Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042247.01.T01 | AET01266.1 | 62 | 250 | 24 | 2 | 1 | 179 | 1 | 250 | 4.44E-98 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042247.01.T01 | Q9LTH7 | 41.494 | 241 | 64 | 6 | 17 | 181 | 14 | 253 | 4.12E-51 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042247.01.T01 | G7LCL5 | 62.000 | 250 | 24 | 2 | 1 | 179 | 1 | 250 | 2.12e-98 | 298 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047944.01 | MsG0880042247.01 | 0.806920 | 6.507478e-50 | 3.576078e-47 |
| MsG0080047957.01 | MsG0880042247.01 | 0.809614 | 1.734041e-50 | 1.022994e-47 |
| MsG0080047959.01 | MsG0880042247.01 | 0.803473 | 3.427970e-49 | 1.724186e-46 |
| MsG0080048231.01 | MsG0880042247.01 | 0.804398 | 2.202175e-49 | 1.134243e-46 |
| MsG0180000470.01 | MsG0880042247.01 | 0.822513 | 2.275168e-53 | 1.908501e-50 |
| MsG0180000814.01 | MsG0880042247.01 | 0.800882 | 1.170095e-48 | 5.510215e-46 |
| MsG0180001063.01 | MsG0880042247.01 | 0.816638 | 4.988588e-52 | 3.554145e-49 |
| MsG0180001663.01 | MsG0880042247.01 | 0.819075 | 1.405227e-52 | 1.070503e-49 |
| MsG0180002282.01 | MsG0880042247.01 | 0.801574 | 8.442880e-49 | 4.045898e-46 |
| MsG0180003673.01 | MsG0880042247.01 | 0.815954 | 7.092901e-52 | 4.959858e-49 |
| MsG0180003686.01 | MsG0880042247.01 | 0.805104 | 1.568114e-49 | 8.225347e-47 |
| MsG0180004600.01 | MsG0880042247.01 | 0.813733 | 2.204100e-51 | 1.450963e-48 |
| MsG0180004765.01 | MsG0880042247.01 | 0.800551 | 1.366959e-48 | 6.383071e-46 |
| MsG0180005960.01 | MsG0880042247.01 | 0.808776 | 2.622938e-50 | 1.512948e-47 |
| MsG0180006134.01 | MsG0880042247.01 | 0.809258 | 2.068520e-50 | 1.208662e-47 |
| MsG0780040576.01 | MsG0880042247.01 | -0.825429 | 4.710995e-54 | 4.292620e-51 |
| MsG0780040869.01 | MsG0880042247.01 | 0.806937 | 6.455103e-50 | 3.548793e-47 |
| MsG0880042161.01 | MsG0880042247.01 | 0.820996 | 5.106496e-53 | 4.104063e-50 |
| MsG0880042247.01 | MsG0880042434.01 | 0.802624 | 5.135736e-49 | 2.527684e-46 |
| MsG0880042247.01 | MsG0880042454.01 | 0.828582 | 8.299371e-55 | 8.283841e-52 |
| MsG0880042247.01 | MsG0880042616.01 | 0.826311 | 2.908306e-54 | 2.717615e-51 |
| MsG0880042247.01 | MsG0880042622.01 | 0.802882 | 4.543905e-49 | 2.251133e-46 |
| MsG0880042247.01 | MsG0880043812.01 | 0.807688 | 4.473422e-50 | 2.507828e-47 |
| MsG0880042247.01 | MsG0880043941.01 | 0.801714 | 7.903644e-49 | 3.800827e-46 |
| MsG0880042247.01 | MsG0880044572.01 | 0.821599 | 3.705916e-53 | 3.028444e-50 |
| MsG0880042247.01 | MsG0880044573.01 | 0.858325 | 8.902036e-63 | 2.263372e-59 |
| MsG0880042247.01 | MsG0880045765.01 | 0.804987 | 1.658850e-49 | 8.675200e-47 |
| MsG0880042247.01 | MsG0880045926.01 | 0.810965 | 8.867944e-51 | 5.421731e-48 |
| MsG0880042247.01 | MsG0880045992.01 | 0.800517 | 1.388584e-48 | 6.478634e-46 |
| MsG0880042247.01 | MsG0880046264.01 | 0.805577 | 1.248492e-49 | 6.628675e-47 |
| MsG0880042247.01 | MsG0880047267.01 | 0.808755 | 2.649510e-50 | 1.527513e-47 |
| MsG0280011032.01 | MsG0880042247.01 | 0.821734 | 3.448725e-53 | 2.829152e-50 |
| MsG0380011537.01 | MsG0880042247.01 | 0.819841 | 9.395993e-53 | 7.312512e-50 |
| MsG0380011895.01 | MsG0880042247.01 | 0.823064 | 1.693855e-53 | 1.443209e-50 |
| MsG0380012007.01 | MsG0880042247.01 | 0.808460 | 3.064445e-50 | 1.753240e-47 |
| MsG0380012330.01 | MsG0880042247.01 | 0.815363 | 9.605964e-52 | 6.609167e-49 |
| MsG0380012361.01 | MsG0880042247.01 | 0.807478 | 4.957132e-50 | 2.763922e-47 |
| MsG0380013176.01 | MsG0880042247.01 | 0.801407 | 9.138613e-49 | 4.360761e-46 |
| MsG0380013342.01 | MsG0880042247.01 | 0.804082 | 2.562481e-49 | 1.309219e-46 |
| MsG0380014251.01 | MsG0880042247.01 | 0.801587 | 8.392750e-49 | 4.022990e-46 |
| MsG0380014727.01 | MsG0880042247.01 | 0.807020 | 6.197923e-50 | 3.414855e-47 |
| MsG0680030992.01 | MsG0880042247.01 | 0.819348 | 1.217586e-52 | 9.345209e-50 |
| MsG0680031334.01 | MsG0880042247.01 | 0.808155 | 3.558652e-50 | 2.019730e-47 |
| MsG0680031377.01 | MsG0880042247.01 | -0.810612 | 1.056872e-50 | 6.400404e-48 |
| MsG0680031379.01 | MsG0880042247.01 | 0.808447 | 3.083125e-50 | 1.763363e-47 |
| MsG0680032157.01 | MsG0880042247.01 | 0.840900 | 6.581093e-58 | 9.509737e-55 |
| MsG0680033639.01 | MsG0880042247.01 | 0.809048 | 2.293605e-50 | 1.332681e-47 |
| MsG0680035444.01 | MsG0880042247.01 | 0.835751 | 1.398627e-56 | 1.726453e-53 |
| MsG0480018883.01 | MsG0880042247.01 | 0.816167 | 6.358450e-52 | 4.472250e-49 |
| MsG0480019435.01 | MsG0880042247.01 | 0.808334 | 3.259709e-50 | 1.858827e-47 |
| MsG0480020322.01 | MsG0880042247.01 | 0.806605 | 7.585162e-50 | 4.134546e-47 |
| MsG0480020323.01 | MsG0880042247.01 | 0.819937 | 8.933031e-53 | 6.970921e-50 |
| MsG0480021280.01 | MsG0880042247.01 | 0.811383 | 7.195711e-51 | 4.447647e-48 |
| MsG0480021927.01 | MsG0880042247.01 | 0.819088 | 1.395613e-52 | 1.063571e-49 |
| MsG0480022615.01 | MsG0880042247.01 | -0.801248 | 9.847705e-49 | 4.680514e-46 |
| MsG0480022827.01 | MsG0880042247.01 | 0.816830 | 4.517215e-52 | 3.235293e-49 |
| MsG0480023045.01 | MsG0880042247.01 | 0.818460 | 1.937907e-52 | 1.451609e-49 |
| MsG0480023248.01 | MsG0880042247.01 | 0.823989 | 1.029044e-53 | 8.999174e-51 |
| MsG0480023251.01 | MsG0880042247.01 | 0.803664 | 3.128923e-49 | 1.581472e-46 |
| MsG0480023654.01 | MsG0880042247.01 | 0.832173 | 1.099727e-55 | 1.219500e-52 |
| MsG0580024038.01 | MsG0880042247.01 | 0.802390 | 5.740361e-49 | 2.808603e-46 |
| MsG0580024363.01 | MsG0880042247.01 | -0.810231 | 1.277484e-50 | 7.658385e-48 |
| MsG0580025758.01 | MsG0880042247.01 | 0.819949 | 8.878941e-53 | 6.930876e-50 |
| MsG0380016064.01 | MsG0880042247.01 | 0.808777 | 2.621051e-50 | 1.511923e-47 |
| MsG0380016182.01 | MsG0880042247.01 | 0.814595 | 1.422247e-51 | 9.583735e-49 |
| MsG0380016391.01 | MsG0880042247.01 | 0.846763 | 1.770164e-59 | 3.079167e-56 |
| MsG0380016475.01 | MsG0880042247.01 | 0.818491 | 1.906235e-52 | 1.429020e-49 |
| MsG0380017048.01 | MsG0880042247.01 | 0.844177 | 8.885746e-59 | 1.422882e-55 |
| MsG0380017220.01 | MsG0880042247.01 | 0.814699 | 1.348849e-51 | 9.114609e-49 |
| MsG0380017326.01 | MsG0880042247.01 | 0.840905 | 6.559204e-58 | 9.479680e-55 |
| MsG0380017543.01 | MsG0880042247.01 | 0.806466 | 8.115459e-50 | 4.408079e-47 |
| MsG0380017551.01 | MsG0880042247.01 | -0.805863 | 1.086988e-49 | 5.814120e-47 |
| MsG0480018236.01 | MsG0880042247.01 | 0.830485 | 2.859327e-55 | 3.016526e-52 |
| MsG0480018318.01 | MsG0880042247.01 | 0.836370 | 9.738211e-57 | 1.224757e-53 |
| MsG0580026304.01 | MsG0880042247.01 | 0.845915 | 3.013795e-59 | 5.100906e-56 |
| MsG0580027152.01 | MsG0880042247.01 | 0.806234 | 9.082132e-50 | 4.904230e-47 |
| MsG0580027679.01 | MsG0880042247.01 | 0.801685 | 8.011536e-49 | 3.849863e-46 |
| MsG0580027922.01 | MsG0880042247.01 | 0.803226 | 3.856155e-49 | 1.927254e-46 |
| MsG0580029925.01 | MsG0880042247.01 | 0.801299 | 9.614643e-49 | 4.575570e-46 |
| MsG0580030050.01 | MsG0880042247.01 | 0.804318 | 2.288505e-49 | 1.176296e-46 |
| MsG0280006588.01 | MsG0880042247.01 | 0.852497 | 4.439914e-61 | 9.295290e-58 |
| MsG0280006589.01 | MsG0880042247.01 | 0.812062 | 5.121862e-51 | 3.223479e-48 |
| MsG0280006590.01 | MsG0880042247.01 | 0.827550 | 1.470548e-54 | 1.424235e-51 |
| MsG0280006626.01 | MsG0880042247.01 | 0.830442 | 2.929921e-55 | 3.087120e-52 |
| MsG0280007023.01 | MsG0880042247.01 | 0.818053 | 2.395826e-52 | 1.774375e-49 |
| MsG0280007072.01 | MsG0880042247.01 | 0.802832 | 4.651633e-49 | 2.301787e-46 |
| MsG0280007864.01 | MsG0880042247.01 | -0.811480 | 6.854941e-51 | 4.248068e-48 |
| MsG0280008112.01 | MsG0880042247.01 | 0.814643 | 1.388141e-51 | 9.366088e-49 |
| MsG0280008894.01 | MsG0880042247.01 | 0.836707 | 7.991029e-57 | 1.015204e-53 |
| MsG0280009024.01 | MsG0880042247.01 | 0.814077 | 1.851260e-51 | 1.230078e-48 |
| MsG0280009646.01 | MsG0880042247.01 | 0.818320 | 2.084938e-52 | 1.555550e-49 |
| MsG0280010349.01 | MsG0880042247.01 | 0.815945 | 7.126988e-52 | 4.982238e-49 |
| MsG0780036080.01 | MsG0880042247.01 | 0.805455 | 1.323839e-49 | 7.007022e-47 |
| MsG0780036128.01 | MsG0880042247.01 | 0.833182 | 6.177087e-56 | 7.059434e-53 |
| MsG0780036978.01 | MsG0880042247.01 | 0.811991 | 5.306337e-51 | 3.333285e-48 |
| MsG0780037105.01 | MsG0880042247.01 | 0.802285 | 6.033242e-49 | 2.943996e-46 |
| MsG0780038439.01 | MsG0880042247.01 | 0.805082 | 1.584809e-49 | 8.308215e-47 |
| MsG0780038827.01 | MsG0880042247.01 | 0.840507 | 8.339496e-58 | 1.190509e-54 |
| MsG0780038828.01 | MsG0880042247.01 | 0.806808 | 6.872297e-50 | 3.765707e-47 |
| MsG0780038833.01 | MsG0880042247.01 | 0.816523 | 5.293926e-52 | 3.759860e-49 |
| MsG0780039143.01 | MsG0880042247.01 | 0.818234 | 2.180437e-52 | 1.622850e-49 |
| MsG0780039178.01 | MsG0880042247.01 | 0.815177 | 1.056516e-51 | 7.231676e-49 |
| MsG0780039498.01 | MsG0880042247.01 | 0.800905 | 1.157202e-48 | 5.452819e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042247.01.T01 | MTR_8g009110 | 62.000 | 250 | 24 | 2 | 1 | 179 | 1 | 250 | 5.37e-102 | 298 |
| MsG0880042247.01.T01 | MTR_8g009170 | 57.143 | 252 | 37 | 2 | 1 | 181 | 1 | 252 | 8.06e-93 | 272 |
| MsG0880042247.01.T01 | MTR_8g009170 | 57.143 | 252 | 37 | 2 | 1 | 181 | 1 | 252 | 3.61e-92 | 273 |
| MsG0880042247.01.T01 | MTR_8g009160 | 57.937 | 252 | 34 | 3 | 1 | 181 | 1 | 251 | 9.56e-92 | 272 |
| MsG0880042247.01.T01 | MTR_8g009120 | 57.083 | 240 | 44 | 2 | 1 | 181 | 1 | 240 | 5.32e-90 | 267 |
| MsG0880042247.01.T01 | MTR_8g028435 | 57.143 | 252 | 36 | 4 | 1 | 181 | 1 | 251 | 3.86e-89 | 265 |
| MsG0880042247.01.T01 | MTR_8g009090 | 57.540 | 252 | 35 | 3 | 1 | 181 | 1 | 251 | 6.72e-89 | 265 |
| MsG0880042247.01.T01 | MTR_8g009150 | 53.659 | 246 | 43 | 2 | 1 | 175 | 1 | 246 | 2.00e-87 | 260 |
| MsG0880042247.01.T01 | MTR_8g008930 | 56.522 | 253 | 37 | 5 | 1 | 181 | 1 | 252 | 2.01e-86 | 258 |
| MsG0880042247.01.T01 | MTR_4g117880 | 48.221 | 253 | 58 | 4 | 1 | 181 | 1 | 252 | 4.50e-71 | 219 |
| MsG0880042247.01.T01 | MTR_2g069210 | 45.490 | 255 | 64 | 5 | 1 | 181 | 1 | 254 | 7.96e-63 | 198 |
| MsG0880042247.01.T01 | MTR_2g069090 | 46.400 | 250 | 59 | 6 | 5 | 181 | 11 | 258 | 1.16e-61 | 195 |
| MsG0880042247.01.T01 | MTR_2g069190 | 45.238 | 252 | 59 | 6 | 5 | 181 | 11 | 258 | 5.80e-59 | 188 |
| MsG0880042247.01.T01 | MTR_2g069300 | 44.958 | 238 | 57 | 5 | 15 | 179 | 6 | 242 | 8.73e-57 | 182 |
| MsG0880042247.01.T01 | MTR_8g009080 | 39.759 | 249 | 75 | 4 | 6 | 181 | 38 | 284 | 1.06e-52 | 171 |
| MsG0880042247.01.T01 | MTR_8g009080 | 39.759 | 249 | 75 | 4 | 6 | 181 | 38 | 284 | 1.49e-52 | 171 |
| MsG0880042247.01.T01 | MTR_8g009080 | 39.759 | 249 | 75 | 4 | 6 | 181 | 38 | 284 | 5.85e-52 | 171 |
| MsG0880042247.01.T01 | MTR_8g041620 | 39.419 | 241 | 66 | 5 | 16 | 179 | 21 | 258 | 4.90e-48 | 160 |
| MsG0880042247.01.T01 | MTR_1g043760 | 39.662 | 237 | 69 | 5 | 15 | 179 | 7 | 241 | 2.32e-47 | 158 |
| MsG0880042247.01.T01 | MTR_1g043775 | 39.583 | 240 | 70 | 6 | 15 | 181 | 7 | 244 | 3.14e-47 | 156 |
| MsG0880042247.01.T01 | MTR_1g043775 | 39.583 | 240 | 70 | 6 | 15 | 181 | 7 | 244 | 8.13e-47 | 157 |
| MsG0880042247.01.T01 | MTR_8g041600 | 38.589 | 241 | 68 | 5 | 16 | 179 | 21 | 258 | 1.62e-46 | 154 |
| MsG0880042247.01.T01 | MTR_1g043770 | 38.136 | 236 | 73 | 5 | 15 | 179 | 7 | 240 | 4.58e-46 | 153 |
| MsG0880042247.01.T01 | MTR_1g043770 | 38.136 | 236 | 73 | 5 | 15 | 179 | 7 | 240 | 6.05e-46 | 154 |
| MsG0880042247.01.T01 | MTR_8g041600 | 38.589 | 241 | 68 | 5 | 16 | 179 | 21 | 258 | 1.39e-45 | 154 |
| MsG0880042247.01.T01 | MTR_1g043810 | 37.500 | 240 | 75 | 6 | 15 | 181 | 7 | 244 | 1.12e-44 | 150 |
| MsG0880042247.01.T01 | MTR_1g043810 | 37.500 | 240 | 75 | 6 | 15 | 181 | 7 | 244 | 3.05e-44 | 150 |
| MsG0880042247.01.T01 | MTR_1g093140 | 35.600 | 250 | 75 | 5 | 15 | 181 | 17 | 263 | 1.29e-42 | 146 |
| MsG0880042247.01.T01 | MTR_0032s0040 | 37.805 | 246 | 73 | 6 | 15 | 181 | 15 | 259 | 2.22e-42 | 145 |
| MsG0880042247.01.T01 | MTR_1g093120 | 35.802 | 243 | 75 | 6 | 17 | 181 | 18 | 257 | 2.70e-42 | 145 |
| MsG0880042247.01.T01 | MTR_7g029655 | 34.902 | 255 | 91 | 4 | 1 | 181 | 1 | 254 | 3.87e-41 | 142 |
| MsG0880042247.01.T01 | MTR_7g056347 | 34.177 | 237 | 83 | 6 | 17 | 181 | 22 | 257 | 3.82e-39 | 137 |
| MsG0880042247.01.T01 | MTR_2g069060 | 38.356 | 219 | 80 | 4 | 17 | 181 | 22 | 239 | 4.01e-39 | 136 |
| MsG0880042247.01.T01 | MTR_4g119410 | 35.652 | 230 | 75 | 4 | 17 | 174 | 22 | 250 | 5.36e-39 | 137 |
| MsG0880042247.01.T01 | MTR_2g069020 | 33.333 | 237 | 83 | 3 | 17 | 179 | 20 | 255 | 7.90e-39 | 136 |
| MsG0880042247.01.T01 | MTR_2g069020 | 33.333 | 237 | 83 | 3 | 17 | 179 | 20 | 255 | 1.49e-38 | 136 |
| MsG0880042247.01.T01 | MTR_1g093110 | 33.878 | 245 | 83 | 6 | 15 | 181 | 17 | 260 | 7.66e-38 | 134 |
| MsG0880042247.01.T01 | MTR_7g078010 | 34.052 | 232 | 76 | 5 | 17 | 174 | 22 | 250 | 1.87e-37 | 131 |
| MsG0880042247.01.T01 | MTR_7g078010 | 34.052 | 232 | 76 | 5 | 17 | 174 | 22 | 250 | 1.12e-36 | 130 |
| MsG0880042247.01.T01 | MTR_8g006930 | 32.609 | 230 | 82 | 4 | 17 | 174 | 22 | 250 | 1.49e-36 | 130 |
| MsG0880042247.01.T01 | MTR_1g044105 | 44.379 | 169 | 52 | 5 | 15 | 143 | 7 | 173 | 3.78e-36 | 124 |
| MsG0880042247.01.T01 | MTR_7g056393 | 33.478 | 230 | 80 | 4 | 17 | 174 | 22 | 250 | 4.30e-36 | 129 |
| MsG0880042247.01.T01 | MTR_2g069010 | 33.750 | 240 | 82 | 6 | 17 | 181 | 22 | 259 | 6.92e-36 | 129 |
| MsG0880042247.01.T01 | MTR_8g063070 | 34.043 | 235 | 82 | 7 | 17 | 179 | 22 | 255 | 2.27e-35 | 127 |
| MsG0880042247.01.T01 | MTR_4g024660 | 32.766 | 235 | 85 | 5 | 17 | 179 | 22 | 255 | 2.86e-35 | 127 |
| MsG0880042247.01.T01 | MTR_2g069060 | 40.936 | 171 | 62 | 3 | 49 | 181 | 48 | 217 | 4.10e-35 | 124 |
| MsG0880042247.01.T01 | MTR_2g068950 | 32.157 | 255 | 97 | 5 | 1 | 181 | 1 | 253 | 1.48e-34 | 125 |
| MsG0880042247.01.T01 | MTR_8g469400 | 33.784 | 222 | 87 | 6 | 17 | 179 | 22 | 242 | 2.99e-34 | 124 |
| MsG0880042247.01.T01 | MTR_2g068960 | 32.941 | 255 | 95 | 6 | 1 | 181 | 1 | 253 | 2.13e-33 | 122 |
| MsG0880042247.01.T01 | MTR_8g062600 | 32.340 | 235 | 86 | 5 | 17 | 179 | 22 | 255 | 2.26e-33 | 122 |
| MsG0880042247.01.T01 | MTR_1g070185 | 32.489 | 237 | 88 | 4 | 16 | 181 | 22 | 257 | 6.70e-33 | 120 |
| MsG0880042247.01.T01 | MTR_7g056353 | 32.212 | 208 | 94 | 5 | 17 | 179 | 24 | 229 | 9.60e-31 | 117 |
| MsG0880042247.01.T01 | MTR_1g032220 | 29.832 | 238 | 95 | 3 | 15 | 181 | 24 | 260 | 4.38e-29 | 110 |
| MsG0880042247.01.T01 | MTR_4g099380 | 38.065 | 155 | 64 | 3 | 19 | 142 | 129 | 282 | 2.31e-28 | 107 |
| MsG0880042247.01.T01 | MTR_2g069070 | 39.241 | 158 | 78 | 3 | 5 | 146 | 11 | 166 | 4.33e-26 | 99.0 |
| MsG0880042247.01.T01 | MTR_1g032140 | 29.412 | 238 | 96 | 3 | 15 | 181 | 17 | 253 | 4.34e-26 | 102 |
| MsG0880042247.01.T01 | MTR_1g032250 | 28.151 | 238 | 99 | 3 | 15 | 181 | 24 | 260 | 8.58e-26 | 102 |
| MsG0880042247.01.T01 | MTR_7g105070 | 28.390 | 236 | 96 | 5 | 15 | 178 | 11 | 245 | 7.76e-25 | 99.4 |
| MsG0880042247.01.T01 | MTR_8g009180 | 43.796 | 137 | 22 | 3 | 99 | 181 | 46 | 181 | 1.18e-24 | 97.4 |
| MsG0880042247.01.T01 | MTR_7g056370 | 31.613 | 155 | 71 | 3 | 22 | 142 | 6 | 159 | 3.76e-20 | 84.3 |
| MsG0880042247.01.T01 | MTR_1g032230 | 36.842 | 114 | 58 | 1 | 16 | 115 | 19 | 132 | 4.46e-17 | 77.0 |
| MsG0880042247.01.T01 | MTR_1g043840 | 57.627 | 59 | 24 | 1 | 53 | 111 | 271 | 328 | 1.39e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042247.01.T01 | AT5G59540 | 41.494 | 241 | 64 | 6 | 17 | 181 | 14 | 253 | 6.82e-53 | 170 |
| MsG0880042247.01.T01 | AT5G59540 | 41.494 | 241 | 64 | 6 | 17 | 181 | 14 | 253 | 4.20e-52 | 171 |
| MsG0880042247.01.T01 | AT1G04350 | 40.084 | 237 | 69 | 5 | 17 | 181 | 11 | 246 | 2.47e-50 | 166 |
| MsG0880042247.01.T01 | AT1G06650 | 38.272 | 243 | 72 | 4 | 17 | 182 | 15 | 256 | 5.14e-48 | 159 |
| MsG0880042247.01.T01 | AT1G06620 | 37.712 | 236 | 73 | 3 | 19 | 181 | 18 | 252 | 5.40e-48 | 158 |
| MsG0880042247.01.T01 | AT1G06650 | 38.272 | 243 | 72 | 4 | 17 | 182 | 15 | 256 | 1.39e-47 | 159 |
| MsG0880042247.01.T01 | AT1G06640 | 38.272 | 243 | 72 | 5 | 17 | 182 | 15 | 256 | 1.42e-47 | 157 |
| MsG0880042247.01.T01 | AT1G06640 | 38.272 | 243 | 72 | 5 | 17 | 182 | 15 | 256 | 1.74e-47 | 157 |
| MsG0880042247.01.T01 | AT1G06620 | 37.712 | 236 | 73 | 3 | 19 | 181 | 18 | 252 | 5.20e-47 | 157 |
| MsG0880042247.01.T01 | AT1G06640 | 38.272 | 243 | 72 | 5 | 17 | 182 | 15 | 256 | 8.62e-47 | 157 |
| MsG0880042247.01.T01 | AT5G43440 | 35.537 | 242 | 81 | 3 | 15 | 181 | 11 | 252 | 1.97e-46 | 154 |
| MsG0880042247.01.T01 | AT5G43440 | 35.537 | 242 | 81 | 3 | 15 | 181 | 11 | 252 | 1.46e-45 | 154 |
| MsG0880042247.01.T01 | AT1G06645 | 36.820 | 239 | 78 | 3 | 17 | 182 | 28 | 266 | 2.51e-45 | 153 |
| MsG0880042247.01.T01 | AT2G30840 | 36.100 | 241 | 77 | 4 | 17 | 181 | 10 | 249 | 9.11e-45 | 150 |
| MsG0880042247.01.T01 | AT5G43450 | 36.667 | 240 | 78 | 5 | 15 | 181 | 11 | 249 | 1.82e-44 | 149 |
| MsG0880042247.01.T01 | AT5G59530 | 39.256 | 242 | 67 | 8 | 17 | 181 | 13 | 251 | 1.98e-44 | 150 |
| MsG0880042247.01.T01 | AT2G30840 | 36.515 | 241 | 76 | 5 | 17 | 181 | 10 | 249 | 2.09e-44 | 150 |
| MsG0880042247.01.T01 | AT2G30840 | 36.515 | 241 | 76 | 5 | 17 | 181 | 10 | 249 | 2.35e-44 | 150 |
| MsG0880042247.01.T01 | AT5G43450 | 36.667 | 240 | 78 | 5 | 15 | 181 | 11 | 249 | 8.92e-44 | 149 |
| MsG0880042247.01.T01 | AT2G30830 | 34.177 | 237 | 83 | 3 | 17 | 181 | 10 | 245 | 1.39e-41 | 143 |
| MsG0880042247.01.T01 | AT1G04380 | 40.116 | 172 | 64 | 2 | 48 | 181 | 62 | 232 | 6.66e-41 | 139 |
| MsG0880042247.01.T01 | AT1G04380 | 40.116 | 172 | 64 | 2 | 48 | 181 | 62 | 232 | 5.13e-40 | 139 |
| MsG0880042247.01.T01 | AT1G03410 | 34.025 | 241 | 82 | 6 | 17 | 181 | 9 | 248 | 6.56e-38 | 134 |
| MsG0880042247.01.T01 | AT1G03410 | 34.025 | 241 | 82 | 6 | 17 | 181 | 46 | 285 | 1.47e-37 | 133 |
| MsG0880042247.01.T01 | AT2G25450 | 32.328 | 232 | 84 | 4 | 17 | 176 | 10 | 240 | 1.03e-36 | 130 |
| MsG0880042247.01.T01 | AT1G03400 | 33.624 | 229 | 85 | 4 | 17 | 179 | 9 | 236 | 4.74e-36 | 129 |
| MsG0880042247.01.T01 | AT1G03400 | 33.624 | 229 | 85 | 4 | 17 | 179 | 9 | 236 | 8.20e-36 | 129 |
| MsG0880042247.01.T01 | AT3G61400 | 29.630 | 243 | 91 | 3 | 15 | 178 | 12 | 253 | 1.25e-32 | 118 |
| MsG0880042247.01.T01 | AT3G61400 | 29.630 | 243 | 91 | 3 | 15 | 178 | 12 | 253 | 4.27e-32 | 119 |
Find 38 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTTCCCACACTCAATTC+TGG | 0.213381 | 8:+6002499 | None:intergenic |
| GAAACAAAAGCTGGTGTAAA+AGG | 0.285364 | 8:-6003817 | MsG0880042247.01.T01:CDS |
| TCTTCTGGTTTGAGAGTATC+AGG | 0.295106 | 8:+6003400 | None:intergenic |
| CACAGCACAGGAAACTCTTC+TGG | 0.345221 | 8:+6003385 | None:intergenic |
| GAATTGTTGTCAGAAGCTTT+AGG | 0.379576 | 8:-6002558 | MsG0880042247.01.T01:intron |
| CCCACACTCAATTCTGGTTC+AGG | 0.401380 | 8:+6002505 | None:intergenic |
| TTGGCTTTCTCATGTTTGTC+AGG | 0.408748 | 8:+6003745 | None:intergenic |
| ATAGCTCACCAGCACTCAAT+TGG | 0.417970 | 8:-6003453 | MsG0880042247.01.T01:CDS |
| AATAACATGGCTTGTGTTGT+TGG | 0.428788 | 8:+6003726 | None:intergenic |
| CATGTTTGTCAGGTTGATGA+TGG | 0.437515 | 8:+6003755 | None:intergenic |
| AAGAGTTTCCTGTGCTGTGC+AGG | 0.457821 | 8:-6003381 | MsG0880042247.01.T01:intron |
| GTTCTTTCAATATAGAATCA+AGG | 0.486469 | 8:+6003854 | None:intergenic |
| TTCAATATAGAATCAAGGTT+AGG | 0.492206 | 8:+6003859 | None:intergenic |
| ATCTCCTCAAGAACACTCAA+AGG | 0.510634 | 8:+6003583 | None:intergenic |
| GAGTGTTCTTGAGGAGATGA+AGG | 0.513387 | 8:-6003578 | MsG0880042247.01.T01:CDS |
| GGTGTAAAAGGACTTGTTGA+TGG | 0.518526 | 8:-6003805 | MsG0880042247.01.T01:CDS |
| TATAGAATCAAGGTTAGGCT+TGG | 0.520854 | 8:+6003864 | None:intergenic |
| GCTCACCAGCACTCAATTGG+AGG | 0.527842 | 8:-6003450 | MsG0880042247.01.T01:CDS |
| CTCAATTCTGGTTCAGGACA+AGG | 0.528996 | 8:+6002511 | None:intergenic |
| CTATCCCTCCAATTGAGTGC+TGG | 0.534831 | 8:+6003445 | None:intergenic |
| TCTCCTCAAGAACACTCAAA+GGG | 0.535297 | 8:+6003584 | None:intergenic |
| GGTTGATGATGGAATAAACT+TGG | 0.541944 | 8:+6003766 | None:intergenic |
| AGATGAAGGATGGTGTGAAG+AGG | 0.547649 | 8:-6003564 | MsG0880042247.01.T01:CDS |
| AATCCCTTTGAGTGTTCTTG+AGG | 0.553310 | 8:-6003587 | MsG0880042247.01.T01:CDS |
| TGTGAAGAGGTTTCATGAGA+TGG | 0.568486 | 8:-6003551 | MsG0880042247.01.T01:CDS |
| GAATTTGATGAAACAAAAGC+TGG | 0.578863 | 8:-6003826 | MsG0880042247.01.T01:CDS |
| AAAATTACTATTATAAACAA+AGG | 0.603110 | 8:+6003483 | None:intergenic |
| GTTAGGCTTGGTTGTACCCG+CGG | 0.609084 | 8:+6003876 | None:intergenic |
| TATACATACCTGCACAGCAC+AGG | 0.626589 | 8:+6003373 | None:intergenic |
| CTCACCAGCACTCAATTGGA+GGG | 0.626812 | 8:-6003449 | MsG0880042247.01.T01:CDS |
| GTTCTTGAGGAGATGAAGGA+TGG | 0.628456 | 8:-6003574 | MsG0880042247.01.T01:CDS |
| TCTGGTTTGAGAGTATCAGG+TGG | 0.638557 | 8:+6003403 | None:intergenic |
| GGTCTATGACAGGAATAACA+TGG | 0.670694 | 8:+6003713 | None:intergenic |
| TTTCTTGTTGAAGCACTGTG+AGG | 0.685485 | 8:+6002455 | None:intergenic |
| TCCTGAACCAGAATTGAGTG+TGG | 0.697025 | 8:-6002506 | MsG0880042247.01.T01:CDS |
| CCTGAACCAGAATTGAGTGT+GGG | 0.721689 | 8:-6002505 | MsG0880042247.01.T01:CDS |
| GTAAAAGGACTTGTTGATGG+AGG | 0.724997 | 8:-6003802 | MsG0880042247.01.T01:CDS |
| AATTCTGGTTCAGGACAAGG+AGG | 0.727098 | 8:+6002514 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTACTATTATAAACAA+AGG | + | Chr8:6002847-6002866 | None:intergenic | 10.0% |
| !!! | GATTAATACATTTTAAAATA+AGG | + | Chr8:6003510-6003529 | None:intergenic | 10.0% |
| !! | TCTTGAGAATATAAATATTA+CGG | + | Chr8:6003119-6003138 | None:intergenic | 15.0% |
| !! | GTCTGTTAAATAATATGTAA+TGG | - | Chr8:6003063-6003082 | MsG0880042247.01.T01:intron | 20.0% |
| !! | TATTAGAGATGTTAGAAAAA+AGG | + | Chr8:6003436-6003455 | None:intergenic | 20.0% |
| !!! | AATGGATCTTTTCTTATAAT+TGG | - | Chr8:6003081-6003100 | MsG0880042247.01.T01:intron | 20.0% |
| !!! | ATGGATCTTTTCTTATAATT+GGG | - | Chr8:6003082-6003101 | MsG0880042247.01.T01:intron | 20.0% |
| ! | ATGATCATAACCAAATTTCA+AGG | + | Chr8:6003005-6003024 | None:intergenic | 25.0% |
| ! | CTTTATTGTCAATCTTATCA+AGG | + | Chr8:6002638-6002657 | None:intergenic | 25.0% |
| ! | GTTCTTTCAATATAGAATCA+AGG | + | Chr8:6002476-6002495 | None:intergenic | 25.0% |
| ! | TTCAATATAGAATCAAGGTT+AGG | + | Chr8:6002471-6002490 | None:intergenic | 25.0% |
| ! | TTTATTTGCTCCTTGAAATT+TGG | - | Chr8:6002992-6003011 | MsG0880042247.01.T01:intron | 25.0% |
| !!! | CAATATTTTTTTCTCTCTGA+TGG | - | Chr8:6003674-6003693 | MsG0880042247.01.T01:intron | 25.0% |
| !!! | TTTTTTCAGGTTGTTAATCA+TGG | - | Chr8:6002717-6002736 | MsG0880042247.01.T01:intron | 25.0% |
| AAAGATCCAAGTATTCATCA+AGG | - | Chr8:6002654-6002673 | MsG0880042247.01.T01:intron | 30.0% | |
| AAGATCCAAGTATTCATCAA+GGG | - | Chr8:6002655-6002674 | MsG0880042247.01.T01:intron | 30.0% | |
| AGAGATATACTGCTACAATA+TGG | - | Chr8:6003712-6003731 | MsG0880042247.01.T01:intron | 30.0% | |
| GAATTTGATGAAACAAAAGC+TGG | - | Chr8:6002501-6002520 | MsG0880042247.01.T01:CDS | 30.0% | |
| GAGATATACTGCTACAATAT+GGG | - | Chr8:6003713-6003732 | MsG0880042247.01.T01:intron | 30.0% | |
| GATTCATAGGACTTAAGTTA+AGG | - | Chr8:6003279-6003298 | MsG0880042247.01.T01:intron | 30.0% | |
| GGAAATACATGATGAATCTT+GGG | - | Chr8:6003734-6003753 | MsG0880042247.01.T01:CDS | 30.0% | |
| GTAGCACTAAAATTTCAGAT+TGG | - | Chr8:6003027-6003046 | MsG0880042247.01.T01:intron | 30.0% | |
| ! | TCTTTTCTTATAATTGGGCT+AGG | - | Chr8:6003087-6003106 | MsG0880042247.01.T01:intron | 30.0% |
| !! | CATTTCTAGCAAAGAAGAAA+AGG | + | Chr8:6003554-6003573 | None:intergenic | 30.0% |
| !!! | AGAAATGCATCTTTTTTCAC+AGG | - | Chr8:6003567-6003586 | MsG0880042247.01.T01:CDS | 30.0% |
| !!! | TGAAACTTGAGGTTTTTTTC+AGG | - | Chr8:6002704-6002723 | MsG0880042247.01.T01:intron | 30.0% |
| ACAATCCCTTGATGAATACT+TGG | + | Chr8:6002663-6002682 | None:intergenic | 35.0% | |
| AGGGATTGTTAGCAAAATCA+AGG | - | Chr8:6002674-6002693 | MsG0880042247.01.T01:intron | 35.0% | |
| ATCTTATCAAGGTCTATGAC+AGG | + | Chr8:6002627-6002646 | None:intergenic | 35.0% | |
| CTCCAATGTTAGTGATTCAT+AGG | - | Chr8:6003266-6003285 | MsG0880042247.01.T01:intron | 35.0% | |
| GAAACAAAAGCTGGTGTAAA+AGG | - | Chr8:6002510-6002529 | MsG0880042247.01.T01:CDS | 35.0% | |
| GAATTGTTGTCAGAAGCTTT+AGG | - | Chr8:6003769-6003788 | MsG0880042247.01.T01:CDS | 35.0% | |
| GACTAAATTTCAGTGAGTTG+TGG | - | Chr8:6003345-6003364 | MsG0880042247.01.T01:intron | 35.0% | |
| GGGAAATACATGATGAATCT+TGG | - | Chr8:6003733-6003752 | MsG0880042247.01.T01:CDS | 35.0% | |
| GTCCTATGAATCACTAACAT+TGG | + | Chr8:6003271-6003290 | None:intergenic | 35.0% | |
| TATAGAATCAAGGTTAGGCT+TGG | + | Chr8:6002466-6002485 | None:intergenic | 35.0% | |
| ! | AATAACATGGCTTGTGTTGT+TGG | + | Chr8:6002604-6002623 | None:intergenic | 35.0% |
| !! | GGTTGATGATGGAATAAACT+TGG | + | Chr8:6002564-6002583 | None:intergenic | 35.0% |
| !!! | CTCAAACTTAGCCACTTTTT+TGG | - | Chr8:6003304-6003323 | MsG0880042247.01.T01:intron | 35.0% |
| !!! | TGCATCTTTTTTCACAGGAA+AGG | - | Chr8:6003572-6003591 | MsG0880042247.01.T01:CDS | 35.0% |
| AATCCCTTTGAGTGTTCTTG+AGG | - | Chr8:6002740-6002759 | MsG0880042247.01.T01:intron | 40.0% | |
| ATCTCCTCAAGAACACTCAA+AGG | + | Chr8:6002747-6002766 | None:intergenic | 40.0% | |
| GGTCTATGACAGGAATAACA+TGG | + | Chr8:6002617-6002636 | None:intergenic | 40.0% | |
| TCTCCTCAAGAACACTCAAA+GGG | + | Chr8:6002746-6002765 | None:intergenic | 40.0% | |
| TGTACGACTTAAATACGCAG+AGG | + | Chr8:6003401-6003420 | None:intergenic | 40.0% | |
| TGTGAAGAGGTTTCATGAGA+TGG | - | Chr8:6002776-6002795 | MsG0880042247.01.T01:intron | 40.0% | |
| ! | AAGGAAGCATGTGAAACTTG+AGG | - | Chr8:6002693-6002712 | MsG0880042247.01.T01:intron | 40.0% |
| ! | CTTCGACTAGTCCAAAAAAG+TGG | + | Chr8:6003318-6003337 | None:intergenic | 40.0% |
| ! | TTGGCTTTCTCATGTTTGTC+AGG | + | Chr8:6002585-6002604 | None:intergenic | 40.0% |
| !! | CATGTTTGTCAGGTTGATGA+TGG | + | Chr8:6002575-6002594 | None:intergenic | 40.0% |
| !! | GGTGTAAAAGGACTTGTTGA+TGG | - | Chr8:6002522-6002541 | MsG0880042247.01.T01:CDS | 40.0% |
| !! | GTAAAAGGACTTGTTGATGG+AGG | - | Chr8:6002525-6002544 | MsG0880042247.01.T01:CDS | 40.0% |
| !! | TCTTCTGGTTTGAGAGTATC+AGG | + | Chr8:6002930-6002949 | None:intergenic | 40.0% |
| !! | TTGGACTAGTCGAAGTAACA+AGG | - | Chr8:6003323-6003342 | MsG0880042247.01.T01:intron | 40.0% |
| !! | TTTCTTGTTGAAGCACTGTG+AGG | + | Chr8:6003875-6003894 | None:intergenic | 40.0% |
| AGATGAAGGATGGTGTGAAG+AGG | - | Chr8:6002763-6002782 | MsG0880042247.01.T01:intron | 45.0% | |
| ATAGCTCACCAGCACTCAAT+TGG | - | Chr8:6002874-6002893 | MsG0880042247.01.T01:intron | 45.0% | |
| CCTGAACCAGAATTGAGTGT+GGG | - | Chr8:6003822-6003841 | MsG0880042247.01.T01:CDS | 45.0% | |
| GAGTGTTCTTGAGGAGATGA+AGG | - | Chr8:6002749-6002768 | MsG0880042247.01.T01:intron | 45.0% | |
| GTTCTTGAGGAGATGAAGGA+TGG | - | Chr8:6002753-6002772 | MsG0880042247.01.T01:intron | 45.0% | |
| GTTGTTCCCACACTCAATTC+TGG | + | Chr8:6003831-6003850 | None:intergenic | 45.0% | |
| TATACATACCTGCACAGCAC+AGG | + | Chr8:6002957-6002976 | None:intergenic | 45.0% | |
| TCCTGAACCAGAATTGAGTG+TGG | - | Chr8:6003821-6003840 | MsG0880042247.01.T01:CDS | 45.0% | |
| TGACACAACACTGATACACG+TGG | - | Chr8:6003189-6003208 | MsG0880042247.01.T01:intron | 45.0% | |
| !! | AATTCTGGTTCAGGACAAGG+AGG | + | Chr8:6003816-6003835 | None:intergenic | 45.0% |
| !! | CTCAATTCTGGTTCAGGACA+AGG | + | Chr8:6003819-6003838 | None:intergenic | 45.0% |
| !! | TCTGGTTTGAGAGTATCAGG+TGG | + | Chr8:6002927-6002946 | None:intergenic | 45.0% |
| AAGAGTTTCCTGTGCTGTGC+AGG | - | Chr8:6002946-6002965 | MsG0880042247.01.T01:intron | 50.0% | |
| CACAGCACAGGAAACTCTTC+TGG | + | Chr8:6002945-6002964 | None:intergenic | 50.0% | |
| CTATCCCTCCAATTGAGTGC+TGG | + | Chr8:6002885-6002904 | None:intergenic | 50.0% | |
| CTCACCAGCACTCAATTGGA+GGG | - | Chr8:6002878-6002897 | MsG0880042247.01.T01:intron | 50.0% | |
| TTCAGTGAGTTGTGGCAGCA+AGG | - | Chr8:6003353-6003372 | MsG0880042247.01.T01:intron | 50.0% | |
| !! | CCCACACTCAATTCTGGTTC+AGG | + | Chr8:6003825-6003844 | None:intergenic | 50.0% |
| GCTCACCAGCACTCAATTGG+AGG | - | Chr8:6002877-6002896 | MsG0880042247.01.T01:intron | 55.0% | |
| ! | GTTAGGCTTGGTTGTACCCG+CGG | + | Chr8:6002454-6002473 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 6002444 | 6003905 | 6002444 | ID=MsG0880042247.01;Name=MsG0880042247.01 |
| Chr8 | mRNA | 6002444 | 6003905 | 6002444 | ID=MsG0880042247.01.T01;Parent=MsG0880042247.01;Name=MsG0880042247.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0|0|1|1|1|3|0|182 |
| Chr8 | exon | 6003723 | 6003905 | 6003723 | ID=MsG0880042247.01.T01:exon:1043;Parent=MsG0880042247.01.T01 |
| Chr8 | exon | 6003382 | 6003623 | 6003382 | ID=MsG0880042247.01.T01:exon:1042;Parent=MsG0880042247.01.T01 |
| Chr8 | exon | 6002444 | 6002567 | 6002444 | ID=MsG0880042247.01.T01:exon:1041;Parent=MsG0880042247.01.T01 |
| Chr8 | CDS | 6003723 | 6003905 | 6003723 | ID=MsG0880042247.01.T01:cds;Parent=MsG0880042247.01.T01 |
| Chr8 | CDS | 6003382 | 6003623 | 6003382 | ID=MsG0880042247.01.T01:cds;Parent=MsG0880042247.01.T01 |
| Chr8 | CDS | 6002444 | 6002567 | 6002444 | ID=MsG0880042247.01.T01:cds;Parent=MsG0880042247.01.T01 |
| Gene Sequence |
| Protein sequence |
