AlfalfaGEDB | MsG0780038647.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038647.01

KEGG: K01728
GO: -
PFAM: PF00544

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038647.01.T01	XP_003622996.1	88.406	69	8	0	1	69	1	69	1.39E-31	124
MsG0780038647.01.T02	XP_003622996.1	82.174	230	13	4	1	204	98	325	8.25E-125	370
MsG0780038647.01.T03	PNY11109.1	77.011	87	14	1	20	106	298	378	1.07E-37	141

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038647.01.T02	Q9M8Z8	72.174	230	36	4	1	204	70	297	2.86E-111	327
MsG0780038647.01.T03	Q944R1	68.493	73	23	0	34	106	398	470	3.24E-28	109

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038647.01.T01	G7L2D3	88.406	69	8	0	1	69	1	69	6.63e-32	124
MsG0780038647.01.T02	G7L2D3	82.174	230	13	4	1	204	98	325	3.94e-125	370
MsG0780038647.01.T03	A0A2K3P757	77.011	87	14	1	20	106	298	378	5.12e-38	141

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048738.01	MsG0780038647.01	0.809654	1.700859e-50	1.004412e-47
MsG0080048797.01	MsG0780038647.01	0.818036	2.416459e-52	1.788830e-49
MsG0080049008.01	MsG0780038647.01	0.847162	1.377040e-59	2.426125e-56
MsG0180000028.01	MsG0780038647.01	0.856350	3.414316e-62	8.125982e-59
MsG0180000466.01	MsG0780038647.01	0.801277	9.715698e-49	4.621126e-46
MsG0180000984.01	MsG0780038647.01	0.842936	1.906853e-58	2.936238e-55
MsG0180001588.01	MsG0780038647.01	0.822860	1.889894e-53	1.600957e-50
MsG0180001719.01	MsG0780038647.01	0.815866	7.422468e-52	5.177623e-49
MsG0180002135.01	MsG0780038647.01	0.824907	6.258623e-54	5.619436e-51
MsG0180002404.01	MsG0780038647.01	0.848376	6.374190e-60	1.167383e-56

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038647.01.T01	MTR_7g059290	88.406	69	8	0	1	69	1	69	1.68e-35	124
MsG0780038647.01.T02	MTR_7g059290	82.174	230	13	4	1	204	98	325	9.99e-129	370
MsG0780038647.01.T02	MTR_1g047370	72.174	230	36	4	1	204	104	331	3.74e-114	333
MsG0780038647.01.T02	MTR_3g075320	61.135	229	63	2	1	204	60	287	1.84e-99	290
MsG0780038647.01.T02	MTR_3g075320	61.135	229	63	2	1	204	60	287	7.24e-98	290
MsG0780038647.01.T02	MTR_3g086310	61.572	229	61	3	1	204	58	284	3.13e-97	288
MsG0780038647.01.T02	MTR_4g104320	62.609	230	58	3	1	204	60	287	3.94e-97	288
MsG0780038647.01.T02	MTR_6g021950	58.952	229	68	3	1	204	58	285	2.63e-92	276
MsG0780038647.01.T02	MTR_3g086320	58.952	229	67	3	1	204	60	286	8.97e-88	264
MsG0780038647.01.T02	MTR_1g062930	55.128	234	69	3	1	204	73	300	6.34e-86	261

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038647.01.T02	AT3G07010	72.174	230	36	4	1	204	37	264	2.03e-112	326
MsG0780038647.01.T02	AT3G07010	72.174	230	36	4	1	204	70	297	2.92e-112	327
MsG0780038647.01.T02	AT4G13210	68.559	229	46	2	1	204	55	282	3.98e-112	326
MsG0780038647.01.T02	AT4G13210	68.559	229	46	2	1	204	92	319	4.14e-112	327
MsG0780038647.01.T02	AT5G48900	71.304	230	38	4	1	204	71	298	7.45e-112	326
MsG0780038647.01.T02	AT1G04680	71.304	230	38	4	1	204	83	310	2.37e-111	325
MsG0780038647.01.T02	AT3G24670	72.174	230	36	4	1	204	94	321	4.39e-111	325
MsG0780038647.01.T02	AT4G13710	70.435	230	40	4	1	204	124	351	1.18e-110	325
MsG0780038647.01.T02	AT4G13710	70.435	230	40	4	1	204	105	332	1.75e-110	323
MsG0780038647.01.T02	AT5G63180	64.348	230	54	3	1	204	84	311	3.59e-101	299

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Find 113 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATGACTATACACACT+GGG	0.644998	7:+50424498	MsG0780038647.01.T01:three_prime_UTR
AACAGTTTCAAGACCATAGA+TGG	0.441561	7:+50423588	MsG0780038647.01.T01:three_prime_UTR
AAGAAGCGTGATAGCGAGAA+TGG	0.510985	7:-50419877	None:intergenic
AATATGACTGGAACCAAAGA+TGG	0.477110	7:-50423785	None:intergenic
AATATTGCAGATGTAGACAC+GGG	0.684120	7:+50424461	MsG0780038647.01.T01:intron
AATCAGCCAACCGCTTTCTG+CGG	0.594304	7:-50423374	None:intergenic
AATCATGGATATGGACACCA+TGG	0.604716	7:-50423682	None:intergenic
AATCCAGAGGATTGCTTCCA+TGG	0.427297	7:+50420452	MsG0780038647.01.T01:CDS
AATGATACAGGTTATGCTAT+TGG	0.286003	7:+50424065	MsG0780038647.01.T01:intron
AATGCTATCGGTGGCCGTGA+CGG	0.552465	7:+50423417	MsG0780038647.01.T01:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGCTCCATTTAGCAAA+AGG	-	Chr7:50424777-50424796	None:intergenic	30.0%
AAACAATGACTATACACACT+GGG	+	Chr7:50424498-50424517	MsG0780038647.01.T01:three_prime_UTR	30.0%
AAATTACCCGTTTGTCTTAA+AGG	-	Chr7:50423097-50423116	None:intergenic	30.0%
AATGATACAGGTTATGCTAT+TGG	+	Chr7:50424065-50424084	MsG0780038647.01.T01:intron	30.0%
ACCAACTAAAGAAGATGATT+TGG	-	Chr7:50424857-50424876	None:intergenic	30.0%
ACCACTATACAAGAAATGAA+AGG	-	Chr7:50422004-50422023	None:intergenic	30.0%
AGCTGGCAAATAAAATATTC+TGG	-	Chr7:50421744-50421763	None:intergenic	30.0%
AGGACTGAATTAAAACTTGA+AGG	-	Chr7:50423077-50423096	None:intergenic	30.0%
ATAGAATGATACGGTGTATA+CGG	-	Chr7:50422945-50422964	None:intergenic	30.0%
ATCAACAACCAAATGAGTAA+AGG	+	Chr7:50424941-50424960	MsG0780038647.01.T01:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	50419843	50424976	50419843	ID=MsG0780038647.01;Name=MsG0780038647.01
Chr7	mRNA	50419843	50424976	50419843	ID=MsG0780038647.01.T01;Parent=MsG0780038647.01;Name=MsG0780038647.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|1\|0.85\|1\|0.33\|0.28\|7\|1157\|73
Chr7	exon	50419843	50419937	50419843	ID=MsG0780038647.01.T01:exon:6856;Parent=MsG0780038647.01.T01
Chr7	exon	50420089	50420151	50420089	ID=MsG0780038647.01.T01:exon:6857;Parent=MsG0780038647.01.T01
Chr7	exon	50420415	50420481	50420415	ID=MsG0780038647.01.T01:exon:6858;Parent=MsG0780038647.01.T01
Chr7	exon	50423272	50423915	50423272	ID=MsG0780038647.01.T01:exon:6859;Parent=MsG0780038647.01.T01
Chr7	exon	50424075	50424178	50424075	ID=MsG0780038647.01.T01:exon:6860;Parent=MsG0780038647.01.T01
Chr7	exon	50424471	50424608	50424471	ID=MsG0780038647.01.T01:exon:6861;Parent=MsG0780038647.01.T01
Chr7	CDS	50419843	50419937	50419843	ID=MsG0780038647.01.T01:cds;Parent=MsG0780038647.01.T01
Chr7	CDS	50420089	50420151	50420089	ID=MsG0780038647.01.T01:cds;Parent=MsG0780038647.01.T01
Chr7	CDS	50420415	50420478	50420415	ID=MsG0780038647.01.T01:cds;Parent=MsG0780038647.01.T01
Chr7	three_prime_UTR	50420479	50420481	50420479	ID=MsG0780038647.01.T01:three_prime_utr;Parent=MsG0780038647.01.T01
Chr7	three_prime_UTR	50423272	50423915	50423272	ID=MsG0780038647.01.T01:three_prime_utr;Parent=MsG0780038647.01.T01
Chr7	three_prime_UTR	50424075	50424178	50424075	ID=MsG0780038647.01.T01:three_prime_utr;Parent=MsG0780038647.01.T01
Chr7	three_prime_UTR	50424471	50424608	50424471	ID=MsG0780038647.01.T01:three_prime_utr;Parent=MsG0780038647.01.T01
Chr7	three_prime_UTR	50424709	50424976	50424709	ID=MsG0780038647.01.T01:three_prime_utr;Parent=MsG0780038647.01.T01
Chr7	mRNA	50423336	50424182	50423336	ID=MsG0780038647.01.T02;Parent=MsG0780038647.01;Name=MsG0780038647.01.T02;_AED=0.48;_eAED=0.48;_QI=0\|0.5\|0\|1\|1\|1\|3\|0\|204
Chr7	exon	50423336	50423727	50423336	ID=MsG0780038647.01.T02:exon:6863;Parent=MsG0780038647.01.T02
Chr7	exon	50423801	50423915	50423801	ID=MsG0780038647.01.T02:exon:6864;Parent=MsG0780038647.01.T02
Chr7	exon	50424075	50424182	50424075	ID=MsG0780038647.01.T02:exon:6865;Parent=MsG0780038647.01.T02
Chr7	CDS	50423336	50423727	50423336	ID=MsG0780038647.01.T02:cds;Parent=MsG0780038647.01.T02
Chr7	CDS	50423801	50423915	50423801	ID=MsG0780038647.01.T02:cds;Parent=MsG0780038647.01.T02
Chr7	CDS	50424075	50424182	50424075	ID=MsG0780038647.01.T02:cds;Parent=MsG0780038647.01.T02
Chr7	mRNA	50424527	50424976	50424527	ID=MsG0780038647.01.T03;Parent=MsG0780038647.01;Name=MsG0780038647.01.T03;_AED=0.49;_eAED=0.63;_QI=0\|0\|0.5\|1\|0\|0.5\|2\|16\|116
Chr7	exon	50424527	50424625	50424527	ID=MsG0780038647.01.T03:exon:6866;Parent=MsG0780038647.01.T03
Chr7	CDS	50424527	50424625	50424527	ID=MsG0780038647.01.T03:cds;Parent=MsG0780038647.01.T03
Chr7	CDS	50424709	50424960	50424709	ID=MsG0780038647.01.T03:cds;Parent=MsG0780038647.01.T03
Chr7	three_prime_UTR	50424961	50424976	50424961	ID=MsG0780038647.01.T03:three_prime_utr;Parent=MsG0780038647.01.T03

Gene Sequence

>MsG0780038647.01.T03

ATGCTATTGGAGGCAGTGCTGAACCCACAATTACAGCCAAGGCAACAGATACCTTGCCCCTCAGAACCCTTTTGCCAAAGAGGTAACATTCTTACGAGTGTGACCAAGAGGGTGGATACAGGGTCCGGAGTATGGAAGGGTTGGAATTGGAGGTCCGAGGGAGACCTTTTGCTAAATGGAGCTTTTTTCACTCCATCAGGAAGAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTAGGGGCCAAATCATCTTCTTTAGTTGGTACTTTAACTGCAGGTGCTGGTGTTATTAAATGTCGCCGGGGGGTGGCATGTTTAATACAAAAGTATCAACAACCAAATGAGTAA

>MsG0780038647.01.T01

ATGGAGTTACGGTTTTCATCACAGTTCGTTTTCACCATTCTCGCTATCACGCTTCTTTTTGCTTTCACCAATGCTATTGATCATAACGACTCAAGTGTTGTGAATGGAGAAGAGAAGTTGAAGATGCAGAGCTTGAATAATTCATCAATGGCGGAAAGCTTAAGTAATGGTGCTATCAACGAGCATGCAGTTGATAATCCAGAGGATTGCTTCCATGGTTGA

>MsG0780038647.01.T02

ATGGATGACTGCTGGCGCTGTGACAAGCTTTGGTACCGCCGCAGAAAGCGGTTGGCTGATTGTGCCATTGGTTTTGGTCGCAATGCTATCGGTGGCCGTGACGGAAGGTACTACGTTGTGAATAACCCAAGAGACGACGACCCCGTGAACCCAAGACCTGGCACTCTCCGTCACGCCGTCATTCAAGATAGGCCATTGTGGATTGTGTTCAAGAGAGACATGGTGATCACCCTGAAGCAAGAATTGATCATGAACAGTTTCAAGACCATAGATGGTCGTGGTGCCAATGTTCATATTGCCTTTGGAGCAGCATGCATTACTATTCAATTTATCACCATGTCATCATCCATGGTGTCCATATCCATGATTGTAAGCCGACTGGGAATGCTATGTCATATTTGGATTGACCACAACTCTCTGTCTAATTGCGCTGATGGTCTTGTTGATGCTATTATGGGATCCACCGCCATTACCGTTTCCAATAACTACTTCACCCACCACAACGAGGTTATGCTATTGGGTCACAGTGACTCATATGTACGTGACAAGCAGATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTATCCAAAGGATGCCAAGGTAA

Protein sequence

>MsG0780038647.01.T03

MLLEAVLNPQLQPRQQIPCPSEPFCQRGNILTSVTKRVDTGSGVWKGWNWRSEGDLLLNGAFFTPSGRGAAASYARASSLGAKSSSLVGTLTAGAGVIKCRRGVACLIQKYQQPNE*

>MsG0780038647.01.T01

MELRFSSQFVFTILAITLLFAFTNAIDHNDSSVVNGEEKLKMQSLNNSSMAESLSNGAINEHAVDNPEDCFHG*

>MsG0780038647.01.T02

MDDCWRCDKLWYRRRKRLADCAIGFGRNAIGGRDGRYYVVNNPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGAACITIQFITMSSSMVSISMIVSRLGMLCHIWIDHNSLSNCADGLVDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPR*