Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27261.t1 | XP_003589322.2 | 99 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 9.00E-109 | 402.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27261.t1 | Q6ZRR5 | 26.6 | 192 | 139 | 2 | 9 | 198 | 9 | 200 | 1.8e-17 | 90.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27261.t1 | G7I5C1 | 99.0 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 6.5e-109 | 402.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene27261 | 0.81747 | 3.24E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene27261 | 0.804948 | 1.69E-49 | -1.69E-46 |
| MS.gene049232 | MS.gene27261 | 0.806309 | 8.76E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene27261 | 0.801665 | 8.09E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene27261 | 0.851689 | 7.54E-61 | -1.69E-46 |
| MS.gene049396 | MS.gene27261 | 0.810656 | 1.03E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene27261 | 0.820203 | 7.77E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene27261 | 0.807591 | 4.69E-50 | -1.69E-46 |
| MS.gene050380 | MS.gene27261 | -0.804101 | 2.54E-49 | -1.69E-46 |
| MS.gene050499 | MS.gene27261 | 0.851537 | 8.32E-61 | -1.69E-46 |
| MS.gene050520 | MS.gene27261 | 0.834032 | 3.79E-56 | -1.69E-46 |
| MS.gene050593 | MS.gene27261 | 0.802996 | 4.30E-49 | -1.69E-46 |
| MS.gene050662 | MS.gene27261 | 0.829029 | 6.47E-55 | -1.69E-46 |
| MS.gene050686 | MS.gene27261 | 0.825837 | 3.77E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene27261 | 0.854592 | 1.11E-61 | -1.69E-46 |
| MS.gene05105 | MS.gene27261 | 0.820265 | 7.52E-53 | -1.69E-46 |
| MS.gene051255 | MS.gene27261 | 0.817801 | 2.73E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene27261 | 0.814062 | 1.87E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene27261 | 0.86074 | 1.67E-63 | -1.69E-46 |
| MS.gene051874 | MS.gene27261 | 0.800813 | 1.21E-48 | -1.69E-46 |
| MS.gene052271 | MS.gene27261 | 0.819075 | 1.40E-52 | -1.69E-46 |
| MS.gene052421 | MS.gene27261 | 0.806872 | 6.66E-50 | -1.69E-46 |
| MS.gene052632 | MS.gene27261 | 0.824382 | 8.32E-54 | -1.69E-46 |
| MS.gene052916 | MS.gene27261 | 0.819417 | 1.17E-52 | -1.69E-46 |
| MS.gene053018 | MS.gene27261 | 0.840569 | 8.04E-58 | -1.69E-46 |
| MS.gene053213 | MS.gene27261 | 0.826612 | 2.47E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene27261 | 0.813373 | 2.65E-51 | -1.69E-46 |
| MS.gene053449 | MS.gene27261 | 0.825494 | 4.55E-54 | -1.69E-46 |
| MS.gene053505 | MS.gene27261 | 0.832104 | 1.14E-55 | -1.69E-46 |
| MS.gene053574 | MS.gene27261 | 0.832006 | 1.21E-55 | -1.69E-46 |
| MS.gene053758 | MS.gene27261 | 0.806871 | 6.66E-50 | -1.69E-46 |
| MS.gene053813 | MS.gene27261 | 0.839069 | 1.97E-57 | -1.69E-46 |
| MS.gene053916 | MS.gene27261 | 0.801334 | 9.46E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene27261 | 0.849218 | 3.72E-60 | -1.69E-46 |
| MS.gene055224 | MS.gene27261 | 0.804813 | 1.80E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene27261 | 0.847852 | 8.90E-60 | -1.69E-46 |
| MS.gene055909 | MS.gene27261 | 0.81407 | 1.86E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene27261 | 0.812353 | 4.43E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene27261 | 0.818492 | 1.91E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene27261 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene27261 | 0.823361 | 1.44E-53 | -1.69E-46 |
| MS.gene056422 | MS.gene27261 | 0.822573 | 2.20E-53 | -1.69E-46 |
| MS.gene056448 | MS.gene27261 | 0.829011 | 6.53E-55 | -1.69E-46 |
| MS.gene056487 | MS.gene27261 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene27261 | 0.810841 | 9.43E-51 | -1.69E-46 |
| MS.gene056549 | MS.gene27261 | 0.80655 | 7.79E-50 | -1.69E-46 |
| MS.gene056611 | MS.gene27261 | 0.824017 | 1.01E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene27261 | 0.801567 | 8.47E-49 | -1.69E-46 |
| MS.gene056942 | MS.gene27261 | 0.821894 | 3.17E-53 | -1.69E-46 |
| MS.gene057076 | MS.gene27261 | 0.815172 | 1.06E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene27261 | 0.80219 | 6.31E-49 | -1.69E-46 |
| MS.gene057285 | MS.gene27261 | 0.813968 | 1.96E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene27261 | 0.800898 | 1.16E-48 | -1.69E-46 |
| MS.gene057416 | MS.gene27261 | 0.817106 | 3.92E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene27261 | 0.803113 | 4.07E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene27261 | 0.833365 | 5.56E-56 | -1.69E-46 |
| MS.gene058459 | MS.gene27261 | 0.800138 | 1.66E-48 | -1.69E-46 |
| MS.gene058773 | MS.gene27261 | 0.807508 | 4.89E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene27261 | 0.825909 | 3.62E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene27261 | 0.806619 | 7.53E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene27261 | 0.84317 | 1.65E-58 | -1.69E-46 |
| MS.gene059674 | MS.gene27261 | 0.816169 | 6.35E-52 | -1.69E-46 |
| MS.gene059711 | MS.gene27261 | 0.86366 | 2.13E-64 | -1.69E-46 |
| MS.gene059718 | MS.gene27261 | 0.814911 | 1.21E-51 | -1.69E-46 |
| MS.gene059801 | MS.gene27261 | 0.800689 | 1.28E-48 | -1.69E-46 |
| MS.gene05986 | MS.gene27261 | 0.803402 | 3.55E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene27261 | 0.853783 | 1.90E-61 | -1.69E-46 |
| MS.gene060193 | MS.gene27261 | 0.807585 | 4.71E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene27261 | 0.853149 | 2.89E-61 | -1.69E-46 |
| MS.gene060804 | MS.gene27261 | 0.810219 | 1.29E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene27261 | 0.818682 | 1.73E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene27261 | 0.853756 | 1.94E-61 | -1.69E-46 |
| MS.gene061041 | MS.gene27261 | 0.8213 | 4.34E-53 | -1.69E-46 |
| MS.gene061134 | MS.gene27261 | 0.836743 | 7.83E-57 | -1.69E-46 |
| MS.gene061171 | MS.gene27261 | 0.817591 | 3.05E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene27261 | 0.83772 | 4.40E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90716 | MS.gene27261 | PPI |
| MS.gene26999 | MS.gene27261 | PPI |
| MS.gene24238 | MS.gene27261 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27261.t1 | MTR_1g022950 | 99.000 | 200 | 2 | 0 | 1 | 200 | 1 | 200 | 3.60e-149 | 414 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27261.t1 | AT1G35180 | 63.184 | 201 | 72 | 1 | 2 | 200 | 3 | 203 | 3.25e-96 | 280 |
| MS.gene27261.t1 | AT1G35170 | 64.865 | 185 | 65 | 0 | 16 | 200 | 19 | 203 | 4.43e-91 | 266 |
| MS.gene27261.t1 | AT1G45010 | 61.275 | 204 | 77 | 1 | 2 | 203 | 3 | 206 | 4.38e-87 | 256 |
| MS.gene27261.t1 | AT1G35170 | 62.431 | 181 | 68 | 0 | 16 | 196 | 19 | 199 | 5.53e-85 | 251 |
| MS.gene27261.t1 | AT1G45010 | 56.938 | 209 | 88 | 1 | 2 | 208 | 3 | 211 | 3.54e-82 | 244 |
| MS.gene27261.t1 | AT1G35170 | 65.753 | 146 | 50 | 0 | 16 | 161 | 19 | 164 | 7.66e-72 | 216 |
| MS.gene27261.t1 | AT1G35170 | 65.753 | 146 | 50 | 0 | 16 | 161 | 19 | 164 | 7.66e-72 | 216 |
| MS.gene27261.t1 | AT1G45010 | 62.346 | 162 | 59 | 1 | 2 | 161 | 3 | 164 | 6.02e-69 | 208 |
| MS.gene27261.t1 | AT1G45010 | 63.846 | 130 | 47 | 0 | 74 | 203 | 1 | 130 | 5.23e-60 | 185 |
Find 45 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATCTGCAGTCAAATTA+AGG | 0.189859 | 1.1:+1600854 | None:intergenic |
| CTTGATGAGAAATGGGTTAT+TGG | 0.254552 | 1.1:+1600023 | None:intergenic |
| TTTGAAGCCACTGGACAAAT+TGG | 0.271253 | 1.1:+1602324 | None:intergenic |
| GAGAAATCAAATGAACGTTT+TGG | 0.301030 | 1.1:+1602423 | None:intergenic |
| GTCCCACAATGCTTACTAAA+TGG | 0.321372 | 1.1:+1602076 | None:intergenic |
| TATTATACCTTGATGAGAAA+TGG | 0.337195 | 1.1:+1600015 | None:intergenic |
| ATTTGATCAGATGGAAGTTC+TGG | 0.337359 | 1.1:-1602178 | MS.gene27261:intron |
| CAGAGATGGTGGGAGCAGTA+TGG | 0.350230 | 1.1:-1600948 | MS.gene27261:CDS |
| CTACTCTATCTGTTCAAGAT+TGG | 0.361261 | 1.1:-1602353 | MS.gene27261:CDS |
| CTATTACAGGCTATGGGATT+GGG | 0.373800 | 1.1:-1599881 | MS.gene27261:intron |
| ACAATAATTTAGGAGGAGAT+TGG | 0.391152 | 1.1:-1599587 | MS.gene27261:intron |
| ACATTTGCTAGGATGATGAT+TGG | 0.391517 | 1.1:-1600075 | MS.gene27261:CDS |
| TACATCTGCAGTCAAATTAA+GGG | 0.403745 | 1.1:+1600855 | None:intergenic |
| ATTATACCTTGATGAGAAAT+GGG | 0.416729 | 1.1:+1600016 | None:intergenic |
| AGCTCCCTCAAATGCAAGAA+TGG | 0.423674 | 1.1:+1600907 | None:intergenic |
| ACTATTACAGGCTATGGGAT+TGG | 0.428555 | 1.1:-1599882 | MS.gene27261:intron |
| TTCAAATTCTTCTTACAGAC+AGG | 0.438036 | 1.1:-1602307 | MS.gene27261:intron |
| CAAGCCCATTCTTGCATTTG+AGG | 0.445389 | 1.1:-1600912 | MS.gene27261:CDS |
| TCTAAAGGAGCTTGGTTACA+AGG | 0.454047 | 1.1:-1600884 | MS.gene27261:CDS |
| GCATTTGAGGGAGCTTCTAA+AGG | 0.464317 | 1.1:-1600899 | MS.gene27261:CDS |
| AAGCCCATTCTTGCATTTGA+GGG | 0.465855 | 1.1:-1600911 | MS.gene27261:CDS |
| CACCATTTAGTAAGCATTGT+GGG | 0.466117 | 1.1:-1602078 | MS.gene27261:CDS |
| CAATAACCCATTTCTCATCA+AGG | 0.469006 | 1.1:-1600022 | MS.gene27261:intron |
| TATGGGATTGGGTTTGCAGC+TGG | 0.477409 | 1.1:-1599870 | MS.gene27261:intron |
| AGCATTGTGGGACTGATAGC+TGG | 0.478228 | 1.1:-1602066 | MS.gene27261:CDS |
| GCTCCCTCAAATGCAAGAAT+GGG | 0.481370 | 1.1:+1600908 | None:intergenic |
| CTTCGACTATTACAGGCTAT+GGG | 0.490448 | 1.1:-1599887 | MS.gene27261:intron |
| AGGGAGCTTCTAAAGGAGCT+TGG | 0.499104 | 1.1:-1600892 | MS.gene27261:CDS |
| AATTGTAGATACAATTCTGT+TGG | 0.499670 | 1.1:+1602401 | None:intergenic |
| TAAGAAGAATTTGAAGCCAC+TGG | 0.506715 | 1.1:+1602315 | None:intergenic |
| AGCTGGCTTATGCTATCAAA+AGG | 0.510458 | 1.1:-1602049 | MS.gene27261:intron |
| CTTCAATATTTACATTTGCT+AGG | 0.511008 | 1.1:-1600086 | MS.gene27261:CDS |
| AGAGATGGTGGGAGCAGTAT+GGG | 0.512111 | 1.1:-1600947 | MS.gene27261:CDS |
| ATTCAAAAGACAATTGTGGT+TGG | 0.543048 | 1.1:-1602492 | MS.gene27261:CDS |
| GATCATAAATTAGATATGAC+AGG | 0.545515 | 1.1:+1602148 | None:intergenic |
| ATTGGAAGTTAATGTTACGT+AGG | 0.557867 | 1.1:+1600041 | None:intergenic |
| GAAATGTCCAATTTGTCCAG+TGG | 0.588096 | 1.1:-1602331 | MS.gene27261:CDS |
| CCACAATGCTTACTAAATGG+TGG | 0.601229 | 1.1:+1602079 | None:intergenic |
| CCACCATTTAGTAAGCATTG+TGG | 0.612304 | 1.1:-1602079 | MS.gene27261:CDS |
| AATGTTACGTAGGTGATACA+AGG | 0.616770 | 1.1:+1600051 | None:intergenic |
| ATATATTCAAAAGACAATTG+TGG | 0.625016 | 1.1:-1602496 | MS.gene27261:CDS |
| ACATCTGCAGTCAAATTAAG+GGG | 0.627723 | 1.1:+1600856 | None:intergenic |
| TCAGTGTGGCTCAGAGATGG+TGG | 0.640532 | 1.1:-1600959 | MS.gene27261:intron |
| CAGTGTGGCTCAGAGATGGT+GGG | 0.652161 | 1.1:-1600958 | MS.gene27261:CDS |
| TGATCAGTGTGGCTCAGAGA+TGG | 0.653705 | 1.1:-1600962 | MS.gene27261:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTTTTAAAAATTT+TGG | + | chr1.1:1601818-1601837 | None:intergenic | 0.0% |
| !! | GTACAAAATAAATAAATATT+TGG | + | chr1.1:1601269-1601288 | None:intergenic | 10.0% |
| !! | TTAAAATAAAATATGCAAAT+TGG | + | chr1.1:1601002-1601021 | None:intergenic | 10.0% |
| !!! | AATCTAATATTTTAAGATTT+TGG | - | chr1.1:1600682-1600701 | MS.gene27261:intron | 10.0% |
| !! | AATAGAAAAACAAGATATTT+AGG | + | chr1.1:1601458-1601477 | None:intergenic | 15.0% |
| !! | ATATATCATTTGTACTTAAT+TGG | - | chr1.1:1599851-1599870 | MS.gene27261:intron | 15.0% |
| !! | ATTTGATGAAAAATTCAATT+GGG | - | chr1.1:1599963-1599982 | MS.gene27261:intron | 15.0% |
| !! | TATTTGATGAAAAATTCAAT+TGG | - | chr1.1:1599962-1599981 | MS.gene27261:intron | 15.0% |
| !! | TTTAATAATATGATACTCAT+TGG | - | chr1.1:1602139-1602158 | MS.gene27261:CDS | 15.0% |
| !!! | GTTTAAAATATAAAAACGAA+GGG | + | chr1.1:1602104-1602123 | None:intergenic | 15.0% |
| !!! | TGTTTAAAATATAAAAACGA+AGG | + | chr1.1:1602105-1602124 | None:intergenic | 15.0% |
| !! | AAACATTTAATCTATCTACA+TGG | + | chr1.1:1600934-1600953 | None:intergenic | 20.0% |
| !! | AAACTCTAAATTATTCTAAC+AGG | + | chr1.1:1600223-1600242 | None:intergenic | 20.0% |
| !! | AAGTACTTTATATCATTCAT+TGG | + | chr1.1:1602395-1602414 | None:intergenic | 20.0% |
| !! | ATATATTCAAAAGACAATTG+TGG | - | chr1.1:1599579-1599598 | MS.gene27261:intron | 20.0% |
| !! | ATGTAGATAGATTAAATGTT+TGG | - | chr1.1:1600933-1600952 | MS.gene27261:CDS | 20.0% |
| !! | ATTGAAAATAGAACTAGATT+TGG | + | chr1.1:1601426-1601445 | None:intergenic | 20.0% |
| !! | TATTCATTGGACAATAATTT+AGG | - | chr1.1:1602478-1602497 | MS.gene27261:CDS | 20.0% |
| !! | TCAAGAAATTTAATGCATTA+AGG | - | chr1.1:1600311-1600330 | MS.gene27261:intron | 20.0% |
| !! | TGTTAATTAATATGAGGATT+TGG | - | chr1.1:1601058-1601077 | MS.gene27261:intron | 20.0% |
| !! | TTATAAATCATGACACTAAT+TGG | + | chr1.1:1601870-1601889 | None:intergenic | 20.0% |
| !! | TTTCGTACATATATATTCAT+TGG | - | chr1.1:1602465-1602484 | MS.gene27261:CDS | 20.0% |
| !!! | AAGATTTTGGATAAAAAATG+TGG | - | chr1.1:1600695-1600714 | MS.gene27261:intron | 20.0% |
| !!! | AATAGTTTGAAACAATATGA+TGG | - | chr1.1:1601695-1601714 | MS.gene27261:intron | 20.0% |
| !!! | AATTCTATCCAACTTTTTAT+TGG | + | chr1.1:1600791-1600810 | None:intergenic | 20.0% |
| !!! | ATTCTATCCAACTTTTTATT+GGG | + | chr1.1:1600790-1600809 | None:intergenic | 20.0% |
| !!! | ATTTAATGCATTAAGGTTTT+TGG | - | chr1.1:1600318-1600337 | MS.gene27261:intron | 20.0% |
| !!! | CTTTTGTGTTAATTAATATG+AGG | - | chr1.1:1601052-1601071 | MS.gene27261:intron | 20.0% |
| !!! | TTTGGTTGATTTAAAAATAG+AGG | + | chr1.1:1601408-1601427 | None:intergenic | 20.0% |
| ! | AAATCATCATCATCCAAAAA+TGG | - | chr1.1:1602284-1602303 | MS.gene27261:intron | 25.0% |
| ! | AAGCAAAATAATGATTGAAG+GGG | + | chr1.1:1602426-1602445 | None:intergenic | 25.0% |
| ! | AATTGTAGATACAATTCTGT+TGG | + | chr1.1:1599677-1599696 | None:intergenic | 25.0% |
| ! | ACAAGCAAAATAATGATTGA+AGG | + | chr1.1:1602428-1602447 | None:intergenic | 25.0% |
| ! | ATGTAAGTAAACCACTATTA+AGG | - | chr1.1:1601238-1601257 | MS.gene27261:intron | 25.0% |
| ! | ATTATACCTTGATGAGAAAT+GGG | + | chr1.1:1602062-1602081 | None:intergenic | 25.0% |
| ! | CAAGCAAAATAATGATTGAA+GGG | + | chr1.1:1602427-1602446 | None:intergenic | 25.0% |
| ! | CTTCAATATTTACATTTGCT+AGG | - | chr1.1:1601989-1602008 | MS.gene27261:intron | 25.0% |
| ! | GATCATAAATTAGATATGAC+AGG | + | chr1.1:1599930-1599949 | None:intergenic | 25.0% |
| ! | TAAGAAAGTGATAGAGTTTA+CGG | - | chr1.1:1601316-1601335 | MS.gene27261:intron | 25.0% |
| ! | TATTATACCTTGATGAGAAA+TGG | + | chr1.1:1602063-1602082 | None:intergenic | 25.0% |
| ! | TTAGGTATATATCTTATTCC+AGG | - | chr1.1:1601340-1601359 | MS.gene27261:intron | 25.0% |
| !! | AATGTTTGGTCATTGAATTT+TGG | - | chr1.1:1600947-1600966 | MS.gene27261:CDS | 25.0% |
| !! | ATGTTTGAAATTTGATCAGA+TGG | - | chr1.1:1599888-1599907 | MS.gene27261:intron | 25.0% |
| !! | TGATATAAAGTACTTCAAAG+TGG | - | chr1.1:1602400-1602419 | MS.gene27261:CDS | 25.0% |
| !!! | TCATCTGTTAGCTTATTTTA+AGG | + | chr1.1:1601944-1601963 | None:intergenic | 25.0% |
| !!! | TGTTGAGCAAGTAATTTTTT+TGG | - | chr1.1:1601370-1601389 | MS.gene27261:intron | 25.0% |
| AAACAACCACATAAATGAGT+TGG | + | chr1.1:1600359-1600378 | None:intergenic | 30.0% | |
| AAACTCAGAGGTTAATAAAG+GGG | - | chr1.1:1600433-1600452 | MS.gene27261:intron | 30.0% | |
| ACAATAATTTAGGAGGAGAT+TGG | - | chr1.1:1602488-1602507 | MS.gene27261:CDS | 30.0% | |
| AGATATCCAACTCATTTATG+TGG | - | chr1.1:1600350-1600369 | MS.gene27261:intron | 30.0% | |
| AGTTAGAAGAAGGAAAACTT+TGG | - | chr1.1:1601617-1601636 | MS.gene27261:intron | 30.0% | |
| ATTACACATGCAATGTTCTT+TGG | + | chr1.1:1601291-1601310 | None:intergenic | 30.0% | |
| ATTCAAAAGACAATTGTGGT+TGG | - | chr1.1:1599583-1599602 | MS.gene27261:intron | 30.0% | |
| ATTCTACATCAATCAGTGTT+TGG | - | chr1.1:1602356-1602375 | MS.gene27261:CDS | 30.0% | |
| ATTGGAAGTTAATGTTACGT+AGG | + | chr1.1:1602037-1602056 | None:intergenic | 30.0% | |
| ATTTGGTATGTCCTTAATAG+TGG | + | chr1.1:1601252-1601271 | None:intergenic | 30.0% | |
| CAAACTCAGAGGTTAATAAA+GGG | - | chr1.1:1600432-1600451 | MS.gene27261:intron | 30.0% | |
| CATTTCTTAGCATGTAAGAA+TGG | - | chr1.1:1601592-1601611 | MS.gene27261:intron | 30.0% | |
| CTATAAACATATGATCAGTG+TGG | - | chr1.1:1601102-1601121 | MS.gene27261:intron | 30.0% | |
| TACATCTGCAGTCAAATTAA+GGG | + | chr1.1:1601223-1601242 | None:intergenic | 30.0% | |
| TCAAACTCAGAGGTTAATAA+AGG | - | chr1.1:1600431-1600450 | MS.gene27261:intron | 30.0% | |
| TCATTGGACAATAATTTAGG+AGG | - | chr1.1:1602481-1602500 | MS.gene27261:CDS | 30.0% | |
| TGTTACACCCAATAAAAAGT+TGG | - | chr1.1:1600780-1600799 | MS.gene27261:intron | 30.0% | |
| TTACATCTGCAGTCAAATTA+AGG | + | chr1.1:1601224-1601243 | None:intergenic | 30.0% | |
| TTCAAATTCTTCTTACAGAC+AGG | - | chr1.1:1599768-1599787 | MS.gene27261:intron | 30.0% | |
| TTCTACATCAATCAGTGTTT+GGG | - | chr1.1:1602357-1602376 | MS.gene27261:CDS | 30.0% | |
| ! | CAACAACTTTTCTTGTAATG+AGG | - | chr1.1:1599620-1599639 | MS.gene27261:intron | 30.0% |
| ! | GAGAAATCAAATGAACGTTT+TGG | + | chr1.1:1599655-1599674 | None:intergenic | 30.0% |
| ! | TTTGGATGATGATGATTTCT+TGG | + | chr1.1:1602282-1602301 | None:intergenic | 30.0% |
| !! | AATATGAGGATTTGGTGATA+AGG | - | chr1.1:1601066-1601085 | MS.gene27261:intron | 30.0% |
| !! | GTGAGTGTTGAAAATATGTA+AGG | - | chr1.1:1600282-1600301 | MS.gene27261:intron | 30.0% |
| !! | TAGTTGAAAGTGTTGTGAAT+TGG | - | chr1.1:1600251-1600270 | MS.gene27261:intron | 30.0% |
| !! | TGCAATTTTAGCAGTAACAT+TGG | - | chr1.1:1599699-1599718 | MS.gene27261:intron | 30.0% |
| AAGAATGGAGAGTTAGAAGA+AGG | - | chr1.1:1601607-1601626 | MS.gene27261:intron | 35.0% | |
| AATGGATGATCTTACGTTTG+AGG | - | chr1.1:1600586-1600605 | MS.gene27261:intron | 35.0% | |
| AATGTTACGTAGGTGATACA+AGG | + | chr1.1:1602027-1602046 | None:intergenic | 35.0% | |
| ACATCTGCAGTCAAATTAAG+GGG | + | chr1.1:1601222-1601241 | None:intergenic | 35.0% | |
| AGAACATTGCATGTGTAATC+TGG | - | chr1.1:1601292-1601311 | MS.gene27261:intron | 35.0% | |
| AGCTAACAGATGAGTTTGTA+TGG | - | chr1.1:1601951-1601970 | MS.gene27261:intron | 35.0% | |
| AGTGATAGAGTTTACGGTTT+AGG | - | chr1.1:1601322-1601341 | MS.gene27261:intron | 35.0% | |
| ATGGATGATCTTACGTTTGA+GGG | - | chr1.1:1600587-1600606 | MS.gene27261:intron | 35.0% | |
| ATTGTTGTGTCAAGTGTGAT+TGG | - | chr1.1:1600614-1600633 | MS.gene27261:intron | 35.0% | |
| ATTTGATCAGATGGAAGTTC+TGG | - | chr1.1:1599897-1599916 | MS.gene27261:intron | 35.0% | |
| CAATAACCCATTTCTCATCA+AGG | - | chr1.1:1602053-1602072 | MS.gene27261:CDS | 35.0% | |
| CTACTCTATCTGTTCAAGAT+TGG | - | chr1.1:1599722-1599741 | MS.gene27261:intron | 35.0% | |
| TTATTGGGTGTAACAGCTTA+GGG | + | chr1.1:1600775-1600794 | None:intergenic | 35.0% | |
| TTTATTGGGTGTAACAGCTT+AGG | + | chr1.1:1600776-1600795 | None:intergenic | 35.0% | |
| ! | ACATTTGCTAGGATGATGAT+TGG | - | chr1.1:1602000-1602019 | MS.gene27261:intron | 35.0% |
| ! | CACCATTTAGTAAGCATTGT+GGG | - | chr1.1:1599997-1600016 | MS.gene27261:intron | 35.0% |
| ! | TAAGAAGAATTTGAAGCCAC+TGG | + | chr1.1:1599763-1599782 | None:intergenic | 35.0% |
| ! | TTCCTATCTAAAGTACTCGA+GGG | - | chr1.1:1601477-1601496 | MS.gene27261:intron | 35.0% |
| ! | TTTCCTATCTAAAGTACTCG+AGG | - | chr1.1:1601476-1601495 | MS.gene27261:intron | 35.0% |
| !! | CTTGATGAGAAATGGGTTAT+TGG | + | chr1.1:1602055-1602074 | None:intergenic | 35.0% |
| !! | TTGAAAGTGTTGTGAATTGG+AGG | - | chr1.1:1600254-1600273 | MS.gene27261:intron | 35.0% |
| !!! | GGTTGTTTTTGACTCAATGT+GGG | - | chr1.1:1600371-1600390 | MS.gene27261:intron | 35.0% |
| !!! | TGGTTGTTTTTGACTCAATG+TGG | - | chr1.1:1600370-1600389 | MS.gene27261:intron | 35.0% |
| !!! | TTGTGGTTGGAGTTTTTTCA+TGG | - | chr1.1:1599596-1599615 | MS.gene27261:intron | 35.0% |
| AACCCTCGAGTACTTTAGAT+AGG | + | chr1.1:1601482-1601501 | None:intergenic | 40.0% | |
| AAGCCCATTCTTGCATTTGA+GGG | - | chr1.1:1601164-1601183 | MS.gene27261:intron | 40.0% | |
| ACTATTACAGGCTATGGGAT+TGG | - | chr1.1:1602193-1602212 | MS.gene27261:intron | 40.0% | |
| AGAATTTCGACACAAGGAGT+CGG | + | chr1.1:1600459-1600478 | None:intergenic | 40.0% | |
| ATGAAAAAGCTTCCACTCGA+GGG | - | chr1.1:1600546-1600565 | MS.gene27261:intron | 40.0% | |
| CCAATTCCTTCGACTATTAC+AGG | - | chr1.1:1602181-1602200 | MS.gene27261:intron | 40.0% | |
| CCACAATGCTTACTAAATGG+TGG | + | chr1.1:1599999-1600018 | None:intergenic | 40.0% | |
| CCTGTAATAGTCGAAGGAAT+TGG | + | chr1.1:1602184-1602203 | None:intergenic | 40.0% | |
| CTATTACAGGCTATGGGATT+GGG | - | chr1.1:1602194-1602213 | MS.gene27261:intron | 40.0% | |
| CTTCGACTATTACAGGCTAT+GGG | - | chr1.1:1602188-1602207 | MS.gene27261:intron | 40.0% | |
| CTTGCTCAACAAAAATAGCC+TGG | + | chr1.1:1601361-1601380 | None:intergenic | 40.0% | |
| GAAATGTCCAATTTGTCCAG+TGG | - | chr1.1:1599744-1599763 | MS.gene27261:intron | 40.0% | |
| GTCCCACAATGCTTACTAAA+TGG | + | chr1.1:1600002-1600021 | None:intergenic | 40.0% | |
| GTGTTGTGAATTGGAGGAAA+AGG | - | chr1.1:1600260-1600279 | MS.gene27261:intron | 40.0% | |
| TCGGAAAGAATTTCGACACA+AGG | + | chr1.1:1600465-1600484 | None:intergenic | 40.0% | |
| TCTAAAGGAGCTTGGTTACA+AGG | - | chr1.1:1601191-1601210 | MS.gene27261:intron | 40.0% | |
| TCTGAGTTTGACACCACATT+TGG | + | chr1.1:1600422-1600441 | None:intergenic | 40.0% | |
| TTGTGTCAAGTGTGATTGGA+TGG | - | chr1.1:1600618-1600637 | MS.gene27261:intron | 40.0% | |
| ! | AAATGTGGTGTCAAACTCAG+AGG | - | chr1.1:1600421-1600440 | MS.gene27261:intron | 40.0% |
| ! | ACTCAATGTGGGTGATCTTT+TGG | - | chr1.1:1600382-1600401 | MS.gene27261:intron | 40.0% |
| ! | AGCTGGCTTATGCTATCAAA+AGG | - | chr1.1:1600026-1600045 | MS.gene27261:CDS | 40.0% |
| ! | CCACCATTTAGTAAGCATTG+TGG | - | chr1.1:1599996-1600015 | MS.gene27261:intron | 40.0% |
| ! | TTTGAAGCCACTGGACAAAT+TGG | + | chr1.1:1599754-1599773 | None:intergenic | 40.0% |
| AACGGCAATGCAAGTGTATG+TGG | - | chr1.1:1600523-1600542 | MS.gene27261:intron | 45.0% | |
| ACACCACATTTGGCTAGTGA+AGG | + | chr1.1:1600412-1600431 | None:intergenic | 45.0% | |
| ACATACACTTGCATTGCCGT+TGG | + | chr1.1:1600524-1600543 | None:intergenic | 45.0% | |
| AGCTCCCTCAAATGCAAGAA+TGG | + | chr1.1:1601171-1601190 | None:intergenic | 45.0% | |
| CAAGCCCATTCTTGCATTTG+AGG | - | chr1.1:1601163-1601182 | MS.gene27261:intron | 45.0% | |
| CACCACATTTGGCTAGTGAA+GGG | + | chr1.1:1600411-1600430 | None:intergenic | 45.0% | |
| CCATAGCCTGTAATAGTCGA+AGG | + | chr1.1:1602190-1602209 | None:intergenic | 45.0% | |
| CCTTCGACTATTACAGGCTA+TGG | - | chr1.1:1602187-1602206 | MS.gene27261:intron | 45.0% | |
| GATGAAAAAGCTTCCACTCG+AGG | - | chr1.1:1600545-1600564 | MS.gene27261:intron | 45.0% | |
| GCATTTGAGGGAGCTTCTAA+AGG | - | chr1.1:1601176-1601195 | MS.gene27261:intron | 45.0% | |
| GCTCCCTCAAATGCAAGAAT+GGG | + | chr1.1:1601170-1601189 | None:intergenic | 45.0% | |
| TCCAGTTTAGATGATCCCTC+AGG | - | chr1.1:1600747-1600766 | MS.gene27261:intron | 45.0% | |
| TGAAAAAGCTTCCACTCGAG+GGG | - | chr1.1:1600547-1600566 | MS.gene27261:intron | 45.0% | |
| TGCAGCTGGTAAGTACATTC+TGG | - | chr1.1:1602219-1602238 | MS.gene27261:intron | 45.0% | |
| TTCCGACAATAGTGCTCAAG+CGG | - | chr1.1:1600479-1600498 | MS.gene27261:intron | 45.0% | |
| !!! | GGTGTGCTTGATGCCATTTT+TGG | + | chr1.1:1602300-1602319 | None:intergenic | 45.0% |
| !! | AATAACTTAATTATAATATA+AGG | - | chr1.1:1601775-1601794 | MS.gene27261:intron | 5.0% |
| !! | ATAACTTAATTATAATATAA+GGG | - | chr1.1:1601776-1601795 | MS.gene27261:intron | 5.0% |
| !!! | TATTTTAAAAATATTCTTTA+TGG | - | chr1.1:1601014-1601033 | MS.gene27261:intron | 5.0% |
| AAAAAGCTTCCACTCGAGGG+GGG | - | chr1.1:1600549-1600568 | MS.gene27261:intron | 50.0% | |
| ACACCACCAGCATCAAAAGC+AGG | - | chr1.1:1602315-1602334 | MS.gene27261:CDS | 50.0% | |
| AGCATTGTGGGACTGATAGC+TGG | - | chr1.1:1600009-1600028 | MS.gene27261:intron | 50.0% | |
| CTCCCTTCACTAGCCAAATG+TGG | - | chr1.1:1600406-1600425 | MS.gene27261:intron | 50.0% | |
| GAAAAAGCTTCCACTCGAGG+GGG | - | chr1.1:1600548-1600567 | MS.gene27261:intron | 50.0% | |
| GCCTGAGGGATCATCTAAAC+TGG | + | chr1.1:1600751-1600770 | None:intergenic | 50.0% | |
| GCTCCATTGAACACGTCCAA+CGG | - | chr1.1:1600505-1600524 | MS.gene27261:intron | 50.0% | |
| TAACAGCTTAGGGAGCCTGA+GGG | + | chr1.1:1600765-1600784 | None:intergenic | 50.0% | |
| TATGGGATTGGGTTTGCAGC+TGG | - | chr1.1:1602205-1602224 | MS.gene27261:intron | 50.0% | |
| TGATCAGTGTGGCTCAGAGA+TGG | - | chr1.1:1601113-1601132 | MS.gene27261:intron | 50.0% | |
| TTGCCGTTGGACGTGTTCAA+TGG | + | chr1.1:1600511-1600530 | None:intergenic | 50.0% | |
| ! | AGGGAGCTTCTAAAGGAGCT+TGG | - | chr1.1:1601183-1601202 | MS.gene27261:intron | 50.0% |
| !! | AGAGATGGTGGGAGCAGTAT+GGG | - | chr1.1:1601128-1601147 | MS.gene27261:intron | 50.0% |
| !! | AGCTGTCCTGCTTTTGATGC+TGG | + | chr1.1:1602324-1602343 | None:intergenic | 50.0% |
| !! | TGTCCTGCTTTTGATGCTGG+TGG | + | chr1.1:1602321-1602340 | None:intergenic | 50.0% |
| CAGTGTGGCTCAGAGATGGT+GGG | - | chr1.1:1601117-1601136 | MS.gene27261:intron | 55.0% | |
| CGCCGCTTGAGCACTATTGT+CGG | + | chr1.1:1600484-1600503 | None:intergenic | 55.0% | |
| GGGGTGCATAGTCGGATGAA+TGG | - | chr1.1:1600568-1600587 | MS.gene27261:intron | 55.0% | |
| GTAACAGCTTAGGGAGCCTG+AGG | + | chr1.1:1600766-1600785 | None:intergenic | 55.0% | |
| TCAGTGTGGCTCAGAGATGG+TGG | - | chr1.1:1601116-1601135 | MS.gene27261:intron | 55.0% | |
| !! | CAGAGATGGTGGGAGCAGTA+TGG | - | chr1.1:1601127-1601146 | MS.gene27261:intron | 55.0% |
| ! | ACTCGAGGGGGGTGCATAGT+CGG | - | chr1.1:1600560-1600579 | MS.gene27261:intron | 60.0% |
| GACTATGCACCCCCCTCGAG+TGG | + | chr1.1:1600561-1600580 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 1599571 | 1602526 | 1599571 | ID=MS.gene27261 |
| chr1.1 | mRNA | 1599571 | 1602526 | 1599571 | ID=MS.gene27261.t1;Parent=MS.gene27261 |
| chr1.1 | exon | 1602308 | 1602526 | 1602308 | ID=MS.gene27261.t1.exon1;Parent=MS.gene27261.t1 |
| chr1.1 | CDS | 1602308 | 1602526 | 1602308 | ID=cds.MS.gene27261.t1;Parent=MS.gene27261.t1 |
| chr1.1 | exon | 1602050 | 1602190 | 1602050 | ID=MS.gene27261.t1.exon2;Parent=MS.gene27261.t1 |
| chr1.1 | CDS | 1602050 | 1602190 | 1602050 | ID=cds.MS.gene27261.t1;Parent=MS.gene27261.t1 |
| chr1.1 | exon | 1600858 | 1600977 | 1600858 | ID=MS.gene27261.t1.exon3;Parent=MS.gene27261.t1 |
| chr1.1 | CDS | 1600858 | 1600977 | 1600858 | ID=cds.MS.gene27261.t1;Parent=MS.gene27261.t1 |
| chr1.1 | exon | 1600023 | 1600118 | 1600023 | ID=MS.gene27261.t1.exon4;Parent=MS.gene27261.t1 |
| chr1.1 | CDS | 1600023 | 1600118 | 1600023 | ID=cds.MS.gene27261.t1;Parent=MS.gene27261.t1 |
| chr1.1 | exon | 1599871 | 1599894 | 1599871 | ID=MS.gene27261.t1.exon5;Parent=MS.gene27261.t1 |
| chr1.1 | CDS | 1599871 | 1599894 | 1599871 | ID=cds.MS.gene27261.t1;Parent=MS.gene27261.t1 |
| chr1.1 | exon | 1599571 | 1599597 | 1599571 | ID=MS.gene27261.t1.exon6;Parent=MS.gene27261.t1 |
| chr1.1 | CDS | 1599571 | 1599597 | 1599571 | ID=cds.MS.gene27261.t1;Parent=MS.gene27261.t1 |
| Gene Sequence |
| Protein sequence |
