Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90862.t1 | XP_013470433.1 | 97.7 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 1.10E-140 | 509.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90862.t1 | Q5QMM3 | 53.8 | 277 | 98 | 8 | 5 | 262 | 1 | 266 | 2.1e-66 | 253.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90862.t1 | A0A072VS22 | 97.7 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 8.2e-141 | 509.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90862.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene90862 | 0.815227 | 1.03E-51 | -1.69E-46 |
| MS.gene050303 | MS.gene90862 | 0.819345 | 1.22E-52 | -1.69E-46 |
| MS.gene050330 | MS.gene90862 | -0.801507 | 8.72E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene90862 | 0.801845 | 7.43E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene90862 | 0.80195 | 7.07E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene90862 | 0.808609 | 2.85E-50 | -1.69E-46 |
| MS.gene051633 | MS.gene90862 | 0.830357 | 3.07E-55 | -1.69E-46 |
| MS.gene052176 | MS.gene90862 | 0.859917 | 2.97E-63 | -1.69E-46 |
| MS.gene052286 | MS.gene90862 | 0.812856 | 3.43E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene90862 | 0.844822 | 5.96E-59 | -1.69E-46 |
| MS.gene052309 | MS.gene90862 | -0.830784 | 2.42E-55 | -1.69E-46 |
| MS.gene052358 | MS.gene90862 | -0.825578 | 4.34E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene90862 | 0.850444 | 1.69E-60 | -1.69E-46 |
| MS.gene053006 | MS.gene90862 | 0.821546 | 3.81E-53 | -1.69E-46 |
| MS.gene053188 | MS.gene90862 | 0.840584 | 7.96E-58 | -1.69E-46 |
| MS.gene053216 | MS.gene90862 | 0.837137 | 6.21E-57 | -1.69E-46 |
| MS.gene053294 | MS.gene90862 | 0.831067 | 2.06E-55 | -1.69E-46 |
| MS.gene054537 | MS.gene90862 | 0.830685 | 2.56E-55 | -1.69E-46 |
| MS.gene05548 | MS.gene90862 | 0.841121 | 5.76E-58 | -1.69E-46 |
| MS.gene055808 | MS.gene90862 | 0.820328 | 7.27E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene90862 | 0.810874 | 9.28E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene90862 | 0.801338 | 9.44E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene90862 | 0.837947 | 3.85E-57 | -1.69E-46 |
| MS.gene057079 | MS.gene90862 | 0.842184 | 3.02E-58 | -1.69E-46 |
| MS.gene057555 | MS.gene90862 | 0.80105 | 1.08E-48 | -1.69E-46 |
| MS.gene05795 | MS.gene90862 | 0.856679 | 2.73E-62 | -1.69E-46 |
| MS.gene058200 | MS.gene90862 | 0.822617 | 2.15E-53 | -1.69E-46 |
| MS.gene058238 | MS.gene90862 | 0.81731 | 3.52E-52 | -1.69E-46 |
| MS.gene058498 | MS.gene90862 | 0.807694 | 4.46E-50 | -1.69E-46 |
| MS.gene058635 | MS.gene90862 | 0.828999 | 6.58E-55 | -1.69E-46 |
| MS.gene059317 | MS.gene90862 | 0.849805 | 2.55E-60 | -1.69E-46 |
| MS.gene05954 | MS.gene90862 | 0.842109 | 3.16E-58 | -1.69E-46 |
| MS.gene060297 | MS.gene90862 | 0.81551 | 8.91E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene90862 | 0.808908 | 2.46E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene90862 | 0.831859 | 1.31E-55 | -1.69E-46 |
| MS.gene060619 | MS.gene90862 | 0.801672 | 8.06E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene90862 | 0.810691 | 1.02E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene90862 | -0.832493 | 9.16E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90862.t1 | MTR_1g115315 | 97.727 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 0.0 | 542 |
| MS.gene90862.t1 | MTR_1g115315 | 96.281 | 242 | 9 | 0 | 1 | 242 | 1 | 242 | 4.78e-177 | 488 |
| MS.gene90862.t1 | MTR_3g115620 | 69.375 | 160 | 44 | 4 | 14 | 168 | 8 | 167 | 2.89e-73 | 223 |
| MS.gene90862.t1 | MTR_7g023810 | 60.753 | 186 | 51 | 5 | 5 | 189 | 1 | 165 | 1.04e-66 | 205 |
| MS.gene90862.t1 | MTR_4g084550 | 36.607 | 112 | 51 | 2 | 69 | 169 | 37 | 139 | 9.52e-18 | 79.0 |
| MS.gene90862.t1 | MTR_2g015000 | 44.615 | 65 | 36 | 0 | 83 | 147 | 53 | 117 | 2.16e-15 | 75.9 |
| MS.gene90862.t1 | MTR_7g025010 | 42.857 | 77 | 40 | 1 | 72 | 144 | 30 | 106 | 2.77e-14 | 72.8 |
| MS.gene90862.t1 | MTR_4g088080 | 41.667 | 72 | 38 | 1 | 71 | 142 | 30 | 97 | 4.70e-13 | 68.2 |
| MS.gene90862.t1 | MTR_8g107210 | 39.506 | 81 | 48 | 1 | 85 | 165 | 96 | 175 | 5.99e-13 | 68.2 |
| MS.gene90862.t1 | MTR_7g060630 | 46.774 | 62 | 33 | 0 | 85 | 146 | 8 | 69 | 1.22e-12 | 65.5 |
| MS.gene90862.t1 | MTR_4g088070 | 42.857 | 63 | 36 | 0 | 82 | 144 | 26 | 88 | 2.86e-12 | 66.2 |
| MS.gene90862.t1 | MTR_4g063735 | 46.667 | 60 | 32 | 0 | 85 | 144 | 25 | 84 | 9.94e-12 | 63.9 |
| MS.gene90862.t1 | MTR_5g081990 | 43.333 | 60 | 34 | 0 | 85 | 144 | 33 | 92 | 1.43e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90862.t1 | AT4G35550 | 53.383 | 266 | 73 | 6 | 20 | 264 | 33 | 268 | 1.81e-85 | 256 |
| MS.gene90862.t1 | AT1G20700 | 52.761 | 163 | 69 | 5 | 10 | 168 | 19 | 177 | 8.27e-53 | 171 |
| MS.gene90862.t1 | AT1G20700 | 52.761 | 163 | 69 | 5 | 10 | 168 | 19 | 177 | 1.03e-52 | 171 |
| MS.gene90862.t1 | AT1G20710 | 52.857 | 140 | 61 | 4 | 23 | 158 | 13 | 151 | 3.49e-34 | 122 |
| MS.gene90862.t1 | AT1G20700 | 63.415 | 82 | 30 | 0 | 75 | 156 | 23 | 104 | 5.14e-34 | 120 |
| MS.gene90862.t1 | AT2G33880 | 44.615 | 65 | 36 | 0 | 82 | 146 | 52 | 116 | 3.42e-15 | 75.1 |
| MS.gene90862.t1 | AT5G45980 | 44.615 | 65 | 36 | 0 | 82 | 146 | 52 | 116 | 3.54e-15 | 74.3 |
| MS.gene90862.t1 | AT2G33880 | 45.312 | 64 | 35 | 0 | 83 | 146 | 53 | 116 | 3.67e-15 | 74.7 |
| MS.gene90862.t1 | AT3G18010 | 46.667 | 60 | 32 | 0 | 85 | 144 | 76 | 135 | 2.83e-13 | 69.3 |
| MS.gene90862.t1 | AT3G11260 | 48.333 | 60 | 31 | 0 | 85 | 144 | 24 | 83 | 1.30e-12 | 65.1 |
| MS.gene90862.t1 | AT5G05770 | 37.662 | 77 | 48 | 0 | 85 | 161 | 29 | 105 | 1.61e-12 | 63.5 |
| MS.gene90862.t1 | AT2G28610 | 43.548 | 62 | 35 | 0 | 85 | 146 | 8 | 69 | 4.82e-12 | 64.7 |
| MS.gene90862.t1 | AT2G01500 | 45.455 | 55 | 30 | 0 | 85 | 139 | 61 | 115 | 4.77e-11 | 62.0 |
Find 50 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATTTGTTTCAGAAATT+TGG | 0.112745 | 1.4:-87445049 | None:intergenic |
| TTGATCTAGCACGCCTATTT+TGG | 0.146776 | 1.4:-87445082 | None:intergenic |
| TTTATAATTGGTTCCAAAAT+AGG | 0.153266 | 1.4:+87445069 | MS.gene90862:CDS |
| CTGAAACAAATGTTTATAAT+TGG | 0.206106 | 1.4:+87445057 | MS.gene90862:CDS |
| AGACATGCCACTCAAATTTC+TGG | 0.262992 | 1.4:-87445339 | None:intergenic |
| CCTTTCATCAGGGGTTAGGC+TGG | 0.295215 | 1.4:+87444854 | MS.gene90862:intron |
| CGAATATACGCTCAAGAATC+TGG | 0.304326 | 1.4:-87444959 | None:intergenic |
| AATTGTAGTCCTCTGCTTGC+TGG | 0.362368 | 1.4:-87445954 | None:intergenic |
| CGTATATTCGATCAGGGAAA+TGG | 0.392284 | 1.4:+87444972 | MS.gene90862:CDS |
| GCAAGCAGAGGACTACAATT+TGG | 0.393799 | 1.4:+87445957 | MS.gene90862:CDS |
| TTTCATCAGGGGTTAGGCTG+GGG | 0.399266 | 1.4:+87444856 | MS.gene90862:intron |
| TCTTGAGCGTATATTCGATC+AGG | 0.413169 | 1.4:+87444965 | MS.gene90862:CDS |
| CTTTCATCAGGGGTTAGGCT+GGG | 0.414371 | 1.4:+87444855 | MS.gene90862:intron |
| TCAAGAATCTGGAGCTGAAC+CGG | 0.421307 | 1.4:-87444948 | None:intergenic |
| TTTCAGAAATTTGGCCATGC+TGG | 0.437267 | 1.4:-87445040 | None:intergenic |
| TGTAGGAGTCCACCTCTGTC+TGG | 0.437314 | 1.4:-87444925 | None:intergenic |
| GGTGATGACTGATGAACAAT+TGG | 0.449180 | 1.4:+87443376 | MS.gene90862:CDS |
| TCTCAACAAAATGCTGCTCT+AGG | 0.464326 | 1.4:+87445203 | MS.gene90862:CDS |
| TCTGCTCAACAAGATCTTGC+TGG | 0.471131 | 1.4:+87443470 | MS.gene90862:CDS |
| TGTTGAGAATGAAATTCCTC+TGG | 0.474708 | 1.4:-87445188 | None:intergenic |
| CTCAACAAGCTGTTCACAAA+TGG | 0.485586 | 1.4:-87443432 | None:intergenic |
| TCAGGGAATGACTATCTAGC+TGG | 0.485659 | 1.4:+87445898 | MS.gene90862:intron |
| ACAGAGGTGGACTCCTACAC+CGG | 0.495315 | 1.4:+87444929 | MS.gene90862:CDS |
| CTCAACAAAATGCTGCTCTA+GGG | 0.501777 | 1.4:+87445204 | MS.gene90862:CDS |
| TGTCGAAGCGATGTATGTTA+AGG | 0.503782 | 1.4:+87443355 | MS.gene90862:CDS |
| AGAAACAACAAGTACAGAAT+GGG | 0.518129 | 1.4:+87443330 | MS.gene90862:CDS |
| AGAGAAAATGGTGAACATGA+TGG | 0.521726 | 1.4:+87443301 | None:intergenic |
| GCAGAGGACTACAATTTGGC+AGG | 0.523975 | 1.4:+87445961 | MS.gene90862:CDS |
| TGCGACTCATTGATGACAGC+TGG | 0.529717 | 1.4:+87444888 | MS.gene90862:CDS |
| CAGAAACAACAAGTACAGAA+TGG | 0.532343 | 1.4:+87443329 | MS.gene90862:CDS |
| AACATATTCCGTGTTTCCAT+CGG | 0.539020 | 1.4:+87445298 | MS.gene90862:CDS |
| ACCGCCATCCGATGGAAACA+CGG | 0.553887 | 1.4:-87445306 | None:intergenic |
| AGAGACTGAGGTTGATTCCA+AGG | 0.556104 | 1.4:+87445151 | MS.gene90862:CDS |
| GATCTTATACCGCCATCCGA+TGG | 0.574800 | 1.4:-87445314 | None:intergenic |
| CTTGAGCGTATATTCGATCA+GGG | 0.579984 | 1.4:+87444966 | MS.gene90862:CDS |
| ATCTGGAGCTGAACCGGTGT+AGG | 0.590506 | 1.4:-87444942 | None:intergenic |
| TCCGTGTTTCCATCGGATGG+CGG | 0.595864 | 1.4:+87445305 | MS.gene90862:CDS |
| TATTCCGTGTTTCCATCGGA+TGG | 0.597599 | 1.4:+87445302 | MS.gene90862:CDS |
| GCTACTGAACTCAGCCAGCA+TGG | 0.597739 | 1.4:+87445026 | MS.gene90862:CDS |
| TCAACAAAATGCTGCTCTAG+GGG | 0.599937 | 1.4:+87445205 | MS.gene90862:CDS |
| AACTAGTAACACTGAATCAG+AGG | 0.600354 | 1.4:+87445127 | MS.gene90862:CDS |
| CATGCCACTCAAATTTCTGG+TGG | 0.605707 | 1.4:-87445336 | None:intergenic |
| AAATGGTGAACATGATGGAA+TGG | 0.621193 | 1.4:+87443306 | None:intergenic |
| AAATCACATCCAGACAGAGG+TGG | 0.644627 | 1.4:+87444916 | MS.gene90862:CDS |
| ATGAACAATTGGAAACTCTG+AGG | 0.682721 | 1.4:+87443387 | MS.gene90862:CDS |
| TGAATCAGAGGTAGAGACTG+AGG | 0.683491 | 1.4:+87445139 | MS.gene90862:CDS |
| AGATCCACCAGAAATTTGAG+TGG | 0.687166 | 1.4:+87445332 | MS.gene90862:CDS |
| GGATAAGAAGACAAAACCAG+AGG | 0.688078 | 1.4:+87445172 | MS.gene90862:CDS |
| CAATATATACCAGCAAGCAG+AGG | 0.697674 | 1.4:+87445945 | MS.gene90862:CDS |
| ACAAAATCACATCCAGACAG+AGG | 0.711170 | 1.4:+87444913 | MS.gene90862:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATATAAAAATTAAA+GGG | - | chr1.4:87443540-87443559 | None:intergenic | 0.0% |
| !! | ATTACTAAAATTAAAATTGA+AGG | - | chr1.4:87443658-87443677 | None:intergenic | 10.0% |
| !! | TTACTAAAATTAAAATTGAA+GGG | - | chr1.4:87443657-87443676 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAAAAAAATTGG+GGG | - | chr1.4:87444545-87444564 | None:intergenic | 10.0% |
| !!! | TTTTTATATTATTTTGCTTT+TGG | + | chr1.4:87443545-87443564 | MS.gene90862:intron | 10.0% |
| !! | GTGCATATATATATATATAT+AGG | - | chr1.4:87443599-87443618 | None:intergenic | 15.0% |
| !!! | ATTGAATAAACATACATTTT+TGG | + | chr1.4:87444606-87444625 | MS.gene90862:intron | 15.0% |
| !!! | GATTAAATAACAAACATTTT+TGG | + | chr1.4:87444655-87444674 | MS.gene90862:intron | 15.0% |
| !! | AAAAAGAAAAATGCAAAATG+GGG | + | chr1.4:87445103-87445122 | MS.gene90862:CDS | 20.0% |
| !! | AAAATATCAGGAAAAGAATA+TGG | - | chr1.4:87445878-87445897 | None:intergenic | 20.0% |
| !! | AAACATTTGTTTCAGAAATT+TGG | - | chr1.4:87445052-87445071 | None:intergenic | 20.0% |
| !! | AACAGATATGAATGAATAAA+TGG | - | chr1.4:87444022-87444041 | None:intergenic | 20.0% |
| !! | ACAAAGAACTACTAAATATT+TGG | - | chr1.4:87443973-87443992 | None:intergenic | 20.0% |
| !! | ACAGATATGAATGAATAAAT+GGG | - | chr1.4:87444021-87444040 | None:intergenic | 20.0% |
| !! | ACTAATTTGAAGATTTGATT+AGG | + | chr1.4:87445600-87445619 | MS.gene90862:intron | 20.0% |
| !! | ATGAATAAATGGGAATTTAT+AGG | - | chr1.4:87444011-87444030 | None:intergenic | 20.0% |
| !! | CAAAAAGAAAAATGCAAAAT+GGG | + | chr1.4:87445102-87445121 | MS.gene90862:CDS | 20.0% |
| !! | CTGAAACAAATGTTTATAAT+TGG | + | chr1.4:87445057-87445076 | MS.gene90862:CDS | 20.0% |
| !! | TAAGATCATACGAAAAATAT+AGG | - | chr1.4:87445438-87445457 | None:intergenic | 20.0% |
| !! | TCAAAAAGAAAAATGCAAAA+TGG | + | chr1.4:87445101-87445120 | MS.gene90862:CDS | 20.0% |
| !! | TCTTGATATTATATGACAAA+TGG | + | chr1.4:87445561-87445580 | MS.gene90862:intron | 20.0% |
| !!! | AAGGTACATAACTTTTTTTA+GGG | + | chr1.4:87443751-87443770 | MS.gene90862:intron | 20.0% |
| !!! | ACTGTATTTTAGTGTATATT+TGG | - | chr1.4:87443927-87443946 | None:intergenic | 20.0% |
| !!! | ATGCTAGTAAAACATTTTTT+TGG | - | chr1.4:87445790-87445809 | None:intergenic | 20.0% |
| !!! | TAAGGTACATAACTTTTTTT+AGG | + | chr1.4:87443750-87443769 | MS.gene90862:intron | 20.0% |
| !!! | TACATTTTTAGTTGCAAATA+AGG | + | chr1.4:87443732-87443751 | MS.gene90862:intron | 20.0% |
| !!! | TACTAAATATTTGGAATCTT+TGG | - | chr1.4:87443964-87443983 | None:intergenic | 20.0% |
| !!! | TGTGTTTAACATTTTAGTAA+AGG | + | chr1.4:87445735-87445754 | MS.gene90862:intron | 20.0% |
| !!! | TTTATAATTGGTTCCAAAAT+AGG | + | chr1.4:87445069-87445088 | MS.gene90862:CDS | 20.0% |
| !!! | TTTTTGTTTTTGCATTTAAG+AGG | + | chr1.4:87444570-87444589 | MS.gene90862:intron | 20.0% |
| ! | AAAAGAAAAATGCAAAATGG+GGG | + | chr1.4:87445104-87445123 | MS.gene90862:CDS | 25.0% |
| ! | ACAGAAAACAAAACCATTTA+GGG | + | chr1.4:87444102-87444121 | MS.gene90862:intron | 25.0% |
| ! | ATCTTCAAATTAGTATTCCA+AGG | - | chr1.4:87445594-87445613 | None:intergenic | 25.0% |
| ! | ATTAAAGGGAATTTATGATC+AGG | - | chr1.4:87443526-87443545 | None:intergenic | 25.0% |
| ! | GAAAGAATCTAGTTGAAATT+CGG | + | chr1.4:87445480-87445499 | MS.gene90862:intron | 25.0% |
| ! | GTGTAAAGTTAAATGTTAAG+TGG | + | chr1.4:87444078-87444097 | MS.gene90862:intron | 25.0% |
| ! | GTTAACTTAGTTTAAACTTG+AGG | + | chr1.4:87444446-87444465 | MS.gene90862:intron | 25.0% |
| ! | TAAACTAAGTTAACATCTTG+TGG | - | chr1.4:87444440-87444459 | None:intergenic | 25.0% |
| ! | TATTAATTACAGTGACAATG+TGG | - | chr1.4:87444509-87444528 | None:intergenic | 25.0% |
| ! | TGGTATCATAGTAAATTTAC+CGG | + | chr1.4:87443821-87443840 | MS.gene90862:intron | 25.0% |
| ! | TTAAAGGGAATTTATGATCA+GGG | - | chr1.4:87443525-87443544 | None:intergenic | 25.0% |
| ! | TTACATAGAAAAATCAAACC+TGG | + | chr1.4:87444297-87444316 | MS.gene90862:intron | 25.0% |
| ! | TTAGTGTATATTTGGTATCA+CGG | - | chr1.4:87443919-87443938 | None:intergenic | 25.0% |
| ! | TTTCAACTAGATTCTTTCTA+AGG | - | chr1.4:87445478-87445497 | None:intergenic | 25.0% |
| !! | AATTTGTATCTTTTGGCAAT+TGG | + | chr1.4:87444763-87444782 | MS.gene90862:intron | 25.0% |
| !! | ACAAATTTAGGGGTTTATTT+TGG | + | chr1.4:87445535-87445554 | MS.gene90862:intron | 25.0% |
| !! | TCTTTTCCTGATATTTTTCA+GGG | + | chr1.4:87445881-87445900 | MS.gene90862:intron | 25.0% |
| !! | TTCTTTTCCTGATATTTTTC+AGG | + | chr1.4:87445880-87445899 | MS.gene90862:intron | 25.0% |
| !!! | AGGTTTGATTTTTCTATGTA+AGG | - | chr1.4:87444298-87444317 | None:intergenic | 25.0% |
| !!! | ATTGTCATTTTCTACAAATC+AGG | - | chr1.4:87444240-87444259 | None:intergenic | 25.0% |
| !!! | CATTTTTGGATAAACGATTA+TGG | + | chr1.4:87444620-87444639 | MS.gene90862:intron | 25.0% |
| !!! | GGTTTGATTTTTCTATGTAA+GGG | - | chr1.4:87444297-87444316 | None:intergenic | 25.0% |
| !!! | GTTATTTTTTCCTTTCATCA+GGG | + | chr1.4:87444844-87444863 | MS.gene90862:intron | 25.0% |
| !!! | TGTTATTTTTTCCTTTCATC+AGG | + | chr1.4:87444843-87444862 | MS.gene90862:intron | 25.0% |
| !!! | TTATTTTTTCCTTTCATCAG+GGG | + | chr1.4:87444845-87444864 | MS.gene90862:intron | 25.0% |
| !!! | TTGGATTGCTTTTCAAAATT+GGG | + | chr1.4:87443564-87443583 | MS.gene90862:intron | 25.0% |
| !!! | TTTGGATTGCTTTTCAAAAT+TGG | + | chr1.4:87443563-87443582 | MS.gene90862:intron | 25.0% |
| AAAAAAAAAATTGGGGGACA+AGG | - | chr1.4:87444539-87444558 | None:intergenic | 30.0% | |
| AAAACAAAACCATTTAGGGA+AGG | + | chr1.4:87444106-87444125 | MS.gene90862:intron | 30.0% | |
| AAACAAAACCATTTAGGGAA+GGG | + | chr1.4:87444107-87444126 | MS.gene90862:intron | 30.0% | |
| AGAAACAACAAGTACAGAAT+GGG | + | chr1.4:87443330-87443349 | MS.gene90862:CDS | 30.0% | |
| AGCATAACTATAAGTACATG+AGG | + | chr1.4:87444363-87444382 | MS.gene90862:intron | 30.0% | |
| CACAGAAAACAAAACCATTT+AGG | + | chr1.4:87444101-87444120 | MS.gene90862:intron | 30.0% | |
| TACAAGATAAAAAAGCAACC+AGG | - | chr1.4:87444318-87444337 | None:intergenic | 30.0% | |
| TCCAAGCAAAGAAAAAATCA+AGG | + | chr1.4:87444998-87445017 | MS.gene90862:CDS | 30.0% | |
| TGATTATCACTAGAACATGA+TGG | - | chr1.4:87444192-87444211 | None:intergenic | 30.0% | |
| TTGTTGTAGATGTGTATGTT+TGG | + | chr1.4:87443801-87443820 | MS.gene90862:intron | 30.0% | |
| ! | ACCAAGAAGTGTACAAATTT+AGG | + | chr1.4:87445523-87445542 | MS.gene90862:intron | 30.0% |
| ! | CAAGAAGTGTACAAATTTAG+GGG | + | chr1.4:87445525-87445544 | MS.gene90862:intron | 30.0% |
| ! | CCAAGAAGTGTACAAATTTA+GGG | + | chr1.4:87445524-87445543 | MS.gene90862:intron | 30.0% |
| !!! | AATTCCTGCCTTTTTTTTTG+TGG | - | chr1.4:87444747-87444766 | None:intergenic | 30.0% |
| !!! | ATTCCTGCCTTTTTTTTTGT+GGG | - | chr1.4:87444746-87444765 | None:intergenic | 30.0% |
| !!! | TCCTTGATTTTTTCTTTGCT+TGG | - | chr1.4:87445002-87445021 | None:intergenic | 30.0% |
| AACATATTCCGTGTTTCCAT+CGG | + | chr1.4:87445298-87445317 | MS.gene90862:CDS | 35.0% | |
| AACTAGTAACACTGAATCAG+AGG | + | chr1.4:87445127-87445146 | MS.gene90862:CDS | 35.0% | |
| ACAAAACCACCTTCATCTTT+GGG | + | chr1.4:87443617-87443636 | MS.gene90862:intron | 35.0% | |
| ATATCTGTTCTTGTGTCAGT+TGG | + | chr1.4:87444033-87444052 | MS.gene90862:intron | 35.0% | |
| ATGAACAATTGGAAACTCTG+AGG | + | chr1.4:87443387-87443406 | MS.gene90862:CDS | 35.0% | |
| CAGAAACAACAAGTACAGAA+TGG | + | chr1.4:87443329-87443348 | MS.gene90862:CDS | 35.0% | |
| CCCTAAATTTGTACACTTCT+TGG | - | chr1.4:87445527-87445546 | None:intergenic | 35.0% | |
| GTCATTCCCTGAAAAATATC+AGG | - | chr1.4:87445890-87445909 | None:intergenic | 35.0% | |
| TGACAAATGGACATTAACCT+TGG | + | chr1.4:87445574-87445593 | MS.gene90862:intron | 35.0% | |
| TGACTATCTAGCTGGAAAAA+TGG | + | chr1.4:87445906-87445925 | MS.gene90862:CDS | 35.0% | |
| TGTTGAGAATGAAATTCCTC+TGG | - | chr1.4:87445191-87445210 | None:intergenic | 35.0% | |
| TTAAACTTGAGGTTCCTCAA+GGG | + | chr1.4:87444457-87444476 | MS.gene90862:intron | 35.0% | |
| TTTAAACTTGAGGTTCCTCA+AGG | + | chr1.4:87444456-87444475 | MS.gene90862:intron | 35.0% | |
| ! | AAAGCATTCCCTATTACCTA+AGG | + | chr1.4:87444211-87444230 | MS.gene90862:intron | 35.0% |
| ! | ACTTGACAAGTTGAAAGCTT+TGG | - | chr1.4:87444401-87444420 | None:intergenic | 35.0% |
| ! | AGCATTTCTTTAGAGAATGC+TGG | - | chr1.4:87444820-87444839 | None:intergenic | 35.0% |
| ! | AGGCAGGAATTTGTATCTTT+TGG | + | chr1.4:87444756-87444775 | MS.gene90862:intron | 35.0% |
| ! | TTTGAGTCATCGTGATTTTG+AGG | - | chr1.4:87443882-87443901 | None:intergenic | 35.0% |
| !! | CTGGAAAAATGGAAGTATCT+GGG | + | chr1.4:87445917-87445936 | MS.gene90862:CDS | 35.0% |
| !! | GCAATTCAGAGCATTTTTCT+TGG | - | chr1.4:87445253-87445272 | None:intergenic | 35.0% |
| !! | TCAAGAGTACTTCTGATTCT+AGG | - | chr1.4:87444685-87444704 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTCTTCTTATCCT+TGG | - | chr1.4:87445171-87445190 | None:intergenic | 35.0% |
| !!! | TTCCTGCCTTTTTTTTTGTG+GGG | - | chr1.4:87444745-87444764 | None:intergenic | 35.0% |
| AAATTGGTACAAACACCAGC+AGG | + | chr1.4:87444131-87444150 | MS.gene90862:intron | 40.0% | |
| AAGTCAAAGCCCAAAGATGA+AGG | - | chr1.4:87443629-87443648 | None:intergenic | 40.0% | |
| ACAAAATCACATCCAGACAG+AGG | + | chr1.4:87444913-87444932 | MS.gene90862:CDS | 40.0% | |
| AGACATGCCACTCAAATTTC+TGG | - | chr1.4:87445342-87445361 | None:intergenic | 40.0% | |
| AGATCCACCAGAAATTTGAG+TGG | + | chr1.4:87445332-87445351 | MS.gene90862:CDS | 40.0% | |
| ATCAGGATGCCTTAGGTAAT+AGG | - | chr1.4:87444223-87444242 | None:intergenic | 40.0% | |
| CAATATATACCAGCAAGCAG+AGG | + | chr1.4:87445945-87445964 | MS.gene90862:CDS | 40.0% | |
| CACAAAACCACCTTCATCTT+TGG | + | chr1.4:87443616-87443635 | MS.gene90862:intron | 40.0% | |
| CACACATTCATTCCCTCTTT+AGG | - | chr1.4:87444164-87444183 | None:intergenic | 40.0% | |
| CCAATTTACCCTTCCCTAAA+TGG | - | chr1.4:87444118-87444137 | None:intergenic | 40.0% | |
| CCATTTAGGGAAGGGTAAAT+TGG | + | chr1.4:87444115-87444134 | MS.gene90862:intron | 40.0% | |
| CGAATATACGCTCAAGAATC+TGG | - | chr1.4:87444962-87444981 | None:intergenic | 40.0% | |
| CGTATATTCGATCAGGGAAA+TGG | + | chr1.4:87444972-87444991 | MS.gene90862:CDS | 40.0% | |
| CTAAAGAGGGAATGAATGTG+TGG | + | chr1.4:87444162-87444181 | MS.gene90862:intron | 40.0% | |
| CTCAACAAAATGCTGCTCTA+GGG | + | chr1.4:87445204-87445223 | MS.gene90862:CDS | 40.0% | |
| CTCAACAAGCTGTTCACAAA+TGG | - | chr1.4:87443435-87443454 | None:intergenic | 40.0% | |
| CTTACCCCCCACAAAAAAAA+AGG | + | chr1.4:87444736-87444755 | MS.gene90862:intron | 40.0% | |
| CTTGAGCGTATATTCGATCA+GGG | + | chr1.4:87444966-87444985 | MS.gene90862:CDS | 40.0% | |
| GCATCTCTACAAAATCACCA+CGG | - | chr1.4:87443852-87443871 | None:intergenic | 40.0% | |
| GGATAAGAAGACAAAACCAG+AGG | + | chr1.4:87445172-87445191 | MS.gene90862:CDS | 40.0% | |
| GGTGATGACTGATGAACAAT+TGG | + | chr1.4:87443376-87443395 | MS.gene90862:CDS | 40.0% | |
| TAAATTTACCGGTATCACCG+TGG | + | chr1.4:87443832-87443851 | MS.gene90862:intron | 40.0% | |
| TCAACAAAATGCTGCTCTAG+GGG | + | chr1.4:87445205-87445224 | MS.gene90862:CDS | 40.0% | |
| TCAGGATGCCTTAGGTAATA+GGG | - | chr1.4:87444222-87444241 | None:intergenic | 40.0% | |
| TCTACAAATCAGGATGCCTT+AGG | - | chr1.4:87444230-87444249 | None:intergenic | 40.0% | |
| TCTCAACAAAATGCTGCTCT+AGG | + | chr1.4:87445203-87445222 | MS.gene90862:CDS | 40.0% | |
| TCTTGAGCGTATATTCGATC+AGG | + | chr1.4:87444965-87444984 | MS.gene90862:CDS | 40.0% | |
| TGACAATGTGGTCATTTCGA+GGG | - | chr1.4:87444497-87444516 | None:intergenic | 40.0% | |
| TGGAATCTTTGGCGAAATGA+AGG | - | chr1.4:87443953-87443972 | None:intergenic | 40.0% | |
| TGGGGGGTAAGAGAAATATA+AGG | - | chr1.4:87444727-87444746 | None:intergenic | 40.0% | |
| TGTCGAAGCGATGTATGTTA+AGG | + | chr1.4:87443355-87443374 | MS.gene90862:CDS | 40.0% | |
| TTTCAGAAATTTGGCCATGC+TGG | - | chr1.4:87445043-87445062 | None:intergenic | 40.0% | |
| ! | CTCTCACCATTGTAGCTTTT+GGG | + | chr1.4:87445830-87445849 | MS.gene90862:intron | 40.0% |
| ! | TTGATCTAGCACGCCTATTT+TGG | - | chr1.4:87445085-87445104 | None:intergenic | 40.0% |
| ! | TTTTCCTTTCATCAGGGGTT+AGG | + | chr1.4:87444850-87444869 | MS.gene90862:intron | 40.0% |
| !! | ATCTTTGGGCTTTGACTTGT+TGG | + | chr1.4:87443631-87443650 | MS.gene90862:intron | 40.0% |
| !! | CAGAGCATTTTTCTTGGTTC+TGG | - | chr1.4:87445247-87445266 | None:intergenic | 40.0% |
| !! | GCTGGAAAAATGGAAGTATC+TGG | + | chr1.4:87445916-87445935 | MS.gene90862:CDS | 40.0% |
| !!! | TCCTGCCTTTTTTTTTGTGG+GGG | - | chr1.4:87444744-87444763 | None:intergenic | 40.0% |
| AAATCACATCCAGACAGAGG+TGG | + | chr1.4:87444916-87444935 | MS.gene90862:CDS | 45.0% | |
| AATTGTAGTCCTCTGCTTGC+TGG | - | chr1.4:87445957-87445976 | None:intergenic | 45.0% | |
| AGCAGGACTACTTCCTAAAG+AGG | + | chr1.4:87444148-87444167 | MS.gene90862:intron | 45.0% | |
| CAAAATCACCACGGTGATAC+CGG | - | chr1.4:87443843-87443862 | None:intergenic | 45.0% | |
| CCAAAAGCTACAATGGTGAG+AGG | - | chr1.4:87445832-87445851 | None:intergenic | 45.0% | |
| GACAATGTGGTCATTTCGAG+GGG | - | chr1.4:87444496-87444515 | None:intergenic | 45.0% | |
| GCAAGCAGAGGACTACAATT+TGG | + | chr1.4:87445957-87445976 | MS.gene90862:CDS | 45.0% | |
| GCAGGACTACTTCCTAAAGA+GGG | + | chr1.4:87444149-87444168 | MS.gene90862:intron | 45.0% | |
| GTGACAATGTGGTCATTTCG+AGG | - | chr1.4:87444498-87444517 | None:intergenic | 45.0% | |
| TATTCCGTGTTTCCATCGGA+TGG | + | chr1.4:87445302-87445321 | MS.gene90862:CDS | 45.0% | |
| TCAAAGCCCAAAGATGAAGG+TGG | - | chr1.4:87443626-87443645 | None:intergenic | 45.0% | |
| TCAGGGAATGACTATCTAGC+TGG | + | chr1.4:87445898-87445917 | MS.gene90862:intron | 45.0% | |
| TCTGCTCAACAAGATCTTGC+TGG | + | chr1.4:87443470-87443489 | MS.gene90862:CDS | 45.0% | |
| TGAATCAGAGGTAGAGACTG+AGG | + | chr1.4:87445139-87445158 | MS.gene90862:CDS | 45.0% | |
| TGTCAGCCCAAAAGCTACAA+TGG | - | chr1.4:87445839-87445858 | None:intergenic | 45.0% | |
| TTTGGGCTGACAATCAAGAC+TGG | + | chr1.4:87445847-87445866 | MS.gene90862:intron | 45.0% | |
| ! | AGAGACTGAGGTTGATTCCA+AGG | + | chr1.4:87445151-87445170 | MS.gene90862:CDS | 45.0% |
| ! | CATGCCACTCAAATTTCTGG+TGG | - | chr1.4:87445339-87445358 | None:intergenic | 45.0% |
| ! | CCTCTCACCATTGTAGCTTT+TGG | + | chr1.4:87445829-87445848 | MS.gene90862:intron | 45.0% |
| ! | TCAAGAATCTGGAGCTGAAC+CGG | - | chr1.4:87444951-87444970 | None:intergenic | 45.0% |
| ! | TCTTTAGGAAGTAGTCCTGC+TGG | - | chr1.4:87444149-87444168 | None:intergenic | 45.0% |
| !! | GAGTCATCGTGATTTTGAGG+AGG | - | chr1.4:87443879-87443898 | None:intergenic | 45.0% |
| !!! | CCTGCCTTTTTTTTTGTGGG+GGG | - | chr1.4:87444743-87444762 | None:intergenic | 45.0% |
| !! | CAAAATAATATAAAAATTAA+AGG | - | chr1.4:87443541-87443560 | None:intergenic | 5.0% |
| !!! | ACTTTTTAAAAAAAAAAAAT+TGG | - | chr1.4:87444548-87444567 | None:intergenic | 5.0% |
| !!! | CTTTTTAAAAAAAAAAAATT+GGG | - | chr1.4:87444547-87444566 | None:intergenic | 5.0% |
| !!! | TTTTTAAAAAAAAAAAATTG+GGG | - | chr1.4:87444546-87444565 | None:intergenic | 5.0% |
| ACTTGAGGTTCCTCAAGGGA+CGG | + | chr1.4:87444461-87444480 | MS.gene90862:intron | 50.0% | |
| CCCCCCACAAAAAAAAAGGC+AGG | + | chr1.4:87444740-87444759 | MS.gene90862:intron | 50.0% | |
| CTTTCATCAGGGGTTAGGCT+GGG | + | chr1.4:87444855-87444874 | MS.gene90862:intron | 50.0% | |
| GATCTTATACCGCCATCCGA+TGG | - | chr1.4:87445317-87445336 | None:intergenic | 50.0% | |
| GATTTCAACTCCGTCCCTTG+AGG | - | chr1.4:87444474-87444493 | None:intergenic | 50.0% | |
| GCAGAGGACTACAATTTGGC+AGG | + | chr1.4:87445961-87445980 | MS.gene90862:CDS | 50.0% | |
| TTTCATCAGGGGTTAGGCTG+GGG | + | chr1.4:87444856-87444875 | MS.gene90862:intron | 50.0% | |
| ! | TGCGACTCATTGATGACAGC+TGG | + | chr1.4:87444888-87444907 | MS.gene90862:CDS | 50.0% |
| ACCGCCATCCGATGGAAACA+CGG | - | chr1.4:87445309-87445328 | None:intergenic | 55.0% | |
| CCAGCCTAACCCCTGATGAA+AGG | - | chr1.4:87444857-87444876 | None:intergenic | 55.0% | |
| CCTTTCATCAGGGGTTAGGC+TGG | + | chr1.4:87444854-87444873 | MS.gene90862:intron | 55.0% | |
| GCTACTGAACTCAGCCAGCA+TGG | + | chr1.4:87445026-87445045 | MS.gene90862:CDS | 55.0% | |
| TCCGTGTTTCCATCGGATGG+CGG | + | chr1.4:87445305-87445324 | MS.gene90862:CDS | 55.0% | |
| TGTAGGAGTCCACCTCTGTC+TGG | - | chr1.4:87444928-87444947 | None:intergenic | 55.0% | |
| ! | ACAGAGGTGGACTCCTACAC+CGG | + | chr1.4:87444929-87444948 | MS.gene90862:CDS | 55.0% |
| ! | ATCTGGAGCTGAACCGGTGT+AGG | - | chr1.4:87444945-87444964 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87443308 | 87445987 | 87443308 | ID=MS.gene90862 |
| chr1.4 | mRNA | 87443308 | 87445987 | 87443308 | ID=MS.gene90862.t1;Parent=MS.gene90862 |
| chr1.4 | exon | 87443308 | 87443491 | 87443308 | ID=MS.gene90862.t1.exon1;Parent=MS.gene90862.t1 |
| chr1.4 | CDS | 87443308 | 87443491 | 87443308 | ID=cds.MS.gene90862.t1;Parent=MS.gene90862.t1 |
| chr1.4 | exon | 87444865 | 87445389 | 87444865 | ID=MS.gene90862.t1.exon2;Parent=MS.gene90862.t1 |
| chr1.4 | CDS | 87444865 | 87445389 | 87444865 | ID=cds.MS.gene90862.t1;Parent=MS.gene90862.t1 |
| chr1.4 | exon | 87445902 | 87445987 | 87445902 | ID=MS.gene90862.t1.exon3;Parent=MS.gene90862.t1 |
| chr1.4 | CDS | 87445902 | 87445987 | 87445902 | ID=cds.MS.gene90862.t1;Parent=MS.gene90862.t1 |
| Gene Sequence |
| Protein sequence |
