577 | -0.807595 | 4.68E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88577.t1 | MTR_1g038430 | 97.101 | 414 | 12 | 0 | 1 | 414 | 46 | 459 | 0.0 | 843 |
| MS.gene88577.t1 | MTR_2g083920 | 33.659 | 205 | 125 | 4 | 5 | 207 | 70 | 265 | 4.44e-30 | 119 |
| MS.gene88577.t1 | MTR_2g083920 | 33.014 | 209 | 129 | 4 | 5 | 211 | 70 | 269 | 1.45e-29 | 116 |
| MS.gene88577.t1 | MTR_4g080350 | 35.450 | 189 | 108 | 5 | 5 | 190 | 72 | 249 | 3.74e-28 | 114 |
| MS.gene88577.t1 | MTR_2g083920 | 30.493 | 223 | 136 | 5 | 30 | 250 | 2 | 207 | 1.26e-25 | 104 |
| MS.gene88577.t1 | MTR_1g038470 | 51.807 | 83 | 32 | 2 | 76 | 155 | 2 | 79 | 7.88e-17 | 79.0 |
| MS.gene88577.t1 | MTR_1g038510 | 81.081 | 37 | 7 | 0 | 116 | 152 | 102 | 138 | 3.04e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88577.t1 | AT5G23240 | 52.594 | 424 | 179 | 6 | 1 | 412 | 46 | 459 | 9.15e-154 | 443 |
| MS.gene88577.t1 | AT2G42750 | 32.195 | 205 | 128 | 4 | 5 | 207 | 76 | 271 | 3.44e-28 | 114 |
Find 85 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGGATGAATGGAATTTA+TGG | 0.158588 | 1.4:+23219353 | None:intergenic |
| CTGACATTCTTGATTCTCTT+TGG | 0.194662 | 1.4:+23219556 | None:intergenic |
| TTTGCTATAGAATCAGTTTA+TGG | 0.202414 | 1.4:-23220716 | MS.gene88577:CDS |
| TTTGACTTGTATGATCTTCT+AGG | 0.212676 | 1.4:-23221941 | MS.gene88577:CDS |
| CCTGATATTGCTGGGCCTTC+TGG | 0.219088 | 1.4:-23221851 | MS.gene88577:CDS |
| CAATTTCCAACTGGTTATAT+TGG | 0.229177 | 1.4:-23219515 | MS.gene88577:CDS |
| TCTCTTAGCTTACTAAGATT+TGG | 0.253936 | 1.4:+23219429 | None:intergenic |
| ACTGGCAATCCCCGTCTAAT+TGG | 0.257361 | 1.4:+23219189 | None:intergenic |
| CCATTCATCCTGAGGAATAT+TGG | 0.276497 | 1.4:-23219344 | MS.gene88577:CDS |
| TTGGTGCCAGTTGCACTATT+TGG | 0.284345 | 1.4:+23219489 | None:intergenic |
| GAGATCCAACCTTGCTGCTT+TGG | 0.303926 | 1.4:-23220382 | MS.gene88577:CDS |
| CCAGTGGTTACTTCATTGTT+TGG | 0.318448 | 1.4:-23219171 | MS.gene88577:CDS |
| CTCTTGGTTGCAATATATAT+TGG | 0.333927 | 1.4:-23219055 | MS.gene88577:CDS |
| TTGGGGAGGTTCTCTAGCTT+TGG | 0.348620 | 1.4:-23219091 | MS.gene88577:CDS |
| CCAGAAGGCCCAGCAATATC+AGG | 0.373287 | 1.4:+23221851 | None:intergenic |
| TGATGCTTATGCCATTCTTT+CGG | 0.378520 | 1.4:-23221804 | MS.gene88577:CDS |
| TGGGCCTTCTGGTCATGATA+TGG | 0.382338 | 1.4:-23221840 | MS.gene88577:CDS |
| TTCATTCACCTGAGAATACT+TGG | 0.395135 | 1.4:+23220224 | None:intergenic |
| TCAGGATGAATGGAATTTAT+GGG | 0.397759 | 1.4:+23219354 | None:intergenic |
| GCAAATGTAGCCTTCTCAAT+TGG | 0.398006 | 1.4:+23219270 | None:intergenic |
| AAATTAATTAACCTTATCAT+AGG | 0.400387 | 1.4:+23221763 | None:intergenic |
| CGATGTCATCCTGATATTGC+TGG | 0.405295 | 1.4:-23221860 | MS.gene88577:CDS |
| TGGAAATCGTTAACAGCTCT+TGG | 0.411043 | 1.4:-23219071 | MS.gene88577:CDS |
| AGTTGAGTTGAAAGAGCATT+GGG | 0.412413 | 1.4:-23219109 | MS.gene88577:CDS |
| GAAGACCATTGTATTCAGTT+TGG | 0.420412 | 1.4:-23220829 | MS.gene88577:CDS |
| ACATTCTTGATTCTCTTTGG+AGG | 0.428803 | 1.4:+23219559 | None:intergenic |
| ACAGAATTCAAAGGCTTCAC+TGG | 0.429274 | 1.4:-23220851 | MS.gene88577:CDS |
| GAAGGAAGAACAACAGTTGA+TGG | 0.432900 | 1.4:+23219318 | None:intergenic |
| TCGATTTCTATTTCCAATGT+TGG | 0.441877 | 1.4:+23218984 | None:intergenic |
| GGTTACTTCATTGTTTGGTA+TGG | 0.442830 | 1.4:-23219166 | MS.gene88577:CDS |
| CCAATATTCCTCAGGATGAA+TGG | 0.445444 | 1.4:+23219344 | None:intergenic |
| TGGCAACCAAATAGTGCAAC+TGG | 0.446692 | 1.4:-23219495 | MS.gene88577:CDS |
| TCATAGGCAAAACGAGCAAA+TGG | 0.458278 | 1.4:+23221779 | None:intergenic |
| TGAAAATAGTCCAATTAGAC+GGG | 0.464684 | 1.4:-23219199 | MS.gene88577:CDS |
| CAATAAGATCAATTTCCAAC+TGG | 0.475149 | 1.4:-23219524 | MS.gene88577:CDS |
| GCAGCTACATGGTATGTGAT+TGG | 0.477504 | 1.4:-23219030 | MS.gene88577:CDS |
| TTGAATTGCCTCATCAATTG+TGG | 0.477513 | 1.4:+23220655 | None:intergenic |
| GAGAAGGCTACATTTGCTAA+AGG | 0.480645 | 1.4:-23219264 | MS.gene88577:CDS |
| AAGGGTTGCTGTAGAATTTG+TGG | 0.483426 | 1.4:-23219007 | MS.gene88577:CDS |
| TGAATTGCCTCATCAATTGT+GGG | 0.486266 | 1.4:+23220656 | None:intergenic |
| AGCTTACTAAGATTTGGATC+AGG | 0.486859 | 1.4:+23219435 | None:intergenic |
| AGCAAATGGATCCGAAAGAA+TGG | 0.495584 | 1.4:+23221793 | None:intergenic |
| TGTTTGGTATGGCTGCAGTT+AGG | 0.496837 | 1.4:-23219155 | MS.gene88577:CDS |
| GAACTCCAAAGCAGCAAGGT+TGG | 0.505248 | 1.4:+23220377 | None:intergenic |
| CTCAAACATATTTGTAGATG+TGG | 0.509300 | 1.4:-23220289 | MS.gene88577:CDS |
| CAGTTGAGTTGAAAGAGCAT+TGG | 0.510120 | 1.4:-23219110 | MS.gene88577:CDS |
| ATGAAAATAGTCCAATTAGA+CGG | 0.517165 | 1.4:-23219200 | MS.gene88577:CDS |
| GTAGTAGTACTAGTTGAAGA+AGG | 0.518499 | 1.4:+23219300 | None:intergenic |
| GTTGATGAAATAAAATGTGT+TGG | 0.520242 | 1.4:-23220773 | MS.gene88577:CDS |
| AGCAAGGGTTGTTTCTCAGT+GGG | 0.533941 | 1.4:-23220690 | MS.gene88577:CDS |
| AAAAGCTACCAAGTATTCTC+AGG | 0.534346 | 1.4:-23220232 | MS.gene88577:intron |
| GATGGAGTCCAATATTCCTC+AGG | 0.534720 | 1.4:+23219336 | None:intergenic |
| CTACATGGTATGTGATTGGA+AGG | 0.538431 | 1.4:-23219026 | MS.gene88577:CDS |
| GTAGGTGCAAGTCATACAGC+AGG | 0.546276 | 1.4:-23220321 | MS.gene88577:CDS |
| GTAGAATTTGTGGCCAACAT+TGG | 0.550242 | 1.4:-23218997 | MS.gene88577:CDS |
| CAGGATGAATGGAATTTATG+GGG | 0.557366 | 1.4:+23219355 | None:intergenic |
| ACTTACGAAATGCAGTTGAC+AGG | 0.558378 | 1.4:+23220626 | None:intergenic |
| GATGTCATCCTGATATTGCT+GGG | 0.560113 | 1.4:-23221859 | MS.gene88577:CDS |
| ATCAGTTTATGGAAGAGCAA+GGG | 0.573227 | 1.4:-23220705 | MS.gene88577:CDS |
| AATCAGTTTATGGAAGAGCA+AGG | 0.576566 | 1.4:-23220706 | MS.gene88577:CDS |
| ATATATTGGTAGCAGCTACA+TGG | 0.581246 | 1.4:-23219041 | MS.gene88577:CDS |
| CCATTGTATTCAGTTTGGTG+TGG | 0.590749 | 1.4:-23220824 | MS.gene88577:CDS |
| ACATATTTGTAGATGTGGAG+AGG | 0.591397 | 1.4:-23220284 | MS.gene88577:CDS |
| CCACGTGGCAATGTAAGAGT+AGG | 0.594070 | 1.4:-23220339 | MS.gene88577:CDS |
| GCAGTTAGGTTACATGAAGT+AGG | 0.596129 | 1.4:-23219141 | MS.gene88577:CDS |
| GCAAAGATCACAGAATTCAA+AGG | 0.599426 | 1.4:-23220860 | MS.gene88577:CDS |
| TACTACTGCACCAATTGAGA+AGG | 0.603819 | 1.4:-23219280 | MS.gene88577:CDS |
| CATAAATTCCATTCATCCTG+AGG | 0.607786 | 1.4:-23219352 | MS.gene88577:CDS |
| CCAAACAATGAAGTAACCAC+TGG | 0.612811 | 1.4:+23219171 | None:intergenic |
| AATTAGACGGGGATTGCCAG+TGG | 0.621632 | 1.4:-23219187 | MS.gene88577:CDS |
| TGGTTGCCAATATAACCAGT+TGG | 0.622071 | 1.4:+23219509 | None:intergenic |
| GAGCAAGGGTTGTTTCTCAG+TGG | 0.633189 | 1.4:-23220691 | MS.gene88577:CDS |
| AGGATGAATGGAATTTATGG+GGG | 0.638502 | 1.4:+23219356 | None:intergenic |
| GAGTTGAAAGAGCATTGGGG+AGG | 0.639356 | 1.4:-23219105 | MS.gene88577:CDS |
| TTCTGAACCCACAATTGATG+AGG | 0.640325 | 1.4:-23220663 | MS.gene88577:CDS |
| ATAGCCATATCATGACCAGA+AGG | 0.651061 | 1.4:+23221836 | None:intergenic |
| TCAAGAACTCCAAAGCAGCA+AGG | 0.655263 | 1.4:+23220373 | None:intergenic |
| CCACACCAAACTGAATACAA+TGG | 0.683154 | 1.4:+23220824 | None:intergenic |
| ATACAAGTCAAAATCCAACA+TGG | 0.696805 | 1.4:+23221952 | None:intergenic |
| GTTGAGTTGAAAGAGCATTG+GGG | 0.697316 | 1.4:-23219108 | MS.gene88577:CDS |
| TGATCAGTCACAGATCAAGA+CGG | 0.698326 | 1.4:-23221903 | MS.gene88577:CDS |
| GAAAATAGTCCAATTAGACG+GGG | 0.710030 | 1.4:-23219198 | MS.gene88577:CDS |
| TTGATGTCGAAGCAGCCACG+TGG | 0.734249 | 1.4:-23220354 | MS.gene88577:CDS |
| CCTACTCTTACATTGCCACG+TGG | 0.735405 | 1.4:+23220339 | None:intergenic |
| TACATGGTATGTGATTGGAA+GGG | 0.767981 | 1.4:-23219025 | MS.gene88577:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATAAACTAAAAAGAA+AGG | + | chr1.4:23219203-23219222 | None:intergenic | 10.0% |
| !! | TTTATAACAAAATAACATTA+TGG | - | chr1.4:23219816-23219835 | MS.gene88577:intron | 10.0% |
| !!! | TTTTTAGTTTATTATAATTG+TGG | - | chr1.4:23219206-23219225 | MS.gene88577:CDS | 10.0% |
| !! | AAAACAAATAAGAATTCAAT+TGG | + | chr1.4:23220007-23220026 | None:intergenic | 15.0% |
| !! | AAATTAATTAACCTTATCAT+AGG | + | chr1.4:23219171-23219190 | None:intergenic | 15.0% |
| !! | AATTATTCAATGAATATACA+AGG | + | chr1.4:23220464-23220483 | None:intergenic | 15.0% |
| !!! | ATTGAATTCTTATTTGTTTT+TGG | - | chr1.4:23220007-23220026 | MS.gene88577:intron | 15.0% |
| !!! | CAATTTATAGTTCTAAATTA+AGG | - | chr1.4:23219288-23219307 | MS.gene88577:CDS | 15.0% |
| !!! | GTTTCTATTTTAAGATTATA+AGG | - | chr1.4:23219622-23219641 | MS.gene88577:intron | 15.0% |
| !! | TATGAAGACTTATCATATAA+GGG | - | chr1.4:23221056-23221075 | MS.gene88577:intron | 20.0% |
| !! | TTGTAACTAAGAATTAAGAT+TGG | - | chr1.4:23219960-23219979 | MS.gene88577:intron | 20.0% |
| !! | TTTGTATAATGATATCTGAT+TGG | + | chr1.4:23219793-23219812 | None:intergenic | 20.0% |
| !!! | ATTCTTATTTGTTTTTGGTT+TGG | - | chr1.4:23220012-23220031 | MS.gene88577:intron | 20.0% |
| !!! | ATTGATTTTAGTATGTTTGA+AGG | - | chr1.4:23220779-23220798 | MS.gene88577:CDS | 20.0% |
| ! | AAAGTGAGTTTATAGTGAAA+TGG | + | chr1.4:23220957-23220976 | None:intergenic | 25.0% |
| ! | AATTTATCCTAAAGAGCTTA+TGG | - | chr1.4:23221154-23221173 | MS.gene88577:intron | 25.0% |
| ! | ACAAATAAGAATTCAATTGG+AGG | + | chr1.4:23220004-23220023 | None:intergenic | 25.0% |
| ! | ATGAAAATAGTCCAATTAGA+CGG | - | chr1.4:23221731-23221750 | MS.gene88577:intron | 25.0% |
| ! | ATTATTTCCATAAGCTCTTT+AGG | + | chr1.4:23221164-23221183 | None:intergenic | 25.0% |
| ! | CAGTAAAATACAAGTAAACA+CGG | + | chr1.4:23219513-23219532 | None:intergenic | 25.0% |
| ! | GTATGAAGACTTATCATATA+AGG | - | chr1.4:23221055-23221074 | MS.gene88577:intron | 25.0% |
| ! | TAATTCACAGTGAAATAATG+AGG | + | chr1.4:23221322-23221341 | None:intergenic | 25.0% |
| ! | TGTATAAACTATTCTGTACT+TGG | - | chr1.4:23220341-23220360 | MS.gene88577:CDS | 25.0% |
| ! | TTCATATAAGCTATAAACTG+TGG | - | chr1.4:23221127-23221146 | MS.gene88577:intron | 25.0% |
| !! | ACTTAACAAAAGCACAAATT+TGG | + | chr1.4:23219584-23219603 | None:intergenic | 25.0% |
| !! | GTTGATGAAATAAAATGTGT+TGG | - | chr1.4:23220158-23220177 | MS.gene88577:intron | 25.0% |
| !! | TTAAGTTGTTTATCGAACAA+AGG | + | chr1.4:23221022-23221041 | None:intergenic | 25.0% |
| !! | TTTGCTATAGAATCAGTTTA+TGG | - | chr1.4:23220215-23220234 | MS.gene88577:intron | 25.0% |
| !!! | GAATTTTTGGATTCACTTTT+TGG | - | chr1.4:23220727-23220746 | MS.gene88577:CDS | 25.0% |
| !!! | GATTTTAGCAAAATCAATTC+TGG | + | chr1.4:23219435-23219454 | None:intergenic | 25.0% |
| AAAACACATTCGAACTTTGA+AGG | + | chr1.4:23220873-23220892 | None:intergenic | 30.0% | |
| AAACATTTGTGAGACTGTAT+GGG | + | chr1.4:23221236-23221255 | None:intergenic | 30.0% | |
| CAATAAGATCAATTTCCAAC+TGG | - | chr1.4:23221407-23221426 | MS.gene88577:intron | 30.0% | |
| CAATTTCCAACTGGTTATAT+TGG | - | chr1.4:23221416-23221435 | MS.gene88577:intron | 30.0% | |
| CTCAAACATATTTGTAGATG+TGG | - | chr1.4:23220642-23220661 | MS.gene88577:CDS | 30.0% | |
| CTCTTGGTTGCAATATATAT+TGG | - | chr1.4:23221876-23221895 | MS.gene88577:CDS | 30.0% | |
| GCTTATAGTATGACAAAATG+TGG | - | chr1.4:23220037-23220056 | MS.gene88577:intron | 30.0% | |
| TAAACATTTGTGAGACTGTA+TGG | + | chr1.4:23221237-23221256 | None:intergenic | 30.0% | |
| TAACTCAATCACTTTCACAT+TGG | - | chr1.4:23220977-23220996 | MS.gene88577:intron | 30.0% | |
| TATTGTTCAACTCACTTTCA+CGG | - | chr1.4:23220906-23220925 | MS.gene88577:intron | 30.0% | |
| TCAAGTTAGAATCAACTCTA+CGG | + | chr1.4:23220827-23220846 | None:intergenic | 30.0% | |
| TCAGGATGAATGGAATTTAT+GGG | + | chr1.4:23221580-23221599 | None:intergenic | 30.0% | |
| TCGATTTCTATTTCCAATGT+TGG | + | chr1.4:23221950-23221969 | None:intergenic | 30.0% | |
| TCTATTACTCATGTCATGTA+TGG | - | chr1.4:23219246-23219265 | MS.gene88577:CDS | 30.0% | |
| TCTCTTAGCTTACTAAGATT+TGG | + | chr1.4:23221505-23221524 | None:intergenic | 30.0% | |
| TGAAAATAGTCCAATTAGAC+GGG | - | chr1.4:23221732-23221751 | MS.gene88577:intron | 30.0% | |
| TGAAGGCAAGAGATTAAAAT+TGG | - | chr1.4:23220796-23220815 | MS.gene88577:CDS | 30.0% | |
| ! | ACAAAAGAAGATCTCTTTTC+AGG | - | chr1.4:23221342-23221361 | MS.gene88577:intron | 30.0% |
| ! | CAGATTAAAGCTGTAGTTTT+AGG | - | chr1.4:23219724-23219743 | MS.gene88577:intron | 30.0% |
| ! | GATCTCATAGGATTTTTGTA+TGG | - | chr1.4:23219467-23219486 | MS.gene88577:CDS | 30.0% |
| ! | TTCTCAGGTGAATGAATTTT+TGG | - | chr1.4:23220714-23220733 | MS.gene88577:CDS | 30.0% |
| !! | AATTCGTGCTTTGAAGATTA+AGG | + | chr1.4:23221299-23221318 | None:intergenic | 30.0% |
| !! | ATTCGTGCTTTGAAGATTAA+GGG | + | chr1.4:23221298-23221317 | None:intergenic | 30.0% |
| !! | ATTTATGGGGGTTTTATGTT+TGG | + | chr1.4:23221566-23221585 | None:intergenic | 30.0% |
| !! | TCAGATGGATTGATTTAACA+AGG | - | chr1.4:23219875-23219894 | MS.gene88577:intron | 30.0% |
| !! | TTTGACTTGTATGATCTTCT+AGG | - | chr1.4:23218990-23219009 | MS.gene88577:CDS | 30.0% |
| !!! | GTTTTAAAATTCTATGTCGC+TGG | - | chr1.4:23219342-23219361 | MS.gene88577:CDS | 30.0% |
| AAAAGCTACCAAGTATTCTC+AGG | - | chr1.4:23220699-23220718 | MS.gene88577:CDS | 35.0% | |
| AAAGGCTAAGCATAAAAGAG+TGG | + | chr1.4:23221004-23221023 | None:intergenic | 35.0% | |
| AAGGTATGCAACTTCAATTG+CGG | - | chr1.4:23219307-23219326 | MS.gene88577:CDS | 35.0% | |
| AATCAGTTTATGGAAGAGCA+AGG | - | chr1.4:23220225-23220244 | MS.gene88577:intron | 35.0% | |
| ACATATTTGTAGATGTGGAG+AGG | - | chr1.4:23220647-23220666 | MS.gene88577:CDS | 35.0% | |
| ACATTCTTGATTCTCTTTGG+AGG | + | chr1.4:23221375-23221394 | None:intergenic | 35.0% | |
| AGCTTACTAAGATTTGGATC+AGG | + | chr1.4:23221499-23221518 | None:intergenic | 35.0% | |
| AGGATGAATGGAATTTATGG+GGG | + | chr1.4:23221578-23221597 | None:intergenic | 35.0% | |
| ATCAGTTTATGGAAGAGCAA+GGG | - | chr1.4:23220226-23220245 | MS.gene88577:intron | 35.0% | |
| ATGACTCAAATCCAAGACAT+CGG | - | chr1.4:23219909-23219928 | MS.gene88577:intron | 35.0% | |
| CAAGTTAGAATCAACTCTAC+GGG | + | chr1.4:23220826-23220845 | None:intergenic | 35.0% | |
| CAGGATGAATGGAATTTATG+GGG | + | chr1.4:23221579-23221598 | None:intergenic | 35.0% | |
| CATAAATTCCATTCATCCTG+AGG | - | chr1.4:23221579-23221598 | MS.gene88577:intron | 35.0% | |
| CTCAGGATGAATGGAATTTA+TGG | + | chr1.4:23221581-23221600 | None:intergenic | 35.0% | |
| CTGACATTCTTGATTCTCTT+TGG | + | chr1.4:23221378-23221397 | None:intergenic | 35.0% | |
| CTGAGAGTTGCAATCAAATA+CGG | - | chr1.4:23220394-23220413 | MS.gene88577:CDS | 35.0% | |
| GAAAATAGTCCAATTAGACG+GGG | - | chr1.4:23221733-23221752 | MS.gene88577:intron | 35.0% | |
| GAAGACCATTGTATTCAGTT+TGG | - | chr1.4:23220102-23220121 | MS.gene88577:intron | 35.0% | |
| GCAAAGATCACAGAATTCAA+AGG | - | chr1.4:23220071-23220090 | MS.gene88577:intron | 35.0% | |
| GGTTACTTCATTGTTTGGTA+TGG | - | chr1.4:23221765-23221784 | MS.gene88577:intron | 35.0% | |
| GTAGTAGTACTAGTTGAAGA+AGG | + | chr1.4:23221634-23221653 | None:intergenic | 35.0% | |
| TACATGGTATGTGATTGGAA+GGG | - | chr1.4:23221906-23221925 | MS.gene88577:CDS | 35.0% | |
| TGAATTGCCTCATCAATTGT+GGG | + | chr1.4:23220278-23220297 | None:intergenic | 35.0% | |
| TGATGCTTATGCCATTCTTT+CGG | - | chr1.4:23219127-23219146 | MS.gene88577:CDS | 35.0% | |
| TGTAGAAGAGTCTATTCAGA+TGG | - | chr1.4:23219860-23219879 | MS.gene88577:intron | 35.0% | |
| TGTATGAGAGTAGTGTTAAG+AGG | - | chr1.4:23219676-23219695 | MS.gene88577:intron | 35.0% | |
| TTCATTCACCTGAGAATACT+TGG | + | chr1.4:23220710-23220729 | None:intergenic | 35.0% | |
| TTGAATTGCCTCATCAATTG+TGG | + | chr1.4:23220279-23220298 | None:intergenic | 35.0% | |
| ! | ATATATTGGTAGCAGCTACA+TGG | - | chr1.4:23221890-23221909 | MS.gene88577:CDS | 35.0% |
| ! | CAGCTAACAAAGCACATTTT+AGG | + | chr1.4:23220187-23220206 | None:intergenic | 35.0% |
| !! | AGTTGAGTTGAAAGAGCATT+GGG | - | chr1.4:23221822-23221841 | MS.gene88577:CDS | 35.0% |
| AAATCAATTCTGGACGCACA+AGG | + | chr1.4:23219425-23219444 | None:intergenic | 40.0% | |
| AAGGGTTGCTGTAGAATTTG+TGG | - | chr1.4:23221924-23221943 | MS.gene88577:CDS | 40.0% | |
| AATCAATTCTGGACGCACAA+GGG | + | chr1.4:23219424-23219443 | None:intergenic | 40.0% | |
| ACAGAATTCAAAGGCTTCAC+TGG | - | chr1.4:23220080-23220099 | MS.gene88577:intron | 40.0% | |
| ACTTACGAAATGCAGTTGAC+AGG | + | chr1.4:23220308-23220327 | None:intergenic | 40.0% | |
| AGCAAATGGATCCGAAAGAA+TGG | + | chr1.4:23219141-23219160 | None:intergenic | 40.0% | |
| AGTATGACAAAATGTGGTGC+AGG | - | chr1.4:23220043-23220062 | MS.gene88577:intron | 40.0% | |
| ATAGCCATATCATGACCAGA+AGG | + | chr1.4:23219098-23219117 | None:intergenic | 40.0% | |
| CCAAACAATGAAGTAACCAC+TGG | + | chr1.4:23221763-23221782 | None:intergenic | 40.0% | |
| CCAATATTCCTCAGGATGAA+TGG | + | chr1.4:23221590-23221609 | None:intergenic | 40.0% | |
| CCACACCAAACTGAATACAA+TGG | + | chr1.4:23220110-23220129 | None:intergenic | 40.0% | |
| CCAGTGGTTACTTCATTGTT+TGG | - | chr1.4:23221760-23221779 | MS.gene88577:intron | 40.0% | |
| CCATTCATCCTGAGGAATAT+TGG | - | chr1.4:23221587-23221606 | MS.gene88577:intron | 40.0% | |
| CTACATGGTATGTGATTGGA+AGG | - | chr1.4:23221905-23221924 | MS.gene88577:CDS | 40.0% | |
| GAAGGAAGAACAACAGTTGA+TGG | + | chr1.4:23221616-23221635 | None:intergenic | 40.0% | |
| GATGTCATCCTGATATTGCT+GGG | - | chr1.4:23219072-23219091 | MS.gene88577:CDS | 40.0% | |
| GCAAATGTAGCCTTCTCAAT+TGG | + | chr1.4:23221664-23221683 | None:intergenic | 40.0% | |
| GCAGTTAGGTTACATGAAGT+AGG | - | chr1.4:23221790-23221809 | MS.gene88577:CDS | 40.0% | |
| GTAGAATTTGTGGCCAACAT+TGG | - | chr1.4:23221934-23221953 | MS.gene88577:CDS | 40.0% | |
| GTGAGATTGTACGATCTCAT+AGG | - | chr1.4:23219455-23219474 | MS.gene88577:CDS | 40.0% | |
| TACTACTGCACCAATTGAGA+AGG | - | chr1.4:23221651-23221670 | MS.gene88577:intron | 40.0% | |
| TCATAGGCAAAACGAGCAAA+TGG | + | chr1.4:23219155-23219174 | None:intergenic | 40.0% | |
| TCATCTCTTAACCGATGTCT+TGG | + | chr1.4:23219923-23219942 | None:intergenic | 40.0% | |
| TGATCAGTCACAGATCAAGA+CGG | - | chr1.4:23219028-23219047 | MS.gene88577:CDS | 40.0% | |
| TGGAAATCGTTAACAGCTCT+TGG | - | chr1.4:23221860-23221879 | MS.gene88577:CDS | 40.0% | |
| TGGTTGCCAATATAACCAGT+TGG | + | chr1.4:23221425-23221444 | None:intergenic | 40.0% | |
| TTCTGAACCCACAATTGATG+AGG | - | chr1.4:23220268-23220287 | MS.gene88577:CDS | 40.0% | |
| ! | CCATTGTATTCAGTTTGGTG+TGG | - | chr1.4:23220107-23220126 | MS.gene88577:intron | 40.0% |
| ! | CGCAACTTTTGTCATGCTTT+TGG | + | chr1.4:23221464-23221483 | None:intergenic | 40.0% |
| ! | GAGAAGGCTACATTTGCTAA+AGG | - | chr1.4:23221667-23221686 | MS.gene88577:intron | 40.0% |
| ! | TGCTCGTTTTGCCTATGATA+AGG | - | chr1.4:23219157-23219176 | MS.gene88577:CDS | 40.0% |
| !! | CAGTTGAGTTGAAAGAGCAT+TGG | - | chr1.4:23221821-23221840 | MS.gene88577:CDS | 40.0% |
| !! | GTTGAGTTGAAAGAGCATTG+GGG | - | chr1.4:23221823-23221842 | MS.gene88577:CDS | 40.0% |
| !! | TTGAAGATTAAGGGCTGGTT+TGG | + | chr1.4:23221289-23221308 | None:intergenic | 40.0% |
| ATCAATTCTGGACGCACAAG+GGG | + | chr1.4:23219423-23219442 | None:intergenic | 45.0% | |
| CGATGTCATCCTGATATTGC+TGG | - | chr1.4:23219071-23219090 | MS.gene88577:CDS | 45.0% | |
| GATGGAGTCCAATATTCCTC+AGG | + | chr1.4:23221598-23221617 | None:intergenic | 45.0% | |
| GCAGCTACATGGTATGTGAT+TGG | - | chr1.4:23221901-23221920 | MS.gene88577:CDS | 45.0% | |
| TCAAGAACTCCAAAGCAGCA+AGG | + | chr1.4:23220561-23220580 | None:intergenic | 45.0% | |
| TGGCAACCAAATAGTGCAAC+TGG | - | chr1.4:23221436-23221455 | MS.gene88577:intron | 45.0% | |
| TGTCTATGCGACAGCAATTG+AGG | + | chr1.4:23220420-23220439 | None:intergenic | 45.0% | |
| TGTTTGGTATGGCTGCAGTT+AGG | - | chr1.4:23221776-23221795 | MS.gene88577:CDS | 45.0% | |
| ! | ATTCTATGTCGCTGGTGTCA+AGG | - | chr1.4:23219350-23219369 | MS.gene88577:CDS | 45.0% |
| !! | AGCAAGGGTTGTTTCTCAGT+GGG | - | chr1.4:23220241-23220260 | MS.gene88577:CDS | 45.0% |
| !! | GTGCTTTGAAGATTAAGGGC+TGG | + | chr1.4:23221294-23221313 | None:intergenic | 45.0% |
| !! | TTGGTGCCAGTTGCACTATT+TGG | + | chr1.4:23221445-23221464 | None:intergenic | 45.0% |
| AATTAGACGGGGATTGCCAG+TGG | - | chr1.4:23221744-23221763 | MS.gene88577:intron | 50.0% | |
| ACTGGCAATCCCCGTCTAAT+TGG | + | chr1.4:23221745-23221764 | None:intergenic | 50.0% | |
| CCACGTGGCAATGTAAGAGT+AGG | - | chr1.4:23220592-23220611 | MS.gene88577:intron | 50.0% | |
| CCTACTCTTACATTGCCACG+TGG | + | chr1.4:23220595-23220614 | None:intergenic | 50.0% | |
| GAACTCCAAAGCAGCAAGGT+TGG | + | chr1.4:23220557-23220576 | None:intergenic | 50.0% | |
| GTAGGTGCAAGTCATACAGC+AGG | - | chr1.4:23220610-23220629 | MS.gene88577:intron | 50.0% | |
| TGGGCCTTCTGGTCATGATA+TGG | - | chr1.4:23219091-23219110 | MS.gene88577:CDS | 50.0% | |
| ! | GAGATCCAACCTTGCTGCTT+TGG | - | chr1.4:23220549-23220568 | MS.gene88577:intron | 50.0% |
| ! | TTGGGGAGGTTCTCTAGCTT+TGG | - | chr1.4:23221840-23221859 | MS.gene88577:CDS | 50.0% |
| !! | GAGCAAGGGTTGTTTCTCAG+TGG | - | chr1.4:23220240-23220259 | MS.gene88577:CDS | 50.0% |
| !! | GAGTTGAAAGAGCATTGGGG+AGG | - | chr1.4:23221826-23221845 | MS.gene88577:CDS | 50.0% |
| CCAGAAGGCCCAGCAATATC+AGG | + | chr1.4:23219083-23219102 | None:intergenic | 55.0% | |
| CCTGATATTGCTGGGCCTTC+TGG | - | chr1.4:23219080-23219099 | MS.gene88577:CDS | 55.0% | |
| TTGATGTCGAAGCAGCCACG+TGG | - | chr1.4:23220577-23220596 | MS.gene88577:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 23218981 | 23221972 | 23218981 | ID=MS.gene88577 |
| chr1.4 | mRNA | 23218981 | 23221972 | 23218981 | ID=MS.gene88577.t1;Parent=MS.gene88577 |
| chr1.4 | exon | 23221775 | 23221972 | 23221775 | ID=MS.gene88577.t1.exon1;Parent=MS.gene88577.t1 |
| chr1.4 | CDS | 23221775 | 23221972 | 23221775 | ID=cds.MS.gene88577.t1;Parent=MS.gene88577.t1 |
| chr1.4 | exon | 23220632 | 23220888 | 23220632 | ID=MS.gene88577.t1.exon2;Parent=MS.gene88577.t1 |
| chr1.4 | CDS | 23220632 | 23220888 | 23220632 | ID=cds.MS.gene88577.t1;Parent=MS.gene88577.t1 |
| chr1.4 | exon | 23220233 | 23220413 | 23220233 | ID=MS.gene88577.t1.exon3;Parent=MS.gene88577.t1 |
| chr1.4 | CDS | 23220233 | 23220413 | 23220233 | ID=cds.MS.gene88577.t1;Parent=MS.gene88577.t1 |
| chr1.4 | exon | 23218981 | 23219589 | 23218981 | ID=MS.gene88577.t1.exon4;Parent=MS.gene88577.t1 |
| chr1.4 | CDS | 23218981 | 23219589 | 23218981 | ID=cds.MS.gene88577.t1;Parent=MS.gene88577.t1 |
| Gene Sequence |
| Protein sequence |
