Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89434.t1 | RHN66664.1 | 99 | 98 | 1 | 0 | 1 | 98 | 25 | 122 | 8.70E-46 | 192.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89434.t1 | Q06445 | 78.4 | 97 | 21 | 0 | 1 | 97 | 1 | 97 | 1.8e-36 | 152.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89434.t1 | I3S5L6 | 99.0 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 6.3e-46 | 192.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene89434 | 0.833841 | 4.23E-56 | -1.69E-46 |
| MS.gene049382 | MS.gene89434 | 0.800432 | 1.45E-48 | -1.69E-46 |
| MS.gene04984 | MS.gene89434 | 0.81067 | 1.03E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene89434 | 0.808713 | 2.71E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene89434 | -0.802069 | 6.68E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene89434 | -0.805171 | 1.52E-49 | -1.69E-46 |
| MS.gene050680 | MS.gene89434 | 0.813954 | 1.97E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene89434 | 0.849053 | 4.14E-60 | -1.69E-46 |
| MS.gene050763 | MS.gene89434 | 0.849825 | 2.52E-60 | -1.69E-46 |
| MS.gene050807 | MS.gene89434 | 0.802472 | 5.52E-49 | -1.69E-46 |
| MS.gene050826 | MS.gene89434 | 0.80233 | 5.91E-49 | -1.69E-46 |
| MS.gene050987 | MS.gene89434 | 0.828525 | 8.57E-55 | -1.69E-46 |
| MS.gene051243 | MS.gene89434 | 0.809362 | 1.97E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene89434 | 0.819514 | 1.12E-52 | -1.69E-46 |
| MS.gene051535 | MS.gene89434 | 0.825411 | 4.76E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene89434 | 0.837725 | 4.39E-57 | -1.69E-46 |
| MS.gene052302 | MS.gene89434 | 0.805319 | 1.41E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene89434 | -0.810197 | 1.30E-50 | -1.69E-46 |
| MS.gene052426 | MS.gene89434 | 0.824071 | 9.85E-54 | -1.69E-46 |
| MS.gene053188 | MS.gene89434 | 0.818667 | 1.74E-52 | -1.69E-46 |
| MS.gene053216 | MS.gene89434 | 0.842973 | 1.86E-58 | -1.69E-46 |
| MS.gene053494 | MS.gene89434 | 0.808796 | 2.60E-50 | -1.69E-46 |
| MS.gene053577 | MS.gene89434 | 0.808681 | 2.75E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene89434 | 0.860801 | 1.60E-63 | -1.69E-46 |
| MS.gene054537 | MS.gene89434 | 0.82419 | 9.23E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene89434 | 0.853252 | 2.70E-61 | -1.69E-46 |
| MS.gene05510 | MS.gene89434 | 0.83968 | 1.37E-57 | -1.69E-46 |
| MS.gene055441 | MS.gene89434 | 0.803867 | 2.84E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene89434 | 0.829478 | 5.03E-55 | -1.69E-46 |
| MS.gene056480 | MS.gene89434 | 0.821543 | 3.82E-53 | -1.69E-46 |
| MS.gene056760 | MS.gene89434 | 0.80957 | 1.77E-50 | -1.69E-46 |
| MS.gene056849 | MS.gene89434 | 0.830027 | 3.70E-55 | -1.69E-46 |
| MS.gene05761 | MS.gene89434 | 0.806836 | 6.78E-50 | -1.69E-46 |
| MS.gene05795 | MS.gene89434 | 0.814088 | 1.84E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene89434 | 0.800971 | 1.12E-48 | -1.69E-46 |
| MS.gene058146 | MS.gene89434 | 0.81019 | 1.30E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene89434 | 0.811148 | 8.09E-51 | -1.69E-46 |
| MS.gene058399 | MS.gene89434 | 0.80202 | 6.84E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene89434 | 0.806523 | 7.89E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene89434 | 0.82506 | 5.76E-54 | -1.69E-46 |
| MS.gene059161 | MS.gene89434 | 0.801827 | 7.49E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene89434 | 0.810779 | 9.73E-51 | -1.69E-46 |
| MS.gene060084 | MS.gene89434 | 0.853174 | 2.85E-61 | -1.69E-46 |
| MS.gene060297 | MS.gene89434 | 0.823884 | 1.09E-53 | -1.69E-46 |
| MS.gene060683 | MS.gene89434 | 0.828648 | 8.00E-55 | -1.69E-46 |
| MS.gene060685 | MS.gene89434 | 0.822036 | 2.94E-53 | -1.69E-46 |
| MS.gene060940 | MS.gene89434 | 0.806165 | 9.39E-50 | -1.69E-46 |
| MS.gene060943 | MS.gene89434 | 0.807969 | 3.90E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene89434 | 0.822982 | 1.77E-53 | -1.69E-46 |
| MS.gene061002 | MS.gene89434 | 0.800024 | 1.75E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89434.t1 | MTR_3g043750 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 6.61e-68 | 198 |
| MS.gene89434.t1 | MTR_5g088770 | 63.000 | 100 | 34 | 1 | 1 | 97 | 1 | 100 | 7.14e-40 | 128 |
| MS.gene89434.t1 | MTR_8g041410 | 63.265 | 98 | 35 | 1 | 1 | 97 | 38 | 135 | 8.24e-39 | 129 |
| MS.gene89434.t1 | MTR_3g451210 | 48.936 | 94 | 48 | 0 | 4 | 97 | 31 | 124 | 1.97e-30 | 105 |
| MS.gene89434.t1 | MTR_3g452280 | 48.936 | 94 | 48 | 0 | 4 | 97 | 31 | 124 | 1.97e-30 | 105 |
| MS.gene89434.t1 | MTR_4g133540 | 42.308 | 78 | 45 | 0 | 15 | 92 | 38 | 115 | 4.73e-16 | 68.2 |
| MS.gene89434.t1 | MTR_3g451850 | 46.250 | 80 | 40 | 2 | 20 | 97 | 78 | 156 | 3.16e-14 | 66.6 |
| MS.gene89434.t1 | MTR_0526s0020 | 37.179 | 78 | 49 | 0 | 18 | 95 | 27 | 104 | 5.00e-13 | 62.8 |
| MS.gene89434.t1 | MTR_0526s0020 | 44.186 | 86 | 42 | 3 | 17 | 97 | 100 | 184 | 6.15e-12 | 59.7 |
| MS.gene89434.t1 | MTR_2g026040 | 36.264 | 91 | 57 | 1 | 2 | 92 | 27 | 116 | 7.63e-13 | 59.7 |
| MS.gene89434.t1 | MTR_8g098380 | 36.709 | 79 | 50 | 0 | 8 | 86 | 62 | 140 | 4.02e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89434.t1 | AT3G12490 | 68.041 | 97 | 31 | 0 | 1 | 97 | 1 | 97 | 1.33e-44 | 142 |
| MS.gene89434.t1 | AT3G12490 | 68.041 | 97 | 31 | 0 | 1 | 97 | 34 | 130 | 1.68e-43 | 141 |
| MS.gene89434.t1 | AT2G40880 | 63.218 | 87 | 32 | 0 | 4 | 90 | 35 | 121 | 5.61e-38 | 124 |
| MS.gene89434.t1 | AT5G12140 | 56.044 | 91 | 40 | 0 | 4 | 94 | 10 | 100 | 3.63e-34 | 113 |
| MS.gene89434.t1 | AT5G05110 | 55.682 | 88 | 38 | 1 | 4 | 90 | 45 | 132 | 1.36e-27 | 100 |
| MS.gene89434.t1 | AT5G47550 | 34.444 | 90 | 57 | 2 | 2 | 90 | 26 | 114 | 4.89e-12 | 57.8 |
| MS.gene89434.t1 | AT4G16500 | 42.254 | 71 | 40 | 1 | 21 | 90 | 45 | 115 | 3.18e-11 | 55.8 |
| MS.gene89434.t1 | AT4G16500 | 42.254 | 71 | 40 | 1 | 21 | 90 | 45 | 115 | 3.18e-11 | 55.8 |
Find 18 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGAGTTCGCGATGTTTC+AGG | 0.215517 | 3.3:+31825646 | MS.gene89434:CDS |
| TGTTATGCAGAATGCACTTC+TGG | 0.324506 | 3.3:+31827075 | MS.gene89434:intron |
| AAAAGATGGAGTGAATAAAA+AGG | 0.356439 | 3.3:+31827168 | MS.gene89434:CDS |
| CATCGATCGCAAGACTGTTC+TGG | 0.359811 | 3.3:-31825672 | None:intergenic |
| CATACACCACATCACTTTAG+AGG | 0.393728 | 3.3:+31827144 | MS.gene89434:CDS |
| GGTTTATGAAGCCAAGGTTT+GGG | 0.416419 | 3.3:+31827189 | MS.gene89434:CDS |
| AGGTTTATGAAGCCAAGGTT+TGG | 0.435602 | 3.3:+31827188 | MS.gene89434:CDS |
| GCTAAAGAGCAAGTGGTTGC+TGG | 0.452937 | 3.3:+31827118 | MS.gene89434:CDS |
| CCAAGGTTTGGGAAAAGTCT+TGG | 0.461362 | 3.3:+31827200 | MS.gene89434:CDS |
| CTCTAAAGTGATGTGGTGTA+TGG | 0.517466 | 3.3:-31827143 | None:intergenic |
| ATCACTTTAGAGGTAAAAGA+TGG | 0.523463 | 3.3:+31827154 | MS.gene89434:CDS |
| AAAGTCTTGGATGAACTTCA+AGG | 0.534205 | 3.3:+31827213 | MS.gene89434:CDS |
| AGTTAAGTGCTTTACTGCGC+AGG | 0.534481 | 3.3:-31827268 | None:intergenic |
| AGAAGAATGGCAACGCTTGG+TGG | 0.543963 | 3.3:+31825628 | None:intergenic |
| AGAAGAAGAATGGCAACGCT+TGG | 0.566845 | 3.3:+31825625 | None:intergenic |
| CAGAACAGTCTTGCGATCGA+TGG | 0.591248 | 3.3:+31825673 | MS.gene89434:CDS |
| GATAAGTGCTAAAGAGCAAG+TGG | 0.632798 | 3.3:+31827111 | MS.gene89434:CDS |
| GTCTTGGATGAACTTCAAGG+AGG | 0.758137 | 3.3:+31827216 | MS.gene89434:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAGTTGTTAAATATA+TGG | - | chr3.3:31826372-31826391 | None:intergenic | 10.0% |
| !! | GAACAAAATAAATAAATAAA+CGG | - | chr3.3:31826964-31826983 | None:intergenic | 10.0% |
| !!! | ATTTTAAAGAATATGATATA+AGG | - | chr3.3:31826469-31826488 | None:intergenic | 10.0% |
| !!! | TTTTATCATTTTTATTTAGT+TGG | + | chr3.3:31827048-31827067 | MS.gene89434:intron | 10.0% |
| !! | ACTTTATAAATGTTTCAAAA+AGG | - | chr3.3:31826524-31826543 | None:intergenic | 15.0% |
| !! | CTACATGATAAATAAAAATT+GGG | - | chr3.3:31825936-31825955 | None:intergenic | 15.0% |
| !! | TAAAAAAAATTACAAGATGA+AGG | - | chr3.3:31825874-31825893 | None:intergenic | 15.0% |
| !!! | ATTTTGAGAAATACTAAAAT+TGG | + | chr3.3:31826768-31826787 | MS.gene89434:intron | 15.0% |
| !!! | TCTCAAATTTTTAATTAGAA+AGG | + | chr3.3:31826664-31826683 | MS.gene89434:intron | 15.0% |
| !!! | TTTTTAGTAAATATTCGATT+TGG | + | chr3.3:31825888-31825907 | MS.gene89434:intron | 15.0% |
| !! | GCTACATGATAAATAAAAAT+TGG | - | chr3.3:31825937-31825956 | None:intergenic | 20.0% |
| !! | TTAACAACTTACTCTTAATT+AGG | + | chr3.3:31826410-31826429 | MS.gene89434:intron | 20.0% |
| !! | TTGAAACATTTATAAAGTCA+AGG | + | chr3.3:31826526-31826545 | MS.gene89434:intron | 20.0% |
| !!! | GCAATTTTCTTTAGTTTTTT+TGG | + | chr3.3:31827009-31827028 | MS.gene89434:intron | 20.0% |
| !!! | TCGTAATTTTGTCAAAAAAA+GGG | - | chr3.3:31826068-31826087 | None:intergenic | 20.0% |
| ! | AAAAGATGGAGTGAATAAAA+AGG | + | chr3.3:31827168-31827187 | MS.gene89434:CDS | 25.0% |
| ! | AAAATAAGTAAAGACCCAAT+TGG | - | chr3.3:31826095-31826114 | None:intergenic | 25.0% |
| ! | ATAGAAAGTGGATAAACTTA+AGG | - | chr3.3:31826437-31826456 | None:intergenic | 25.0% |
| ! | TAATCAAGTTATGCTATGAA+AGG | - | chr3.3:31825758-31825777 | None:intergenic | 25.0% |
| ! | TATCCACTTTCTATCAATTT+AGG | + | chr3.3:31826443-31826462 | MS.gene89434:intron | 25.0% |
| ! | TTATGAGTAGTATGTCAAAA+CGG | + | chr3.3:31826317-31826336 | MS.gene89434:intron | 25.0% |
| !! | CGTAATTTTGTCAAAAAAAG+GGG | - | chr3.3:31826067-31826086 | None:intergenic | 25.0% |
| !! | CTCGTAATTTTGTCAAAAAA+AGG | - | chr3.3:31826069-31826088 | None:intergenic | 25.0% |
| AAAATTACGAGAGACCAATT+GGG | + | chr3.3:31826078-31826097 | MS.gene89434:intron | 30.0% | |
| AAAGAGTGAAGTTACATTCA+AGG | - | chr3.3:31826899-31826918 | None:intergenic | 30.0% | |
| ACTTGACACTTTAATAGAGT+CGG | - | chr3.3:31826345-31826364 | None:intergenic | 30.0% | |
| CAATTGTTGAATCTATCGAT+TGG | + | chr3.3:31826618-31826637 | MS.gene89434:intron | 30.0% | |
| CTTCTCTTATTCACTTTAAG+AGG | - | chr3.3:31825978-31825997 | None:intergenic | 30.0% | |
| TAAAAAGGTTTATGAAGCCA+AGG | + | chr3.3:31827183-31827202 | MS.gene89434:CDS | 30.0% | |
| TCTTTCAGTACTAAATGACT+TGG | + | chr3.3:31826914-31826933 | MS.gene89434:intron | 30.0% | |
| TGAAGAACACAACAAAAAAC+AGG | + | chr3.3:31825714-31825733 | MS.gene89434:CDS | 30.0% | |
| TGTCAAGTAACCTAATAAGT+GGG | - | chr3.3:31826259-31826278 | None:intergenic | 30.0% | |
| TTGTCAAGTAACCTAATAAG+TGG | - | chr3.3:31826260-31826279 | None:intergenic | 30.0% | |
| ! | ACTCTATTAAAGTGTCAAGT+TGG | + | chr3.3:31826345-31826364 | MS.gene89434:intron | 30.0% |
| ! | ATCACTTTAGAGGTAAAAGA+TGG | + | chr3.3:31827154-31827173 | MS.gene89434:CDS | 30.0% |
| ! | TGGTTTTCTCGGTAAAAATA+TGG | + | chr3.3:31826576-31826595 | MS.gene89434:intron | 30.0% |
| !!! | AAATAAACGGCTTTAGCTTT+TGG | - | chr3.3:31826951-31826970 | None:intergenic | 30.0% |
| AAAGTCTTGGATGAACTTCA+AGG | + | chr3.3:31827213-31827232 | MS.gene89434:CDS | 35.0% | |
| AATTTGAGAGATCTCACTGA+AGG | - | chr3.3:31826653-31826672 | None:intergenic | 35.0% | |
| ACAGTGAATACTATATGCAG+GGG | + | chr3.3:31826211-31826230 | MS.gene89434:intron | 35.0% | |
| ACATACTACTCATAACCTCA+AGG | - | chr3.3:31826312-31826331 | None:intergenic | 35.0% | |
| AGGCCTAAATTGATAGAAAG+TGG | - | chr3.3:31826449-31826468 | None:intergenic | 35.0% | |
| CAAAATTACGAGAGACCAAT+TGG | + | chr3.3:31826077-31826096 | MS.gene89434:intron | 35.0% | |
| CAATATCGAGCTATACTCAA+GGG | + | chr3.3:31826028-31826047 | MS.gene89434:intron | 35.0% | |
| CCAACACTACATTGTTTCAA+TGG | - | chr3.3:31826730-31826749 | None:intergenic | 35.0% | |
| CCATTGAAACAATGTAGTGT+TGG | + | chr3.3:31826727-31826746 | MS.gene89434:intron | 35.0% | |
| CTTGACACTTTAATAGAGTC+GGG | - | chr3.3:31826344-31826363 | None:intergenic | 35.0% | |
| GACAGTGAATACTATATGCA+GGG | + | chr3.3:31826210-31826229 | MS.gene89434:intron | 35.0% | |
| GTCAAGTAACCTAATAAGTG+GGG | - | chr3.3:31826258-31826277 | None:intergenic | 35.0% | |
| TGTATAAAGTTTACGATGCG+AGG | - | chr3.3:31826836-31826855 | None:intergenic | 35.0% | |
| TGTTCCTTAAACAAGATCAC+AGG | - | chr3.3:31826696-31826715 | None:intergenic | 35.0% | |
| TTGAGTATAGCTCGATATTG+CGG | - | chr3.3:31826028-31826047 | None:intergenic | 35.0% | |
| TTTGTGACAAAAGCGATCAT+CGG | - | chr3.3:31825828-31825847 | None:intergenic | 35.0% | |
| !!! | ATGCACTTCTGGAATTTTCA+AGG | + | chr3.3:31827086-31827105 | MS.gene89434:CDS | 35.0% |
| !!! | CTTTAGCTTTTGGTAAGAGA+CGG | - | chr3.3:31826941-31826960 | None:intergenic | 35.0% |
| !!! | CTTTTACCTCTAAAGTGATG+TGG | - | chr3.3:31827153-31827172 | None:intergenic | 35.0% |
| !!! | TGCACTTCTGGAATTTTCAA+GGG | + | chr3.3:31827087-31827106 | MS.gene89434:CDS | 35.0% |
| ACTTAGACACCCCACTTATT+AGG | + | chr3.3:31826246-31826265 | MS.gene89434:intron | 40.0% | |
| AGGTTTATGAAGCCAAGGTT+TGG | + | chr3.3:31827188-31827207 | MS.gene89434:CDS | 40.0% | |
| ATAACCTCAAGGACCTACTT+CGG | - | chr3.3:31826301-31826320 | None:intergenic | 40.0% | |
| ATACCAACTGAGCTAAACTC+AGG | - | chr3.3:31826181-31826200 | None:intergenic | 40.0% | |
| CATACACCACATCACTTTAG+AGG | + | chr3.3:31827144-31827163 | MS.gene89434:CDS | 40.0% | |
| CGACAGTGAATACTATATGC+AGG | + | chr3.3:31826209-31826228 | MS.gene89434:intron | 40.0% | |
| GACTGCTAGATTCATACAAG+AGG | + | chr3.3:31826873-31826892 | MS.gene89434:intron | 40.0% | |
| GATAAGTGCTAAAGAGCAAG+TGG | + | chr3.3:31827111-31827130 | MS.gene89434:CDS | 40.0% | |
| GCAATATCGAGCTATACTCA+AGG | + | chr3.3:31826027-31826046 | MS.gene89434:intron | 40.0% | |
| GGTTTATGAAGCCAAGGTTT+GGG | + | chr3.3:31827189-31827208 | MS.gene89434:CDS | 40.0% | |
| TACCAACTGAGCTAAACTCA+GGG | - | chr3.3:31826180-31826199 | None:intergenic | 40.0% | |
| TGTTATGCAGAATGCACTTC+TGG | + | chr3.3:31827075-31827094 | MS.gene89434:intron | 40.0% | |
| ! | ATTGCAGGGCACTCTTAAAT+AGG | - | chr3.3:31826553-31826572 | None:intergenic | 40.0% |
| ! | CGAACCTGTGATCTTGTTTA+AGG | + | chr3.3:31826689-31826708 | MS.gene89434:intron | 40.0% |
| ! | GTTGAATCTATCGATTGGTC+TGG | + | chr3.3:31826623-31826642 | MS.gene89434:intron | 40.0% |
| ! | TGAGTTTAGCTCAGTTGGTA+TGG | + | chr3.3:31826180-31826199 | MS.gene89434:intron | 40.0% |
| !! | ATTTAAGAGTGCCCTGCAAT+TGG | + | chr3.3:31826553-31826572 | MS.gene89434:intron | 40.0% |
| !! | CTCTAAAGTGATGTGGTGTA+TGG | - | chr3.3:31827146-31827165 | None:intergenic | 40.0% |
| AACTGAGCTAAACTCAGGGA+CGG | - | chr3.3:31826176-31826195 | None:intergenic | 45.0% | |
| AATACTATATGCAGGGGCTG+AGG | + | chr3.3:31826217-31826236 | MS.gene89434:intron | 45.0% | |
| CCAAGGTTTGGGAAAAGTCT+TGG | + | chr3.3:31827200-31827219 | MS.gene89434:CDS | 45.0% | |
| CGAGAAAACCACCAATTGCA+GGG | - | chr3.3:31826567-31826586 | None:intergenic | 45.0% | |
| GTCTTGGATGAACTTCAAGG+AGG | + | chr3.3:31827216-31827235 | MS.gene89434:CDS | 45.0% | |
| ! | CCAAGACTTTTCCCAAACCT+TGG | - | chr3.3:31827203-31827222 | None:intergenic | 45.0% |
| !! | ATTGAGTTGACCTCCGAAGT+AGG | + | chr3.3:31826285-31826304 | MS.gene89434:intron | 45.0% |
| !! | CCTGCAATTGGTGGTTTTCT+CGG | + | chr3.3:31826565-31826584 | MS.gene89434:intron | 45.0% |
| !! | GAATCTATCGATTGGTCTGG+AGG | + | chr3.3:31826626-31826645 | MS.gene89434:intron | 45.0% |
| !!! | TTTTATTTTTGATTTTTTTA+GGG | + | chr3.3:31826117-31826136 | MS.gene89434:intron | 5.0% |
| !!! | TTTTTATTTTTGATTTTTTT+AGG | + | chr3.3:31826116-31826135 | MS.gene89434:intron | 5.0% |
| AGCTCGATATTGCGGTATGC+AGG | - | chr3.3:31826020-31826039 | None:intergenic | 50.0% | |
| CAGAACAGTCTTGCGATCGA+TGG | + | chr3.3:31825673-31825692 | MS.gene89434:CDS | 50.0% | |
| CATCGATCGCAAGACTGTTC+TGG | - | chr3.3:31825675-31825694 | None:intergenic | 50.0% | |
| CCGAGAAAACCACCAATTGC+AGG | - | chr3.3:31826568-31826587 | None:intergenic | 50.0% | |
| GCTAAAGAGCAAGTGGTTGC+TGG | + | chr3.3:31827118-31827137 | MS.gene89434:CDS | 50.0% | |
| ! | GTCCCTGAGTTTAGCTCAGT+TGG | + | chr3.3:31826175-31826194 | MS.gene89434:intron | 50.0% |
| !! | TAAGAGTGCCCTGCAATTGG+TGG | + | chr3.3:31826556-31826575 | MS.gene89434:intron | 50.0% |
| ACCTCAAGGACCTACTTCGG+AGG | - | chr3.3:31826298-31826317 | None:intergenic | 55.0% | |
| ACCTCCGAAGTAGGTCCTTG+AGG | + | chr3.3:31826294-31826313 | MS.gene89434:intron | 55.0% | |
| GGTGGAGTTCGCGATGTTTC+AGG | + | chr3.3:31825646-31825665 | MS.gene89434:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 31825634 | 31827279 | 31825634 | ID=MS.gene89434 |
| chr3.3 | mRNA | 31825634 | 31827279 | 31825634 | ID=MS.gene89434.t1;Parent=MS.gene89434 |
| chr3.3 | exon | 31825634 | 31825735 | 31825634 | ID=MS.gene89434.t1.exon1;Parent=MS.gene89434.t1 |
| chr3.3 | CDS | 31825634 | 31825735 | 31825634 | ID=cds.MS.gene89434.t1;Parent=MS.gene89434.t1 |
| chr3.3 | exon | 31827085 | 31827279 | 31827085 | ID=MS.gene89434.t1.exon2;Parent=MS.gene89434.t1 |
| chr3.3 | CDS | 31827085 | 31827279 | 31827085 | ID=cds.MS.gene89434.t1;Parent=MS.gene89434.t1 |
| Gene Sequence |
| Protein sequence |
