Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24238.t1 | XP_003589322.2 | 99 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 9.00E-109 | 402.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24238.t1 | Q6ZRR5 | 26.6 | 192 | 139 | 2 | 9 | 198 | 9 | 200 | 1.8e-17 | 90.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24238.t1 | G7I5C1 | 99.0 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 6.5e-109 | 402.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene24238 | 0.823424 | 1.40E-53 | -1.69E-46 |
| MS.gene049222 | MS.gene24238 | 0.814942 | 1.19E-51 | -1.69E-46 |
| MS.gene049232 | MS.gene24238 | 0.814053 | 1.87E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene24238 | 0.807894 | 4.04E-50 | -1.69E-46 |
| MS.gene049369 | MS.gene24238 | 0.85151 | 8.47E-61 | -1.69E-46 |
| MS.gene049396 | MS.gene24238 | 0.813531 | 2.44E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene24238 | 0.832761 | 7.86E-56 | -1.69E-46 |
| MS.gene049805 | MS.gene24238 | 0.814884 | 1.23E-51 | -1.69E-46 |
| MS.gene049828 | MS.gene24238 | 0.805078 | 1.59E-49 | -1.69E-46 |
| MS.gene050216 | MS.gene24238 | 0.802836 | 4.64E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene24238 | -0.816927 | 4.30E-52 | -1.69E-46 |
| MS.gene050499 | MS.gene24238 | 0.845388 | 4.19E-59 | -1.69E-46 |
| MS.gene050520 | MS.gene24238 | 0.834458 | 2.96E-56 | -1.69E-46 |
| MS.gene050593 | MS.gene24238 | 0.805926 | 1.05E-49 | -1.69E-46 |
| MS.gene050662 | MS.gene24238 | 0.828768 | 7.48E-55 | -1.69E-46 |
| MS.gene050686 | MS.gene24238 | 0.824929 | 6.18E-54 | -1.69E-46 |
| MS.gene050747 | MS.gene24238 | 0.809563 | 1.78E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene24238 | 0.862746 | 4.07E-64 | -1.69E-46 |
| MS.gene050950 | MS.gene24238 | 0.805403 | 1.36E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene24238 | 0.830035 | 3.68E-55 | -1.69E-46 |
| MS.gene051255 | MS.gene24238 | 0.820671 | 6.06E-53 | -1.69E-46 |
| MS.gene051692 | MS.gene24238 | 0.805341 | 1.40E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene24238 | 0.825628 | 4.23E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene24238 | 0.87654 | 1.29E-68 | -1.69E-46 |
| MS.gene051874 | MS.gene24238 | 0.800547 | 1.37E-48 | -1.69E-46 |
| MS.gene052271 | MS.gene24238 | 0.810219 | 1.29E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene24238 | 0.822148 | 2.77E-53 | -1.69E-46 |
| MS.gene052484 | MS.gene24238 | 0.807351 | 5.27E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene24238 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene052632 | MS.gene24238 | 0.821669 | 3.57E-53 | -1.69E-46 |
| MS.gene052916 | MS.gene24238 | 0.821395 | 4.13E-53 | -1.69E-46 |
| MS.gene052966 | MS.gene24238 | 0.808146 | 3.57E-50 | -1.69E-46 |
| MS.gene053018 | MS.gene24238 | 0.838241 | 3.23E-57 | -1.69E-46 |
| MS.gene053207 | MS.gene24238 | 0.81626 | 6.06E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene24238 | 0.835329 | 1.79E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene24238 | 0.822105 | 2.83E-53 | -1.69E-46 |
| MS.gene053449 | MS.gene24238 | 0.822536 | 2.25E-53 | -1.69E-46 |
| MS.gene053505 | MS.gene24238 | 0.825099 | 5.64E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene24238 | 0.842463 | 2.55E-58 | -1.69E-46 |
| MS.gene053758 | MS.gene24238 | 0.802636 | 5.11E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene24238 | 0.835555 | 1.57E-56 | -1.69E-46 |
| MS.gene053824 | MS.gene24238 | 0.81131 | 7.47E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene24238 | 0.811241 | 7.72E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene24238 | 0.802398 | 5.72E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene24238 | 0.800202 | 1.61E-48 | -1.69E-46 |
| MS.gene05505 | MS.gene24238 | 0.858962 | 5.75E-63 | -1.69E-46 |
| MS.gene055224 | MS.gene24238 | 0.812502 | 4.10E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene24238 | 0.802937 | 4.43E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene24238 | 0.858265 | 9.28E-63 | -1.69E-46 |
| MS.gene055909 | MS.gene24238 | 0.817828 | 2.69E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene24238 | 0.816006 | 6.91E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene24238 | 0.819782 | 9.69E-53 | -1.69E-46 |
| MS.gene055941 | MS.gene24238 | 0.812026 | 5.22E-51 | -1.69E-46 |
| MS.gene056410 | MS.gene24238 | 0.830808 | 2.38E-55 | -1.69E-46 |
| MS.gene056422 | MS.gene24238 | 0.827016 | 1.97E-54 | -1.69E-46 |
| MS.gene056448 | MS.gene24238 | 0.840084 | 1.08E-57 | -1.69E-46 |
| MS.gene056511 | MS.gene24238 | 0.813338 | 2.69E-51 | -1.69E-46 |
| MS.gene056549 | MS.gene24238 | 0.809391 | 1.94E-50 | -1.69E-46 |
| MS.gene056611 | MS.gene24238 | 0.839899 | 1.20E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene24238 | 0.806253 | 9.00E-50 | -1.69E-46 |
| MS.gene056942 | MS.gene24238 | 0.822174 | 2.73E-53 | -1.69E-46 |
| MS.gene057076 | MS.gene24238 | 0.817513 | 3.17E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene24238 | 0.811272 | 7.61E-51 | -1.69E-46 |
| MS.gene057285 | MS.gene24238 | 0.811442 | 6.99E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene24238 | 0.803942 | 2.74E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene24238 | 0.820751 | 5.81E-53 | -1.69E-46 |
| MS.gene057734 | MS.gene24238 | 0.810108 | 1.36E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene24238 | 0.840206 | 1.00E-57 | -1.69E-46 |
| MS.gene058130 | MS.gene24238 | 0.801514 | 8.69E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene24238 | 0.808716 | 2.70E-50 | -1.69E-46 |
| MS.gene058459 | MS.gene24238 | 0.803262 | 3.79E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene24238 | 0.818227 | 2.19E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene24238 | 0.836606 | 8.48E-57 | -1.69E-46 |
| MS.gene05934 | MS.gene24238 | 0.815247 | 1.02E-51 | -1.69E-46 |
| MS.gene059367 | MS.gene24238 | 0.80648 | 8.06E-50 | -1.69E-46 |
| MS.gene059368 | MS.gene24238 | 0.805459 | 1.32E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene24238 | 0.8513 | 9.71E-61 | -1.69E-46 |
| MS.gene059674 | MS.gene24238 | 0.812509 | 4.09E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene24238 | 0.85688 | 2.39E-62 | -1.69E-46 |
| MS.gene059718 | MS.gene24238 | 0.827834 | 1.26E-54 | -1.69E-46 |
| MS.gene059801 | MS.gene24238 | 0.814592 | 1.42E-51 | -1.69E-46 |
| MS.gene05986 | MS.gene24238 | 0.802577 | 5.25E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene24238 | 0.868922 | 4.55E-66 | -1.69E-46 |
| MS.gene060193 | MS.gene24238 | 0.816206 | 6.23E-52 | -1.69E-46 |
| MS.gene060482 | MS.gene24238 | 0.864915 | 8.62E-65 | -1.69E-46 |
| MS.gene060804 | MS.gene24238 | 0.819323 | 1.23E-52 | -1.69E-46 |
| MS.gene060818 | MS.gene24238 | 0.816742 | 4.73E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene24238 | 0.810064 | 1.39E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene24238 | 0.863988 | 1.68E-64 | -1.69E-46 |
| MS.gene061041 | MS.gene24238 | 0.824408 | 8.21E-54 | -1.69E-46 |
| MS.gene061134 | MS.gene24238 | 0.829982 | 3.80E-55 | -1.69E-46 |
| MS.gene061171 | MS.gene24238 | 0.81091 | 9.11E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene24238 | 0.841365 | 4.97E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24238 | MS.gene90716 | PPI |
| MS.gene90716 | MS.gene24238 | PPI |
| MS.gene26999 | MS.gene24238 | PPI |
| MS.gene24238 | MS.gene27261 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24238.t1 | MTR_1g022950 | 99.000 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 3.60e-149 | 414 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24238.t1 | AT1G35180 | 63.184 | 201 | 72 | 1 | 2 | 200 | 3 | 203 | 3.25e-96 | 280 |
| MS.gene24238.t1 | AT1G35170 | 64.865 | 185 | 65 | 0 | 16 | 200 | 19 | 203 | 4.43e-91 | 266 |
| MS.gene24238.t1 | AT1G45010 | 61.275 | 204 | 77 | 1 | 2 | 203 | 3 | 206 | 4.38e-87 | 256 |
| MS.gene24238.t1 | AT1G35170 | 62.431 | 181 | 68 | 0 | 16 | 196 | 19 | 199 | 5.53e-85 | 251 |
| MS.gene24238.t1 | AT1G45010 | 56.938 | 209 | 88 | 1 | 2 | 208 | 3 | 211 | 3.54e-82 | 244 |
| MS.gene24238.t1 | AT1G35170 | 65.753 | 146 | 50 | 0 | 16 | 161 | 19 | 164 | 7.66e-72 | 216 |
| MS.gene24238.t1 | AT1G35170 | 65.753 | 146 | 50 | 0 | 16 | 161 | 19 | 164 | 7.66e-72 | 216 |
| MS.gene24238.t1 | AT1G45010 | 62.346 | 162 | 59 | 1 | 2 | 161 | 3 | 164 | 6.02e-69 | 208 |
| MS.gene24238.t1 | AT1G45010 | 63.846 | 130 | 47 | 0 | 74 | 203 | 1 | 130 | 5.23e-60 | 185 |
Find 46 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATCTGCAGTCAAATTA+AGG | 0.189859 | 1.2:+1891058 | None:intergenic |
| CTTGATGAGAAATGGGTTAT+TGG | 0.254552 | 1.2:+1890227 | None:intergenic |
| TTTGAAGCCACTGGACAAAT+TGG | 0.271253 | 1.2:+1892525 | None:intergenic |
| GAGAAATCAAATGAACGTTT+TGG | 0.301030 | 1.2:+1892624 | None:intergenic |
| GTCCCACAATGCTTACTAAA+TGG | 0.321372 | 1.2:+1892277 | None:intergenic |
| CTACTTTATCTGTTCAAGAT+TGG | 0.324800 | 1.2:-1892554 | MS.gene24238:CDS |
| TATTATACCTTGATGAGAAA+TGG | 0.337195 | 1.2:+1890219 | None:intergenic |
| ATTTGATCAGATGGAAGTTC+TGG | 0.337359 | 1.2:-1892379 | MS.gene24238:intron |
| CAGAGATGGTGGGAGCAGTA+TGG | 0.350230 | 1.2:-1891152 | MS.gene24238:CDS |
| CTATTACAGGCTATGGGATT+GGG | 0.373800 | 1.2:-1890085 | MS.gene24238:intron |
| ACAATAATTTAGGAGGAGAT+TGG | 0.391152 | 1.2:-1889791 | MS.gene24238:intron |
| ACATTTGCTAGGATGATGAT+TGG | 0.391517 | 1.2:-1890279 | MS.gene24238:CDS |
| TACATCTGCAGTCAAATTAA+GGG | 0.403745 | 1.2:+1891059 | None:intergenic |
| ATTATACCTTGATGAGAAAT+GGG | 0.416729 | 1.2:+1890220 | None:intergenic |
| AGCTCCCTCAAATGCAAGAA+TGG | 0.423674 | 1.2:+1891111 | None:intergenic |
| ACTATTACAGGCTATGGGAT+TGG | 0.428555 | 1.2:-1890086 | MS.gene24238:intron |
| TTCAAATTCTTCTTACAGAC+AGG | 0.438036 | 1.2:-1892508 | MS.gene24238:intron |
| CAAGCCCATTCTTGCATTTG+AGG | 0.445389 | 1.2:-1891116 | MS.gene24238:CDS |
| TCTAAAGGAGCTTGGTTACA+AGG | 0.454047 | 1.2:-1891088 | MS.gene24238:CDS |
| GTTCATTTGATTTCTCCAAC+AGG | 0.463083 | 1.2:-1892617 | MS.gene24238:CDS |
| GCATTTGAGGGAGCTTCTAA+AGG | 0.464317 | 1.2:-1891103 | MS.gene24238:CDS |
| AAGCCCATTCTTGCATTTGA+GGG | 0.465855 | 1.2:-1891115 | MS.gene24238:CDS |
| CACCATTTAGTAAGCATTGT+GGG | 0.466117 | 1.2:-1892279 | MS.gene24238:CDS |
| CAATAACCCATTTCTCATCA+AGG | 0.469006 | 1.2:-1890226 | MS.gene24238:intron |
| TATGGGATTGGGTTTGCAGC+TGG | 0.477409 | 1.2:-1890074 | MS.gene24238:intron |
| AGCATTGTGGGACTGATAGC+TGG | 0.478228 | 1.2:-1892267 | MS.gene24238:CDS |
| GCTCCCTCAAATGCAAGAAT+GGG | 0.481370 | 1.2:+1891112 | None:intergenic |
| CTTCGACTATTACAGGCTAT+GGG | 0.490448 | 1.2:-1890091 | MS.gene24238:intron |
| AGGGAGCTTCTAAAGGAGCT+TGG | 0.499104 | 1.2:-1891096 | MS.gene24238:CDS |
| TAAGAAGAATTTGAAGCCAC+TGG | 0.506715 | 1.2:+1892516 | None:intergenic |
| AGCTGGCTTATGCTATCAAA+AGG | 0.510458 | 1.2:-1892250 | MS.gene24238:intron |
| CTTCAATATTTACATTTGCT+AGG | 0.511008 | 1.2:-1890290 | MS.gene24238:CDS |
| AGAGATGGTGGGAGCAGTAT+GGG | 0.512111 | 1.2:-1891151 | MS.gene24238:CDS |
| ATTCAAAAGACAATTGTGGT+TGG | 0.543048 | 1.2:-1892693 | MS.gene24238:CDS |
| GATCATAAATTAGATATGAC+AGG | 0.545515 | 1.2:+1892349 | None:intergenic |
| ATTGGAAGTTAATGTTACGT+AGG | 0.557867 | 1.2:+1890245 | None:intergenic |
| AATTGTAGAGACAATCCTGT+TGG | 0.571539 | 1.2:+1892602 | None:intergenic |
| GAAATGTCCAATTTGTCCAG+TGG | 0.588096 | 1.2:-1892532 | MS.gene24238:CDS |
| CCACAATGCTTACTAAATGG+TGG | 0.601229 | 1.2:+1892280 | None:intergenic |
| CCACCATTTAGTAAGCATTG+TGG | 0.612304 | 1.2:-1892280 | MS.gene24238:CDS |
| AATGTTACGTAGGTGATACA+AGG | 0.616770 | 1.2:+1890255 | None:intergenic |
| ATATATTCAAAAGACAATTG+TGG | 0.625016 | 1.2:-1892697 | MS.gene24238:CDS |
| ACATCTGCAGTCAAATTAAG+GGG | 0.627723 | 1.2:+1891060 | None:intergenic |
| TCAGTGTGGCTCAGAGATGG+TGG | 0.640532 | 1.2:-1891163 | MS.gene24238:intron |
| CAGTGTGGCTCAGAGATGGT+GGG | 0.652161 | 1.2:-1891162 | MS.gene24238:CDS |
| TGATCAGTGTGGCTCAGAGA+TGG | 0.653705 | 1.2:-1891166 | MS.gene24238:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTTTTAAAAATTT+TGG | + | chr1.2:1892019-1892038 | None:intergenic | 0.0% |
| !! | GTACAAAATAAATAAATATT+TGG | + | chr1.2:1891470-1891489 | None:intergenic | 10.0% |
| !! | TTAAAATAAAATATGCAAAT+TGG | + | chr1.2:1891203-1891222 | None:intergenic | 10.0% |
| !!! | AATCTAATATTTTAAGATTT+TGG | - | chr1.2:1890883-1890902 | MS.gene24238:intron | 10.0% |
| !!! | GTTTAAAATATAAAAACTAA+GGG | + | chr1.2:1892305-1892324 | None:intergenic | 10.0% |
| !!! | TGTTTAAAATATAAAAACTA+AGG | + | chr1.2:1892306-1892325 | None:intergenic | 10.0% |
| !! | AATAGAAAAACAAGATATTT+AGG | + | chr1.2:1891659-1891678 | None:intergenic | 15.0% |
| !! | ATATATCATTTGTACTTAAT+TGG | - | chr1.2:1890055-1890074 | MS.gene24238:intron | 15.0% |
| !! | ATTTGATGAAAAATTCAATT+GGG | - | chr1.2:1890167-1890186 | MS.gene24238:intron | 15.0% |
| !! | TATTTGATGAAAAATTCAAT+TGG | - | chr1.2:1890166-1890185 | MS.gene24238:intron | 15.0% |
| !! | TTTAATAATATGATACTCAT+TGG | - | chr1.2:1892340-1892359 | MS.gene24238:CDS | 15.0% |
| !! | AAACATTTAATCTATCTACA+TGG | + | chr1.2:1891135-1891154 | None:intergenic | 20.0% |
| !! | AAACTCTAAATTATTCTAAC+AGG | + | chr1.2:1890424-1890443 | None:intergenic | 20.0% |
| !! | AAGTACTTTATATCATTCAT+TGG | + | chr1.2:1892596-1892615 | None:intergenic | 20.0% |
| !! | ATATATTCAAAAGACAATTG+TGG | - | chr1.2:1889783-1889802 | MS.gene24238:intron | 20.0% |
| !! | ATGTAGATAGATTAAATGTT+TGG | - | chr1.2:1891134-1891153 | MS.gene24238:CDS | 20.0% |
| !! | ATTGAAAATAGAACTAGATT+TGG | + | chr1.2:1891627-1891646 | None:intergenic | 20.0% |
| !! | TATTCATTGGACAATAATTT+AGG | - | chr1.2:1892679-1892698 | MS.gene24238:CDS | 20.0% |
| !! | TCAAGAAATTTAATGCATTA+AGG | - | chr1.2:1890512-1890531 | MS.gene24238:intron | 20.0% |
| !! | TGTTAATTAATATGAGGATT+TGG | - | chr1.2:1891259-1891278 | MS.gene24238:intron | 20.0% |
| !! | TTATAAATCATGACACTAAT+TGG | + | chr1.2:1892071-1892090 | None:intergenic | 20.0% |
| !! | TTTCGTACATATATATTCAT+TGG | - | chr1.2:1892666-1892685 | MS.gene24238:CDS | 20.0% |
| !!! | AAGATTTTGGATAAAAAATG+TGG | - | chr1.2:1890896-1890915 | MS.gene24238:intron | 20.0% |
| !!! | AATAGTTTGAAACAATATGA+TGG | - | chr1.2:1891896-1891915 | MS.gene24238:intron | 20.0% |
| !!! | AATTCTATCCAACTTTTTAT+TGG | + | chr1.2:1890992-1891011 | None:intergenic | 20.0% |
| !!! | ATTCTATCCAACTTTTTATT+GGG | + | chr1.2:1890991-1891010 | None:intergenic | 20.0% |
| !!! | ATTTAATGCATTAAGGTTTT+TGG | - | chr1.2:1890519-1890538 | MS.gene24238:intron | 20.0% |
| !!! | CTTTTGTGTTAATTAATATG+AGG | - | chr1.2:1891253-1891272 | MS.gene24238:intron | 20.0% |
| !!! | TTTGGTTGATTTAAAAATAG+AGG | + | chr1.2:1891609-1891628 | None:intergenic | 20.0% |
| ! | AAATCATCATCATCCAAAAA+TGG | - | chr1.2:1892485-1892504 | MS.gene24238:intron | 25.0% |
| ! | AAGCAAAATAATGATTGAAG+GGG | + | chr1.2:1892627-1892646 | None:intergenic | 25.0% |
| ! | ACAAGCAAAATAATGATTGA+AGG | + | chr1.2:1892629-1892648 | None:intergenic | 25.0% |
| ! | ATGTAAGTAAACCACTATTA+AGG | - | chr1.2:1891439-1891458 | MS.gene24238:intron | 25.0% |
| ! | ATTATACCTTGATGAGAAAT+GGG | + | chr1.2:1892263-1892282 | None:intergenic | 25.0% |
| ! | CAAGCAAAATAATGATTGAA+GGG | + | chr1.2:1892628-1892647 | None:intergenic | 25.0% |
| ! | CTTCAATATTTACATTTGCT+AGG | - | chr1.2:1892190-1892209 | MS.gene24238:intron | 25.0% |
| ! | GATCATAAATTAGATATGAC+AGG | + | chr1.2:1890134-1890153 | None:intergenic | 25.0% |
| ! | TAAGAAAGTGATAGAGTTTA+CGG | - | chr1.2:1891517-1891536 | MS.gene24238:intron | 25.0% |
| ! | TATTATACCTTGATGAGAAA+TGG | + | chr1.2:1892264-1892283 | None:intergenic | 25.0% |
| ! | TTAGGTATATATCTTATTCC+AGG | - | chr1.2:1891541-1891560 | MS.gene24238:intron | 25.0% |
| !! | AATGTTTGGTCATTGAATTT+TGG | - | chr1.2:1891148-1891167 | MS.gene24238:CDS | 25.0% |
| !! | ATGTTTGAAATTTGATCAGA+TGG | - | chr1.2:1890092-1890111 | MS.gene24238:intron | 25.0% |
| !! | TGATATAAAGTACTTCAAAG+TGG | - | chr1.2:1892601-1892620 | MS.gene24238:CDS | 25.0% |
| !!! | TCATCTGTTAGCTTATTTTA+AGG | + | chr1.2:1892145-1892164 | None:intergenic | 25.0% |
| !!! | TGTTGAGCAAGTAATTTTTT+TGG | - | chr1.2:1891571-1891590 | MS.gene24238:intron | 25.0% |
| AAACAACCACATAAATGAGT+TGG | + | chr1.2:1890560-1890579 | None:intergenic | 30.0% | |
| AAACTCAGAGGTTAATAAAG+GGG | - | chr1.2:1890634-1890653 | MS.gene24238:intron | 30.0% | |
| ACAATAATTTAGGAGGAGAT+TGG | - | chr1.2:1892689-1892708 | MS.gene24238:CDS | 30.0% | |
| AGATATCCAACTCATTTATG+TGG | - | chr1.2:1890551-1890570 | MS.gene24238:intron | 30.0% | |
| AGTTAGAAGAAGGAAAACTT+TGG | - | chr1.2:1891818-1891837 | MS.gene24238:intron | 30.0% | |
| ATTACACATGCAATGTTCTT+TGG | + | chr1.2:1891492-1891511 | None:intergenic | 30.0% | |
| ATTCAAAAGACAATTGTGGT+TGG | - | chr1.2:1889787-1889806 | MS.gene24238:intron | 30.0% | |
| ATTCTACATCAATCAGTGTT+TGG | - | chr1.2:1892557-1892576 | MS.gene24238:CDS | 30.0% | |
| ATTGGAAGTTAATGTTACGT+AGG | + | chr1.2:1892238-1892257 | None:intergenic | 30.0% | |
| ATTTGGTATGTCCTTAATAG+TGG | + | chr1.2:1891453-1891472 | None:intergenic | 30.0% | |
| CAAACTCAGAGGTTAATAAA+GGG | - | chr1.2:1890633-1890652 | MS.gene24238:intron | 30.0% | |
| CATTTCTTAGCATGTAAGAA+TGG | - | chr1.2:1891793-1891812 | MS.gene24238:intron | 30.0% | |
| CTACTTTATCTGTTCAAGAT+TGG | - | chr1.2:1889926-1889945 | MS.gene24238:intron | 30.0% | |
| CTATAAACATATGATCAGTG+TGG | - | chr1.2:1891303-1891322 | MS.gene24238:intron | 30.0% | |
| TACATCTGCAGTCAAATTAA+GGG | + | chr1.2:1891424-1891443 | None:intergenic | 30.0% | |
| TCAAACTCAGAGGTTAATAA+AGG | - | chr1.2:1890632-1890651 | MS.gene24238:intron | 30.0% | |
| TCATTGGACAATAATTTAGG+AGG | - | chr1.2:1892682-1892701 | MS.gene24238:CDS | 30.0% | |
| TGTTACACCCAATAAAAAGT+TGG | - | chr1.2:1890981-1891000 | MS.gene24238:intron | 30.0% | |
| TTACATCTGCAGTCAAATTA+AGG | + | chr1.2:1891425-1891444 | None:intergenic | 30.0% | |
| TTCAAATTCTTCTTACAGAC+AGG | - | chr1.2:1889972-1889991 | MS.gene24238:intron | 30.0% | |
| TTCTACATCAATCAGTGTTT+GGG | - | chr1.2:1892558-1892577 | MS.gene24238:CDS | 30.0% | |
| ! | GAGAAATCAAATGAACGTTT+TGG | + | chr1.2:1889859-1889878 | None:intergenic | 30.0% |
| ! | TTTGGATGATGATGATTTCT+TGG | + | chr1.2:1892483-1892502 | None:intergenic | 30.0% |
| !! | AATATGAGGATTTGGTGATA+AGG | - | chr1.2:1891267-1891286 | MS.gene24238:intron | 30.0% |
| !! | GTGAGTGTTGAAAATATGTA+AGG | - | chr1.2:1890483-1890502 | MS.gene24238:intron | 30.0% |
| !! | TAGTTGAAAGTGTTGTGAAT+TGG | - | chr1.2:1890452-1890471 | MS.gene24238:intron | 30.0% |
| !! | TGCAATTTTAGCAGTAACAT+TGG | - | chr1.2:1889903-1889922 | MS.gene24238:intron | 30.0% |
| AAGAATGGAGAGTTAGAAGA+AGG | - | chr1.2:1891808-1891827 | MS.gene24238:intron | 35.0% | |
| AATGGATGATCTTACGTTTG+AGG | - | chr1.2:1890787-1890806 | MS.gene24238:intron | 35.0% | |
| AATGTTACGTAGGTGATACA+AGG | + | chr1.2:1892228-1892247 | None:intergenic | 35.0% | |
| AATTGTAGAGACAATCCTGT+TGG | + | chr1.2:1889881-1889900 | None:intergenic | 35.0% | |
| ACATCTGCAGTCAAATTAAG+GGG | + | chr1.2:1891423-1891442 | None:intergenic | 35.0% | |
| AGAACATTGCATGTGTAATC+TGG | - | chr1.2:1891493-1891512 | MS.gene24238:intron | 35.0% | |
| AGCTAACAGATGAGTTTGTA+TGG | - | chr1.2:1892152-1892171 | MS.gene24238:intron | 35.0% | |
| AGTGATAGAGTTTACGGTTT+AGG | - | chr1.2:1891523-1891542 | MS.gene24238:intron | 35.0% | |
| ATGGATGATCTTACGTTTGA+GGG | - | chr1.2:1890788-1890807 | MS.gene24238:intron | 35.0% | |
| ATTGTTGTGTCAAGTGTGAT+TGG | - | chr1.2:1890815-1890834 | MS.gene24238:intron | 35.0% | |
| ATTTGATCAGATGGAAGTTC+TGG | - | chr1.2:1890101-1890120 | MS.gene24238:intron | 35.0% | |
| CAATAACCCATTTCTCATCA+AGG | - | chr1.2:1892254-1892273 | MS.gene24238:CDS | 35.0% | |
| TTATTGGGTGTAACAGCTTA+GGG | + | chr1.2:1890976-1890995 | None:intergenic | 35.0% | |
| TTTATTGGGTGTAACAGCTT+AGG | + | chr1.2:1890977-1890996 | None:intergenic | 35.0% | |
| ! | ACATTTGCTAGGATGATGAT+TGG | - | chr1.2:1892201-1892220 | MS.gene24238:intron | 35.0% |
| ! | CACCATTTAGTAAGCATTGT+GGG | - | chr1.2:1890201-1890220 | MS.gene24238:intron | 35.0% |
| ! | GTTCATTTGATTTCTCCAAC+AGG | - | chr1.2:1889863-1889882 | MS.gene24238:intron | 35.0% |
| ! | TAAGAAGAATTTGAAGCCAC+TGG | + | chr1.2:1889967-1889986 | None:intergenic | 35.0% |
| ! | TTCCTATCTAAAGTACTCGA+GGG | - | chr1.2:1891678-1891697 | MS.gene24238:intron | 35.0% |
| ! | TTTCCTATCTAAAGTACTCG+AGG | - | chr1.2:1891677-1891696 | MS.gene24238:intron | 35.0% |
| !! | CTTGATGAGAAATGGGTTAT+TGG | + | chr1.2:1892256-1892275 | None:intergenic | 35.0% |
| !! | TTGAAAGTGTTGTGAATTGG+AGG | - | chr1.2:1890455-1890474 | MS.gene24238:intron | 35.0% |
| !!! | GGTTGTTTTTGACTCAATGT+GGG | - | chr1.2:1890572-1890591 | MS.gene24238:intron | 35.0% |
| !!! | TGGTTGTTTTTGACTCAATG+TGG | - | chr1.2:1890571-1890590 | MS.gene24238:intron | 35.0% |
| !!! | TTGTGGTTGGAGTTTTTTCA+TGG | - | chr1.2:1889800-1889819 | MS.gene24238:intron | 35.0% |
| AACCCTCGAGTACTTTAGAT+AGG | + | chr1.2:1891683-1891702 | None:intergenic | 40.0% | |
| AAGCCCATTCTTGCATTTGA+GGG | - | chr1.2:1891365-1891384 | MS.gene24238:intron | 40.0% | |
| ACTATTACAGGCTATGGGAT+TGG | - | chr1.2:1892394-1892413 | MS.gene24238:intron | 40.0% | |
| AGAATTTCGACACAAGGAGT+CGG | + | chr1.2:1890660-1890679 | None:intergenic | 40.0% | |
| ATGAAAAAGCTTCCACTCGA+GGG | - | chr1.2:1890747-1890766 | MS.gene24238:intron | 40.0% | |
| CCAATTCCTTCGACTATTAC+AGG | - | chr1.2:1892382-1892401 | MS.gene24238:intron | 40.0% | |
| CCACAATGCTTACTAAATGG+TGG | + | chr1.2:1890203-1890222 | None:intergenic | 40.0% | |
| CCTGTAATAGTCGAAGGAAT+TGG | + | chr1.2:1892385-1892404 | None:intergenic | 40.0% | |
| CTATTACAGGCTATGGGATT+GGG | - | chr1.2:1892395-1892414 | MS.gene24238:intron | 40.0% | |
| CTTCGACTATTACAGGCTAT+GGG | - | chr1.2:1892389-1892408 | MS.gene24238:intron | 40.0% | |
| CTTGCTCAACAAAAATAGCC+TGG | + | chr1.2:1891562-1891581 | None:intergenic | 40.0% | |
| GAAATGTCCAATTTGTCCAG+TGG | - | chr1.2:1889948-1889967 | MS.gene24238:intron | 40.0% | |
| GTCCCACAATGCTTACTAAA+TGG | + | chr1.2:1890206-1890225 | None:intergenic | 40.0% | |
| GTGTTGTGAATTGGAGGAAA+AGG | - | chr1.2:1890461-1890480 | MS.gene24238:intron | 40.0% | |
| TCGGAAAGAATTTCGACACA+AGG | + | chr1.2:1890666-1890685 | None:intergenic | 40.0% | |
| TCTAAAGGAGCTTGGTTACA+AGG | - | chr1.2:1891392-1891411 | MS.gene24238:intron | 40.0% | |
| TCTGAGTTTGACACCACATT+TGG | + | chr1.2:1890623-1890642 | None:intergenic | 40.0% | |
| TTGTGTCAAGTGTGATTGGA+TGG | - | chr1.2:1890819-1890838 | MS.gene24238:intron | 40.0% | |
| ! | AAATGTGGTGTCAAACTCAG+AGG | - | chr1.2:1890622-1890641 | MS.gene24238:intron | 40.0% |
| ! | ACTCAATGTGGGTGATCTTT+TGG | - | chr1.2:1890583-1890602 | MS.gene24238:intron | 40.0% |
| ! | AGCTGGCTTATGCTATCAAA+AGG | - | chr1.2:1890230-1890249 | MS.gene24238:CDS | 40.0% |
| ! | CCACCATTTAGTAAGCATTG+TGG | - | chr1.2:1890200-1890219 | MS.gene24238:intron | 40.0% |
| ! | TTTGAAGCCACTGGACAAAT+TGG | + | chr1.2:1889958-1889977 | None:intergenic | 40.0% |
| AACGGCAATGCAAGTGTATG+TGG | - | chr1.2:1890724-1890743 | MS.gene24238:intron | 45.0% | |
| ACACCACATTTGGCTAGTGA+AGG | + | chr1.2:1890613-1890632 | None:intergenic | 45.0% | |
| ACATACACTTGCATTGCCGT+TGG | + | chr1.2:1890725-1890744 | None:intergenic | 45.0% | |
| AGCTCCCTCAAATGCAAGAA+TGG | + | chr1.2:1891372-1891391 | None:intergenic | 45.0% | |
| CAAGCCCATTCTTGCATTTG+AGG | - | chr1.2:1891364-1891383 | MS.gene24238:intron | 45.0% | |
| CACCACATTTGGCTAGTGAA+GGG | + | chr1.2:1890612-1890631 | None:intergenic | 45.0% | |
| CCATAGCCTGTAATAGTCGA+AGG | + | chr1.2:1892391-1892410 | None:intergenic | 45.0% | |
| CCTTCGACTATTACAGGCTA+TGG | - | chr1.2:1892388-1892407 | MS.gene24238:intron | 45.0% | |
| GATGAAAAAGCTTCCACTCG+AGG | - | chr1.2:1890746-1890765 | MS.gene24238:intron | 45.0% | |
| GCATTTGAGGGAGCTTCTAA+AGG | - | chr1.2:1891377-1891396 | MS.gene24238:intron | 45.0% | |
| GCTCCCTCAAATGCAAGAAT+GGG | + | chr1.2:1891371-1891390 | None:intergenic | 45.0% | |
| TCCAGTTTAGATGATCCCTC+AGG | - | chr1.2:1890948-1890967 | MS.gene24238:intron | 45.0% | |
| TGAAAAAGCTTCCACTCGAG+GGG | - | chr1.2:1890748-1890767 | MS.gene24238:intron | 45.0% | |
| TGCAGCTGGTAAGTACATTC+TGG | - | chr1.2:1892420-1892439 | MS.gene24238:intron | 45.0% | |
| TTCCGACAATAGTGCTCAAG+CGG | - | chr1.2:1890680-1890699 | MS.gene24238:intron | 45.0% | |
| !!! | GGTGTGCTTGATGCCATTTT+TGG | + | chr1.2:1892501-1892520 | None:intergenic | 45.0% |
| !! | AATAACTTAATTATAATATA+AGG | - | chr1.2:1891976-1891995 | MS.gene24238:intron | 5.0% |
| !! | ATAACTTAATTATAATATAA+GGG | - | chr1.2:1891977-1891996 | MS.gene24238:intron | 5.0% |
| !!! | TATTTTAAAAATATTCTTTA+TGG | - | chr1.2:1891215-1891234 | MS.gene24238:intron | 5.0% |
| AAAAAGCTTCCACTCGAGGG+GGG | - | chr1.2:1890750-1890769 | MS.gene24238:intron | 50.0% | |
| ACACCACCAGCATCAAAAGC+AGG | - | chr1.2:1892516-1892535 | MS.gene24238:CDS | 50.0% | |
| AGCATTGTGGGACTGATAGC+TGG | - | chr1.2:1890213-1890232 | MS.gene24238:intron | 50.0% | |
| CTCCCTTCACTAGCCAAATG+TGG | - | chr1.2:1890607-1890626 | MS.gene24238:intron | 50.0% | |
| GAAAAAGCTTCCACTCGAGG+GGG | - | chr1.2:1890749-1890768 | MS.gene24238:intron | 50.0% | |
| GCCTGAGGGATCATCTAAAC+TGG | + | chr1.2:1890952-1890971 | None:intergenic | 50.0% | |
| GCTCCATTGAACACGTCCAA+CGG | - | chr1.2:1890706-1890725 | MS.gene24238:intron | 50.0% | |
| TAACAGCTTAGGGAGCCTGA+GGG | + | chr1.2:1890966-1890985 | None:intergenic | 50.0% | |
| TATGGGATTGGGTTTGCAGC+TGG | - | chr1.2:1892406-1892425 | MS.gene24238:intron | 50.0% | |
| TGATCAGTGTGGCTCAGAGA+TGG | - | chr1.2:1891314-1891333 | MS.gene24238:intron | 50.0% | |
| TTGCCGTTGGACGTGTTCAA+TGG | + | chr1.2:1890712-1890731 | None:intergenic | 50.0% | |
| ! | AGGGAGCTTCTAAAGGAGCT+TGG | - | chr1.2:1891384-1891403 | MS.gene24238:intron | 50.0% |
| !! | AGAGATGGTGGGAGCAGTAT+GGG | - | chr1.2:1891329-1891348 | MS.gene24238:intron | 50.0% |
| !! | AGCTGTCCTGCTTTTGATGC+TGG | + | chr1.2:1892525-1892544 | None:intergenic | 50.0% |
| !! | TGTCCTGCTTTTGATGCTGG+TGG | + | chr1.2:1892522-1892541 | None:intergenic | 50.0% |
| CAGTGTGGCTCAGAGATGGT+GGG | - | chr1.2:1891318-1891337 | MS.gene24238:intron | 55.0% | |
| CGCCGCTTGAGCACTATTGT+CGG | + | chr1.2:1890685-1890704 | None:intergenic | 55.0% | |
| GGGGTGCATAGTCGGATGAA+TGG | - | chr1.2:1890769-1890788 | MS.gene24238:intron | 55.0% | |
| GTAACAGCTTAGGGAGCCTG+AGG | + | chr1.2:1890967-1890986 | None:intergenic | 55.0% | |
| TCAGTGTGGCTCAGAGATGG+TGG | - | chr1.2:1891317-1891336 | MS.gene24238:intron | 55.0% | |
| !! | CAGAGATGGTGGGAGCAGTA+TGG | - | chr1.2:1891328-1891347 | MS.gene24238:intron | 55.0% |
| ! | ACTCGAGGGGGGTGCATAGT+CGG | - | chr1.2:1890761-1890780 | MS.gene24238:intron | 60.0% |
| GACTATGCACCCCCCTCGAG+TGG | + | chr1.2:1890762-1890781 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 1889775 | 1892727 | 1889775 | ID=MS.gene24238 |
| chr1.2 | mRNA | 1889775 | 1892727 | 1889775 | ID=MS.gene24238.t1;Parent=MS.gene24238 |
| chr1.2 | exon | 1892509 | 1892727 | 1892509 | ID=MS.gene24238.t1.exon1;Parent=MS.gene24238.t1 |
| chr1.2 | CDS | 1892509 | 1892727 | 1892509 | ID=cds.MS.gene24238.t1;Parent=MS.gene24238.t1 |
| chr1.2 | exon | 1892251 | 1892391 | 1892251 | ID=MS.gene24238.t1.exon2;Parent=MS.gene24238.t1 |
| chr1.2 | CDS | 1892251 | 1892391 | 1892251 | ID=cds.MS.gene24238.t1;Parent=MS.gene24238.t1 |
| chr1.2 | exon | 1891062 | 1891181 | 1891062 | ID=MS.gene24238.t1.exon3;Parent=MS.gene24238.t1 |
| chr1.2 | CDS | 1891062 | 1891181 | 1891062 | ID=cds.MS.gene24238.t1;Parent=MS.gene24238.t1 |
| chr1.2 | exon | 1890227 | 1890322 | 1890227 | ID=MS.gene24238.t1.exon4;Parent=MS.gene24238.t1 |
| chr1.2 | CDS | 1890227 | 1890322 | 1890227 | ID=cds.MS.gene24238.t1;Parent=MS.gene24238.t1 |
| chr1.2 | exon | 1890075 | 1890098 | 1890075 | ID=MS.gene24238.t1.exon5;Parent=MS.gene24238.t1 |
| chr1.2 | CDS | 1890075 | 1890098 | 1890075 | ID=cds.MS.gene24238.t1;Parent=MS.gene24238.t1 |
| chr1.2 | exon | 1889775 | 1889801 | 1889775 | ID=MS.gene24238.t1.exon6;Parent=MS.gene24238.t1 |
| chr1.2 | CDS | 1889775 | 1889801 | 1889775 | ID=cds.MS.gene24238.t1;Parent=MS.gene24238.t1 |
| Gene Sequence |
| Protein sequence |
