Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90716.t1 | XP_003589322.2 | 99 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 9.00E-109 | 402.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90716.t1 | Q6ZRR5 | 26.6 | 192 | 139 | 2 | 9 | 198 | 9 | 200 | 1.8e-17 | 90.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90716.t1 | G7I5C1 | 99.0 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 6.5e-109 | 402.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene90716 | 0.82309 | 1.67E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene90716 | 0.80603 | 1.00E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene90716 | -0.800176 | 1.63E-48 | -1.69E-46 |
| MS.gene050499 | MS.gene90716 | 0.822553 | 2.23E-53 | -1.69E-46 |
| MS.gene050520 | MS.gene90716 | 0.81682 | 4.54E-52 | -1.69E-46 |
| MS.gene050662 | MS.gene90716 | 0.820535 | 6.52E-53 | -1.69E-46 |
| MS.gene050686 | MS.gene90716 | 0.808656 | 2.78E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene90716 | 0.845607 | 3.65E-59 | -1.69E-46 |
| MS.gene051694 | MS.gene90716 | 0.805973 | 1.03E-49 | -1.69E-46 |
| MS.gene051858 | MS.gene90716 | 0.841807 | 3.80E-58 | -1.69E-46 |
| MS.gene052916 | MS.gene90716 | 0.814443 | 1.54E-51 | -1.69E-46 |
| MS.gene053018 | MS.gene90716 | 0.835816 | 1.35E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene90716 | 0.816359 | 5.76E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene90716 | 0.805227 | 1.48E-49 | -1.69E-46 |
| MS.gene053505 | MS.gene90716 | 0.804071 | 2.58E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene90716 | 0.82428 | 8.79E-54 | -1.69E-46 |
| MS.gene053813 | MS.gene90716 | 0.808395 | 3.16E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene90716 | 0.824577 | 7.49E-54 | -1.69E-46 |
| MS.gene055224 | MS.gene90716 | 0.817787 | 2.75E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene90716 | 0.833884 | 4.13E-56 | -1.69E-46 |
| MS.gene05592 | MS.gene90716 | 0.811149 | 8.09E-51 | -1.69E-46 |
| MS.gene056422 | MS.gene90716 | 0.803167 | 3.97E-49 | -1.69E-46 |
| MS.gene056448 | MS.gene90716 | 0.815328 | 9.78E-52 | -1.69E-46 |
| MS.gene057331 | MS.gene90716 | 0.805499 | 1.30E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene90716 | 0.806024 | 1.01E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene90716 | 0.826581 | 2.51E-54 | -1.69E-46 |
| MS.gene058323 | MS.gene90716 | 0.809943 | 1.47E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene90716 | 0.804541 | 2.06E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene90716 | 0.817956 | 2.52E-52 | -1.69E-46 |
| MS.gene059711 | MS.gene90716 | 0.825694 | 4.08E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene90716 | 0.803623 | 3.19E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene90716 | 0.835193 | 1.93E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene90716 | 0.849846 | 2.49E-60 | -1.69E-46 |
| MS.gene060837 | MS.gene90716 | 0.839954 | 1.16E-57 | -1.69E-46 |
| MS.gene061134 | MS.gene90716 | 0.806564 | 7.74E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene90716 | 0.807729 | 4.38E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24238 | MS.gene90716 | PPI |
| MS.gene90716 | MS.gene27261 | PPI |
| MS.gene90716 | MS.gene24238 | PPI |
| MS.gene26999 | MS.gene90716 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90716.t1 | MTR_1g022950 | 99.000 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 4.79e-149 | 414 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90716.t1 | AT1G35180 | 63.184 | 201 | 72 | 1 | 2 | 200 | 3 | 203 | 5.37e-96 | 279 |
| MS.gene90716.t1 | AT1G35170 | 64.865 | 185 | 65 | 0 | 16 | 200 | 19 | 203 | 6.43e-91 | 266 |
| MS.gene90716.t1 | AT1G45010 | 61.275 | 204 | 77 | 1 | 2 | 203 | 3 | 206 | 6.56e-87 | 256 |
| MS.gene90716.t1 | AT1G35170 | 62.431 | 181 | 68 | 0 | 16 | 196 | 19 | 199 | 6.52e-85 | 251 |
| MS.gene90716.t1 | AT1G45010 | 56.938 | 209 | 88 | 1 | 2 | 208 | 3 | 211 | 4.65e-82 | 243 |
| MS.gene90716.t1 | AT1G35170 | 65.753 | 146 | 50 | 0 | 16 | 161 | 19 | 164 | 8.73e-72 | 216 |
| MS.gene90716.t1 | AT1G35170 | 65.753 | 146 | 50 | 0 | 16 | 161 | 19 | 164 | 8.73e-72 | 216 |
| MS.gene90716.t1 | AT1G45010 | 62.346 | 162 | 59 | 1 | 2 | 161 | 3 | 164 | 6.02e-69 | 208 |
| MS.gene90716.t1 | AT1G45010 | 63.846 | 130 | 47 | 0 | 74 | 203 | 1 | 130 | 8.94e-60 | 184 |
Find 46 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATCTGCAGTCAAATTA+AGG | 0.189859 | 1.4:+1634490 | None:intergenic |
| CTTGATGAGAAATGGGTTAT+TGG | 0.254552 | 1.4:+1633660 | None:intergenic |
| TTTGAAGCCACTGGACAAAT+TGG | 0.271253 | 1.4:+1635980 | None:intergenic |
| GAGAAATCAAATGAACGTTT+TGG | 0.301030 | 1.4:+1636079 | None:intergenic |
| GTCCCACAATGCTTACTAAA+TGG | 0.321372 | 1.4:+1635732 | None:intergenic |
| CTACTTTATCTGTTCAAGAT+TGG | 0.324800 | 1.4:-1636009 | MS.gene90716:CDS |
| TATTATACCTTGATGAGAAA+TGG | 0.337195 | 1.4:+1633652 | None:intergenic |
| ATTTGATCAGATGGAAGTTC+TGG | 0.337359 | 1.4:-1635834 | MS.gene90716:intron |
| CAGAGATGGTGGGAGCAGTA+TGG | 0.350230 | 1.4:-1634584 | MS.gene90716:CDS |
| CTATTACAGGCTATGGGATT+GGG | 0.371288 | 1.4:-1633515 | MS.gene90716:intron |
| ACATTTGCTAGGATGATGAT+TGG | 0.391517 | 1.4:-1633712 | MS.gene90716:CDS |
| TACATCTGCAGTCAAATTAA+GGG | 0.403745 | 1.4:+1634491 | None:intergenic |
| ACTATTACAGGCTATGGGAT+TGG | 0.407219 | 1.4:-1633516 | MS.gene90716:intron |
| ACAATAATTTAGGACGAGAT+TGG | 0.408350 | 1.4:-1633221 | MS.gene90716:intron |
| ATTATACCTTGATGAGAAAT+GGG | 0.416729 | 1.4:+1633653 | None:intergenic |
| AGCTCCCTCAAATGCAAGAA+TGG | 0.423674 | 1.4:+1634543 | None:intergenic |
| TTCAAATTCTTCTTACAGAC+AGG | 0.438036 | 1.4:-1635963 | MS.gene90716:intron |
| CAAGCCCATTCTTGCATTTG+AGG | 0.445389 | 1.4:-1634548 | MS.gene90716:CDS |
| TCTAAAGGAGCTTGGTTACA+AGG | 0.454047 | 1.4:-1634520 | MS.gene90716:CDS |
| GTTCATTTGATTTCTCCAAC+AGG | 0.463083 | 1.4:-1636072 | MS.gene90716:CDS |
| GCATTTGAGGGAGCTTCTAA+AGG | 0.464317 | 1.4:-1634535 | MS.gene90716:CDS |
| AAGCCCATTCTTGCATTTGA+GGG | 0.465855 | 1.4:-1634547 | MS.gene90716:CDS |
| CACCATTTAGTAAGCATTGT+GGG | 0.466117 | 1.4:-1635734 | MS.gene90716:CDS |
| CAATAACCCATTTCTCATCA+AGG | 0.469006 | 1.4:-1633659 | MS.gene90716:intron |
| CTTTGACTATTACAGGCTAT+GGG | 0.470683 | 1.4:-1633521 | MS.gene90716:intron |
| TATGGGATTGGGTTTGCAGC+TGG | 0.477409 | 1.4:-1633504 | MS.gene90716:intron |
| AGCATTGTGGGACTGATAGC+TGG | 0.478228 | 1.4:-1635722 | MS.gene90716:CDS |
| GCTCCCTCAAATGCAAGAAT+GGG | 0.481370 | 1.4:+1634544 | None:intergenic |
| AGGGAGCTTCTAAAGGAGCT+TGG | 0.499104 | 1.4:-1634528 | MS.gene90716:CDS |
| TAAGAAGAATTTGAAGCCAC+TGG | 0.506715 | 1.4:+1635971 | None:intergenic |
| AGCTGGCTTATGCTATCAAA+AGG | 0.510458 | 1.4:-1635705 | MS.gene90716:intron |
| CTTCAATATTTACATTTGCT+AGG | 0.511008 | 1.4:-1633723 | MS.gene90716:CDS |
| AGAGATGGTGGGAGCAGTAT+GGG | 0.512111 | 1.4:-1634583 | MS.gene90716:CDS |
| ATTCAAAAGACAATTGTGGT+TGG | 0.543048 | 1.4:-1636148 | MS.gene90716:CDS |
| GATCATAAATTAGATATGAC+AGG | 0.545515 | 1.4:+1635804 | None:intergenic |
| ATTGGAAGTTAATGTTACGT+AGG | 0.557867 | 1.4:+1633678 | None:intergenic |
| AATTGTAGAGACAATCCTGT+TGG | 0.571539 | 1.4:+1636057 | None:intergenic |
| GAAATGTCCAATTTGTCCAG+TGG | 0.588096 | 1.4:-1635987 | MS.gene90716:CDS |
| CCACAATGCTTACTAAATGG+TGG | 0.601229 | 1.4:+1635735 | None:intergenic |
| CCACCATTTAGTAAGCATTG+TGG | 0.612304 | 1.4:-1635735 | MS.gene90716:CDS |
| AATGTTACGTAGGTGATACA+AGG | 0.616770 | 1.4:+1633688 | None:intergenic |
| ATATATTCAAAAGACAATTG+TGG | 0.625016 | 1.4:-1636152 | MS.gene90716:CDS |
| ACATCTGCAGTCAAATTAAG+GGG | 0.627723 | 1.4:+1634492 | None:intergenic |
| TCAGTGTGGCTCAGAGATGG+TGG | 0.640532 | 1.4:-1634595 | MS.gene90716:intron |
| CAGTGTGGCTCAGAGATGGT+GGG | 0.652161 | 1.4:-1634594 | MS.gene90716:CDS |
| TGATCAGTGTGGCTCAGAGA+TGG | 0.653705 | 1.4:-1634598 | MS.gene90716:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTTTTAAAAATTT+TGG | + | chr1.4:1635471-1635490 | None:intergenic | 0.0% |
| !! | GTACAAAATAAATAAATATT+TGG | + | chr1.4:1634923-1634942 | None:intergenic | 10.0% |
| !! | TAATAATATAATATACTCAT+TGG | - | chr1.4:1635794-1635813 | MS.gene90716:CDS | 10.0% |
| !! | TTTAAATAAAAAAAGCAAAT+TGG | + | chr1.4:1634647-1634666 | None:intergenic | 10.0% |
| !!! | AATCTAATATTTTAAGATTT+TGG | - | chr1.4:1634313-1634332 | MS.gene90716:intron | 10.0% |
| !!! | GTTTAAAATATAAAAACTAA+GGG | + | chr1.4:1635757-1635776 | None:intergenic | 10.0% |
| !!! | TGTTTAAAATATAAAAACTA+AGG | + | chr1.4:1635758-1635777 | None:intergenic | 10.0% |
| !! | ATATATCATTTGTACTTAAT+TGG | - | chr1.4:1633485-1633504 | MS.gene90716:intron | 15.0% |
| !! | ATTTGATGAAAAATTCAATT+GGG | - | chr1.4:1633597-1633616 | MS.gene90716:intron | 15.0% |
| !! | TATTTGATGAAAAATTCAAT+TGG | - | chr1.4:1633596-1633615 | MS.gene90716:intron | 15.0% |
| !!! | AATACTAACTAACTTTTTAT+TGG | + | chr1.4:1634424-1634443 | None:intergenic | 15.0% |
| !!! | ATACTAACTAACTTTTTATT+GGG | + | chr1.4:1634423-1634442 | None:intergenic | 15.0% |
| !! | AAACATTTAATCTATCTACA+TGG | + | chr1.4:1634566-1634585 | None:intergenic | 20.0% |
| !! | AAACTCTAAATTATTCTAAC+AGG | + | chr1.4:1633853-1633872 | None:intergenic | 20.0% |
| !! | AAGTACTTTATATCATTCAT+TGG | + | chr1.4:1636051-1636070 | None:intergenic | 20.0% |
| !! | AATGGAAAAACAAGATATTT+AGG | + | chr1.4:1635112-1635131 | None:intergenic | 20.0% |
| !! | ATATATTCAAAAGACAATTG+TGG | - | chr1.4:1633213-1633232 | MS.gene90716:intron | 20.0% |
| !! | ATGTAGATAGATTAAATGTT+TGG | - | chr1.4:1634565-1634584 | MS.gene90716:CDS | 20.0% |
| !! | ATTGAAAATAGAACTAGATT+TGG | + | chr1.4:1635080-1635099 | None:intergenic | 20.0% |
| !! | TATTCATTGGACAATAATTT+AGG | - | chr1.4:1636134-1636153 | MS.gene90716:CDS | 20.0% |
| !! | TCAAGAAATTTAATGCATTA+AGG | - | chr1.4:1633941-1633960 | MS.gene90716:intron | 20.0% |
| !! | TGTTAATTAATATGAGGATT+TGG | - | chr1.4:1634712-1634731 | MS.gene90716:intron | 20.0% |
| !! | TTATAAATCATGACACTAAT+TGG | + | chr1.4:1635523-1635542 | None:intergenic | 20.0% |
| !! | TTTCGTACATATATATTCAT+TGG | - | chr1.4:1636121-1636140 | MS.gene90716:CDS | 20.0% |
| !!! | AATAGTTTGAAACAATATGA+TGG | - | chr1.4:1635349-1635368 | MS.gene90716:intron | 20.0% |
| !!! | AGATTTTGGATAAAAAAATG+TGG | - | chr1.4:1634327-1634346 | MS.gene90716:intron | 20.0% |
| !!! | ATTTAATGCATTAAGGTTTT+TGG | - | chr1.4:1633948-1633967 | MS.gene90716:intron | 20.0% |
| !!! | CTTTTGTGTTAATTAATATG+AGG | - | chr1.4:1634706-1634725 | MS.gene90716:intron | 20.0% |
| !!! | TTTGGTTGATTTAAAAATAG+AGG | + | chr1.4:1635062-1635081 | None:intergenic | 20.0% |
| ! | AAACTCAATGGTTAATAAAG+GGG | - | chr1.4:1634063-1634082 | MS.gene90716:intron | 25.0% |
| ! | AAGCAAAATAATGATTGAAG+GGG | + | chr1.4:1636082-1636101 | None:intergenic | 25.0% |
| ! | AATTCATCATCATCCAAAAA+TGG | - | chr1.4:1635940-1635959 | MS.gene90716:intron | 25.0% |
| ! | ACAAGCAAAATAATGATTGA+AGG | + | chr1.4:1636084-1636103 | None:intergenic | 25.0% |
| ! | ATGTAAGTAAACCACTATTA+AGG | - | chr1.4:1634892-1634911 | MS.gene90716:intron | 25.0% |
| ! | ATTATACCTTGATGAGAAAT+GGG | + | chr1.4:1635715-1635734 | None:intergenic | 25.0% |
| ! | CAAACTCAATGGTTAATAAA+GGG | - | chr1.4:1634062-1634081 | MS.gene90716:intron | 25.0% |
| ! | CAAGCAAAATAATGATTGAA+GGG | + | chr1.4:1636083-1636102 | None:intergenic | 25.0% |
| ! | CTATAAATATATGATCAGTG+TGG | - | chr1.4:1634756-1634775 | MS.gene90716:intron | 25.0% |
| ! | CTTCAATATTTACATTTGCT+AGG | - | chr1.4:1635642-1635661 | MS.gene90716:intron | 25.0% |
| ! | GATCATAAATTAGATATGAC+AGG | + | chr1.4:1633564-1633583 | None:intergenic | 25.0% |
| ! | TAAGAAAGTGATAGAGTTTA+CGG | - | chr1.4:1634970-1634989 | MS.gene90716:intron | 25.0% |
| ! | TATTATACCTTGATGAGAAA+TGG | + | chr1.4:1635716-1635735 | None:intergenic | 25.0% |
| ! | TCAAACTCAATGGTTAATAA+AGG | - | chr1.4:1634061-1634080 | MS.gene90716:intron | 25.0% |
| ! | TTAGGTATATATCTTATTCC+AGG | - | chr1.4:1634994-1635013 | MS.gene90716:intron | 25.0% |
| !! | ATGTTTGAAATTTGATCAGA+TGG | - | chr1.4:1633522-1633541 | MS.gene90716:intron | 25.0% |
| !! | TGATATAAAGTACTTCAAAG+TGG | - | chr1.4:1636056-1636075 | MS.gene90716:CDS | 25.0% |
| !!! | CAAGTTTGCTAGTAAAATTT+TGG | - | chr1.4:1634592-1634611 | MS.gene90716:CDS | 25.0% |
| !!! | TCATCTGTTAGCTTATTTTA+AGG | + | chr1.4:1635597-1635616 | None:intergenic | 25.0% |
| !!! | TGAGTGTTGAAAATATGTAA+GGG | - | chr1.4:1633913-1633932 | MS.gene90716:intron | 25.0% |
| !!! | TGTTGAGCAAGTAATTTTTT+TGG | - | chr1.4:1635024-1635043 | MS.gene90716:intron | 25.0% |
| AAACAACCACATAAATGAGT+TGG | + | chr1.4:1633989-1634008 | None:intergenic | 30.0% | |
| AGATATCCAACTCATTTATG+TGG | - | chr1.4:1633980-1633999 | MS.gene90716:intron | 30.0% | |
| AGTTAGAAGAAGGAAAACTT+TGG | - | chr1.4:1635271-1635290 | MS.gene90716:intron | 30.0% | |
| ATTACACATGCAATGTTCTT+TGG | + | chr1.4:1634945-1634964 | None:intergenic | 30.0% | |
| ATTCAAAAGACAATTGTGGT+TGG | - | chr1.4:1633217-1633236 | MS.gene90716:intron | 30.0% | |
| ATTCTACATCAATCAGTGTT+TGG | - | chr1.4:1636012-1636031 | MS.gene90716:CDS | 30.0% | |
| ATTGGAAGTTAATGTTACGT+AGG | + | chr1.4:1635690-1635709 | None:intergenic | 30.0% | |
| ATTTGGTATGTCCTTAATAG+TGG | + | chr1.4:1634906-1634925 | None:intergenic | 30.0% | |
| CAATTTCCTTTGACTATTAC+AGG | - | chr1.4:1635837-1635856 | MS.gene90716:intron | 30.0% | |
| CATTTCTTAGCATGTAAGAA+TGG | - | chr1.4:1635246-1635265 | MS.gene90716:intron | 30.0% | |
| CTACTTTATCTGTTCAAGAT+TGG | - | chr1.4:1633356-1633375 | MS.gene90716:intron | 30.0% | |
| CTGTAATAGTCAAAGGAAAT+TGG | + | chr1.4:1635839-1635858 | None:intergenic | 30.0% | |
| TACATCTGCAGTCAAATTAA+GGG | + | chr1.4:1634877-1634896 | None:intergenic | 30.0% | |
| TTACATCTGCAGTCAAATTA+AGG | + | chr1.4:1634878-1634897 | None:intergenic | 30.0% | |
| TTCAAATTCTTCTTACAGAC+AGG | - | chr1.4:1633402-1633421 | MS.gene90716:intron | 30.0% | |
| TTCTACATCAATCAGTGTTT+GGG | - | chr1.4:1636013-1636032 | MS.gene90716:CDS | 30.0% | |
| ! | ACAATAATTTAGGACGAGAT+TGG | - | chr1.4:1636144-1636163 | MS.gene90716:CDS | 30.0% |
| ! | CTAACTAACTTTTTATTGGG+TGG | + | chr1.4:1634420-1634439 | None:intergenic | 30.0% |
| ! | GAGAAATCAAATGAACGTTT+TGG | + | chr1.4:1633289-1633308 | None:intergenic | 30.0% |
| ! | TTTGGATGATGATGAATTCT+TGG | + | chr1.4:1635938-1635957 | None:intergenic | 30.0% |
| !! | AATATGAGGATTTGGTGATA+AGG | - | chr1.4:1634720-1634739 | MS.gene90716:intron | 30.0% |
| !! | GTGAGTGTTGAAAATATGTA+AGG | - | chr1.4:1633912-1633931 | MS.gene90716:intron | 30.0% |
| !! | TAGTTGAAAGTGTTGTGAAT+TGG | - | chr1.4:1633881-1633900 | MS.gene90716:intron | 30.0% |
| !! | TGCAATTTTAGCAGTAACAT+TGG | - | chr1.4:1633333-1633352 | MS.gene90716:intron | 30.0% |
| AAATTGGACAAGATGTGATC+AGG | + | chr1.4:1635823-1635842 | None:intergenic | 35.0% | |
| AAGAATGGAGAGTTAGAAGA+AGG | - | chr1.4:1635261-1635280 | MS.gene90716:intron | 35.0% | |
| AATGGATGATCTTACGTTTG+AGG | - | chr1.4:1634217-1634236 | MS.gene90716:intron | 35.0% | |
| AATGTTACGTAGGTGATACA+AGG | + | chr1.4:1635680-1635699 | None:intergenic | 35.0% | |
| AATTGTAGAGACAATCCTGT+TGG | + | chr1.4:1633311-1633330 | None:intergenic | 35.0% | |
| ACATCTGCAGTCAAATTAAG+GGG | + | chr1.4:1634876-1634895 | None:intergenic | 35.0% | |
| AGAACATTGCATGTGTAATC+TGG | - | chr1.4:1634946-1634965 | MS.gene90716:intron | 35.0% | |
| AGCTAACAGATGAGTTTGTA+TGG | - | chr1.4:1635604-1635623 | MS.gene90716:intron | 35.0% | |
| AGTGATAGAGTTTACGGTTT+AGG | - | chr1.4:1634976-1634995 | MS.gene90716:intron | 35.0% | |
| ATTGAGTTTGACACCACATT+TGG | + | chr1.4:1634052-1634071 | None:intergenic | 35.0% | |
| ATTGTTGTGTCAAGTGTGAT+TGG | - | chr1.4:1634245-1634264 | MS.gene90716:intron | 35.0% | |
| ATTTGATCAGATGGAAGTTC+TGG | - | chr1.4:1633531-1633550 | MS.gene90716:intron | 35.0% | |
| CAATAACCCATTTCTCATCA+AGG | - | chr1.4:1635706-1635725 | MS.gene90716:CDS | 35.0% | |
| CGAGTACTTTAGATAGGAAA+TGG | + | chr1.4:1635130-1635149 | None:intergenic | 35.0% | |
| CTTTGACTATTACAGGCTAT+GGG | - | chr1.4:1635844-1635863 | MS.gene90716:intron | 35.0% | |
| GAAATTCTTTCCGACAATAG+TGG | - | chr1.4:1634101-1634120 | MS.gene90716:intron | 35.0% | |
| TTGAGTTTGACACCACATTT+GGG | + | chr1.4:1634051-1634070 | None:intergenic | 35.0% | |
| ! | AAATGTGGTGTCAAACTCAA+TGG | - | chr1.4:1634051-1634070 | MS.gene90716:intron | 35.0% |
| ! | ACATTTGCTAGGATGATGAT+TGG | - | chr1.4:1635653-1635672 | MS.gene90716:intron | 35.0% |
| ! | CACCATTTAGTAAGCATTGT+GGG | - | chr1.4:1633631-1633650 | MS.gene90716:intron | 35.0% |
| ! | GTTCATTTGATTTCTCCAAC+AGG | - | chr1.4:1633293-1633312 | MS.gene90716:intron | 35.0% |
| ! | TAAGAAGAATTTGAAGCCAC+TGG | + | chr1.4:1633397-1633416 | None:intergenic | 35.0% |
| ! | TTCCTATCTAAAGTACTCGA+GGG | - | chr1.4:1635131-1635150 | MS.gene90716:intron | 35.0% |
| ! | TTTCCTATCTAAAGTACTCG+AGG | - | chr1.4:1635130-1635149 | MS.gene90716:intron | 35.0% |
| !! | CTTGATGAGAAATGGGTTAT+TGG | + | chr1.4:1635708-1635727 | None:intergenic | 35.0% |
| !! | TTGAAAGTGTTGTGAATTGG+AGG | - | chr1.4:1633884-1633903 | MS.gene90716:intron | 35.0% |
| !!! | GGTTGTTTTTGACTCAATGT+GGG | - | chr1.4:1634001-1634020 | MS.gene90716:intron | 35.0% |
| !!! | TGGTTGTTTTTGACTCAATG+TGG | - | chr1.4:1634000-1634019 | MS.gene90716:intron | 35.0% |
| !!! | TTGTGGTTGGAGTTTTTTCA+TGG | - | chr1.4:1633230-1633249 | MS.gene90716:intron | 35.0% |
| AACCCTCGAGTACTTTAGAT+AGG | + | chr1.4:1635136-1635155 | None:intergenic | 40.0% | |
| AAGCCCATTCTTGCATTTGA+GGG | - | chr1.4:1634818-1634837 | MS.gene90716:intron | 40.0% | |
| ACTATTACAGGCTATGGGAT+TGG | - | chr1.4:1635849-1635868 | MS.gene90716:intron | 40.0% | |
| AGAATTTCGACACAAGGAGT+TGG | + | chr1.4:1634089-1634108 | None:intergenic | 40.0% | |
| ATGAAAAAGCTTCCACTCGA+GGG | - | chr1.4:1634176-1634195 | MS.gene90716:intron | 40.0% | |
| CCACAATGCTTACTAAATGG+TGG | + | chr1.4:1633633-1633652 | None:intergenic | 40.0% | |
| CCATAGCCTGTAATAGTCAA+AGG | + | chr1.4:1635846-1635865 | None:intergenic | 40.0% | |
| CCTTTGACTATTACAGGCTA+TGG | - | chr1.4:1635843-1635862 | MS.gene90716:intron | 40.0% | |
| CGTAAGATCATCCATTCATC+CGG | + | chr1.4:1634213-1634232 | None:intergenic | 40.0% | |
| CTATTACAGGCTATGGGATT+GGG | - | chr1.4:1635850-1635869 | MS.gene90716:intron | 40.0% | |
| CTTGCTCAACAAAAATAGCC+TGG | + | chr1.4:1635015-1635034 | None:intergenic | 40.0% | |
| GAAATGTCCAATTTGTCCAG+TGG | - | chr1.4:1633378-1633397 | MS.gene90716:intron | 40.0% | |
| GTCCCACAATGCTTACTAAA+TGG | + | chr1.4:1633636-1633655 | None:intergenic | 40.0% | |
| GTGTTGTGAATTGGAGGAAA+AGG | - | chr1.4:1633890-1633909 | MS.gene90716:intron | 40.0% | |
| TATTGGGTGGTAACAGCTTA+GGG | + | chr1.4:1634407-1634426 | None:intergenic | 40.0% | |
| TCGGAAAGAATTTCGACACA+AGG | + | chr1.4:1634095-1634114 | None:intergenic | 40.0% | |
| TCTAAAGGAGCTTGGTTACA+AGG | - | chr1.4:1634845-1634864 | MS.gene90716:intron | 40.0% | |
| TTATTGGGTGGTAACAGCTT+AGG | + | chr1.4:1634408-1634427 | None:intergenic | 40.0% | |
| TTGTGTCAAGTGTGATTGGA+TGG | - | chr1.4:1634249-1634268 | MS.gene90716:intron | 40.0% | |
| ! | ACTCAATGTGGGTGATCTTT+TGG | - | chr1.4:1634012-1634031 | MS.gene90716:intron | 40.0% |
| ! | AGCTGGCTTATGCTATCAAA+AGG | - | chr1.4:1633660-1633679 | MS.gene90716:CDS | 40.0% |
| ! | CCACCATTTAGTAAGCATTG+TGG | - | chr1.4:1633630-1633649 | MS.gene90716:intron | 40.0% |
| ! | TTTGAAGCCACTGGACAAAT+TGG | + | chr1.4:1633388-1633407 | None:intergenic | 40.0% |
| AACGGCAATGCAAGTGTATG+TGG | - | chr1.4:1634153-1634172 | MS.gene90716:intron | 45.0% | |
| ACACCACATTTGGGTAGTGA+AGG | + | chr1.4:1634042-1634061 | None:intergenic | 45.0% | |
| ACACCACCAACATCAAAAGC+AGG | - | chr1.4:1635971-1635990 | MS.gene90716:CDS | 45.0% | |
| ACATACACTTGCATTGCCGT+TGG | + | chr1.4:1634154-1634173 | None:intergenic | 45.0% | |
| AGCTCCCTCAAATGCAAGAA+TGG | + | chr1.4:1634825-1634844 | None:intergenic | 45.0% | |
| CAAGCCCATTCTTGCATTTG+AGG | - | chr1.4:1634817-1634836 | MS.gene90716:intron | 45.0% | |
| CACCACATTTGGGTAGTGAA+GGG | + | chr1.4:1634041-1634060 | None:intergenic | 45.0% | |
| GATGAAAAAGCTTCCACTCG+AGG | - | chr1.4:1634175-1634194 | MS.gene90716:intron | 45.0% | |
| GCATTTGAGGGAGCTTCTAA+AGG | - | chr1.4:1634830-1634849 | MS.gene90716:intron | 45.0% | |
| GCTCCCTCAAATGCAAGAAT+GGG | + | chr1.4:1634824-1634843 | None:intergenic | 45.0% | |
| TGAAAAAGCTTCCACTCGAG+GGG | - | chr1.4:1634177-1634196 | MS.gene90716:intron | 45.0% | |
| TGCAGCTGGTAAGTACATTC+TGG | - | chr1.4:1635875-1635894 | MS.gene90716:intron | 45.0% | |
| TTCCGACAATAGTGGTCAAG+CGG | - | chr1.4:1634109-1634128 | MS.gene90716:intron | 45.0% | |
| !! | AGCTGTCCTGCTTTTGATGT+TGG | + | chr1.4:1635980-1635999 | None:intergenic | 45.0% |
| !! | TCCAGTTTTGATGATCCCTC+AGG | - | chr1.4:1634379-1634398 | MS.gene90716:intron | 45.0% |
| !! | TGTCCTGCTTTTGATGTTGG+TGG | + | chr1.4:1635977-1635996 | None:intergenic | 45.0% |
| !!! | GGTGTGCTTGATGCCATTTT+TGG | + | chr1.4:1635956-1635975 | None:intergenic | 45.0% |
| !! | AAAAAAATATATATTCTATA+TGG | - | chr1.4:1634668-1634687 | MS.gene90716:intron | 5.0% |
| !! | AATAACTTAATTATAATATA+AGG | - | chr1.4:1635428-1635447 | MS.gene90716:intron | 5.0% |
| !! | ATAACTTAATTATAATATAA+GGG | - | chr1.4:1635429-1635448 | MS.gene90716:intron | 5.0% |
| !!! | ATTTTTAAAAAATTATTTTG+AGG | - | chr1.4:1635473-1635492 | MS.gene90716:intron | 5.0% |
| AAAAAGCTTCCACTCGAGGG+GGG | - | chr1.4:1634179-1634198 | MS.gene90716:intron | 50.0% | |
| AGCATTGTGGGACTGATAGC+TGG | - | chr1.4:1633643-1633662 | MS.gene90716:intron | 50.0% | |
| CTCCCTTCACTACCCAAATG+TGG | - | chr1.4:1634036-1634055 | MS.gene90716:intron | 50.0% | |
| GAAAAAGCTTCCACTCGAGG+GGG | - | chr1.4:1634178-1634197 | MS.gene90716:intron | 50.0% | |
| GCCTGAGGGATCATCAAAAC+TGG | + | chr1.4:1634383-1634402 | None:intergenic | 50.0% | |
| TAACAGCTTAGGGAGCCTGA+GGG | + | chr1.4:1634397-1634416 | None:intergenic | 50.0% | |
| TATGGGATTGGGTTTGCAGC+TGG | - | chr1.4:1635861-1635880 | MS.gene90716:intron | 50.0% | |
| TGATCAGTGTGGCTCAGAGA+TGG | - | chr1.4:1634767-1634786 | MS.gene90716:intron | 50.0% | |
| ! | AGGGAGCTTCTAAAGGAGCT+TGG | - | chr1.4:1634837-1634856 | MS.gene90716:intron | 50.0% |
| !! | AGAGATGGTGGGAGCAGTAT+GGG | - | chr1.4:1634782-1634801 | MS.gene90716:intron | 50.0% |
| AAAAGCTTCCACTCGAGGGG+GGG | - | chr1.4:1634180-1634199 | MS.gene90716:intron | 55.0% | |
| CAGTGTGGCTCAGAGATGGT+GGG | - | chr1.4:1634771-1634790 | MS.gene90716:intron | 55.0% | |
| CGCCGCTTGACCACTATTGT+CGG | + | chr1.4:1634114-1634133 | None:intergenic | 55.0% | |
| GCTCCATTGAACGCGTCCAA+CGG | - | chr1.4:1634135-1634154 | MS.gene90716:intron | 55.0% | |
| GTAACAGCTTAGGGAGCCTG+AGG | + | chr1.4:1634398-1634417 | None:intergenic | 55.0% | |
| TCAGTGTGGCTCAGAGATGG+TGG | - | chr1.4:1634770-1634789 | MS.gene90716:intron | 55.0% | |
| TTGCCGTTGGACGCGTTCAA+TGG | + | chr1.4:1634141-1634160 | None:intergenic | 55.0% | |
| !! | CAGAGATGGTGGGAGCAGTA+TGG | - | chr1.4:1634781-1634800 | MS.gene90716:intron | 55.0% |
| GGGGTGCATAGCCGGATGAA+TGG | - | chr1.4:1634199-1634218 | MS.gene90716:intron | 60.0% | |
| GCTATGCACCCCCCCTCGAG+TGG | + | chr1.4:1634191-1634210 | None:intergenic | 70.0% | |
| ! | CTCGAGGGGGGGTGCATAGC+CGG | - | chr1.4:1634191-1634210 | MS.gene90716:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1633205 | 1636182 | 1633205 | ID=MS.gene90716 |
| chr1.4 | mRNA | 1633205 | 1636182 | 1633205 | ID=MS.gene90716.t1;Parent=MS.gene90716 |
| chr1.4 | exon | 1635964 | 1636182 | 1635964 | ID=MS.gene90716.t1.exon1;Parent=MS.gene90716.t1 |
| chr1.4 | CDS | 1635964 | 1636182 | 1635964 | ID=cds.MS.gene90716.t1;Parent=MS.gene90716.t1 |
| chr1.4 | exon | 1635706 | 1635846 | 1635706 | ID=MS.gene90716.t1.exon2;Parent=MS.gene90716.t1 |
| chr1.4 | CDS | 1635706 | 1635846 | 1635706 | ID=cds.MS.gene90716.t1;Parent=MS.gene90716.t1 |
| chr1.4 | exon | 1634494 | 1634613 | 1634494 | ID=MS.gene90716.t1.exon3;Parent=MS.gene90716.t1 |
| chr1.4 | CDS | 1634494 | 1634613 | 1634494 | ID=cds.MS.gene90716.t1;Parent=MS.gene90716.t1 |
| chr1.4 | exon | 1633660 | 1633755 | 1633660 | ID=MS.gene90716.t1.exon4;Parent=MS.gene90716.t1 |
| chr1.4 | CDS | 1633660 | 1633755 | 1633660 | ID=cds.MS.gene90716.t1;Parent=MS.gene90716.t1 |
| chr1.4 | exon | 1633505 | 1633528 | 1633505 | ID=MS.gene90716.t1.exon5;Parent=MS.gene90716.t1 |
| chr1.4 | CDS | 1633505 | 1633528 | 1633505 | ID=cds.MS.gene90716.t1;Parent=MS.gene90716.t1 |
| chr1.4 | exon | 1633205 | 1633231 | 1633205 | ID=MS.gene90716.t1.exon6;Parent=MS.gene90716.t1 |
| chr1.4 | CDS | 1633205 | 1633231 | 1633205 | ID=cds.MS.gene90716.t1;Parent=MS.gene90716.t1 |
| Gene Sequence |
| Protein sequence |
