AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022378.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022378.01.T01 MTR_4g088735 83.793 290 33 2 1 290 1 276 1.05e-97 288
MsG0480022378.01.T01 MTR_4g046780 56.055 289 87 9 1 288 1 250 2.06e-75 231
MsG0480022378.01.T01 MTR_4g088740 46.455 409 89 10 1 288 1 400 8.13e-75 234
MsG0480022378.01.T01 MTR_1g055415 48.276 348 113 9 1 288 1 341 6.94e-74 230
MsG0480022378.01.T01 MTR_5g047890 48.485 363 89 12 1 288 1 340 2.19e-73 229
MsG0480022378.01.T01 MTR_4g046767 45.806 310 81 10 16 288 16 275 1.30e-63 201
MsG0480022378.01.T01 MTR_3g012020 44.279 402 99 12 1 288 1 391 1.03e-61 200
MsG0480022378.01.T01 MTR_4g066680 56.989 186 63 3 105 290 170 338 6.92e-60 194
MsG0480022378.01.T01 MTR_6g042490 49.104 279 96 6 15 288 16 253 2.43e-52 172
MsG0480022378.01.T01 MTR_2g097240 66.929 127 41 1 162 288 214 339 3.81e-52 174
MsG0480022378.01.T01 MTR_4g017240 63.636 143 48 1 147 289 208 346 1.16e-46 160
MsG0480022378.01.T01 MTR_8g092230 48.828 256 89 11 51 289 65 295 1.21e-45 156
MsG0480022378.01.T01 MTR_4g124400 43.713 167 53 3 40 193 68 206 1.86e-22 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022378.01.T01 AT2G34700 44.966 149 75 2 146 288 26 173 1.87e-37 131
MsG0480022378.01.T01 AT2G33790 38.647 207 116 6 93 290 35 239 1.18e-29 112
MsG0480022378.01.T01 AT1G28290 45.926 135 64 3 163 290 183 315 3.10e-29 113
MsG0480022378.01.T01 AT1G28290 45.926 135 64 3 163 290 227 359 4.49e-29 114

Find 121 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGGTGTTGATACTCTTT+TGG 0.212871 4:-71790906 MsG0480022378.01.T01:CDS
TTGTGTGAGGAGGGTAAGTT+GGG 0.250591 4:+71791359 None:intergenic
GCATAGCTTGTGATGTTCTT+TGG 0.271925 4:+71788731 None:intergenic
AACCTTCATGGTGGTCTTAC+CGG 0.294151 4:-71788653 MsG0480022378.01.T01:CDS
TGAACAGCTATAAAGCTTCT+AGG 0.305603 4:+71790959 None:intergenic
CTTCGCCACAAATGGCTTCT+CGG 0.313010 4:+71788616 None:intergenic
TTGGGAGCTACTCAAATTCT+TGG 0.313293 4:-71790887 MsG0480022378.01.T01:intron
TTGGAACAGGAGGGTGTAAT+GGG 0.327634 4:+71791041 None:intergenic
GTTGTGTGAGGAGGGTAAGT+TGG 0.333157 4:+71791358 None:intergenic
AACCGTTCTTATCAGTGGTC+TGG 0.337205 4:+71788771 None:intergenic
GGGTGTAGAGGGGTGTGAAT+AGG 0.348091 4:+71791223 None:intergenic
AGGGGTGTAGGATGCAATGG+TGG 0.362731 4:+71790983 None:intergenic
GGTGGGTGTGCTGGAGCAGG+TGG 0.379735 4:+71791001 None:intergenic
GGGTGTAGTGGTGGATGTGC+TGG 0.382371 4:+71791097 None:intergenic
GGTGGTGGTGATGGTGGTGA+GGG 0.385537 4:+71791281 None:intergenic
TCCAACCGTGTAGAGAATAA+AGG 0.386366 4:+71788586 None:intergenic
GGAGCAACAGGTGTGTGGAC+TGG 0.395530 4:+71791118 None:intergenic
TTAAAGCCTTCGAACCTTCA+TGG 0.396084 4:-71788665 MsG0480022378.01.T01:CDS
GAGCAACAGGTGTGTGGACT+GGG 0.397889 4:+71791119 None:intergenic
CCCTTTATTCTCTACACGGT+TGG 0.398136 4:-71788587 MsG0480022378.01.T01:CDS
AGTGAATGTGGTGGTGGTGA+TGG 0.399069 4:+71791272 None:intergenic
TGGTGGTGGTGATGGTGGTG+AGG 0.400493 4:+71791280 None:intergenic
GTTGGTGGGTGAAGTGGAGC+TGG 0.401765 4:+71791334 None:intergenic
GTCTTACCGGTGCTGGTCTT+AGG 0.411218 4:-71788640 MsG0480022378.01.T01:CDS
GCGTTAGCCGGTGGGTGAAC+CGG 0.414913 4:+71791304 None:intergenic
GAGCAGGAGGGTGAGGATGA+TGG 0.417914 4:+71791146 None:intergenic
ACCGTTCTTATCAGTGGTCT+GGG 0.419238 4:+71788772 None:intergenic
GGTGAGGATGATGGTGGTGG+TGG 0.424562 4:+71791155 None:intergenic
TTCGAAGGCTTTAATCCATT+CGG 0.425021 4:+71788674 None:intergenic
TTCGCCACAAATGGCTTCTC+GGG 0.425868 4:+71788617 None:intergenic
GTTGGAACAGGAGGGTGTAA+TGG 0.425934 4:+71791040 None:intergenic
CATGGTGGTCTTACCGGTGC+TGG 0.430807 4:-71788647 MsG0480022378.01.T01:CDS
AGTTGGTGGTTTAGCAGGTA+CGG 0.432220 4:+71791183 None:intergenic
TGGTGGTGAGGGGCGTTAGC+CGG 0.434825 4:+71791292 None:intergenic
CCGTGAGTTGGTGGTTTAGC+AGG 0.434974 4:+71791178 None:intergenic
GTGTGGACTGGGGAAGGAGC+AGG 0.436294 4:+71791130 None:intergenic
AATGGTGGGTGTGCTGGAGC+AGG 0.443203 4:+71790998 None:intergenic
GAGGGTGAGGATGATGGTGG+TGG 0.446074 4:+71791152 None:intergenic
GGATGCAATGGTGGGTGTGC+TGG 0.446386 4:+71790992 None:intergenic
AGAAGCTTTATAGCTGTTCA+AGG 0.449540 4:-71790956 MsG0480022378.01.T01:CDS
GCTGGAGCAGGTGGGTGTAA+TGG 0.449877 4:+71791010 None:intergenic
GGAAGACCCTTCGCCACAAA+TGG 0.450329 4:+71788608 None:intergenic
GGGGAAGGAGCAGGAGGGTG+AGG 0.451502 4:+71791139 None:intergenic
GTGTGAACAGGTGGGTGTAG+TGG 0.456043 4:+71791085 None:intergenic
GGTGGATGTGCTGGAGCAAC+AGG 0.458900 4:+71791106 None:intergenic
TGAACAGGTGGGTGTAGTGG+TGG 0.461198 4:+71791088 None:intergenic
AATGGAGGGTGAGTTGGAAC+AGG 0.461672 4:+71791028 None:intergenic
GGAGCAGGTGGGTGTAATGG+AGG 0.467004 4:+71791013 None:intergenic
GGGTGTAATGGAGGGTGAGT+TGG 0.472310 4:+71791022 None:intergenic
CCAACCGTGTAGAGAATAAA+GGG 0.474781 4:+71788587 None:intergenic
AATGGTAAGGAGGGTGTAGA+GGG 0.479744 4:+71791212 None:intergenic
GTTGGTGGTTTAGCAGGTAC+GGG 0.482104 4:+71791184 None:intergenic
GGAACAACAGGGGTGTGAAC+AGG 0.484015 4:+71791073 None:intergenic
TGGTGGTGGCCGTGAGTTGG+TGG 0.495728 4:+71791169 None:intergenic
GGGGTGTAGGATGCAATGGT+GGG 0.495833 4:+71790984 None:intergenic
TGAACCGGTGACTTGGTTGG+TGG 0.499429 4:+71791319 None:intergenic
CGAGAAGCCATTTGTGGCGA+AGG 0.502568 4:-71788615 MsG0480022378.01.T01:CDS
CAGAGGTTGGTGAGTGAATG+TGG 0.505307 4:+71791260 None:intergenic
GGTGAGGGGCGTTAGCCGGT+GGG 0.507227 4:+71791296 None:intergenic
GAATGTGGTGGTGGTGATGG+TGG 0.512130 4:+71791275 None:intergenic
TAGGCCCGAGAAGCCATTTG+TGG 0.515068 4:-71788621 MsG0480022378.01.T01:CDS
AGGAGAAGGAGTAGGAGCAG+AGG 0.515978 4:+71791243 None:intergenic
TGGACTGGGGAAGGAGCAGG+AGG 0.517336 4:+71791133 None:intergenic
GAAGGAGTAGGAGCAGAGGT+TGG 0.519220 4:+71791247 None:intergenic
GAACAGCTATAAAGCTTCTA+GGG 0.519875 4:+71790960 None:intergenic
GAATGGTAAGGAGGGTGTAG+AGG 0.521002 4:+71791211 None:intergenic
TTGGTGAGTGAATGTGGTGG+TGG 0.526470 4:+71791266 None:intergenic
GTAAAAGTAGCAATATTGCA+AGG 0.527067 4:+71791431 None:intergenic
GACTTGGTTGGTGGGTGAAG+TGG 0.529058 4:+71791328 None:intergenic
GAACCGGTGACTTGGTTGGT+GGG 0.532249 4:+71791320 None:intergenic
TGGTGGTGGTGGCCGTGAGT+TGG 0.535050 4:+71791166 None:intergenic
GTGGGTGTGCTGGAGCAGGT+GGG 0.537085 4:+71791002 None:intergenic
TGGTGAGGGGCGTTAGCCGG+TGG 0.537298 4:+71791295 None:intergenic
AGAGGGGTGTGAATAGGAGA+AGG 0.538140 4:+71791229 None:intergenic
ACAACAGGGGTGTGAACAGG+TGG 0.540027 4:+71791076 None:intergenic
AAGCTTCTAGGGAGGGGTGT+AGG 0.543464 4:+71790971 None:intergenic
GGGTGAACCGGTGACTTGGT+TGG 0.547932 4:+71791316 None:intergenic
GTGGTGGTGATGGTGGTGAG+GGG 0.548870 4:+71791282 None:intergenic
GAGGGTGAGTTGGAACAGGA+GGG 0.549639 4:+71791032 None:intergenic
ACAGGTGTGTGGACTGGGGA+AGG 0.551806 4:+71791124 None:intergenic
GAGCTGGTGTTGTGTGAGGA+GGG 0.558920 4:+71791350 None:intergenic
GTCAAATCTTGCAAGTATGC+TGG 0.559072 4:-71790923 MsG0480022378.01.T01:CDS
GGAGGGTGAGTTGGAACAGG+AGG 0.559242 4:+71791031 None:intergenic
CGGTGGGTGAACCGGTGACT+TGG 0.560182 4:+71791312 None:intergenic
GGAACAGGAGGGTGTAATGG+GGG 0.562210 4:+71791043 None:intergenic
GCTATAAAGCTTCTAGGGAG+GGG 0.564039 4:+71790965 None:intergenic
CAAGTCACCGGTTCACCCAC+CGG 0.566063 4:-71791311 MsG0480022378.01.T01:CDS
TGGAACAGGAGGGTGTAATG+GGG 0.566240 4:+71791042 None:intergenic
CTCGGGCCTAAGACCAGCAC+CGG 0.566604 4:+71788634 None:intergenic
CAGGAGGGTGAGGATGATGG+TGG 0.571819 4:+71791149 None:intergenic
AGCTATAAAGCTTCTAGGGA+GGG 0.575095 4:+71790964 None:intergenic
GGGAGGGGTGTAGGATGCAA+TGG 0.575724 4:+71790980 None:intergenic
AAAATAACCGTTCTTATCAG+TGG 0.576999 4:+71788766 None:intergenic
TCACCCACCAACCAAGTCAC+CGG 0.586790 4:-71791323 MsG0480022378.01.T01:CDS
GGAGCTGGTGTTGTGTGAGG+AGG 0.590088 4:+71791349 None:intergenic
TAAAAGTAGCAATATTGCAA+GGG 0.590364 4:+71791432 None:intergenic
AGTGGAGCTGGTGTTGTGTG+AGG 0.593333 4:+71791346 None:intergenic
TTGGTGGTTTAGCAGGTACG+GGG 0.596856 4:+71791185 None:intergenic
GTGTGAATAGGAGAAGGAGT+AGG 0.597611 4:+71791235 None:intergenic
GGGGATGAGTTGGAACAACA+GGG 0.598634 4:+71791062 None:intergenic
GAGCAGGTGGGTGTAATGGA+GGG 0.598759 4:+71791014 None:intergenic
TCTTCCCTTTATTCTCTACA+CGG 0.602477 4:-71788591 MsG0480022378.01.T01:CDS
CACCGGTAAGACCACCATGA+AGG 0.605543 4:+71788651 None:intergenic
CAACAACACAAAGTACAAGT+TGG 0.607796 4:-71788804 MsG0480022378.01.T01:CDS
ATGGTAAGGAGGGTGTAGAG+GGG 0.618924 4:+71791213 None:intergenic
AGACCACCATGAAGGTTCGA+AGG 0.625392 4:+71788659 None:intergenic
GAGAAGCCATTTGTGGCGAA+GGG 0.631406 4:-71788614 MsG0480022378.01.T01:CDS
GTGCTGGAGCAACAGGTGTG+TGG 0.635755 4:+71791113 None:intergenic
CAGCTATAAAGCTTCTAGGG+AGG 0.636143 4:+71790963 None:intergenic
CAACAGGGGTGTGAACAGGT+GGG 0.648196 4:+71791077 None:intergenic
ACCCAGACCACTGATAAGAA+CGG 0.652681 4:-71788773 MsG0480022378.01.T01:CDS
CCTGCTAAACCACCAACTCA+CGG 0.657475 4:-71791178 MsG0480022378.01.T01:CDS
CATTTGGGCTCAAATGCAAG+AGG 0.670426 4:+71788563 None:intergenic
GGACTGGGGAAGGAGCAGGA+GGG 0.674543 4:+71791134 None:intergenic
TGGTGGTTTAGCAGGTACGG+GGG 0.676103 4:+71791186 None:intergenic
GTTGCATTGAAGCTTCACAA+CGG 0.689892 4:+71788823 None:intergenic
AGGTTGGTGAGTGAATGTGG+TGG 0.693449 4:+71791263 None:intergenic
AGCAACAGGTGTGTGGACTG+GGG 0.697477 4:+71791120 None:intergenic
GGGATGAGTTGGAACAACAG+GGG 0.726853 4:+71791063 None:intergenic
AAGCCTTCGAACCTTCATGG+TGG 0.750456 4:-71788662 MsG0480022378.01.T01:CDS
TGTGTGAGGAGGGTAAGTTG+GGG 0.779039 4:+71791360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAAAAAATATATTTAC+AGG + Chr4:71790420-71790439 None:intergenic 10.0%
!! ATCAAAAAAATATATTTACA+GGG + Chr4:71790419-71790438 None:intergenic 10.0%
!!! AAAAAATAGAGTATATTTTA+AGG - Chr4:71790817-71790836 MsG0480022378.01.T01:intron 10.0%
!!! AAATATAAAAAATTTGGTTT+TGG - Chr4:71790451-71790470 MsG0480022378.01.T01:intron 10.0%
!!! AATCAAAAAAACATTTTAAT+AGG - Chr4:71790678-71790697 MsG0480022378.01.T01:intron 10.0%
!!! ATCAAAAAAACATTTTAATA+GGG - Chr4:71790679-71790698 MsG0480022378.01.T01:intron 10.0%
!!! TTAAGTTATTTTAAATCATT+AGG + Chr4:71790869-71790888 None:intergenic 10.0%
!! AAATCATTTCATATTGAAAT+TGG + Chr4:71790596-71790615 None:intergenic 15.0%
!! ATATTAGATGAACAAAAAAA+TGG + Chr4:71789574-71789593 None:intergenic 15.0%
!! TATTAGATGAACAAAAAAAT+GGG + Chr4:71789573-71789592 None:intergenic 15.0%
!! TATTTAATAAATGATGTATG+TGG - Chr4:71790227-71790246 MsG0480022378.01.T01:intron 15.0%
!! TTTCAAAATACATAAAATGA+TGG + Chr4:71791138-71791157 None:intergenic 15.0%
!!! AAATATAGAATATTTGGTTT+TGG + Chr4:71790647-71790666 None:intergenic 15.0%
!!! ACCAAATTTTTTATATTTGT+AGG + Chr4:71790449-71790468 None:intergenic 15.0%
!!! ATAATAGTACATTATTTTGT+TGG - Chr4:71791055-71791074 MsG0480022378.01.T01:CDS 15.0%
!!! ATGTTGTGAAATTATTTTTT+AGG - Chr4:71789947-71789966 MsG0480022378.01.T01:intron 15.0%
!!! CCAAATTTTTTATATTTGTA+GGG + Chr4:71790448-71790467 None:intergenic 15.0%
!!! TAAGTAAAAATCTACTTTTT+AGG + Chr4:71790291-71790310 None:intergenic 15.0%
!!! TAATAGTACATTATTTTGTT+GGG - Chr4:71791056-71791075 MsG0480022378.01.T01:CDS 15.0%
!! AAGATTAAAACAAAATACCA+AGG - Chr4:71790620-71790639 MsG0480022378.01.T01:intron 20.0%
!! ACCAAAATGTCATATATTTA+CGG + Chr4:71790390-71790409 None:intergenic 20.0%
!! AGGACTAAAATGAATATTAT+AGG - Chr4:71790568-71790587 MsG0480022378.01.T01:intron 20.0%
!! CAAATATTCTACATATTACT+AGG + Chr4:71790529-71790548 None:intergenic 20.0%
!! CCCTACAAATATAAAAAATT+TGG - Chr4:71790445-71790464 MsG0480022378.01.T01:intron 20.0%
!! CTTTCAATAAATAATGTATG+TGG + Chr4:71790266-71790285 None:intergenic 20.0%
!! GGACTAAAATGAATATTATA+GGG - Chr4:71790569-71790588 MsG0480022378.01.T01:intron 20.0%
!! TAAACTTTGGATTTGAAAAA+GGG + Chr4:71789697-71789716 None:intergenic 20.0%
!! TAATCATTGTTTGCAATTAA+GGG - Chr4:71790923-71790942 MsG0480022378.01.T01:CDS 20.0%
!! TCCAAAGTTTAGAAAAATAT+TGG - Chr4:71789706-71789725 MsG0480022378.01.T01:intron 20.0%
!! TGAAATTGAAATAGAGTTAT+GGG - Chr4:71790778-71790797 MsG0480022378.01.T01:intron 20.0%
!! TTAATCATTGTTTGCAATTA+AGG - Chr4:71790922-71790941 MsG0480022378.01.T01:CDS 20.0%
!! TTGAAATTGAAATAGAGTTA+TGG - Chr4:71790777-71790796 MsG0480022378.01.T01:intron 20.0%
!! TTGAATTGAACTATGAATAT+TGG - Chr4:71789379-71789398 MsG0480022378.01.T01:intron 20.0%
!!! AAAGTGAGTATTTTTCTATT+CGG + Chr4:71790095-71790114 None:intergenic 20.0%
!!! AAATTGATTCATATTGGATT+TGG - Chr4:71790502-71790521 MsG0480022378.01.T01:intron 20.0%
!!! ACCAATATTTTTCTAAACTT+TGG + Chr4:71789710-71789729 None:intergenic 20.0%
!!! CAATATGAATCAATTTTACA+AGG + Chr4:71790498-71790517 None:intergenic 20.0%
!!! CATTTTTTTTGGCTTAAATA+TGG + Chr4:71790743-71790762 None:intergenic 20.0%
!!! CTTGTAAAATTGATTCATAT+TGG - Chr4:71790496-71790515 MsG0480022378.01.T01:intron 20.0%
!!! GTATTTTGAAATTGAATTGT+AGG - Chr4:71791147-71791166 MsG0480022378.01.T01:CDS 20.0%
!!! TTTTATTTCTTTACCATTCT+TGG + Chr4:71790983-71791002 None:intergenic 20.0%
!!! TTTTTACTTATAATAGTGAC+CGG - Chr4:71790301-71790320 MsG0480022378.01.T01:intron 20.0%
! AACAATGATTAAAGTTTCTC+CGG + Chr4:71790914-71790933 None:intergenic 25.0%
! ACCAAATATTCTATATTTGC+AGG - Chr4:71790649-71790668 MsG0480022378.01.T01:intron 25.0%
! AGGACTAAAACAAAATATCA+AGG + Chr4:71790478-71790497 None:intergenic 25.0%
! AGTAGTACTACGTTAAAATA+TGG + Chr4:71789984-71790003 None:intergenic 25.0%
! ATCACAGATAAACCTAAAAA+GGG + Chr4:71789512-71789531 None:intergenic 25.0%
! CAAAATGTCATATATTTACG+GGG + Chr4:71790388-71790407 None:intergenic 25.0%
! CCAAAATGTCATATATTTAC+GGG + Chr4:71790389-71790408 None:intergenic 25.0%
! CCAAATATTCTATATTTGCA+GGG - Chr4:71790650-71790669 MsG0480022378.01.T01:intron 25.0%
! CTAAAAAGGGAATAATTGTT+AGG + Chr4:71789499-71789518 None:intergenic 25.0%
! CTAAACTTTGGATTTGAAAA+AGG + Chr4:71789698-71789717 None:intergenic 25.0%
! TAAAAGTAGCAATATTGCAA+GGG + Chr4:71788566-71788585 None:intergenic 25.0%
! TTGTTTATAATAATGACCAG+AGG + Chr4:71790188-71790207 None:intergenic 25.0%
!! CTAACAATTATTCCCTTTTT+AGG - Chr4:71789497-71789516 MsG0480022378.01.T01:intron 25.0%
!!! AACGGTTATTTTTTCATTGA+AGG - Chr4:71791240-71791259 MsG0480022378.01.T01:CDS 25.0%
!!! CAAATCACTAGCATTTTTTT+TGG + Chr4:71790754-71790773 None:intergenic 25.0%
!!! TCATTTTTTTTGACAAGTCA+TGG + Chr4:71789805-71789824 None:intergenic 25.0%
!!! TGCTTACATGTGTTTTTTTA+GGG + Chr4:71789864-71789883 None:intergenic 25.0%
!!! TTGCTTACATGTGTTTTTTT+AGG + Chr4:71789865-71789884 None:intergenic 25.0%
!!! TTTTGGCTTAAATATGGAAA+TGG + Chr4:71790737-71790756 None:intergenic 25.0%
AAAATAACCGTTCTTATCAG+TGG + Chr4:71791232-71791251 None:intergenic 30.0%
AAGACAAGAAAAATAGTGGT+GGG + Chr4:71789651-71789670 None:intergenic 30.0%
AATATACATATGTACACCTC+TGG - Chr4:71790169-71790188 MsG0480022378.01.T01:intron 30.0%
AATATCTCTAGATCGTAGTA+CGG - Chr4:71790046-71790065 MsG0480022378.01.T01:intron 30.0%
ACAATGATTAAAGTTTCTCC+GGG + Chr4:71790913-71790932 None:intergenic 30.0%
AGATTAATGGCTAAGATTCT+AGG - Chr4:71789467-71789486 MsG0480022378.01.T01:intron 30.0%
AGTACTACGTTAAAATATGG+AGG + Chr4:71789981-71790000 None:intergenic 30.0%
CATCACAGATAAACCTAAAA+AGG + Chr4:71789513-71789532 None:intergenic 30.0%
CCCTGCAAATATAGAATATT+TGG + Chr4:71790653-71790672 None:intergenic 30.0%
CGTTGTCATATCAATGTAAA+AGG + Chr4:71791083-71791102 None:intergenic 30.0%
GATGTATGTGGTCTATTTAA+TGG - Chr4:71790239-71790258 MsG0480022378.01.T01:intron 30.0%
GTAAAAGTAGCAATATTGCA+AGG + Chr4:71788567-71788586 None:intergenic 30.0%
TCATAGTTCAATTCAAACAG+TGG + Chr4:71789375-71789394 None:intergenic 30.0%
TTAGGTTTATCTGTGATGTT+GGG - Chr4:71789515-71789534 MsG0480022378.01.T01:intron 30.0%
! CCCGTAAATATATGACATTT+TGG - Chr4:71790386-71790405 MsG0480022378.01.T01:intron 30.0%
! TTTAGGTTTATCTGTGATGT+TGG - Chr4:71789514-71789533 MsG0480022378.01.T01:intron 30.0%
!! CATTTTAGTCCTCATTTTGA+GGG + Chr4:71790560-71790579 None:intergenic 30.0%
!! TCATTTTAGTCCTCATTTTG+AGG + Chr4:71790561-71790580 None:intergenic 30.0%
!! TGAAAAAGGGTATTCAATCT+TGG + Chr4:71789684-71789703 None:intergenic 30.0%
CAACAACACAAAGTACAAGT+TGG - Chr4:71791191-71791210 MsG0480022378.01.T01:CDS 35.0%
CAATGATTAAAGTTTCTCCG+GGG + Chr4:71790912-71790931 None:intergenic 35.0%
CCATTAATCTCGTAGATCTA+CGG + Chr4:71789457-71789476 None:intergenic 35.0%
CGTAAAAAAGTTATGTTCCC+CGG - Chr4:71790892-71790911 MsG0480022378.01.T01:CDS 35.0%
CTAAAACGACAAAGTAGCTT+TGG + Chr4:71791016-71791035 None:intergenic 35.0%
GAACAGCTATAAAGCTTCTA+GGG + Chr4:71789038-71789057 None:intergenic 35.0%
GAAGACAAGAAAAATAGTGG+TGG + Chr4:71789652-71789671 None:intergenic 35.0%
GACGAAGACAAGAAAAATAG+TGG + Chr4:71789655-71789674 None:intergenic 35.0%
TACTTATAATAGTGACCGGA+GGG - Chr4:71790305-71790324 MsG0480022378.01.T01:intron 35.0%
TAGGTTTATCTGTGATGTTG+GGG - Chr4:71789516-71789535 MsG0480022378.01.T01:intron 35.0%
TCTTCCCTTTATTCTCTACA+CGG - Chr4:71791404-71791423 MsG0480022378.01.T01:CDS 35.0%
TGAACAGCTATAAAGCTTCT+AGG + Chr4:71789039-71789058 None:intergenic 35.0%
TTACTTATAATAGTGACCGG+AGG - Chr4:71790304-71790323 MsG0480022378.01.T01:intron 35.0%
! AACTTTTCGAACTCGAGAAT+AGG + Chr4:71790148-71790167 None:intergenic 35.0%
! AGAAGCTTTATAGCTGTTCA+AGG - Chr4:71789039-71789058 MsG0480022378.01.T01:intron 35.0%
! TTCGAAGGCTTTAATCCATT+CGG + Chr4:71791324-71791343 None:intergenic 35.0%
!! AGTGTCGTTTAGCAACAAAA+AGG + Chr4:71791113-71791132 None:intergenic 35.0%
!! GATTTTAGTCCCTCAAAATG+AGG - Chr4:71790548-71790567 MsG0480022378.01.T01:intron 35.0%
!! GGGTATTCAATCTTGGTTTT+TGG + Chr4:71789677-71789696 None:intergenic 35.0%
!!! GAATATTTGGTTTTGGTCCT+TGG + Chr4:71790640-71790659 None:intergenic 35.0%
AAATGGTCCCTGCAAATATC+TGG + Chr4:71790720-71790739 None:intergenic 40.0%
AAGAGAGGAGAATCCAAGAA+TGG - Chr4:71790967-71790986 MsG0480022378.01.T01:CDS 40.0%
AGGTTTATCTGTGATGTTGG+GGG - Chr4:71789517-71789536 MsG0480022378.01.T01:intron 40.0%
CAAAACGCCAGATATTTGCA+GGG - Chr4:71790710-71790729 MsG0480022378.01.T01:intron 40.0%
CCAACCGTGTAGAGAATAAA+GGG + Chr4:71791411-71791430 None:intergenic 40.0%
CCGTAGATCTACGAGATTAA+TGG - Chr4:71789454-71789473 MsG0480022378.01.T01:intron 40.0%
GTCAAATCTTGCAAGTATGC+TGG - Chr4:71789072-71789091 MsG0480022378.01.T01:intron 40.0%
GTGGATTTGTGTGTTAAGAG+AGG - Chr4:71790952-71790971 MsG0480022378.01.T01:CDS 40.0%
GTTGCATTGAAGCTTCACAA+CGG + Chr4:71791175-71791194 None:intergenic 40.0%
TCCAACCGTGTAGAGAATAA+AGG + Chr4:71791412-71791431 None:intergenic 40.0%
TTAAAGCCTTCGAACCTTCA+TGG - Chr4:71791330-71791349 MsG0480022378.01.T01:CDS 40.0%
TTGCAATTAAGGGAACAGTG+TGG - Chr4:71790933-71790952 MsG0480022378.01.T01:CDS 40.0%
TTGGGAGCTACTCAAATTCT+TGG - Chr4:71789108-71789127 MsG0480022378.01.T01:intron 40.0%
! AGCTATAAAGCTTCTAGGGA+GGG + Chr4:71789034-71789053 None:intergenic 40.0%
! GCATAGCTTGTGATGTTCTT+TGG + Chr4:71791267-71791286 None:intergenic 40.0%
!!! GCTGGTGTTGATACTCTTTT+GGG - Chr4:71789090-71789109 MsG0480022378.01.T01:intron 40.0%
!!! TATCAGTGGTCTGGGTTTTT+TGG + Chr4:71791218-71791237 None:intergenic 40.0%
!!! TGCTGGTGTTGATACTCTTT+TGG - Chr4:71789089-71789108 MsG0480022378.01.T01:intron 40.0%
AACCGTTCTTATCAGTGGTC+TGG + Chr4:71791227-71791246 None:intergenic 45.0%
ACCCAGACCACTGATAAGAA+CGG - Chr4:71791222-71791241 MsG0480022378.01.T01:CDS 45.0%
ACCGTTCTTATCAGTGGTCT+GGG + Chr4:71791226-71791245 None:intergenic 45.0%
ATCGTAGTACGGCAGTACTT+TGG - Chr4:71790057-71790076 MsG0480022378.01.T01:intron 45.0%
CATTTGGGCTCAAATGCAAG+AGG + Chr4:71791435-71791454 None:intergenic 45.0%
CCAAAACGCCAGATATTTGC+AGG - Chr4:71790709-71790728 MsG0480022378.01.T01:intron 45.0%
CCCTTTATTCTCTACACGGT+TGG - Chr4:71791408-71791427 MsG0480022378.01.T01:CDS 45.0%
GTGTGAATAGGAGAAGGAGT+AGG + Chr4:71788763-71788782 None:intergenic 45.0%
TCGTAGTACGGCAGTACTTT+GGG - Chr4:71790058-71790077 MsG0480022378.01.T01:intron 45.0%
TTGTGTGAGGAGGGTAAGTT+GGG + Chr4:71788639-71788658 None:intergenic 45.0%
! AACCTTCATGGTGGTCTTAC+CGG - Chr4:71791342-71791361 MsG0480022378.01.T01:CDS 45.0%
! AATGGTAAGGAGGGTGTAGA+GGG + Chr4:71788786-71788805 None:intergenic 45.0%
! CAGCTATAAAGCTTCTAGGG+AGG + Chr4:71789035-71789054 None:intergenic 45.0%
! CCTGCAAATATCTGGCGTTT+TGG + Chr4:71790712-71790731 None:intergenic 45.0%
! GCTATAAAGCTTCTAGGGAG+GGG + Chr4:71789033-71789052 None:intergenic 45.0%
! TTGGAACAGGAGGGTGTAAT+GGG + Chr4:71788957-71788976 None:intergenic 45.0%
!! AGTTGGTGGTTTAGCAGGTA+CGG + Chr4:71788815-71788834 None:intergenic 45.0%
!! GTTTTAGTCAGTGCACCGAA+TGG - Chr4:71791306-71791325 MsG0480022378.01.T01:CDS 45.0%
AAGCCTTCGAACCTTCATGG+TGG - Chr4:71791333-71791352 MsG0480022378.01.T01:CDS 50.0%
AGACCACCATGAAGGTTCGA+AGG + Chr4:71791339-71791358 None:intergenic 50.0%
AGTACGGCAGTACTTTGGGT+AGG - Chr4:71790062-71790081 MsG0480022378.01.T01:intron 50.0%
CACTAGCATAGTACACCCTC+CGG + Chr4:71790323-71790342 None:intergenic 50.0%
CCTGCTAAACCACCAACTCA+CGG - Chr4:71788817-71788836 MsG0480022378.01.T01:CDS 50.0%
CTTCGCCACAAATGGCTTCT+CGG + Chr4:71791382-71791401 None:intergenic 50.0%
GAGAAGCCATTTGTGGCGAA+GGG - Chr4:71791381-71791400 MsG0480022378.01.T01:CDS 50.0%
GTACGGCAGTACTTTGGGTA+GGG - Chr4:71790063-71790082 MsG0480022378.01.T01:intron 50.0%
GTTGTGTGAGGAGGGTAAGT+TGG + Chr4:71788640-71788659 None:intergenic 50.0%
TACGGCAGTACTTTGGGTAG+GGG - Chr4:71790064-71790083 MsG0480022378.01.T01:intron 50.0%
TGTGTGAGGAGGGTAAGTTG+GGG + Chr4:71788638-71788657 None:intergenic 50.0%
TTCGCCACAAATGGCTTCTC+GGG + Chr4:71791381-71791400 None:intergenic 50.0%
TTGGTGAGTGAATGTGGTGG+TGG + Chr4:71788732-71788751 None:intergenic 50.0%
! AATGGAGGGTGAGTTGGAAC+AGG + Chr4:71788970-71788989 None:intergenic 50.0%
! AGAGGGGTGTGAATAGGAGA+AGG + Chr4:71788769-71788788 None:intergenic 50.0%
! ATGGTAAGGAGGGTGTAGAG+GGG + Chr4:71788785-71788804 None:intergenic 50.0%
! GAATGGTAAGGAGGGTGTAG+AGG + Chr4:71788787-71788806 None:intergenic 50.0%
! GGGATGAGTTGGAACAACAG+GGG + Chr4:71788935-71788954 None:intergenic 50.0%
! GGGGATGAGTTGGAACAACA+GGG + Chr4:71788936-71788955 None:intergenic 50.0%
! GTTGGAACAGGAGGGTGTAA+TGG + Chr4:71788958-71788977 None:intergenic 50.0%
! TGGAACAGGAGGGTGTAATG+GGG + Chr4:71788956-71788975 None:intergenic 50.0%
! TTGGTGGTTTAGCAGGTACG+GGG + Chr4:71788813-71788832 None:intergenic 50.0%
!! AGGTTGGTGAGTGAATGTGG+TGG + Chr4:71788735-71788754 None:intergenic 50.0%
!! AGTGAATGTGGTGGTGGTGA+TGG + Chr4:71788726-71788745 None:intergenic 50.0%
!! CAGAGGTTGGTGAGTGAATG+TGG + Chr4:71788738-71788757 None:intergenic 50.0%
!! GTGATGTTGGGGGTACTCTT+GGG - Chr4:71789527-71789546 MsG0480022378.01.T01:intron 50.0%
!! GTTGGTGGTTTAGCAGGTAC+GGG + Chr4:71788814-71788833 None:intergenic 50.0%
!! TGTGATGTTGGGGGTACTCT+TGG - Chr4:71789526-71789545 MsG0480022378.01.T01:intron 50.0%
ACGGGGGTAGAATGGTAAGG+AGG + Chr4:71788796-71788815 None:intergenic 55.0%
AGGAGAAGGAGTAGGAGCAG+AGG + Chr4:71788755-71788774 None:intergenic 55.0%
CACCGGTAAGACCACCATGA+AGG + Chr4:71791347-71791366 None:intergenic 55.0%
CGAGAAGCCATTTGTGGCGA+AGG - Chr4:71791380-71791399 MsG0480022378.01.T01:CDS 55.0%
CGGGGGTAGAATGGTAAGGA+GGG + Chr4:71788795-71788814 None:intergenic 55.0%
GAAGGAGTAGGAGCAGAGGT+TGG + Chr4:71788751-71788770 None:intergenic 55.0%
GAGCAACAGGTGTGTGGACT+GGG + Chr4:71788879-71788898 None:intergenic 55.0%
GGAAGACCCTTCGCCACAAA+TGG + Chr4:71791390-71791409 None:intergenic 55.0%
GGGGTGTAGGATGCAATGGT+GGG + Chr4:71789014-71789033 None:intergenic 55.0%
GGTACGGGGGTAGAATGGTA+AGG + Chr4:71788799-71788818 None:intergenic 55.0%
GTGTGAACAGGTGGGTGTAG+TGG + Chr4:71788913-71788932 None:intergenic 55.0%
TAGCAGGTACGGGGGTAGAA+TGG + Chr4:71788804-71788823 None:intergenic 55.0%
TAGGCCCGAGAAGCCATTTG+TGG - Chr4:71791374-71791393 MsG0480022378.01.T01:CDS 55.0%
TCACCCACCAACCAAGTCAC+CGG - Chr4:71788672-71788691 MsG0480022378.01.T01:CDS 55.0%
TGAACAGGTGGGTGTAGTGG+TGG + Chr4:71788910-71788929 None:intergenic 55.0%
TGGTGGTTTAGCAGGTACGG+GGG + Chr4:71788812-71788831 None:intergenic 55.0%
! AAGCTTCTAGGGAGGGGTGT+AGG + Chr4:71789027-71789046 None:intergenic 55.0%
! ACAACAGGGGTGTGAACAGG+TGG + Chr4:71788922-71788941 None:intergenic 55.0%
! AGCAACAGGTGTGTGGACTG+GGG + Chr4:71788878-71788897 None:intergenic 55.0%
! AGGGGTGTAGGATGCAATGG+TGG + Chr4:71789015-71789034 None:intergenic 55.0%
! CAACAGGGGTGTGAACAGGT+GGG + Chr4:71788921-71788940 None:intergenic 55.0%
! GAGCAGGTGGGTGTAATGGA+GGG + Chr4:71788984-71789003 None:intergenic 55.0%
! GAGGGTGAGTTGGAACAGGA+GGG + Chr4:71788966-71788985 None:intergenic 55.0%
! GGAACAACAGGGGTGTGAAC+AGG + Chr4:71788925-71788944 None:intergenic 55.0%
! GGAACAGGAGGGTGTAATGG+GGG + Chr4:71788955-71788974 None:intergenic 55.0%
! GGGGGATGAGTTGGAACAAC+AGG + Chr4:71788937-71788956 None:intergenic 55.0%
! GGGTGTAATGGAGGGTGAGT+TGG + Chr4:71788976-71788995 None:intergenic 55.0%
! GGGTGTAATGGGGGATGAGT+TGG + Chr4:71788946-71788965 None:intergenic 55.0%
! GGGTGTAGAGGGGTGTGAAT+AGG + Chr4:71788775-71788794 None:intergenic 55.0%
!! AGTGGAGCTGGTGTTGTGTG+AGG + Chr4:71788652-71788671 None:intergenic 55.0%
!! CCGTGAGTTGGTGGTTTAGC+AGG + Chr4:71788820-71788839 None:intergenic 55.0%
!! GAACCGGTGACTTGGTTGGT+GGG + Chr4:71788678-71788697 None:intergenic 55.0%
!! GAATGTGGTGGTGGTGATGG+TGG + Chr4:71788723-71788742 None:intergenic 55.0%
!! GACTTGGTTGGTGGGTGAAG+TGG + Chr4:71788670-71788689 None:intergenic 55.0%
!! GAGCTGGTGTTGTGTGAGGA+GGG + Chr4:71788648-71788667 None:intergenic 55.0%
!! GTCTTACCGGTGCTGGTCTT+AGG - Chr4:71791355-71791374 MsG0480022378.01.T01:CDS 55.0%
!! TGAACCGGTGACTTGGTTGG+TGG + Chr4:71788679-71788698 None:intergenic 55.0%
GAGCAGGAGGGTGAGGATGA+TGG + Chr4:71788852-71788871 None:intergenic 60.0%
GCTGGAGCAGGTGGGTGTAA+TGG + Chr4:71788988-71789007 None:intergenic 60.0%
GGAGCAACAGGTGTGTGGAC+TGG + Chr4:71788880-71788899 None:intergenic 60.0%
GGAGCAGGTGGGTGTAATGG+AGG + Chr4:71788985-71789004 None:intergenic 60.0%
GGTGGATGTGCTGGAGCAAC+AGG + Chr4:71788892-71788911 None:intergenic 60.0%
GTGCTGGAGCAACAGGTGTG+TGG + Chr4:71788885-71788904 None:intergenic 60.0%
! CAGGAGGGTGAGGATGATGG+TGG + Chr4:71788849-71788868 None:intergenic 60.0%
! CATGGTGGTCTTACCGGTGC+TGG - Chr4:71791348-71791367 MsG0480022378.01.T01:CDS 60.0%
! GGAGGGTGAGTTGGAACAGG+AGG + Chr4:71788967-71788986 None:intergenic 60.0%
! GGGAGGGGTGTAGGATGCAA+TGG + Chr4:71789018-71789037 None:intergenic 60.0%
! GTTGGTGGGTGAAGTGGAGC+TGG + Chr4:71788664-71788683 None:intergenic 60.0%
!! AATGGTGGGTGTGCTGGAGC+AGG + Chr4:71789000-71789019 None:intergenic 60.0%
!! ACAGGTGTGTGGACTGGGGA+AGG + Chr4:71788874-71788893 None:intergenic 60.0%
!! CAAGTCACCGGTTCACCCAC+CGG - Chr4:71788684-71788703 MsG0480022378.01.T01:CDS 60.0%
!! GAGGGTGAGGATGATGGTGG+TGG + Chr4:71788846-71788865 None:intergenic 60.0%
!! GGAGCTGGTGTTGTGTGAGG+AGG + Chr4:71788649-71788668 None:intergenic 60.0%
!! GGATGCAATGGTGGGTGTGC+TGG + Chr4:71789006-71789025 None:intergenic 60.0%
!! GGGTGAACCGGTGACTTGGT+TGG + Chr4:71788682-71788701 None:intergenic 60.0%
!! GGGTGTAGTGGTGGATGTGC+TGG + Chr4:71788901-71788920 None:intergenic 60.0%
!! GGTGAGGATGATGGTGGTGG+TGG + Chr4:71788843-71788862 None:intergenic 60.0%
!! GGTGGTGGTGATGGTGGTGA+GGG + Chr4:71788717-71788736 None:intergenic 60.0%
!! GTGGTGGTGATGGTGGTGAG+GGG + Chr4:71788716-71788735 None:intergenic 60.0%
!! TGGTGGTGGTGATGGTGGTG+AGG + Chr4:71788718-71788737 None:intergenic 60.0%
CGGTGGGTGAACCGGTGACT+TGG + Chr4:71788686-71788705 None:intergenic 65.0%
CTCGGGCCTAAGACCAGCAC+CGG + Chr4:71791364-71791383 None:intergenic 65.0%
GCGTTAGCCGGTGGGTGAAC+CGG + Chr4:71788694-71788713 None:intergenic 65.0%
GGACTGGGGAAGGAGCAGGA+GGG + Chr4:71788864-71788883 None:intergenic 65.0%
GTGGGTGTGCTGGAGCAGGT+GGG + Chr4:71788996-71789015 None:intergenic 65.0%
! TGGACTGGGGAAGGAGCAGG+AGG + Chr4:71788865-71788884 None:intergenic 65.0%
!! GTGTGGACTGGGGAAGGAGC+AGG + Chr4:71788868-71788887 None:intergenic 65.0%
!! TGGTGGTGAGGGGCGTTAGC+CGG + Chr4:71788706-71788725 None:intergenic 65.0%
!! TGGTGGTGGCCGTGAGTTGG+TGG + Chr4:71788829-71788848 None:intergenic 65.0%
!! TGGTGGTGGTGGCCGTGAGT+TGG + Chr4:71788832-71788851 None:intergenic 65.0%
GGGGAAGGAGCAGGAGGGTG+AGG + Chr4:71788859-71788878 None:intergenic 70.0%
GGTGGGTGTGCTGGAGCAGG+TGG + Chr4:71788997-71789016 None:intergenic 70.0%
!! GGTGAGGGGCGTTAGCCGGT+GGG + Chr4:71788702-71788721 None:intergenic 70.0%
!! TGGTGAGGGGCGTTAGCCGG+TGG + Chr4:71788703-71788722 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 71788553 71791464 71788553 ID=MsG0480022378.01;Name=MsG0480022378.01
Chr4 mRNA 71788553 71791464 71788553 ID=MsG0480022378.01.T01;Parent=MsG0480022378.01;Name=MsG0480022378.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|290
Chr4 exon 71790888 71791464 71790888 ID=MsG0480022378.01.T01:exon:4908;Parent=MsG0480022378.01.T01
Chr4 exon 71788553 71788848 71788553 ID=MsG0480022378.01.T01:exon:4907;Parent=MsG0480022378.01.T01
Chr4 CDS 71790888 71791464 71790888 ID=MsG0480022378.01.T01:cds;Parent=MsG0480022378.01.T01
Chr4 CDS 71788553 71788848 71788553 ID=MsG0480022378.01.T01:cds;Parent=MsG0480022378.01.T01
Gene Sequence

>MsG0480022378.01.T01

ATGGCTAAAACCCTTGCAATATTGCTACTTTTACTTCAACTCACTTCTTTCACTGCATTTTCTGAAGAGCTTGAAACTCTTGCCCCAACTTACCCTCCTCACACAACACCAGCTCCACTTCACCCACCAACCAAGTCACCGGTTCACCCACCGGCTAACGCCCCTCACCACCATCACCACCACCACATTCACTCACCAACCTCTGCTCCTACTCCTTCTCCTATTCACACCCCTCTACACCCTCCTTACCATTCTACCCCCGTACCTGCTAAACCACCAACTCACGGCCACCACCACCATCATCCTCACCCTCCTGCTCCTTCCCCAGTCCACACACCTGTTGCTCCAGCACATCCACCACTACACCCACCTGTTCACACCCCTGTTGTTCCAACTCATCCCCCATTACACCCTCCTGTTCCAACTCACCCTCCATTACACCCACCTGCTCCAGCACACCCACCATTGCATCCTACACCCCTCCCTAGAAGCTTTATAGCTGTTCAAGGTGTTGTTTATGTCAAATCTTGCAAGTATGCTGGTGTTGATACTCTTTTGGGAGCTACTCAAATTCTTGGAGCCGTTGTGAAGCTTCAATGCAACAACACAAAGTACAAGTTGGTCCAAAAAACCCAGACCACTGATAAGAACGGTTATTTTTTCATTGAAGGACCAAAGAACATCACAAGCTATGCAGCTCATAAGTGCAACATTGTTTTAGTCAGTGCACCGAATGGATTAAAGCCTTCGAACCTTCATGGTGGTCTTACCGGTGCTGGTCTTAGGCCCGAGAAGCCATTTGTGGCGAAGGGTCTTCCCTTTATTCTCTACACGGTTGGACCTCTTGCATTTGAGCCCAAATGTCCCCGTTAA

Protein sequence

>MsG0480022378.01.T01

MAKTLAILLLLLQLTSFTAFSEELETLAPTYPPHTTPAPLHPPTKSPVHPPANAPHHHHHHHIHSPTSAPTPSPIHTPLHPPYHSTPVPAKPPTHGHHHHHPHPPAPSPVHTPVAPAHPPLHPPVHTPVVPTHPPLHPPVPTHPPLHPPAPAHPPLHPTPLPRSFIAVQGVVYVKSCKYAGVDTLLGATQILGAVVKLQCNNTKYKLVQKTQTTDKNGYFFIEGPKNITSYAAHKCNIVLVSAPNGLKPSNLHGGLTGAGLRPEKPFVAKGLPFILYTVGPLAFEPKCPR*