Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90462.t1 | KEH31492.1 | 96.6 | 828 | 18 | 2 | 1 | 828 | 1 | 818 | 0.00E+00 | 1476.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90462.t1 | Q9M3H5 | 74.7 | 723 | 178 | 2 | 105 | 827 | 102 | 819 | 8.2e-313 | 1074.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90462.t1 | A0A072UP92 | 96.6 | 828 | 18 | 2 | 1 | 828 | 1 | 818 | 0.0e+00 | 1476.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene90462 | 0.850868 | 1.29E-60 | -1.69E-46 |
| MS.gene050122 | MS.gene90462 | 0.8559 | 4.62E-62 | -1.69E-46 |
| MS.gene050520 | MS.gene90462 | 0.833314 | 5.72E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene90462 | 0.828463 | 8.86E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene90462 | 0.830053 | 3.65E-55 | -1.69E-46 |
| MS.gene050704 | MS.gene90462 | 0.80473 | 1.88E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene90462 | 0.819698 | 1.01E-52 | -1.69E-46 |
| MS.gene051255 | MS.gene90462 | 0.803473 | 3.43E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene90462 | 0.885485 | 7.81E-72 | -1.69E-46 |
| MS.gene051387 | MS.gene90462 | 0.83608 | 1.15E-56 | -1.69E-46 |
| MS.gene051521 | MS.gene90462 | 0.815728 | 7.97E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene90462 | 0.83972 | 1.34E-57 | -1.69E-46 |
| MS.gene051588 | MS.gene90462 | 0.82705 | 1.94E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene90462 | 0.824823 | 6.55E-54 | -1.69E-46 |
| MS.gene051941 | MS.gene90462 | 0.810246 | 1.27E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene90462 | -0.817065 | 4.00E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene90462 | 0.802217 | 6.23E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene90462 | 0.836565 | 8.68E-57 | -1.69E-46 |
| MS.gene052414 | MS.gene90462 | 0.853082 | 3.02E-61 | -1.69E-46 |
| MS.gene052485 | MS.gene90462 | 0.826138 | 3.20E-54 | -1.69E-46 |
| MS.gene052982 | MS.gene90462 | 0.847166 | 1.37E-59 | -1.69E-46 |
| MS.gene052999 | MS.gene90462 | 0.83171 | 1.43E-55 | -1.69E-46 |
| MS.gene053169 | MS.gene90462 | 0.880493 | 5.25E-70 | -1.69E-46 |
| MS.gene053207 | MS.gene90462 | 0.821078 | 4.89E-53 | -1.69E-46 |
| MS.gene053209 | MS.gene90462 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene053318 | MS.gene90462 | 0.864231 | 1.41E-64 | -1.69E-46 |
| MS.gene05335 | MS.gene90462 | 0.824446 | 8.04E-54 | -1.69E-46 |
| MS.gene054556 | MS.gene90462 | 0.873499 | 1.40E-67 | -1.69E-46 |
| MS.gene054920 | MS.gene90462 | 0.832754 | 7.89E-56 | -1.69E-46 |
| MS.gene054927 | MS.gene90462 | 0.808118 | 3.62E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene90462 | 0.810659 | 1.03E-50 | -1.69E-46 |
| MS.gene055369 | MS.gene90462 | 0.835384 | 1.73E-56 | -1.69E-46 |
| MS.gene055539 | MS.gene90462 | 0.841184 | 5.54E-58 | -1.69E-46 |
| MS.gene05553 | MS.gene90462 | 0.800746 | 1.25E-48 | -1.69E-46 |
| MS.gene055666 | MS.gene90462 | 0.808482 | 3.03E-50 | -1.69E-46 |
| MS.gene055741 | MS.gene90462 | 0.872484 | 3.07E-67 | -1.69E-46 |
| MS.gene055744 | MS.gene90462 | 0.873182 | 1.79E-67 | -1.69E-46 |
| MS.gene055892 | MS.gene90462 | 0.823558 | 1.30E-53 | -1.69E-46 |
| MS.gene055893 | MS.gene90462 | 0.81754 | 3.13E-52 | -1.69E-46 |
| MS.gene055894 | MS.gene90462 | 0.813089 | 3.05E-51 | -1.69E-46 |
| MS.gene055909 | MS.gene90462 | 0.84648 | 2.12E-59 | -1.69E-46 |
| MS.gene055911 | MS.gene90462 | 0.854089 | 1.55E-61 | -1.69E-46 |
| MS.gene05594 | MS.gene90462 | 0.813597 | 2.36E-51 | -1.69E-46 |
| MS.gene05601 | MS.gene90462 | 0.831448 | 1.66E-55 | -1.69E-46 |
| MS.gene056166 | MS.gene90462 | 0.810809 | 9.58E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene90462 | 0.806381 | 8.46E-50 | -1.69E-46 |
| MS.gene056514 | MS.gene90462 | 0.819262 | 1.27E-52 | -1.69E-46 |
| MS.gene056659 | MS.gene90462 | 0.801438 | 9.00E-49 | -1.69E-46 |
| MS.gene056902 | MS.gene90462 | 0.803887 | 2.81E-49 | -1.69E-46 |
| MS.gene057019 | MS.gene90462 | 0.837408 | 5.29E-57 | -1.69E-46 |
| MS.gene057124 | MS.gene90462 | 0.838541 | 2.70E-57 | -1.69E-46 |
| MS.gene057289 | MS.gene90462 | 0.841801 | 3.81E-58 | -1.69E-46 |
| MS.gene057734 | MS.gene90462 | 0.80863 | 2.82E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene90462 | 0.819092 | 1.39E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene90462 | 0.829065 | 6.34E-55 | -1.69E-46 |
| MS.gene058007 | MS.gene90462 | 0.82493 | 6.18E-54 | -1.69E-46 |
| MS.gene058090 | MS.gene90462 | 0.812357 | 4.42E-51 | -1.69E-46 |
| MS.gene058120 | MS.gene90462 | 0.871268 | 7.78E-67 | -1.69E-46 |
| MS.gene058376 | MS.gene90462 | 0.804597 | 2.00E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene90462 | 0.820982 | 5.14E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene90462 | 0.895146 | 1.26E-75 | -1.69E-46 |
| MS.gene058948 | MS.gene90462 | 0.911174 | 8.19E-83 | -1.69E-46 |
| MS.gene058949 | MS.gene90462 | 0.813295 | 2.75E-51 | -1.69E-46 |
| MS.gene059129 | MS.gene90462 | 0.807107 | 5.94E-50 | -1.69E-46 |
| MS.gene059368 | MS.gene90462 | 0.802836 | 4.64E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene90462 | 0.844552 | 7.04E-59 | -1.69E-46 |
| MS.gene059674 | MS.gene90462 | 0.813384 | 2.63E-51 | -1.69E-46 |
| MS.gene059680 | MS.gene90462 | 0.810323 | 1.22E-50 | -1.69E-46 |
| MS.gene059711 | MS.gene90462 | 0.805103 | 1.57E-49 | -1.69E-46 |
| MS.gene059946 | MS.gene90462 | 0.823789 | 1.15E-53 | -1.69E-46 |
| MS.gene060372 | MS.gene90462 | 0.861584 | 9.26E-64 | -1.69E-46 |
| MS.gene060835 | MS.gene90462 | 0.802256 | 6.12E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene90462 | 0.881479 | 2.32E-70 | -1.69E-46 |
| MS.gene061154 | MS.gene90462 | 0.840568 | 8.04E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90462 | MS.gene89039 | PPI |
| MS.gene90462 | MS.gene064391 | PPI |
| MS.gene035831 | MS.gene90462 | PPI |
| MS.gene90462 | MS.gene86378 | PPI |
| MS.gene043599 | MS.gene90462 | PPI |
| MS.gene90462 | MS.gene060874 | PPI |
| MS.gene90462 | MS.gene36218 | PPI |
| MS.gene36217 | MS.gene90462 | PPI |
| MS.gene90462 | MS.gene064361 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90462.t1 | MTR_4g094985 | 96.618 | 828 | 18 | 3 | 1 | 828 | 1 | 818 | 0.0 | 1627 |
| MS.gene90462.t1 | MTR_2g036380 | 28.257 | 637 | 389 | 14 | 162 | 790 | 27 | 603 | 1.71e-63 | 227 |
| MS.gene90462.t1 | MTR_2g036380 | 28.257 | 637 | 389 | 14 | 162 | 790 | 117 | 693 | 8.58e-63 | 227 |
| MS.gene90462.t1 | MTR_2g036380 | 28.647 | 569 | 346 | 12 | 228 | 790 | 27 | 541 | 2.51e-57 | 209 |
| MS.gene90462.t1 | MTR_2g036380 | 28.957 | 556 | 335 | 12 | 241 | 790 | 9 | 510 | 8.37e-57 | 206 |
| MS.gene90462.t1 | MTR_4g127580 | 26.357 | 645 | 397 | 12 | 161 | 785 | 109 | 695 | 3.06e-56 | 210 |
| MS.gene90462.t1 | MTR_4g094232 | 29.524 | 525 | 330 | 13 | 264 | 779 | 390 | 883 | 5.91e-54 | 202 |
| MS.gene90462.t1 | MTR_5g010420 | 29.374 | 623 | 376 | 21 | 172 | 768 | 362 | 946 | 7.49e-47 | 181 |
| MS.gene90462.t1 | MTR_8g079250 | 27.885 | 624 | 385 | 19 | 173 | 768 | 369 | 955 | 2.13e-44 | 173 |
| MS.gene90462.t1 | MTR_3g105190 | 29.119 | 522 | 322 | 11 | 264 | 764 | 354 | 848 | 2.18e-42 | 167 |
| MS.gene90462.t1 | MTR_8g012390 | 28.519 | 547 | 310 | 16 | 247 | 764 | 420 | 914 | 1.12e-41 | 165 |
| MS.gene90462.t1 | MTR_2g035840 | 25.209 | 718 | 417 | 20 | 122 | 768 | 287 | 955 | 1.84e-39 | 158 |
| MS.gene90462.t1 | MTR_4g094695 | 25.278 | 720 | 419 | 21 | 122 | 768 | 283 | 956 | 8.28e-39 | 156 |
| MS.gene90462.t1 | MTR_8g079250 | 26.386 | 523 | 329 | 16 | 173 | 674 | 369 | 856 | 2.46e-30 | 129 |
| MS.gene90462.t1 | MTR_3g105190 | 27.896 | 423 | 260 | 8 | 264 | 666 | 354 | 751 | 2.89e-30 | 128 |
| MS.gene90462.t1 | MTR_8g012390 | 26.477 | 457 | 258 | 13 | 247 | 674 | 420 | 827 | 7.05e-28 | 121 |
| MS.gene90462.t1 | MTR_8g079250 | 29.642 | 307 | 195 | 8 | 173 | 464 | 369 | 669 | 2.84e-24 | 109 |
| MS.gene90462.t1 | MTR_7g100110 | 27.053 | 207 | 109 | 7 | 606 | 771 | 638 | 843 | 4.69e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90462.t1 | AT4G37270 | 76.170 | 705 | 167 | 1 | 105 | 809 | 102 | 805 | 0.0 | 1095 |
| MS.gene90462.t1 | AT4G30110 | 25.000 | 652 | 418 | 15 | 151 | 790 | 104 | 696 | 1.25e-52 | 198 |
| MS.gene90462.t1 | AT4G30110 | 25.000 | 652 | 418 | 15 | 151 | 790 | 104 | 696 | 1.25e-52 | 198 |
| MS.gene90462.t1 | AT5G21930 | 30.256 | 585 | 348 | 16 | 210 | 764 | 286 | 840 | 1.27e-51 | 195 |
| MS.gene90462.t1 | AT5G21930 | 30.256 | 585 | 348 | 16 | 210 | 764 | 286 | 840 | 1.27e-51 | 195 |
| MS.gene90462.t1 | AT2G19110 | 25.806 | 620 | 385 | 16 | 185 | 790 | 147 | 705 | 2.96e-51 | 195 |
| MS.gene90462.t1 | AT2G19110 | 25.806 | 620 | 385 | 16 | 185 | 790 | 147 | 705 | 2.96e-51 | 195 |
| MS.gene90462.t1 | AT2G19110 | 25.806 | 620 | 385 | 16 | 185 | 790 | 147 | 705 | 2.96e-51 | 195 |
| MS.gene90462.t1 | AT5G21930 | 30.474 | 548 | 322 | 15 | 210 | 727 | 286 | 804 | 1.15e-48 | 186 |
| MS.gene90462.t1 | AT4G33520 | 28.916 | 581 | 361 | 18 | 210 | 779 | 353 | 892 | 9.34e-48 | 184 |
| MS.gene90462.t1 | AT4G33520 | 29.094 | 574 | 361 | 18 | 210 | 771 | 353 | 892 | 1.68e-47 | 183 |
| MS.gene90462.t1 | AT5G44790 | 25.994 | 704 | 422 | 20 | 122 | 766 | 293 | 956 | 1.12e-44 | 174 |
| MS.gene90462.t1 | AT1G63440 | 28.185 | 628 | 378 | 19 | 172 | 768 | 369 | 954 | 5.81e-44 | 172 |
| MS.gene90462.t1 | AT5G21930 | 28.718 | 585 | 334 | 18 | 210 | 764 | 286 | 817 | 2.29e-41 | 163 |
| MS.gene90462.t1 | AT4G30120 | 26.410 | 390 | 236 | 10 | 166 | 547 | 129 | 475 | 1.17e-31 | 131 |
| MS.gene90462.t1 | AT4G30120 | 26.836 | 354 | 213 | 9 | 202 | 547 | 1 | 316 | 4.32e-30 | 123 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAGAGGTTTGATAGAAAT+TGG | 0.118156 | 8.3:-23106720 | None:intergenic |
| GGCTTCCCTTCCGTCAGTTT+TGG | 0.178850 | 8.3:+23115202 | MS.gene90462:CDS |
| TCAATTGCTATTGCTGTTCT+TGG | 0.210359 | 8.3:+23109587 | MS.gene90462:CDS |
| GGCATTGTCTAGCATATTCT+TGG | 0.228426 | 8.3:+23115181 | MS.gene90462:CDS |
| AGTGAGCATCCATGTGTTAA+TGG | 0.260560 | 8.3:+23107315 | MS.gene90462:CDS |
| TGCCCTTATAATTAATAAAA+AGG | 0.279604 | 8.3:+23112565 | MS.gene90462:CDS |
| CAAAGGTGGCTGGATGAATT+TGG | 0.281364 | 8.3:+23109533 | MS.gene90462:CDS |
| TATGATTATGATTATGAGTA+TGG | 0.283908 | 8.3:-23106815 | None:intergenic |
| TCCAGCCACCTTTGAAGTTT+AGG | 0.293991 | 8.3:-23109524 | None:intergenic |
| CGACCAGAATGAACGAGTTT+TGG | 0.294272 | 8.3:-23107079 | None:intergenic |
| GCTATTAATGCATCTTCTTA+TGG | 0.295250 | 8.3:+23112524 | MS.gene90462:CDS |
| GGATTTGATTCTTGTGGTTT+TGG | 0.298046 | 8.3:-23106667 | None:intergenic |
| ACCATTGCATTTGATAAAAC+AGG | 0.313148 | 8.3:+23111454 | MS.gene90462:CDS |
| GTCAATCCATTTGGTAGCTT+TGG | 0.315025 | 8.3:-23106946 | None:intergenic |
| GCAACTTATCTTCAGGCTTC+AGG | 0.315496 | 8.3:-23113685 | None:intergenic |
| TATTTGAAATCAAATGTATT+AGG | 0.327072 | 8.3:-23108167 | None:intergenic |
| TCAAGAACAAGTGCAAATTC+TGG | 0.329012 | 8.3:-23108125 | None:intergenic |
| ATGTTTAATCTTGCACATAT+TGG | 0.331244 | 8.3:+23107400 | MS.gene90462:CDS |
| TGGTCGCATTTCCGTTGGTT+GGG | 0.332817 | 8.3:+23107096 | MS.gene90462:CDS |
| ACTCAAAGGTGGACATGTTC+TGG | 0.334899 | 8.3:+23111411 | MS.gene90462:CDS |
| AGAGAGGTTTGATAGAAATT+GGG | 0.342658 | 8.3:-23106719 | None:intergenic |
| AAGGCAATTGAGCCTGTTTA+CGG | 0.342799 | 8.3:+23111505 | MS.gene90462:CDS |
| AAAGGATATCTCAAGAGATA+TGG | 0.345113 | 8.3:+23113715 | MS.gene90462:CDS |
| TGTCCAAAACTCGTTCATTC+TGG | 0.352789 | 8.3:+23107076 | MS.gene90462:CDS |
| GGTTCTATCTACAGAGCCTT+AGG | 0.363004 | 8.3:+23110339 | MS.gene90462:CDS |
| GACAGGTTTGATGAGTGATT+TGG | 0.363726 | 8.3:-23107057 | None:intergenic |
| AAAGTTGGAGATAGAGTTCC+TGG | 0.368979 | 8.3:+23108640 | MS.gene90462:CDS |
| CACTTGCTGCTGCAACTGTT+GGG | 0.374065 | 8.3:+23114898 | MS.gene90462:CDS |
| CTGTAATATATCATGCTTCC+AGG | 0.374765 | 8.3:-23115734 | None:intergenic |
| TGAAGTTGTCTGCCGAGATT+TGG | 0.379930 | 8.3:-23115015 | None:intergenic |
| CATGATATATTACAGTTGAT+TGG | 0.380717 | 8.3:+23115742 | MS.gene90462:CDS |
| TGCCTTGGCTGTGGCTCCAT+TGG | 0.384104 | 8.3:+23110386 | MS.gene90462:CDS |
| AATCTAGACTCTCCTCTCTT+AGG | 0.385080 | 8.3:+23115773 | MS.gene90462:CDS |
| TATGATTATGAGTATGGTTA+TGG | 0.386196 | 8.3:-23106809 | None:intergenic |
| ATGATGGAGAATGAGGAATT+TGG | 0.390636 | 8.3:-23106748 | None:intergenic |
| CTGGTCGCATTTCCGTTGGT+TGG | 0.392485 | 8.3:+23107095 | MS.gene90462:CDS |
| AGTGAGTGGAATTTGGTAGA+AGG | 0.406840 | 8.3:-23106633 | None:intergenic |
| ACATGACGCAACTTATCTTC+AGG | 0.418228 | 8.3:-23113692 | None:intergenic |
| ATTCGCTAGGTCAATCCATT+TGG | 0.420166 | 8.3:-23106955 | None:intergenic |
| GCACTTGCTGCTGCAACTGT+TGG | 0.421771 | 8.3:+23114897 | MS.gene90462:CDS |
| TCTCTTAGGACAAATATAAC+AGG | 0.423503 | 8.3:+23115787 | MS.gene90462:CDS |
| ATTACCATTGAGCACTTGAC+AGG | 0.431899 | 8.3:+23108595 | MS.gene90462:CDS |
| ACAGGTTTGATGAGTGATTT+GGG | 0.433483 | 8.3:-23107056 | None:intergenic |
| TGTTGCGGCAGCCATGGAAA+AGG | 0.442091 | 8.3:+23111600 | MS.gene90462:CDS |
| CTAATGCGATGACCGTAAAC+AGG | 0.447398 | 8.3:-23111517 | None:intergenic |
| ACAGTTGCAGCAGCAAGTGC+TGG | 0.448739 | 8.3:-23114894 | None:intergenic |
| GTGAGTGGAATTTGGTAGAA+GGG | 0.450947 | 8.3:-23106632 | None:intergenic |
| TTGGTCCACTTGTATTTAAG+TGG | 0.454297 | 8.3:+23109606 | MS.gene90462:CDS |
| TTTGAGTACTTTCCTGGTAG+AGG | 0.454663 | 8.3:+23112038 | MS.gene90462:CDS |
| TACTGGTGGACTTGTATTCA+AGG | 0.458170 | 8.3:+23111486 | MS.gene90462:CDS |
| ACCCAAGTGATGCTTTCAAT+AGG | 0.465409 | 8.3:-23112442 | None:intergenic |
| AGGAACTCTATCTCCAACTT+TGG | 0.466602 | 8.3:-23108638 | None:intergenic |
| GGTTGATGTTAAAGAGTTGA+AGG | 0.467608 | 8.3:+23108094 | MS.gene90462:CDS |
| CTGGAGGATAGGCCTCGTCC+AGG | 0.469698 | 8.3:+23113536 | MS.gene90462:CDS |
| TCAAAATGATACCTTCCAAT+GGG | 0.470455 | 8.3:-23111634 | None:intergenic |
| ACCTAAACTTCAAAGGTGGC+TGG | 0.472188 | 8.3:+23109523 | MS.gene90462:CDS |
| TTGCATTCCCACCTGTGAAA+AGG | 0.475193 | 8.3:+23111567 | MS.gene90462:CDS |
| ATTTCTTCCATTGTGGATAA+CGG | 0.475920 | 8.3:+23115226 | MS.gene90462:CDS |
| GGTCGCATTTCCGTTGGTTG+GGG | 0.477467 | 8.3:+23107097 | MS.gene90462:CDS |
| AAACCTCTGGAGGCCAAAGT+TGG | 0.479488 | 8.3:+23108625 | MS.gene90462:CDS |
| TGCAGCATCACCATGTGCCT+TGG | 0.480763 | 8.3:+23110371 | MS.gene90462:CDS |
| GTATTTCACAAGTCGTTCAA+TGG | 0.480835 | 8.3:+23108073 | MS.gene90462:CDS |
| TGGAGGATAGGCCTCGTCCA+GGG | 0.482722 | 8.3:+23113537 | MS.gene90462:CDS |
| TTCCGTGTGATGATGTTAAC+TGG | 0.483577 | 8.3:+23113599 | MS.gene90462:CDS |
| ATCACCATGTGCCTTGGCTG+TGG | 0.483615 | 8.3:+23110377 | MS.gene90462:CDS |
| AACAACGAAGTTTATGATGA+TGG | 0.484541 | 8.3:-23106764 | None:intergenic |
| GTTTCGCCAAAGCTACCAAA+TGG | 0.487686 | 8.3:+23106940 | MS.gene90462:CDS |
| GGCGGTGCAAGGAACATAGA+TGG | 0.488667 | 8.3:+23108661 | MS.gene90462:CDS |
| TCCAAAACTTGTTACCTCTC+CGG | 0.488744 | 8.3:-23108243 | None:intergenic |
| CTGGACGAGGCCTATCCTCC+AGG | 0.491201 | 8.3:-23113535 | None:intergenic |
| GTGGGATCATATGTCCTTGT+TGG | 0.491264 | 8.3:+23108218 | MS.gene90462:CDS |
| CGTTGATTCACCTGGAGGAT+AGG | 0.491810 | 8.3:+23113525 | MS.gene90462:CDS |
| CATTCTGGTCGCATTTCCGT+TGG | 0.493184 | 8.3:+23107091 | MS.gene90462:CDS |
| TAAATGAACCATCCTGGTCC+TGG | 0.493505 | 8.3:+23115716 | MS.gene90462:CDS |
| GAAATTGGGGATGTGCGAAT+AGG | 0.494228 | 8.3:-23106705 | None:intergenic |
| GGCTTAATTATGGTTGGTGA+AGG | 0.494682 | 8.3:+23114858 | MS.gene90462:CDS |
| ATCGATGATGCGAATCTCAC+TGG | 0.494904 | 8.3:+23106897 | MS.gene90462:CDS |
| TGGTTCATTTAAACCACGTA+TGG | 0.495446 | 8.3:-23115704 | None:intergenic |
| AATAGGAAAAGCGAGGTTAG+AGG | 0.496704 | 8.3:-23106688 | None:intergenic |
| TGGGGAACGCTTTGGAAGGA+GGG | 0.501834 | 8.3:+23107365 | MS.gene90462:CDS |
| GATGTGAAGTGAGTGGAATT+TGG | 0.503063 | 8.3:-23106640 | None:intergenic |
| GTTGCGGCAGCCATGGAAAA+GGG | 0.505287 | 8.3:+23111601 | MS.gene90462:CDS |
| GTTAGAGGATTTGATTCTTG+TGG | 0.505400 | 8.3:-23106673 | None:intergenic |
| AGTGATTTGGGCAAAGTATG+AGG | 0.506012 | 8.3:-23107044 | None:intergenic |
| TTCAAAATGATACCTTCCAA+TGG | 0.509760 | 8.3:-23111635 | None:intergenic |
| TCATATGTCCTTGTTGGTGC+CGG | 0.510228 | 8.3:+23108224 | MS.gene90462:CDS |
| AGGAATTTGGAAGAATAGAG+AGG | 0.513522 | 8.3:-23106735 | None:intergenic |
| GATTAAGCAAAATGTAGCTC+TGG | 0.514025 | 8.3:+23115160 | MS.gene90462:intron |
| AAGGATATCTCAAGAGATAT+GGG | 0.514882 | 8.3:+23113716 | MS.gene90462:CDS |
| TGCTGTTAACAGTAGCAGTA+AGG | 0.516956 | 8.3:-23112061 | None:intergenic |
| AACCTATTGAAAGCATCACT+TGG | 0.517138 | 8.3:+23112440 | MS.gene90462:CDS |
| CTACAGAGCCTTAGGGCTCA+TGG | 0.522521 | 8.3:+23110347 | MS.gene90462:CDS |
| CGGTCATCGCATTAGAAACA+AGG | 0.525626 | 8.3:+23111525 | MS.gene90462:CDS |
| AAAGGAAGCTCTTGCTGTTG+CGG | 0.526765 | 8.3:+23111585 | MS.gene90462:CDS |
| TTCCCCTGTCAAGTGCTCAA+TGG | 0.526856 | 8.3:-23108599 | None:intergenic |
| AGATAAGTTGCGTCATGTAA+AGG | 0.529752 | 8.3:+23113697 | MS.gene90462:CDS |
| ATGGGGAACGCTTTGGAAGG+AGG | 0.530613 | 8.3:+23107364 | MS.gene90462:CDS |
| TCTTGCTGTTGCGGCAGCCA+TGG | 0.531269 | 8.3:+23111594 | MS.gene90462:CDS |
| GTTATGATCGGTGTGATTTG+CGG | 0.532890 | 8.3:-23106787 | None:intergenic |
| GAGAGGTTTGATAGAAATTG+GGG | 0.535581 | 8.3:-23106718 | None:intergenic |
| GTTTATGATGATGGAGAATG+AGG | 0.537798 | 8.3:-23106755 | None:intergenic |
| TCTCCAACTTTGGCCTCCAG+AGG | 0.537839 | 8.3:-23108628 | None:intergenic |
| TTTGTTGATGCAGCTTGCAG+AGG | 0.543905 | 8.3:+23110318 | MS.gene90462:intron |
| TATCGTGGACAGGAACCCTC+TGG | 0.544668 | 8.3:-23108190 | None:intergenic |
| TATATCATGCTTCCAGGACC+AGG | 0.545479 | 8.3:-23115728 | None:intergenic |
| GACAGGGGAAGTCAAACCTC+TGG | 0.545837 | 8.3:+23108612 | MS.gene90462:CDS |
| GCAGGTCACGTTGATTCACC+TGG | 0.549731 | 8.3:+23113517 | MS.gene90462:intron |
| TGGAAAACTTCACAATCTAC+AGG | 0.552595 | 8.3:-23108559 | None:intergenic |
| ATCTCGGCAGACAACTTCAC+TGG | 0.558427 | 8.3:+23115019 | MS.gene90462:CDS |
| AAGGGCACTACCCACCCCAT+TGG | 0.559044 | 8.3:+23111619 | MS.gene90462:CDS |
| CATTCTGTATTGCCAAATCT+CGG | 0.561945 | 8.3:+23115003 | MS.gene90462:CDS |
| TATATTACAGTTGATTGGCA+AGG | 0.564000 | 8.3:+23115747 | MS.gene90462:CDS |
| TGAATAGACCTAAACTTCAA+AGG | 0.565264 | 8.3:+23109516 | MS.gene90462:CDS |
| GTACCTGGTGTACTAAAGAA+TGG | 0.569445 | 8.3:-23109629 | None:intergenic |
| CGAGATTTGGCAATACAGAA+TGG | 0.570862 | 8.3:-23115002 | None:intergenic |
| ATGATACCTTCCAATGGGGT+GGG | 0.570870 | 8.3:-23111629 | None:intergenic |
| AATGATACCTTCCAATGGGG+TGG | 0.571569 | 8.3:-23111630 | None:intergenic |
| CCCACAGTTATATCGTGGAC+AGG | 0.573819 | 8.3:-23108200 | None:intergenic |
| GTTCTATCTACAGAGCCTTA+GGG | 0.574940 | 8.3:+23110340 | MS.gene90462:CDS |
| CCATTGCATTTGATAAAACA+GGG | 0.581955 | 8.3:+23111455 | MS.gene90462:CDS |
| ATAGAGTTCCTGGCGGTGCA+AGG | 0.582278 | 8.3:+23108650 | MS.gene90462:CDS |
| GTTTGTCTCAACTCCATACG+TGG | 0.582771 | 8.3:+23115691 | MS.gene90462:CDS |
| TCTATGTTCCTTGCACCGCC+AGG | 0.583235 | 8.3:-23108658 | None:intergenic |
| TGCTGCAACCATGAGCCCTA+AGG | 0.586386 | 8.3:-23110355 | None:intergenic |
| TGCTACTGTTAACAGCATTG+AGG | 0.587811 | 8.3:+23112067 | MS.gene90462:CDS |
| TGCACAGGAGCTGATTGCTG+TGG | 0.588322 | 8.3:-23110415 | None:intergenic |
| AAAACAGGGACATTGACTAC+TGG | 0.589422 | 8.3:+23111469 | MS.gene90462:CDS |
| TAAAATGAATTGCAGGGCTG+TGG | 0.592347 | 8.3:+23111968 | MS.gene90462:intron |
| TGGCCATTCTTTAGTACACC+AGG | 0.592719 | 8.3:+23109626 | MS.gene90462:CDS |
| GAAATCCCAAAACTGACGGA+AGG | 0.592946 | 8.3:-23115208 | None:intergenic |
| TTACCATTGAGCACTTGACA+GGG | 0.593656 | 8.3:+23108596 | MS.gene90462:CDS |
| GGAGGATAGGCCTCGTCCAG+GGG | 0.594240 | 8.3:+23113538 | MS.gene90462:CDS |
| ACAGGGACATTGACTACTGG+TGG | 0.595895 | 8.3:+23111472 | MS.gene90462:CDS |
| TTGTTATAGTCAGGAGCTGG+AGG | 0.596664 | 8.3:+23112413 | MS.gene90462:intron |
| GTGGTTTAAATGAACCATCC+TGG | 0.596951 | 8.3:+23115710 | MS.gene90462:CDS |
| AATGGCCACTTAAATACAAG+TGG | 0.597154 | 8.3:-23109611 | None:intergenic |
| TTTATGGGGAACGCTTTGGA+AGG | 0.597574 | 8.3:+23107361 | MS.gene90462:CDS |
| GCTCTCTCAAGAAATTCGCT+AGG | 0.601109 | 8.3:-23106968 | None:intergenic |
| TAGTTTCTTACCCCAACCAA+CGG | 0.601581 | 8.3:-23107107 | None:intergenic |
| TGGTAATTGTGGCACCGCCG+TGG | 0.601583 | 8.3:-23108579 | None:intergenic |
| GTAGCAGTAAGGCCTCTACC+AGG | 0.601894 | 8.3:-23112050 | None:intergenic |
| ACCTATTGAAAGCATCACTT+GGG | 0.602175 | 8.3:+23112441 | MS.gene90462:CDS |
| CATCCATGTGTTAATGGCAA+TGG | 0.607256 | 8.3:+23107321 | MS.gene90462:CDS |
| TGCCAATGGAGCCACAGCCA+AGG | 0.608775 | 8.3:-23110388 | None:intergenic |
| TGTTATATTTGTCCTAAGAG+AGG | 0.609994 | 8.3:-23115785 | None:intergenic |
| TGGTGTGGATGTGAAGTGAG+TGG | 0.610521 | 8.3:-23106647 | None:intergenic |
| CTGCCATTGCCATTAACACA+TGG | 0.611691 | 8.3:-23107324 | None:intergenic |
| CATCACAGGTAACAAAGACA+TGG | 0.612204 | 8.3:+23109444 | MS.gene90462:intron |
| ATTGCTGTGGCATATGCCAA+TGG | 0.613253 | 8.3:-23110402 | None:intergenic |
| CTGTGGTTGAACATAGTGAA+GGG | 0.614550 | 8.3:+23111985 | MS.gene90462:CDS |
| GCACTACCCACCCCATTGGA+AGG | 0.620348 | 8.3:+23111623 | MS.gene90462:CDS |
| ATTTGATTTCAAATACCAGA+GGG | 0.624066 | 8.3:+23108175 | MS.gene90462:CDS |
| AAATCCCAAAACTGACGGAA+GGG | 0.625234 | 8.3:-23115207 | None:intergenic |
| ATGCAGGTTCTCTTACATGA+AGG | 0.625523 | 8.3:+23115655 | MS.gene90462:intron |
| GGAGCCACAGCCAAGGCACA+TGG | 0.627092 | 8.3:-23110381 | None:intergenic |
| TGTCATACCGTTATCCACAA+TGG | 0.627678 | 8.3:-23115233 | None:intergenic |
| CTACACACATCACAAATTCG+CGG | 0.629168 | 8.3:-23115827 | None:intergenic |
| GCGTTACAGCAAAGTTGTTG+TGG | 0.631820 | 8.3:+23109559 | MS.gene90462:CDS |
| AAGAGAGTTGCAAGTGCTGT+GGG | 0.633487 | 8.3:+23113641 | MS.gene90462:CDS |
| TTGCAGGGCATATTACTCAA+AGG | 0.636255 | 8.3:+23111397 | MS.gene90462:intron |
| AAAGAGAGTTGCAAGTGCTG+TGG | 0.636430 | 8.3:+23113640 | MS.gene90462:CDS |
| GCTGTGGTTGAACATAGTGA+AGG | 0.636595 | 8.3:+23111984 | MS.gene90462:CDS |
| ACAGGTAACAAAGACATGGA+AGG | 0.636600 | 8.3:+23109448 | MS.gene90462:intron |
| TTACCTCTCCGGCACCAACA+AGG | 0.637057 | 8.3:-23108232 | None:intergenic |
| CAGGGCATATTACTCAAAGG+TGG | 0.637638 | 8.3:+23111400 | MS.gene90462:intron |
| TCCTGTCCACGATATAACTG+TGG | 0.638620 | 8.3:+23108199 | MS.gene90462:CDS |
| CCTGTCCACGATATAACTGT+GGG | 0.640509 | 8.3:+23108200 | MS.gene90462:CDS |
| TGTCCTTGTTGGTGCCGGAG+AGG | 0.641083 | 8.3:+23108229 | MS.gene90462:CDS |
| AGATGGTAGAATAATTGTGA+AGG | 0.643350 | 8.3:+23108678 | MS.gene90462:CDS |
| TCATGCTTCCAGGACCAGGA+TGG | 0.644114 | 8.3:-23115724 | None:intergenic |
| GCTCTAATTGAAATGAGTGG+TGG | 0.647769 | 8.3:+23107289 | MS.gene90462:CDS |
| ATGATCCCACAGTTATATCG+TGG | 0.648538 | 8.3:-23108205 | None:intergenic |
| AGTATGGTTATGGTTATGAT+CGG | 0.651815 | 8.3:-23106799 | None:intergenic |
| GGAAGAAATCCCAAAACTGA+CGG | 0.653538 | 8.3:-23115212 | None:intergenic |
| CACCAGTTAACATCATCACA+CGG | 0.657313 | 8.3:-23113601 | None:intergenic |
| CATTTGATTTCAAATACCAG+AGG | 0.660551 | 8.3:+23108174 | MS.gene90462:CDS |
| TACCATTGAGCACTTGACAG+GGG | 0.669528 | 8.3:+23108597 | MS.gene90462:CDS |
| GGAGTTGAGACAAACAAGCA+AGG | 0.669963 | 8.3:-23115683 | None:intergenic |
| ATAGACCTAAACTTCAAAGG+TGG | 0.670685 | 8.3:+23109519 | MS.gene90462:CDS |
| AGGGGAAGTCAAACCTCTGG+AGG | 0.671091 | 8.3:+23108615 | MS.gene90462:CDS |
| CAGGTTCTCTTACATGAAGG+CGG | 0.671593 | 8.3:+23115658 | MS.gene90462:intron |
| CAAGTGCTCAATGGTAATTG+TGG | 0.696113 | 8.3:-23108590 | None:intergenic |
| GATGCTCTAATTGAAATGAG+TGG | 0.707083 | 8.3:+23107286 | MS.gene90462:CDS |
| CAAAATGATACCTTCCAATG+GGG | 0.711661 | 8.3:-23111633 | None:intergenic |
| TTTCAACAGAGACAGAAGGG+AGG | 0.724915 | 8.3:-23112013 | None:intergenic |
| GGTCACGTTGATTCACCTGG+AGG | 0.730026 | 8.3:+23113520 | MS.gene90462:intron |
| ATGTGCGAATAGGAAAAGCG+AGG | 0.738586 | 8.3:-23106695 | None:intergenic |
| GTTGGAGATAGAGTTCCTGG+CGG | 0.796828 | 8.3:+23108643 | MS.gene90462:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 23106609 | 23115840 | 23106609 | ID=MS.gene90462 |
| chr8.3 | mRNA | 23106609 | 23115840 | 23106609 | ID=MS.gene90462.t1;Parent=MS.gene90462 |
| chr8.3 | exon | 23106609 | 23107118 | 23106609 | ID=MS.gene90462.t1.exon1;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23106609 | 23107118 | 23106609 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23107271 | 23107421 | 23107271 | ID=MS.gene90462.t1.exon2;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23107271 | 23107421 | 23107271 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23108066 | 23108250 | 23108066 | ID=MS.gene90462.t1.exon3;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23108066 | 23108250 | 23108066 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23108553 | 23108699 | 23108553 | ID=MS.gene90462.t1.exon4;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23108553 | 23108699 | 23108553 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23109452 | 23109647 | 23109452 | ID=MS.gene90462.t1.exon5;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23109452 | 23109647 | 23109452 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23110331 | 23110443 | 23110331 | ID=MS.gene90462.t1.exon6;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23110331 | 23110443 | 23110331 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23111403 | 23111644 | 23111403 | ID=MS.gene90462.t1.exon7;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23111403 | 23111644 | 23111403 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23111983 | 23112088 | 23111983 | ID=MS.gene90462.t1.exon8;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23111983 | 23112088 | 23111983 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23112422 | 23112586 | 23112422 | ID=MS.gene90462.t1.exon9;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23112422 | 23112586 | 23112422 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23113521 | 23113737 | 23113521 | ID=MS.gene90462.t1.exon10;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23113521 | 23113737 | 23113521 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23114853 | 23115040 | 23114853 | ID=MS.gene90462.t1.exon11;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23114853 | 23115040 | 23114853 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23115161 | 23115247 | 23115161 | ID=MS.gene90462.t1.exon12;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23115161 | 23115247 | 23115161 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| chr8.3 | exon | 23115661 | 23115840 | 23115661 | ID=MS.gene90462.t1.exon13;Parent=MS.gene90462.t1 |
| chr8.3 | CDS | 23115661 | 23115840 | 23115661 | ID=cds.MS.gene90462.t1;Parent=MS.gene90462.t1 |
| Gene Sequence |
| Protein sequence |
