Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26999.t1 | XP_003589322.2 | 98.1 | 160 | 3 | 0 | 1 | 160 | 1 | 160 | 5.80E-85 | 323.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26999.t1 | Q6ZRR5 | 26.6 | 143 | 104 | 1 | 9 | 150 | 9 | 151 | 4.8e-11 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26999.t1 | G7I5C1 | 98.1 | 160 | 3 | 0 | 1 | 160 | 1 | 160 | 4.2e-85 | 323.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene26999 | 0.814614 | 1.41E-51 | -1.69E-46 |
| MS.gene049426 | MS.gene26999 | 0.80243 | 5.63E-49 | -1.69E-46 |
| MS.gene049681 | MS.gene26999 | 0.814315 | 1.64E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene26999 | 0.821881 | 3.19E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene26999 | 0.824197 | 9.20E-54 | -1.69E-46 |
| MS.gene050397 | MS.gene26999 | 0.816141 | 6.44E-52 | -1.69E-46 |
| MS.gene050516 | MS.gene26999 | 0.821755 | 3.41E-53 | -1.69E-46 |
| MS.gene050971 | MS.gene26999 | 0.802994 | 4.31E-49 | -1.69E-46 |
| MS.gene051255 | MS.gene26999 | 0.810068 | 1.39E-50 | -1.69E-46 |
| MS.gene051360 | MS.gene26999 | 0.805678 | 1.19E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene26999 | 0.851414 | 9.02E-61 | -1.69E-46 |
| MS.gene052011 | MS.gene26999 | -0.810444 | 1.15E-50 | -1.69E-46 |
| MS.gene052207 | MS.gene26999 | 0.800256 | 1.57E-48 | -1.69E-46 |
| MS.gene052253 | MS.gene26999 | 0.826076 | 3.31E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene26999 | 0.803567 | 3.28E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene26999 | 0.809169 | 2.16E-50 | -1.69E-46 |
| MS.gene053758 | MS.gene26999 | 0.806891 | 6.60E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene26999 | 0.821571 | 3.76E-53 | -1.69E-46 |
| MS.gene054010 | MS.gene26999 | 0.856319 | 3.49E-62 | -1.69E-46 |
| MS.gene054011 | MS.gene26999 | 0.85983 | 3.15E-63 | -1.69E-46 |
| MS.gene054012 | MS.gene26999 | 0.854871 | 9.22E-62 | -1.69E-46 |
| MS.gene054013 | MS.gene26999 | 0.849725 | 2.69E-60 | -1.69E-46 |
| MS.gene054183 | MS.gene26999 | 0.824045 | 9.98E-54 | -1.69E-46 |
| MS.gene054556 | MS.gene26999 | 0.817687 | 2.90E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene26999 | 0.8003 | 1.54E-48 | -1.69E-46 |
| MS.gene055277 | MS.gene26999 | 0.835724 | 1.42E-56 | -1.69E-46 |
| MS.gene055390 | MS.gene26999 | 0.811954 | 5.41E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene26999 | 0.808633 | 2.81E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene26999 | 0.847454 | 1.14E-59 | -1.69E-46 |
| MS.gene055666 | MS.gene26999 | 0.8072 | 5.68E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene26999 | 0.829779 | 4.25E-55 | -1.69E-46 |
| MS.gene056410 | MS.gene26999 | 0.806567 | 7.73E-50 | -1.69E-46 |
| MS.gene05663 | MS.gene26999 | 0.800207 | 1.61E-48 | -1.69E-46 |
| MS.gene056902 | MS.gene26999 | 0.8407 | 7.43E-58 | -1.69E-46 |
| MS.gene056931 | MS.gene26999 | 0.818303 | 2.10E-52 | -1.69E-46 |
| MS.gene056933 | MS.gene26999 | 0.817143 | 3.84E-52 | -1.69E-46 |
| MS.gene056935 | MS.gene26999 | 0.813526 | 2.45E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene26999 | 0.851654 | 7.71E-61 | -1.69E-46 |
| MS.gene057476 | MS.gene26999 | 0.802578 | 5.25E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene26999 | 0.801863 | 7.37E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene26999 | 0.805299 | 1.43E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene26999 | 0.813739 | 2.20E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene26999 | 0.840951 | 6.38E-58 | -1.69E-46 |
| MS.gene05842 | MS.gene26999 | 0.809769 | 1.61E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene26999 | 0.821287 | 4.37E-53 | -1.69E-46 |
| MS.gene05886 | MS.gene26999 | 0.803167 | 3.97E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene26999 | 0.805832 | 1.10E-49 | -1.69E-46 |
| MS.gene058995 | MS.gene26999 | 0.816472 | 5.43E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene26999 | 0.865595 | 5.27E-65 | -1.69E-46 |
| MS.gene059294 | MS.gene26999 | 0.839102 | 1.94E-57 | -1.69E-46 |
| MS.gene059420 | MS.gene26999 | 0.832141 | 1.12E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene26999 | 0.81271 | 3.70E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene26999 | 0.802505 | 5.43E-49 | -1.69E-46 |
| MS.gene060559 | MS.gene26999 | 0.827319 | 1.67E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene26999 | 0.819379 | 1.20E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26999 | MS.gene27261 | PPI |
| MS.gene26999 | MS.gene90716 | PPI |
| MS.gene26999 | MS.gene24238 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26999.t1 | MTR_1g022950 | 98.125 | 160 | 3 | 0 | 1 | 160 | 1 | 160 | 5.56e-116 | 331 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26999.t1 | AT1G35180 | 60.116 | 173 | 67 | 1 | 2 | 172 | 3 | 175 | 6.90e-75 | 226 |
| MS.gene26999.t1 | AT1G35170 | 65.517 | 145 | 50 | 0 | 16 | 160 | 19 | 163 | 2.29e-70 | 213 |
| MS.gene26999.t1 | AT1G35170 | 65.517 | 145 | 50 | 0 | 16 | 160 | 19 | 163 | 2.29e-70 | 213 |
| MS.gene26999.t1 | AT1G35170 | 65.517 | 145 | 50 | 0 | 16 | 160 | 19 | 163 | 5.74e-70 | 214 |
| MS.gene26999.t1 | AT1G35170 | 65.517 | 145 | 50 | 0 | 16 | 160 | 19 | 163 | 1.88e-69 | 212 |
| MS.gene26999.t1 | AT1G45010 | 63.636 | 154 | 56 | 0 | 7 | 160 | 10 | 163 | 5.88e-67 | 204 |
| MS.gene26999.t1 | AT1G45010 | 60.843 | 166 | 65 | 0 | 7 | 172 | 10 | 175 | 7.42e-67 | 206 |
| MS.gene26999.t1 | AT1G45010 | 59.538 | 173 | 68 | 1 | 2 | 172 | 3 | 175 | 1.44e-66 | 205 |
| MS.gene26999.t1 | AT1G45010 | 61.616 | 99 | 38 | 0 | 74 | 172 | 1 | 99 | 1.09e-39 | 134 |
Find 44 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATCTGCAGTCAAATTA+AGG | 0.189859 | 1.3:+2333924 | None:intergenic |
| TTTGAAGCCACTGGACAAAT+TGG | 0.271253 | 1.3:+2335405 | None:intergenic |
| GAGAAATCAAATGAACGTTT+TGG | 0.301030 | 1.3:+2335504 | None:intergenic |
| CAGAGATGGTTGGAGCAGTA+TGG | 0.313786 | 1.3:-2334018 | MS.gene26999:CDS |
| TTTGGATGATGATGATTTCT+TGG | 0.316280 | 1.3:+2332866 | None:intergenic |
| GTCCCACAATGCTTACTAAA+TGG | 0.321372 | 1.3:+2335157 | None:intergenic |
| CTTGATGAGAAATGGGTTCT+TGG | 0.325198 | 1.3:+2333093 | None:intergenic |
| TATTATACCTTGATGAGAAA+TGG | 0.337195 | 1.3:+2333085 | None:intergenic |
| ATTTGATCAGATGGAAGTTC+TGG | 0.337359 | 1.3:-2335259 | MS.gene26999:intron |
| TGCAGCTGGTAAGTACATTC+TGG | 0.354832 | 1.3:-2332926 | MS.gene26999:CDS |
| CTACTCTATCTGTTCAAGAT+TGG | 0.361261 | 1.3:-2335434 | MS.gene26999:CDS |
| CTATTACAGGCTATGGGATT+GGG | 0.373800 | 1.3:-2332951 | MS.gene26999:intron |
| ACATTTGCTAGGATGATGAT+TGG | 0.391517 | 1.3:-2333145 | MS.gene26999:intron |
| TACATCTGCAGTCAAATTAA+GGG | 0.403745 | 1.3:+2333925 | None:intergenic |
| ATTATACCTTGATGAGAAAT+GGG | 0.416729 | 1.3:+2333086 | None:intergenic |
| AGCTCCCTCAAATGCAAGAA+TGG | 0.423674 | 1.3:+2333977 | None:intergenic |
| ACTATTACAGGCTATGGGAT+TGG | 0.428555 | 1.3:-2332952 | MS.gene26999:intron |
| TTCAAATTCTTCTTACAGAC+AGG | 0.438036 | 1.3:-2335388 | MS.gene26999:intron |
| CAAGCCCATTCTTGCATTTG+AGG | 0.445389 | 1.3:-2333982 | MS.gene26999:CDS |
| GCATTTGAGGGAGCTTCTAA+AGG | 0.464317 | 1.3:-2333969 | MS.gene26999:CDS |
| AAGCCCATTCTTGCATTTGA+GGG | 0.465855 | 1.3:-2333981 | MS.gene26999:CDS |
| CACCATTTAGTAAGCATTGT+GGG | 0.466117 | 1.3:-2335159 | MS.gene26999:CDS |
| TATGGGATTGGGTTTGCAGC+TGG | 0.477409 | 1.3:-2332940 | MS.gene26999:CDS |
| AGCATTGTGGGACTGATAGC+TGG | 0.478228 | 1.3:-2335147 | MS.gene26999:CDS |
| GCTCCCTCAAATGCAAGAAT+GGG | 0.481370 | 1.3:+2333978 | None:intergenic |
| CAAGAACCCATTTCTCATCA+AGG | 0.482925 | 1.3:-2333092 | MS.gene26999:intron |
| ACACCACCAACATCAAAAGC+AGG | 0.487485 | 1.3:-2332830 | MS.gene26999:CDS |
| CTTCGACTATTACAGGCTAT+GGG | 0.490448 | 1.3:-2332957 | MS.gene26999:intron |
| AGGGAGCTTCTAAAGGAGCT+TGG | 0.499104 | 1.3:-2333962 | MS.gene26999:CDS |
| AATTGTAGATACAATTCTGT+TGG | 0.499670 | 1.3:+2335482 | None:intergenic |
| TAAGAAGAATTTGAAGCCAC+TGG | 0.506715 | 1.3:+2335396 | None:intergenic |
| AGCTGGCTTATGCTATCAAA+AGG | 0.510458 | 1.3:-2335130 | MS.gene26999:intron |
| AGAGATGGTTGGAGCAGTAT+GGG | 0.533184 | 1.3:-2334017 | MS.gene26999:CDS |
| ATTCAAAAGACAATTGTGGT+TGG | 0.543048 | 1.3:-2335573 | MS.gene26999:CDS |
| GATCATAAATTAGATATGAC+AGG | 0.545515 | 1.3:+2335229 | None:intergenic |
| CAGTGTGGCTCAGAGATGGT+TGG | 0.573548 | 1.3:-2334028 | MS.gene26999:CDS |
| CTTGGAAGTTAATGTTACGT+AGG | 0.583995 | 1.3:+2333111 | None:intergenic |
| GAAATGTCCAATTTGTCCAG+TGG | 0.588096 | 1.3:-2335412 | MS.gene26999:CDS |
| CCACAATGCTTACTAAATGG+TGG | 0.601229 | 1.3:+2335160 | None:intergenic |
| CCACCATTTAGTAAGCATTG+TGG | 0.612304 | 1.3:-2335160 | MS.gene26999:CDS |
| AATGTTACGTAGGTGATACA+AGG | 0.616770 | 1.3:+2333121 | None:intergenic |
| ATATATTCAAAAGACAATTG+TGG | 0.625016 | 1.3:-2335577 | MS.gene26999:CDS |
| ACATCTGCAGTCAAATTAAG+GGG | 0.627723 | 1.3:+2333926 | None:intergenic |
| TGATCAGTGTGGCTCAGAGA+TGG | 0.653705 | 1.3:-2334032 | MS.gene26999:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTTTTAAAAATTT+TGG | + | chr1.3:2335080-2335099 | None:intergenic | 0.0% |
| !! | GTACAAAATAAATAAATATT+TGG | + | chr1.3:2334531-2334550 | None:intergenic | 10.0% |
| !!! | GTTTAAAATATAAAAACTAA+GGG | + | chr1.3:2335366-2335385 | None:intergenic | 10.0% |
| !!! | TGTTTAAAATATAAAAACTA+AGG | + | chr1.3:2335367-2335386 | None:intergenic | 10.0% |
| !! | ATATATCATTTGTACTTAAT+TGG | - | chr1.3:2333102-2333121 | MS.gene26999:CDS | 15.0% |
| !! | ATTTGATGAAAAATTCAATT+GGG | - | chr1.3:2333214-2333233 | MS.gene26999:intron | 15.0% |
| !! | TATTTGATGAAAAATTCAAT+TGG | - | chr1.3:2333213-2333232 | MS.gene26999:intron | 15.0% |
| !! | TTTAATAATATGATACTCAT+TGG | - | chr1.3:2335401-2335420 | MS.gene26999:CDS | 15.0% |
| !!! | AATCTAATATTTTAAGGTTT+TGG | - | chr1.3:2333930-2333949 | MS.gene26999:CDS | 15.0% |
| !!! | CTCAAAAATCTAATATTTTA+AGG | - | chr1.3:2333924-2333943 | MS.gene26999:intron | 15.0% |
| !! | AAACATTTAATCTATCTACA+TGG | + | chr1.3:2334183-2334202 | None:intergenic | 20.0% |
| !! | AAACTCTAAATTATTCTAAC+AGG | + | chr1.3:2333471-2333490 | None:intergenic | 20.0% |
| !! | AATGGAAAAACAAGATATTT+AGG | + | chr1.3:2334720-2334739 | None:intergenic | 20.0% |
| !! | ATATATTCAAAAGACAATTG+TGG | - | chr1.3:2332830-2332849 | MS.gene26999:CDS | 20.0% |
| !! | ATGTAGATAGATTAAATGTT+TGG | - | chr1.3:2334182-2334201 | MS.gene26999:intron | 20.0% |
| !! | ATTGAAAATAGAACTAGATT+TGG | + | chr1.3:2334688-2334707 | None:intergenic | 20.0% |
| !! | TCAAGAAATTTAATGCATTA+AGG | - | chr1.3:2333559-2333578 | MS.gene26999:intron | 20.0% |
| !! | TGTTAATTAATATGAGGATT+TGG | - | chr1.3:2334320-2334339 | MS.gene26999:intron | 20.0% |
| !! | TTATAAATCATGACACTAAT+TGG | + | chr1.3:2335132-2335151 | None:intergenic | 20.0% |
| !!! | AATAGTTTGAAACAATATGA+TGG | - | chr1.3:2334957-2334976 | MS.gene26999:intron | 20.0% |
| !!! | AATTCTATCCAACTTTTTAT+TGG | + | chr1.3:2334040-2334059 | None:intergenic | 20.0% |
| !!! | ATTCAATGTTTTGAATTGAT+AGG | + | chr1.3:2334147-2334166 | None:intergenic | 20.0% |
| !!! | ATTCTATCCAACTTTTTATT+GGG | + | chr1.3:2334039-2334058 | None:intergenic | 20.0% |
| !!! | CTTTTGTGTTAATTAATATG+AGG | - | chr1.3:2334314-2334333 | MS.gene26999:intron | 20.0% |
| !!! | TTTGGTTGATTTAAAAATAG+AGG | + | chr1.3:2334670-2334689 | None:intergenic | 20.0% |
| ! | AAACTCAATGGTTAATAAAG+GGG | - | chr1.3:2333681-2333700 | MS.gene26999:intron | 25.0% |
| ! | AAATCATCATCATCCAAAAA+TGG | - | chr1.3:2335546-2335565 | MS.gene26999:CDS | 25.0% |
| ! | AATTGTAGATACAATTCTGT+TGG | + | chr1.3:2332928-2332947 | None:intergenic | 25.0% |
| ! | ATGTAAGTAAACCACTATTA+AGG | - | chr1.3:2334500-2334519 | MS.gene26999:intron | 25.0% |
| ! | ATTATACCTTGATGAGAAAT+GGG | + | chr1.3:2335324-2335343 | None:intergenic | 25.0% |
| ! | CAAACTCAATGGTTAATAAA+GGG | - | chr1.3:2333680-2333699 | MS.gene26999:intron | 25.0% |
| ! | CTTCAATATTTACATTTGCT+AGG | - | chr1.3:2335251-2335270 | MS.gene26999:CDS | 25.0% |
| ! | GATCATAAATTAGATATGAC+AGG | + | chr1.3:2333181-2333200 | None:intergenic | 25.0% |
| ! | TAAGAAAGTGATAGAGTTTA+CGG | - | chr1.3:2334578-2334597 | MS.gene26999:intron | 25.0% |
| ! | TATTATACCTTGATGAGAAA+TGG | + | chr1.3:2335325-2335344 | None:intergenic | 25.0% |
| ! | TCAAACTCAATGGTTAATAA+AGG | - | chr1.3:2333679-2333698 | MS.gene26999:intron | 25.0% |
| ! | TTAGGTATATATCTTATTCC+AGG | - | chr1.3:2334602-2334621 | MS.gene26999:intron | 25.0% |
| !! | ATGTTTGAAATTTGATCAGA+TGG | - | chr1.3:2333139-2333158 | MS.gene26999:intron | 25.0% |
| !!! | AGGTTTTGGATAAAAAAATG+TGG | - | chr1.3:2333944-2333963 | MS.gene26999:CDS | 25.0% |
| !!! | CAAGTTTGCTAGTAAAATTT+TGG | - | chr1.3:2334209-2334228 | MS.gene26999:intron | 25.0% |
| !!! | TCATCTGTTAGCTTATTTTA+AGG | + | chr1.3:2335206-2335225 | None:intergenic | 25.0% |
| !!! | TGAGTGTTGAAAATATGTAA+AGG | - | chr1.3:2333531-2333550 | MS.gene26999:intron | 25.0% |
| !!! | TGTTGAGCAAGTAATTTTTT+TGG | - | chr1.3:2334632-2334651 | MS.gene26999:intron | 25.0% |
| AAACAACCACATAAATGAGT+TGG | + | chr1.3:2333607-2333626 | None:intergenic | 30.0% | |
| AGATATCCAACTCATTTATG+TGG | - | chr1.3:2333598-2333617 | MS.gene26999:intron | 30.0% | |
| AGTTAGAAGAAGGAAAACTT+TGG | - | chr1.3:2334879-2334898 | MS.gene26999:intron | 30.0% | |
| ATTACACATGCAATGTTCTT+TGG | + | chr1.3:2334553-2334572 | None:intergenic | 30.0% | |
| ATTCAAAAGACAATTGTGGT+TGG | - | chr1.3:2332834-2332853 | MS.gene26999:CDS | 30.0% | |
| ATTTGGTATGTCCTTAATAG+TGG | + | chr1.3:2334514-2334533 | None:intergenic | 30.0% | |
| CATTTCTTAGCATGTAAGAA+TGG | - | chr1.3:2334854-2334873 | MS.gene26999:intron | 30.0% | |
| CTATAAACATATGATCAGTG+TGG | - | chr1.3:2334364-2334383 | MS.gene26999:intron | 30.0% | |
| TACATCTGCAGTCAAATTAA+GGG | + | chr1.3:2334485-2334504 | None:intergenic | 30.0% | |
| TGTTACACCCAATAAAAAGT+TGG | - | chr1.3:2334029-2334048 | MS.gene26999:intron | 30.0% | |
| TTACATCTGCAGTCAAATTA+AGG | + | chr1.3:2334486-2334505 | None:intergenic | 30.0% | |
| TTCAAATTCTTCTTACAGAC+AGG | - | chr1.3:2333019-2333038 | MS.gene26999:intron | 30.0% | |
| ! | CAACAACTTTTCTTGTAATG+AGG | - | chr1.3:2332871-2332890 | MS.gene26999:CDS | 30.0% |
| ! | GAGAAATCAAATGAACGTTT+TGG | + | chr1.3:2332906-2332925 | None:intergenic | 30.0% |
| ! | TTTGGATGATGATGATTTCT+TGG | + | chr1.3:2335544-2335563 | None:intergenic | 30.0% |
| !! | AATATGAGGATTTGGTGATA+AGG | - | chr1.3:2334328-2334347 | MS.gene26999:intron | 30.0% |
| !! | TAGTTGAAAGTGTTGTGAAT+TGG | - | chr1.3:2333499-2333518 | MS.gene26999:intron | 30.0% |
| !! | TGCAATTTTAGCAGTAACAT+TGG | - | chr1.3:2332950-2332969 | MS.gene26999:intron | 30.0% |
| AAGAATGGAGAGTTAGAAGA+AGG | - | chr1.3:2334869-2334888 | MS.gene26999:intron | 35.0% | |
| AATGGATGATCTTACGTTTG+AGG | - | chr1.3:2333834-2333853 | MS.gene26999:intron | 35.0% | |
| AATGTTACGTAGGTGATACA+AGG | + | chr1.3:2335289-2335308 | None:intergenic | 35.0% | |
| ACATCTGCAGTCAAATTAAG+GGG | + | chr1.3:2334484-2334503 | None:intergenic | 35.0% | |
| AGAACATTGCATGTGTAATC+TGG | - | chr1.3:2334554-2334573 | MS.gene26999:intron | 35.0% | |
| AGCTAACAGATGAGTTTGTA+TGG | - | chr1.3:2335213-2335232 | MS.gene26999:CDS | 35.0% | |
| AGTGATAGAGTTTACGGTTT+AGG | - | chr1.3:2334584-2334603 | MS.gene26999:intron | 35.0% | |
| ATGGATGATCTTACGTTTGA+GGG | - | chr1.3:2333835-2333854 | MS.gene26999:intron | 35.0% | |
| ATTGTTGTGTCAAGTGTGAT+TGG | - | chr1.3:2333862-2333881 | MS.gene26999:intron | 35.0% | |
| ATTTGATCAGATGGAAGTTC+TGG | - | chr1.3:2333148-2333167 | MS.gene26999:intron | 35.0% | |
| CGAGTACTTTAGATAGGAAA+TGG | + | chr1.3:2334738-2334757 | None:intergenic | 35.0% | |
| CTACTCTATCTGTTCAAGAT+TGG | - | chr1.3:2332973-2332992 | MS.gene26999:intron | 35.0% | |
| CTTGGAAGTTAATGTTACGT+AGG | + | chr1.3:2335299-2335318 | None:intergenic | 35.0% | |
| GAAATTCTTTCCGACAATAG+TGG | - | chr1.3:2333719-2333738 | MS.gene26999:intron | 35.0% | |
| TTATTGGGTGTAACAGCTTA+GGG | + | chr1.3:2334024-2334043 | None:intergenic | 35.0% | |
| TTTATTGGGTGTAACAGCTT+AGG | + | chr1.3:2334025-2334044 | None:intergenic | 35.0% | |
| ! | ACATTTGCTAGGATGATGAT+TGG | - | chr1.3:2335262-2335281 | MS.gene26999:intron | 35.0% |
| ! | CACCATTTAGTAAGCATTGT+GGG | - | chr1.3:2333248-2333267 | MS.gene26999:intron | 35.0% |
| ! | TAAGAAGAATTTGAAGCCAC+TGG | + | chr1.3:2333014-2333033 | None:intergenic | 35.0% |
| ! | TTCCTATCTAAAGTACTCGA+GGG | - | chr1.3:2334739-2334758 | MS.gene26999:intron | 35.0% |
| ! | TTTCCTATCTAAAGTACTCG+AGG | - | chr1.3:2334738-2334757 | MS.gene26999:intron | 35.0% |
| !! | TTGAAAGTGTTGTGAATTGG+AGG | - | chr1.3:2333502-2333521 | MS.gene26999:intron | 35.0% |
| !!! | GGTTGTTTTTGACTCAATGT+GGG | - | chr1.3:2333619-2333638 | MS.gene26999:intron | 35.0% |
| !!! | TGGTTGTTTTTGACTCAATG+TGG | - | chr1.3:2333618-2333637 | MS.gene26999:intron | 35.0% |
| !!! | TTGTGGTTGGAGTTTTTTCA+TGG | - | chr1.3:2332847-2332866 | MS.gene26999:CDS | 35.0% |
| AACCCTCGAGTACTTTAGAT+AGG | + | chr1.3:2334744-2334763 | None:intergenic | 40.0% | |
| AAGCCCATTCTTGCATTTGA+GGG | - | chr1.3:2334426-2334445 | MS.gene26999:intron | 40.0% | |
| AATGGCAATGCAAGTGTATG+TGG | - | chr1.3:2333771-2333790 | MS.gene26999:intron | 40.0% | |
| ACATACACTTGCATTGCCAT+TGG | + | chr1.3:2333772-2333791 | None:intergenic | 40.0% | |
| ACTATTACAGGCTATGGGAT+TGG | - | chr1.3:2335455-2335474 | MS.gene26999:CDS | 40.0% | |
| AGAATTTCGACACAAGGAGT+CGG | + | chr1.3:2333707-2333726 | None:intergenic | 40.0% | |
| ATGAAAAAGCTTCCACTCGA+GGG | - | chr1.3:2333794-2333813 | MS.gene26999:intron | 40.0% | |
| ATTGAGTTTGACACCACGTT+TGG | + | chr1.3:2333670-2333689 | None:intergenic | 40.0% | |
| CAAGAACCCATTTCTCATCA+AGG | - | chr1.3:2335315-2335334 | MS.gene26999:intron | 40.0% | |
| CCAATTCCTTCGACTATTAC+AGG | - | chr1.3:2335443-2335462 | MS.gene26999:CDS | 40.0% | |
| CCACAATGCTTACTAAATGG+TGG | + | chr1.3:2333250-2333269 | None:intergenic | 40.0% | |
| CCTGTAATAGTCGAAGGAAT+TGG | + | chr1.3:2335446-2335465 | None:intergenic | 40.0% | |
| CGTAAGATCATCCATTCATC+CGG | + | chr1.3:2333830-2333849 | None:intergenic | 40.0% | |
| CTATTACAGGCTATGGGATT+GGG | - | chr1.3:2335456-2335475 | MS.gene26999:CDS | 40.0% | |
| CTTCGACTATTACAGGCTAT+GGG | - | chr1.3:2335450-2335469 | MS.gene26999:CDS | 40.0% | |
| CTTGCTCAACAAAAATAGCC+TGG | + | chr1.3:2334623-2334642 | None:intergenic | 40.0% | |
| GAAATGTCCAATTTGTCCAG+TGG | - | chr1.3:2332995-2333014 | MS.gene26999:intron | 40.0% | |
| GTCCCACAATGCTTACTAAA+TGG | + | chr1.3:2333253-2333272 | None:intergenic | 40.0% | |
| GTGTTGTGAATTGGAGGAAA+AGG | - | chr1.3:2333508-2333527 | MS.gene26999:intron | 40.0% | |
| TCGGAAAGAATTTCGACACA+AGG | + | chr1.3:2333713-2333732 | None:intergenic | 40.0% | |
| TTGAGTTTGACACCACGTTT+GGG | + | chr1.3:2333669-2333688 | None:intergenic | 40.0% | |
| TTGTGTCAAGTGTGATTGGA+TGG | - | chr1.3:2333866-2333885 | MS.gene26999:intron | 40.0% | |
| ! | AAACGTGGTGTCAAACTCAA+TGG | - | chr1.3:2333669-2333688 | MS.gene26999:intron | 40.0% |
| ! | ACTCAATGTGGGTGATCTTT+TGG | - | chr1.3:2333630-2333649 | MS.gene26999:intron | 40.0% |
| ! | AGCTGGCTTATGCTATCAAA+AGG | - | chr1.3:2333277-2333296 | MS.gene26999:intron | 40.0% |
| ! | CCACCATTTAGTAAGCATTG+TGG | - | chr1.3:2333247-2333266 | MS.gene26999:intron | 40.0% |
| ! | CTTGATGAGAAATGGGTTCT+TGG | + | chr1.3:2335317-2335336 | None:intergenic | 40.0% |
| ! | TTTGAAGCCACTGGACAAAT+TGG | + | chr1.3:2333005-2333024 | None:intergenic | 40.0% |
| ACACCACCAACATCAAAAGC+AGG | - | chr1.3:2335577-2335596 | MS.gene26999:CDS | 45.0% | |
| AGAGATGGTTGGAGCAGTAT+GGG | - | chr1.3:2334390-2334409 | MS.gene26999:intron | 45.0% | |
| AGCTCCCTCAAATGCAAGAA+TGG | + | chr1.3:2334433-2334452 | None:intergenic | 45.0% | |
| CAAGCCCATTCTTGCATTTG+AGG | - | chr1.3:2334425-2334444 | MS.gene26999:intron | 45.0% | |
| CCATAGCCTGTAATAGTCGA+AGG | + | chr1.3:2335452-2335471 | None:intergenic | 45.0% | |
| CCTTCGACTATTACAGGCTA+TGG | - | chr1.3:2335449-2335468 | MS.gene26999:CDS | 45.0% | |
| GATGAAAAAGCTTCCACTCG+AGG | - | chr1.3:2333793-2333812 | MS.gene26999:intron | 45.0% | |
| GCATTTGAGGGAGCTTCTAA+AGG | - | chr1.3:2334438-2334457 | MS.gene26999:intron | 45.0% | |
| GCTCCCTCAAATGCAAGAAT+GGG | + | chr1.3:2334432-2334451 | None:intergenic | 45.0% | |
| TCCAGTTTAGATGATCCCTC+AGG | - | chr1.3:2333996-2334015 | MS.gene26999:CDS | 45.0% | |
| TGAAAAAGCTTCCACTCGAG+GGG | - | chr1.3:2333795-2333814 | MS.gene26999:intron | 45.0% | |
| TGCAGCTGGTAAGTACATTC+TGG | - | chr1.3:2335481-2335500 | MS.gene26999:CDS | 45.0% | |
| TTCCGACAATAGTGGTCAAG+CGG | - | chr1.3:2333727-2333746 | MS.gene26999:intron | 45.0% | |
| !! | AGCTGTCCTGCTTTTGATGT+TGG | + | chr1.3:2335586-2335605 | None:intergenic | 45.0% |
| !! | TGTCCTGCTTTTGATGTTGG+TGG | + | chr1.3:2335583-2335602 | None:intergenic | 45.0% |
| !!! | GGTGTGCTTGATGCCATTTT+TGG | + | chr1.3:2335562-2335581 | None:intergenic | 45.0% |
| !! | AATAACTTAATTATAATATA+AGG | - | chr1.3:2335037-2335056 | MS.gene26999:intron | 5.0% |
| !! | ATAACTTAATTATAATATAA+GGG | - | chr1.3:2335038-2335057 | MS.gene26999:intron | 5.0% |
| !! | TTAAAATAAAATATTCAAAT+TGG | + | chr1.3:2334264-2334283 | None:intergenic | 5.0% |
| !!! | TATTTTAAAAATATTCTTTA+TGG | - | chr1.3:2334276-2334295 | MS.gene26999:intron | 5.0% |
| AAAAAGCTTCCACTCGAGGG+GGG | - | chr1.3:2333797-2333816 | MS.gene26999:intron | 50.0% | |
| ACACCACGTTTGGGTAGTGA+AGG | + | chr1.3:2333660-2333679 | None:intergenic | 50.0% | |
| AGCATTGTGGGACTGATAGC+TGG | - | chr1.3:2333260-2333279 | MS.gene26999:intron | 50.0% | |
| CACCACGTTTGGGTAGTGAA+GGG | + | chr1.3:2333659-2333678 | None:intergenic | 50.0% | |
| CAGAGATGGTTGGAGCAGTA+TGG | - | chr1.3:2334389-2334408 | MS.gene26999:intron | 50.0% | |
| GAAAAAGCTTCCACTCGAGG+GGG | - | chr1.3:2333796-2333815 | MS.gene26999:intron | 50.0% | |
| GCCTGAGGGATCATCTAAAC+TGG | + | chr1.3:2334000-2334019 | None:intergenic | 50.0% | |
| TAACAGCTTAGGGAGCCTGA+GGG | + | chr1.3:2334014-2334033 | None:intergenic | 50.0% | |
| TATGGGATTGGGTTTGCAGC+TGG | - | chr1.3:2335467-2335486 | MS.gene26999:CDS | 50.0% | |
| TGATCAGTGTGGCTCAGAGA+TGG | - | chr1.3:2334375-2334394 | MS.gene26999:intron | 50.0% | |
| TTGCCATTGGACGCGTTCAA+TGG | + | chr1.3:2333759-2333778 | None:intergenic | 50.0% | |
| ! | AGGGAGCTTCTAAAGGAGCT+TGG | - | chr1.3:2334445-2334464 | MS.gene26999:intron | 50.0% |
| CAGTGTGGCTCAGAGATGGT+TGG | - | chr1.3:2334379-2334398 | MS.gene26999:intron | 55.0% | |
| CGCCGCTTGACCACTATTGT+CGG | + | chr1.3:2333732-2333751 | None:intergenic | 55.0% | |
| CTCCCTTCACTACCCAAACG+TGG | - | chr1.3:2333654-2333673 | MS.gene26999:intron | 55.0% | |
| GCTCCATTGAACGCGTCCAA+TGG | - | chr1.3:2333753-2333772 | MS.gene26999:intron | 55.0% | |
| GTAACAGCTTAGGGAGCCTG+AGG | + | chr1.3:2334015-2334034 | None:intergenic | 55.0% | |
| GGGGTGCATAGCCGGATGAA+TGG | - | chr1.3:2333816-2333835 | MS.gene26999:intron | 60.0% | |
| ! | ACTCGAGGGGGGTGCATAGC+CGG | - | chr1.3:2333808-2333827 | MS.gene26999:intron | 65.0% |
| GGCTATGCACCCCCCTCGAG+TGG | + | chr1.3:2333809-2333828 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2332822 | 2335607 | 2332822 | ID=MS.gene26999 |
| chr1.3 | mRNA | 2332822 | 2335607 | 2332822 | ID=MS.gene26999.t1;Parent=MS.gene26999 |
| chr1.3 | exon | 2335389 | 2335607 | 2335389 | ID=MS.gene26999.t1.exon1;Parent=MS.gene26999.t1 |
| chr1.3 | CDS | 2335389 | 2335607 | 2335389 | ID=cds.MS.gene26999.t1;Parent=MS.gene26999.t1 |
| chr1.3 | exon | 2335131 | 2335271 | 2335131 | ID=MS.gene26999.t1.exon2;Parent=MS.gene26999.t1 |
| chr1.3 | CDS | 2335131 | 2335271 | 2335131 | ID=cds.MS.gene26999.t1;Parent=MS.gene26999.t1 |
| chr1.3 | exon | 2333928 | 2334047 | 2333928 | ID=MS.gene26999.t1.exon3;Parent=MS.gene26999.t1 |
| chr1.3 | CDS | 2333928 | 2334047 | 2333928 | ID=cds.MS.gene26999.t1;Parent=MS.gene26999.t1 |
| chr1.3 | exon | 2333093 | 2333156 | 2333093 | ID=MS.gene26999.t1.exon4;Parent=MS.gene26999.t1 |
| chr1.3 | CDS | 2333093 | 2333156 | 2333093 | ID=cds.MS.gene26999.t1;Parent=MS.gene26999.t1 |
| chr1.3 | exon | 2332822 | 2332964 | 2332822 | ID=MS.gene26999.t1.exon5;Parent=MS.gene26999.t1 |
| chr1.3 | CDS | 2332822 | 2332964 | 2332822 | ID=cds.MS.gene26999.t1;Parent=MS.gene26999.t1 |
| Gene Sequence |
| Protein sequence |
