Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89812.t1 | RHN46212.1 | 85.7 | 230 | 32 | 1 | 1 | 229 | 1 | 230 | 2.60E-101 | 378.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89812.t1 | A0A072TZR0 | 85.7 | 230 | 32 | 1 | 1 | 229 | 229 | 458 | 1.9e-101 | 378.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene89812 | 0.808171 | 3.53E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene89812 | 0.84981 | 2.55E-60 | -1.69E-46 |
| MS.gene049283 | MS.gene89812 | 0.802232 | 6.19E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene89812 | 0.807726 | 4.39E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene89812 | 0.821656 | 3.60E-53 | -1.69E-46 |
| MS.gene049807 | MS.gene89812 | 0.80944 | 1.89E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene89812 | 0.800019 | 1.75E-48 | -1.69E-46 |
| MS.gene050253 | MS.gene89812 | 0.813471 | 2.52E-51 | -1.69E-46 |
| MS.gene050556 | MS.gene89812 | 0.807829 | 4.18E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene89812 | 0.807438 | 5.05E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene89812 | 0.803973 | 2.70E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene89812 | 0.804391 | 2.21E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene89812 | 0.810139 | 1.34E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene89812 | 0.804886 | 1.74E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene89812 | 0.800573 | 1.35E-48 | -1.69E-46 |
| MS.gene052016 | MS.gene89812 | 0.826033 | 3.39E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene89812 | 0.841711 | 4.03E-58 | -1.69E-46 |
| MS.gene052493 | MS.gene89812 | 0.806103 | 9.68E-50 | -1.69E-46 |
| MS.gene052534 | MS.gene89812 | 0.803081 | 4.13E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene89812 | 0.807069 | 6.05E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene89812 | 0.811397 | 7.15E-51 | -1.69E-46 |
| MS.gene054222 | MS.gene89812 | 0.834708 | 2.56E-56 | -1.69E-46 |
| MS.gene05423 | MS.gene89812 | 0.842076 | 3.22E-58 | -1.69E-46 |
| MS.gene054576 | MS.gene89812 | 0.832634 | 8.45E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene89812 | 0.800852 | 1.19E-48 | -1.69E-46 |
| MS.gene054991 | MS.gene89812 | 0.814683 | 1.36E-51 | -1.69E-46 |
| MS.gene05539 | MS.gene89812 | 0.834875 | 2.33E-56 | -1.69E-46 |
| MS.gene055513 | MS.gene89812 | 0.835327 | 1.79E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene89812 | 0.802774 | 4.78E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene89812 | 0.835165 | 1.97E-56 | -1.69E-46 |
| MS.gene057919 | MS.gene89812 | 0.811731 | 6.04E-51 | -1.69E-46 |
| MS.gene058279 | MS.gene89812 | 0.805077 | 1.59E-49 | -1.69E-46 |
| MS.gene058492 | MS.gene89812 | 0.811369 | 7.25E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene89812 | 0.814647 | 1.38E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene89812 | 0.835514 | 1.61E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene89812 | -0.810075 | 1.38E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene89812 | 0.813479 | 2.51E-51 | -1.69E-46 |
| MS.gene060012 | MS.gene89812 | 0.801297 | 9.62E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene89812 | 0.815439 | 9.24E-52 | -1.69E-46 |
| MS.gene060373 | MS.gene89812 | 0.81092 | 9.07E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene89812 | 0.835391 | 1.72E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89812.t1 | MTR_7g063670 | 85.652 | 230 | 32 | 1 | 1 | 229 | 229 | 458 | 5.61e-136 | 390 |
| MS.gene89812.t1 | MTR_3g007740 | 60.684 | 234 | 72 | 3 | 2 | 223 | 218 | 443 | 3.51e-84 | 257 |
| MS.gene89812.t1 | MTR_7g063920 | 50.607 | 247 | 97 | 6 | 2 | 229 | 197 | 437 | 5.97e-61 | 197 |
| MS.gene89812.t1 | MTR_7g063920 | 27.941 | 204 | 113 | 6 | 24 | 216 | 11 | 191 | 7.14e-13 | 67.4 |
| MS.gene89812.t1 | MTR_7g062280 | 44.882 | 254 | 107 | 5 | 2 | 229 | 246 | 492 | 7.83e-61 | 198 |
| MS.gene89812.t1 | MTR_7g062300 | 46.721 | 244 | 99 | 6 | 2 | 221 | 236 | 472 | 1.73e-56 | 186 |
| MS.gene89812.t1 | MTR_7g063720 | 44.939 | 247 | 104 | 7 | 1 | 229 | 1 | 233 | 3.15e-55 | 177 |
| MS.gene89812.t1 | MTR_7g063840 | 45.455 | 253 | 105 | 6 | 2 | 229 | 230 | 474 | 2.36e-53 | 178 |
| MS.gene89812.t1 | MTR_7g063660 | 43.701 | 254 | 114 | 5 | 1 | 229 | 229 | 478 | 8.70e-53 | 177 |
| MS.gene89812.t1 | MTR_7g063880 | 42.460 | 252 | 101 | 8 | 2 | 228 | 236 | 468 | 7.24e-46 | 159 |
| MS.gene89812.t1 | MTR_7g063820 | 39.216 | 255 | 125 | 5 | 2 | 229 | 234 | 485 | 4.74e-44 | 154 |
| MS.gene89812.t1 | MTR_7g063900 | 43.130 | 262 | 111 | 8 | 2 | 229 | 232 | 489 | 1.01e-42 | 150 |
| MS.gene89812.t1 | MTR_7g063830 | 43.220 | 236 | 102 | 4 | 2 | 228 | 232 | 444 | 1.50e-42 | 149 |
| MS.gene89812.t1 | MTR_7g063830 | 26.126 | 222 | 128 | 6 | 25 | 216 | 11 | 226 | 5.48e-11 | 62.0 |
| MS.gene89812.t1 | MTR_7g063850 | 40.164 | 244 | 111 | 8 | 13 | 228 | 52 | 288 | 3.92e-41 | 142 |
| MS.gene89812.t1 | MTR_7g066570 | 37.339 | 233 | 119 | 4 | 20 | 226 | 253 | 484 | 6.80e-40 | 144 |
| MS.gene89812.t1 | MTR_7g063760 | 86.486 | 74 | 10 | 0 | 156 | 229 | 1 | 74 | 1.03e-39 | 131 |
| MS.gene89812.t1 | MTR_7g066410 | 39.914 | 233 | 106 | 6 | 25 | 225 | 285 | 515 | 6.60e-38 | 138 |
| MS.gene89812.t1 | MTR_7g012680 | 39.070 | 215 | 125 | 4 | 20 | 229 | 239 | 452 | 1.17e-37 | 136 |
| MS.gene89812.t1 | MTR_7g066260 | 40.887 | 203 | 107 | 3 | 24 | 222 | 269 | 462 | 5.72e-37 | 135 |
| MS.gene89812.t1 | MTR_7g058710 | 38.197 | 233 | 116 | 4 | 24 | 229 | 253 | 484 | 2.96e-35 | 130 |
| MS.gene89812.t1 | MTR_7g066480 | 41.206 | 199 | 77 | 4 | 25 | 223 | 264 | 422 | 7.33e-35 | 129 |
| MS.gene89812.t1 | MTR_7g063890 | 42.146 | 261 | 113 | 9 | 2 | 228 | 248 | 504 | 9.67e-34 | 126 |
| MS.gene89812.t1 | MTR_7g058700 | 40.976 | 205 | 92 | 3 | 25 | 229 | 753 | 928 | 1.19e-33 | 128 |
| MS.gene89812.t1 | MTR_7g066400 | 37.073 | 205 | 128 | 1 | 14 | 218 | 230 | 433 | 3.34e-33 | 124 |
| MS.gene89812.t1 | MTR_7g066430 | 39.076 | 238 | 105 | 8 | 20 | 222 | 253 | 485 | 6.81e-32 | 121 |
| MS.gene89812.t1 | MTR_7g066490 | 38.579 | 197 | 81 | 4 | 27 | 223 | 252 | 408 | 3.34e-30 | 115 |
| MS.gene89812.t1 | MTR_7g066290 | 39.698 | 199 | 88 | 4 | 24 | 222 | 267 | 433 | 3.85e-30 | 116 |
| MS.gene89812.t1 | MTR_7g066280 | 36.929 | 241 | 108 | 5 | 25 | 222 | 151 | 390 | 7.22e-30 | 115 |
| MS.gene89812.t1 | MTR_7g066580 | 33.333 | 234 | 122 | 5 | 25 | 225 | 216 | 448 | 1.71e-29 | 114 |
| MS.gene89812.t1 | MTR_7g066360 | 38.265 | 196 | 105 | 4 | 24 | 219 | 267 | 446 | 3.06e-29 | 114 |
| MS.gene89812.t1 | MTR_7g066680 | 34.127 | 252 | 106 | 7 | 24 | 218 | 86 | 334 | 3.27e-29 | 112 |
| MS.gene89812.t1 | MTR_7g066310 | 36.869 | 198 | 117 | 3 | 25 | 222 | 194 | 383 | 1.35e-28 | 111 |
| MS.gene89812.t1 | MTR_7g100420 | 35.950 | 242 | 125 | 6 | 2 | 218 | 157 | 393 | 1.81e-28 | 111 |
| MS.gene89812.t1 | MTR_1g041315 | 38.624 | 189 | 105 | 5 | 20 | 206 | 272 | 451 | 9.93e-28 | 110 |
| MS.gene89812.t1 | MTR_7g066350 | 35.545 | 211 | 125 | 3 | 20 | 229 | 257 | 457 | 7.58e-27 | 107 |
| MS.gene89812.t1 | MTR_7g066340 | 35.354 | 198 | 120 | 2 | 25 | 222 | 264 | 453 | 9.11e-27 | 107 |
| MS.gene89812.t1 | MTR_7g063750 | 60.000 | 95 | 34 | 2 | 134 | 227 | 1 | 92 | 5.98e-25 | 98.2 |
| MS.gene89812.t1 | MTR_1g014060 | 35.519 | 183 | 110 | 2 | 54 | 229 | 210 | 391 | 1.21e-23 | 97.8 |
| MS.gene89812.t1 | MTR_4g019310 | 31.727 | 249 | 136 | 9 | 11 | 229 | 253 | 497 | 1.67e-23 | 98.2 |
| MS.gene89812.t1 | MTR_3g065200 | 30.275 | 218 | 111 | 6 | 18 | 209 | 206 | 408 | 7.51e-22 | 93.6 |
| MS.gene89812.t1 | MTR_7g066390 | 36.306 | 157 | 64 | 3 | 66 | 222 | 2 | 122 | 1.32e-17 | 77.0 |
| MS.gene89812.t1 | MTR_7g063690 | 64.706 | 51 | 18 | 0 | 1 | 51 | 172 | 222 | 1.23e-13 | 68.2 |
| MS.gene89812.t1 | MTR_2g029400 | 30.729 | 192 | 103 | 5 | 49 | 212 | 216 | 405 | 1.45e-12 | 66.6 |
| MS.gene89812.t1 | MTR_4g017610 | 28.293 | 205 | 133 | 5 | 27 | 218 | 272 | 475 | 6.76e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89812.t1 | AT5G01130 | 31.944 | 216 | 129 | 7 | 20 | 229 | 248 | 451 | 1.85e-18 | 84.0 |
| MS.gene89812.t1 | AT5G01140 | 28.063 | 253 | 131 | 8 | 9 | 229 | 225 | 458 | 2.78e-15 | 74.7 |
| MS.gene89812.t1 | AT5G37320 | 29.577 | 213 | 135 | 8 | 25 | 224 | 271 | 481 | 6.56e-13 | 67.8 |
Find 35 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTAACCACGTACATTTC+TGG | 0.179686 | 7.3:-41580556 | None:intergenic |
| ATTAATATCATCATTAAATA+TGG | 0.226870 | 7.3:-41580146 | None:intergenic |
| CTTAGAAGGGAATAGTTCTT+TGG | 0.229478 | 7.3:+41580291 | MS.gene89812:CDS |
| CAAAACTTCTCTTAATGATC+TGG | 0.348610 | 7.3:+41580639 | MS.gene89812:CDS |
| AGTTCTTTGGGAAGTATTGA+TGG | 0.349836 | 7.3:+41580304 | MS.gene89812:CDS |
| AGTATATATATAGATGAAAC+TGG | 0.371045 | 7.3:-41580607 | None:intergenic |
| ATCCTTGATTTCTCGATATG+AGG | 0.374371 | 7.3:-41580103 | None:intergenic |
| GTGATGAAGATGGGAGGGAT+TGG | 0.398301 | 7.3:+41580458 | MS.gene89812:CDS |
| TTAGAAGGGAATAGTTCTTT+GGG | 0.400686 | 7.3:+41580292 | MS.gene89812:CDS |
| CGTTTCTTAACATTTCCATT+GGG | 0.468800 | 7.3:+41580253 | MS.gene89812:CDS |
| GCAGAGTCACAGCATATTCA+AGG | 0.477264 | 7.3:+41580962 | MS.gene89812:intron |
| ACGTTTCTTAACATTTCCAT+TGG | 0.480881 | 7.3:+41580252 | MS.gene89812:CDS |
| CTTGTTAACACAAATTAAGA+AGG | 0.481190 | 7.3:+41581028 | MS.gene89812:CDS |
| TTCTTAACATTTCCATTGGG+TGG | 0.500846 | 7.3:+41580256 | MS.gene89812:CDS |
| GACATTATATTATATGCTCA+AGG | 0.503201 | 7.3:+41580202 | MS.gene89812:CDS |
| TATCGAAGGATGCAAAGAAC+AGG | 0.512053 | 7.3:+41580371 | MS.gene89812:CDS |
| TCAACGTCTGCTCTAACAAA+TGG | 0.520066 | 7.3:+41580996 | MS.gene89812:CDS |
| GACTTGCCGCATGGTGGACC+TGG | 0.523472 | 7.3:+41580517 | MS.gene89812:CDS |
| AATTACCTCTTTGATGCCAA+TGG | 0.525143 | 7.3:-41580677 | None:intergenic |
| AACCTCATATCGAGAAATCA+AGG | 0.529213 | 7.3:+41580101 | MS.gene89812:CDS |
| TCCACCATGCGGCAAGTCAA+TGG | 0.533548 | 7.3:-41580512 | None:intergenic |
| TAATTTGTGTTAACAAGTGA+CGG | 0.537543 | 7.3:-41581022 | None:intergenic |
| GGTTTCTTGACATAAACTCC+AGG | 0.555287 | 7.3:-41580535 | None:intergenic |
| CATTATATTATATGCTCAAG+GGG | 0.573209 | 7.3:+41580204 | MS.gene89812:CDS |
| ACATTATATTATATGCTCAA+GGG | 0.581121 | 7.3:+41580203 | MS.gene89812:CDS |
| AGAAAAGTATTTCATATCGA+AGG | 0.586970 | 7.3:+41580357 | MS.gene89812:CDS |
| AACTTCTCTTAATGATCTGG+AGG | 0.587581 | 7.3:+41580642 | MS.gene89812:CDS |
| TTGCGCAAAACTCCACCCAA+TGG | 0.594851 | 7.3:-41580268 | None:intergenic |
| AATACCATTGACTTGCCGCA+TGG | 0.596786 | 7.3:+41580508 | MS.gene89812:CDS |
| ACCATTGACTTGCCGCATGG+TGG | 0.629935 | 7.3:+41580511 | MS.gene89812:CDS |
| TGTCACCATTGGCATCAAAG+AGG | 0.672938 | 7.3:+41580672 | MS.gene89812:CDS |
| CAAGAAACCAGAAATGTACG+TGG | 0.689087 | 7.3:+41580549 | MS.gene89812:CDS |
| GATGAAACTGGAGACAACAA+CGG | 0.697583 | 7.3:-41580595 | None:intergenic |
| TAAACTCCAGGTCCACCATG+CGG | 0.736990 | 7.3:-41580523 | None:intergenic |
| ATTATATTATATGCTCAAGG+GGG | 0.741500 | 7.3:+41580205 | MS.gene89812:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATATCATCATTAAATA+TGG | - | chr7.3:41580149-41580168 | None:intergenic | 10.0% |
| !! | ATCAAAGTGATAATTATTTA+AGG | + | chr7.3:41580715-41580734 | MS.gene89812:intron | 15.0% |
| !! | ACATTATATTATATGCTCAA+GGG | + | chr7.3:41580203-41580222 | MS.gene89812:CDS | 20.0% |
| !! | AGTATATATATAGATGAAAC+TGG | - | chr7.3:41580610-41580629 | None:intergenic | 20.0% |
| !!! | AGTGTTTTGAAATATTATTG+TGG | + | chr7.3:41580406-41580425 | MS.gene89812:CDS | 20.0% |
| !!! | TTTTAAAAAGTGATGAAGAT+GGG | + | chr7.3:41580449-41580468 | MS.gene89812:CDS | 20.0% |
| ! | ATTATATTATATGCTCAAGG+GGG | + | chr7.3:41580205-41580224 | MS.gene89812:CDS | 25.0% |
| ! | CATTATATTATATGCTCAAG+GGG | + | chr7.3:41580204-41580223 | MS.gene89812:CDS | 25.0% |
| ! | CTTGTTAACACAAATTAAGA+AGG | + | chr7.3:41581028-41581047 | MS.gene89812:CDS | 25.0% |
| ! | GACATTATATTATATGCTCA+AGG | + | chr7.3:41580202-41580221 | MS.gene89812:CDS | 25.0% |
| !! | TAATTTGTGTTAACAAGTGA+CGG | - | chr7.3:41581025-41581044 | None:intergenic | 25.0% |
| !!! | AGAAAAGTATTTCATATCGA+AGG | + | chr7.3:41580357-41580376 | MS.gene89812:CDS | 25.0% |
| !!! | CTTTTAAAAAGTGATGAAGA+TGG | + | chr7.3:41580448-41580467 | MS.gene89812:CDS | 25.0% |
| ACATCTTAGAAAAATGCAAC+TGG | + | chr7.3:41580483-41580502 | MS.gene89812:CDS | 30.0% | |
| ACGTTTCTTAACATTTCCAT+TGG | + | chr7.3:41580252-41580271 | MS.gene89812:CDS | 30.0% | |
| CAAAACTTCTCTTAATGATC+TGG | + | chr7.3:41580639-41580658 | MS.gene89812:CDS | 30.0% | |
| CGTTTCTTAACATTTCCATT+GGG | + | chr7.3:41580253-41580272 | MS.gene89812:CDS | 30.0% | |
| TTAGAAGGGAATAGTTCTTT+GGG | + | chr7.3:41580292-41580311 | MS.gene89812:CDS | 30.0% | |
| ! | TTATCACCTTCACTATTTTG+CGG | + | chr7.3:41580756-41580775 | MS.gene89812:intron | 30.0% |
| !! | TTTTCTGATAACTAGCTTCA+CGG | - | chr7.3:41580176-41580195 | None:intergenic | 30.0% |
| AAAAAGTGATGAAGATGGGA+GGG | + | chr7.3:41580453-41580472 | MS.gene89812:CDS | 35.0% | |
| AACCTCATATCGAGAAATCA+AGG | + | chr7.3:41580101-41580120 | MS.gene89812:CDS | 35.0% | |
| AACTTCTCTTAATGATCTGG+AGG | + | chr7.3:41580642-41580661 | MS.gene89812:CDS | 35.0% | |
| AATTACCTCTTTGATGCCAA+TGG | - | chr7.3:41580680-41580699 | None:intergenic | 35.0% | |
| ATCCTTGATTTCTCGATATG+AGG | - | chr7.3:41580106-41580125 | None:intergenic | 35.0% | |
| CTTAGAAGGGAATAGTTCTT+TGG | + | chr7.3:41580291-41580310 | MS.gene89812:CDS | 35.0% | |
| TAAAAAGTGATGAAGATGGG+AGG | + | chr7.3:41580452-41580471 | MS.gene89812:CDS | 35.0% | |
| TTCTTAACATTTCCATTGGG+TGG | + | chr7.3:41580256-41580275 | MS.gene89812:CDS | 35.0% | |
| !! | AGTTCTTTGGGAAGTATTGA+TGG | + | chr7.3:41580304-41580323 | MS.gene89812:CDS | 35.0% |
| ACACAACCGCAAAATAGTGA+AGG | - | chr7.3:41580765-41580784 | None:intergenic | 40.0% | |
| CAAGAAACCAGAAATGTACG+TGG | + | chr7.3:41580549-41580568 | MS.gene89812:CDS | 40.0% | |
| GAGGAAAAAGTTGTCACCAT+TGG | + | chr7.3:41580661-41580680 | MS.gene89812:CDS | 40.0% | |
| GATGAAACTGGAGACAACAA+CGG | - | chr7.3:41580598-41580617 | None:intergenic | 40.0% | |
| GGTTTCTTGACATAAACTCC+AGG | - | chr7.3:41580538-41580557 | None:intergenic | 40.0% | |
| TATCGAAGGATGCAAAGAAC+AGG | + | chr7.3:41580371-41580390 | MS.gene89812:CDS | 40.0% | |
| TCAACGTCTGCTCTAACAAA+TGG | + | chr7.3:41580996-41581015 | MS.gene89812:CDS | 40.0% | |
| TCTGTAACCACGTACATTTC+TGG | - | chr7.3:41580559-41580578 | None:intergenic | 40.0% | |
| ! | GAGTTTTGCGCAACTTAGAA+GGG | + | chr7.3:41580278-41580297 | MS.gene89812:CDS | 40.0% |
| GCAGAGTCACAGCATATTCA+AGG | + | chr7.3:41580962-41580981 | MS.gene89812:intron | 45.0% | |
| TGTCACCATTGGCATCAAAG+AGG | + | chr7.3:41580672-41580691 | MS.gene89812:CDS | 45.0% | |
| ! | GGAGTTTTGCGCAACTTAGA+AGG | + | chr7.3:41580277-41580296 | MS.gene89812:CDS | 45.0% |
| !! | AATACCATTGACTTGCCGCA+TGG | + | chr7.3:41580508-41580527 | MS.gene89812:CDS | 45.0% |
| GTGATGAAGATGGGAGGGAT+TGG | + | chr7.3:41580458-41580477 | MS.gene89812:CDS | 50.0% | |
| TAAACTCCAGGTCCACCATG+CGG | - | chr7.3:41580526-41580545 | None:intergenic | 50.0% | |
| TTGCGCAAAACTCCACCCAA+TGG | - | chr7.3:41580271-41580290 | None:intergenic | 50.0% | |
| TCCACCATGCGGCAAGTCAA+TGG | - | chr7.3:41580515-41580534 | None:intergenic | 55.0% | |
| !! | ACCATTGACTTGCCGCATGG+TGG | + | chr7.3:41580511-41580530 | MS.gene89812:CDS | 55.0% |
| !! | GACTTGCCGCATGGTGGACC+TGG | + | chr7.3:41580517-41580536 | MS.gene89812:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 41580097 | 41581058 | 41580097 | ID=MS.gene89812 |
| chr7.3 | mRNA | 41580097 | 41581058 | 41580097 | ID=MS.gene89812.t1;Parent=MS.gene89812 |
| chr7.3 | exon | 41580097 | 41580693 | 41580097 | ID=MS.gene89812.t1.exon1;Parent=MS.gene89812.t1 |
| chr7.3 | CDS | 41580097 | 41580693 | 41580097 | ID=cds.MS.gene89812.t1;Parent=MS.gene89812.t1 |
| chr7.3 | exon | 41580966 | 41581058 | 41580966 | ID=MS.gene89812.t1.exon2;Parent=MS.gene89812.t1 |
| chr7.3 | CDS | 41580966 | 41581058 | 41580966 | ID=cds.MS.gene89812.t1;Parent=MS.gene89812.t1 |
| Gene Sequence |
| Protein sequence |
