AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380018070.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018070.01.T01 MTR_3g118390 95.427 328 9 3 1 325 58 382 0.0 607
MsG0380018070.01.T01 MTR_8g074330 66.221 299 90 3 21 309 22 319 1.31e-146 416
MsG0380018070.01.T01 MTR_8g074350 62.857 315 107 3 4 309 6 319 6.25e-146 414
MsG0380018070.01.T01 MTR_8g074335 62.914 302 88 2 19 309 20 308 9.11e-135 385
MsG0380018070.01.T01 MTR_7g110780 55.785 242 105 2 70 309 36 277 1.69e-98 292
MsG0380018070.01.T01 MTR_2g099470 36.893 309 143 10 5 303 16 282 7.51e-57 186
MsG0380018070.01.T01 MTR_1g105535 38.800 250 142 5 79 317 72 321 3.89e-55 182
MsG0380018070.01.T01 MTR_7g021640 37.600 250 145 5 79 317 69 318 3.98e-55 182
MsG0380018070.01.T01 MTR_2g034680 34.441 331 183 12 2 317 4 315 9.97e-53 176
MsG0380018070.01.T01 MTR_2g099465 35.714 238 116 6 69 303 51 254 2.30e-45 155
MsG0380018070.01.T01 MTR_7g115220 53.704 54 25 0 7 60 4 57 4.22e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018070.01.T01 AT3G12500 69.967 303 86 3 21 318 33 335 5.50e-158 445
MsG0380018070.01.T01 AT4G01700 59.504 242 96 2 70 309 38 279 9.17e-108 316
MsG0380018070.01.T01 AT1G02360 57.613 243 101 2 70 310 30 272 2.58e-104 306
MsG0380018070.01.T01 AT1G02360 57.613 243 101 2 70 310 82 324 4.46e-104 308
MsG0380018070.01.T01 AT1G02360 57.613 243 101 2 70 310 76 318 5.66e-104 307
MsG0380018070.01.T01 AT2G43590 41.522 289 122 10 20 303 18 264 3.56e-65 206
MsG0380018070.01.T01 AT2G43610 37.421 318 140 8 1 303 8 281 3.36e-61 197
MsG0380018070.01.T01 AT2G43620 36.250 320 143 9 1 303 8 283 2.95e-58 189
MsG0380018070.01.T01 AT2G43580 37.545 277 127 8 33 303 29 265 4.17e-58 188
MsG0380018070.01.T01 AT3G54420 36.877 301 148 8 8 303 10 273 9.75e-58 187
MsG0380018070.01.T01 AT2G43570 38.387 310 139 10 4 303 10 277 1.92e-57 187
MsG0380018070.01.T01 AT1G05850 36.327 245 145 6 79 312 69 313 3.74e-52 175
MsG0380018070.01.T01 AT1G05850 36.327 245 145 6 79 312 69 313 3.74e-52 175
MsG0380018070.01.T01 AT3G16920 33.677 291 166 10 32 309 67 343 6.92e-50 170
MsG0380018070.01.T01 AT3G16920 36.214 243 143 6 79 309 77 319 7.39e-50 169
MsG0380018070.01.T01 AT1G56680 37.193 285 125 12 33 303 36 280 1.09e-43 151
MsG0380018070.01.T01 AT1G56680 37.193 285 125 12 33 303 59 303 1.18e-43 152
MsG0380018070.01.T01 AT2G43600 31.761 318 157 14 1 303 1 273 6.77e-41 144
MsG0380018070.01.T01 AT2G43600 31.761 318 157 13 1 303 22 294 1.38e-40 144
MsG0380018070.01.T01 AT3G47540 29.555 247 117 9 61 303 21 214 1.63e-26 104
MsG0380018070.01.T01 AT3G47540 29.289 239 112 10 61 295 21 206 3.86e-23 97.4

Find 121 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGAATTCCCATGTGCTTC+TGG 0.217154 3:+103988980 MsG0380018070.01.T01:CDS
TCAAGACCGCTCTATGGTTT+TGG 0.239800 3:+103989131 MsG0380018070.01.T01:CDS
AAGAGAGATTGCTGCTTTCT+TGG 0.252696 3:+103988844 MsG0380018070.01.T01:CDS
ACAGTTGTACTTCTAATTAT+AGG 0.265089 3:+103988506 MsG0380018070.01.T01:CDS
AGTGGCAGTATCTCCGTTAT+TGG 0.267179 3:-103988816 None:intergenic
GGATTATGTTGCAGCAAGTT+TGG 0.342049 3:+103988584 MsG0380018070.01.T01:CDS
ACCTGATGGCCCATATGCTT+GGG 0.345696 3:+103988907 MsG0380018070.01.T01:CDS
GGCAAGATGGCTTAGGTGAC+TGG 0.367579 3:-103989162 None:intergenic
GCGGTCTTGAAGGATATAAC+AGG 0.369314 3:-103989118 None:intergenic
CCGCGACGACAGTGGGTGTC+AGG 0.374984 3:+103988733 MsG0380018070.01.T01:CDS
ATCTCTTGGAATTACAACTA+TGG 0.379651 3:+103989034 MsG0380018070.01.T01:CDS
TCTCCGTTATTGGCAAAGTT+GGG 0.384499 3:-103988806 None:intergenic
ATCTCCGTTATTGGCAAAGT+TGG 0.385181 3:-103988807 None:intergenic
AAACAGTATCCCCAAGCATA+TGG 0.388274 3:-103988917 None:intergenic
AGAGAGATTGCTGCTTTCTT+GGG 0.391578 3:+103988845 MsG0380018070.01.T01:CDS
GCCGCACGATCTGCACTTGA+AGG 0.394855 3:-103989211 None:intergenic
GGGTCGGTGGCTACGAGGTC+TGG 0.395115 3:-103989097 None:intergenic
ACGGTGACCAACATAATAAA+TGG 0.408433 3:+103989256 MsG0380018070.01.T01:CDS
CACCTGATGGCCCATATGCT+TGG 0.408615 3:+103988906 MsG0380018070.01.T01:CDS
ACCTTGGTAGCCTCATCTCC+AGG 0.409232 3:+103988684 MsG0380018070.01.T01:CDS
TATCCTTCAAGACCGCTCTA+TGG 0.417767 3:+103989125 MsG0380018070.01.T01:CDS
TTCCCCAACTTTGCCAATAA+CGG 0.422589 3:+103988803 MsG0380018070.01.T01:CDS
TTTGGTTGGTGTGGATCAAC+CGG 0.423582 3:+103988602 MsG0380018070.01.T01:CDS
GAGCAATGCGGTAAACAAGC+TGG 0.425265 3:+103988542 MsG0380018070.01.T01:CDS
CTGAATTCCCATGTGCTTCT+GGG 0.426573 3:+103988981 MsG0380018070.01.T01:CDS
GACAGTGGGTGTCAGGGAAA+AGG 0.431710 3:+103988740 MsG0380018070.01.T01:CDS
TCAAGTGCAGATCGTGCGGC+AGG 0.437021 3:+103989214 MsG0380018070.01.T01:CDS
CCCCAAGCATATGGGCCATC+AGG 0.442945 3:-103988908 None:intergenic
GGGGTCCCATCCAGATCTCT+TGG 0.446620 3:+103989020 MsG0380018070.01.T01:CDS
GGAAGAGTGCAAGATCGAAT+TGG 0.452651 3:+103989307 MsG0380018070.01.T01:CDS
CGTGCGGCAGGGAGGCTGTC+GGG 0.453721 3:+103989226 MsG0380018070.01.T01:CDS
AAGAGATATTGTGACATACT+TGG 0.456754 3:+103989337 MsG0380018070.01.T01:CDS
GCTTGGTTGGCAGTATGTGC+TGG 0.457550 3:-103988957 None:intergenic
AGTTGTAATTCCAAGAGATC+TGG 0.459012 3:-103989030 None:intergenic
TGTGGTGGAAGCAGCGGTGG+TGG 0.464852 3:+103988656 MsG0380018070.01.T01:CDS
GCAGGGAGGCTGTCGGGATA+CGG 0.465392 3:+103989232 MsG0380018070.01.T01:CDS
AAGCCCTCCATTTATTATGT+TGG 0.467188 3:-103989263 None:intergenic
GCTTGAATGCGGAAGAGGAC+AGG 0.469162 3:+103989282 MsG0380018070.01.T01:CDS
CATATTGTTGAAGGTGTCCC+TGG 0.472449 3:-103988702 None:intergenic
AATTATAGGATGCTCCTTTG+CGG 0.484301 3:+103988520 MsG0380018070.01.T01:CDS
ACGTCATGGCAAGATGGCTT+AGG 0.486782 3:-103989169 None:intergenic
TGCAGCAAGTTTGGTTGGTG+TGG 0.495929 3:+103988593 MsG0380018070.01.T01:CDS
TGTCGATGGAGTTGAGGAAG+AGG 0.496125 3:-103989429 None:intergenic
TATTGTGACATACTTGGAGT+TGG 0.497183 3:+103989343 MsG0380018070.01.T01:CDS
TATGTTGCAGCAAGTTTGGT+TGG 0.497633 3:+103988588 MsG0380018070.01.T01:CDS
AGCAATGCGGTAAACAAGCT+GGG 0.497747 3:+103988543 MsG0380018070.01.T01:CDS
CTCAAGCACCGCGACGACAG+TGG 0.499489 3:+103988725 MsG0380018070.01.T01:CDS
AAACCATAGAGCGGTCTTGA+AGG 0.501381 3:-103989128 None:intergenic
GGAGGGCTTGAATGCGGAAG+AGG 0.505113 3:+103989277 MsG0380018070.01.T01:CDS
GACATACTTGGAGTTGGATA+CGG 0.506146 3:+103989349 MsG0380018070.01.T01:CDS
GGTGGAAGCAGCGGTGGTGG+TGG 0.509175 3:+103988659 MsG0380018070.01.T01:CDS
GTCGATGGAGTTGAGGAAGA+GGG 0.513369 3:-103989428 None:intergenic
AACAGTATCCCCAAGCATAT+GGG 0.514066 3:-103988916 None:intergenic
AGCTGAGATGAAAGCATCAT+AGG 0.514449 3:-103988771 None:intergenic
GCAAGATGGCTTAGGTGACT+GGG 0.515135 3:-103989161 None:intergenic
CTGGGAAGCAATACTACGGT+AGG 0.515707 3:+103988999 MsG0380018070.01.T01:CDS
GGCAAAGTTGGGGAACGCCT+TGG 0.517997 3:-103988795 None:intergenic
CACACGAAACCACAGGTGGA+TGG 0.523011 3:+103988876 MsG0380018070.01.T01:CDS
ACAGTGGGTGTCAGGGAAAA+GGG 0.529441 3:+103988741 MsG0380018070.01.T01:CDS
GGACAGTGTGGAAGAGCAAT+TGG 0.533270 3:+103989055 MsG0380018070.01.T01:CDS
ATGGGAATTCAGAGCTTGGT+TGG 0.535823 3:-103988970 None:intergenic
GTGCTTGAGCATATTGTTGA+AGG 0.537863 3:-103988711 None:intergenic
CTCCGTTATTGGCAAAGTTG+GGG 0.542346 3:-103988805 None:intergenic
CTTGGTTGGCAGTATGTGCT+GGG 0.542382 3:-103988956 None:intergenic
TCGTGCGGCAGGGAGGCTGT+CGG 0.545230 3:+103989225 MsG0380018070.01.T01:CDS
TCTTGCCATGACGTTATCAC+TGG 0.546008 3:+103989178 MsG0380018070.01.T01:CDS
TGCAGTTGCCCATCCACCTG+TGG 0.547533 3:-103988885 None:intergenic
ACCGGCGAATACTGCGGTGA+TGG 0.555123 3:+103988620 MsG0380018070.01.T01:CDS
ACCATCACCGCAGTATTCGC+CGG 0.557181 3:-103988621 None:intergenic
GCACATGGGAATTCAGAGCT+TGG 0.558874 3:-103988974 None:intergenic
TGGGAAGCAATACTACGGTA+GGG 0.563171 3:+103989000 MsG0380018070.01.T01:CDS
GAGGCTGTCGGGATACGGTA+CGG 0.564016 3:+103989237 MsG0380018070.01.T01:CDS
ACACGAAACCACAGGTGGAT+GGG 0.565619 3:+103988877 MsG0380018070.01.T01:CDS
CGCGACGACAGTGGGTGTCA+GGG 0.571723 3:+103988734 MsG0380018070.01.T01:CDS
ATGACGTTATCACTGGAAGA+TGG 0.572215 3:+103989185 MsG0380018070.01.T01:CDS
TGCTTTCATCTCAGCTGCCA+AGG 0.580046 3:+103988778 MsG0380018070.01.T01:CDS
GTGATAACGTCATGGCAAGA+TGG 0.581329 3:-103989175 None:intergenic
CCCTGGAGATGAGGCTACCA+AGG 0.583593 3:-103988685 None:intergenic
TCCTTCAAGTGCAGATCGTG+CGG 0.587610 3:+103989210 MsG0380018070.01.T01:CDS
TATTGCTTCCCAGAAGCACA+TGG 0.589341 3:-103988989 None:intergenic
GCTAGGTGTCGATGGAGTTG+AGG 0.591338 3:-103989435 None:intergenic
AGCGGTGGTGGTGGTGACCT+TGG 0.600539 3:+103988668 MsG0380018070.01.T01:CDS
CAATGTGGTGGAAGCAGCGG+TGG 0.602079 3:+103988653 MsG0380018070.01.T01:CDS
TAATTCCAAGAGATCTGGAT+GGG 0.607995 3:-103989025 None:intergenic
TCAAGCACCGCGACGACAGT+GGG 0.609911 3:+103988726 MsG0380018070.01.T01:CDS
CAAGTGCAGATCGTGCGGCA+GGG 0.615206 3:+103989215 MsG0380018070.01.T01:CDS
AGTCAATGTGGTGGAAGCAG+CGG 0.617407 3:+103988650 MsG0380018070.01.T01:CDS
GCAATGCGGTAAACAAGCTG+GGG 0.618063 3:+103988544 MsG0380018070.01.T01:CDS
CAAACATCACACGAAACCAC+AGG 0.618152 3:+103988869 MsG0380018070.01.T01:CDS
GGGAAGCAATACTACGGTAG+GGG 0.618995 3:+103989001 MsG0380018070.01.T01:CDS
ATCTTCCAGTGATAACGTCA+TGG 0.619709 3:-103989183 None:intergenic
GAATGCGGAAGAGGACAGGA+TGG 0.619759 3:+103989286 MsG0380018070.01.T01:CDS
TTTACCGCATTGCTCCGCAA+AGG 0.620731 3:-103988534 None:intergenic
GGATGGGCAACTGCACCTGA+TGG 0.623271 3:+103988893 MsG0380018070.01.T01:CDS
GTGACCAACATAATAAATGG+AGG 0.627198 3:+103989259 MsG0380018070.01.T01:CDS
CTTGAAGGATATAACAGGGT+CGG 0.628462 3:-103989113 None:intergenic
GTTGTCAATGAAGATGAGGT+TGG 0.628526 3:+103988472 None:intergenic
GTCTGTTGTCAATGAAGATG+AGG 0.630251 3:+103988468 None:intergenic
CCTTGGTAGCCTCATCTCCA+GGG 0.635248 3:+103988685 MsG0380018070.01.T01:CDS
GTAATTCCAAGAGATCTGGA+TGG 0.639961 3:-103989026 None:intergenic
CGGTCTTGAAGGATATAACA+GGG 0.645313 3:-103989117 None:intergenic
GTGCAGATCGTGCGGCAGGG+AGG 0.647018 3:+103989218 MsG0380018070.01.T01:CDS
CCTGACACCCACTGTCGTCG+CGG 0.651496 3:-103988733 None:intergenic
GAAGGATATAACAGGGTCGG+TGG 0.652248 3:-103989110 None:intergenic
ATAAATGGAGGGCTTGAATG+CGG 0.654818 3:+103989271 MsG0380018070.01.T01:CDS
CCTGATGGCCCATATGCTTG+GGG 0.654850 3:+103988908 MsG0380018070.01.T01:CDS
TGAAGGTGTCCCTGGAGATG+AGG 0.661427 3:-103988694 None:intergenic
TGACCAACATAATAAATGGA+GGG 0.665062 3:+103989260 MsG0380018070.01.T01:CDS
GCTTCTGGGAAGCAATACTA+CGG 0.670213 3:+103988995 MsG0380018070.01.T01:CDS
ATTGCTTCCCAGAAGCACAT+GGG 0.672676 3:-103988988 None:intergenic
ACATCACACGAAACCACAGG+TGG 0.674219 3:+103988872 MsG0380018070.01.T01:CDS
GGATCAACCGGCGAATACTG+CGG 0.679645 3:+103988614 MsG0380018070.01.T01:CDS
TAACAGGGTCGGTGGCTACG+AGG 0.689767 3:-103989102 None:intergenic
CAATGCGGTAAACAAGCTGG+GGG 0.689920 3:+103988545 MsG0380018070.01.T01:CDS
AATGAAAGTGAAGATCCGAA+AGG 0.703939 3:-103989400 None:intergenic
CAAGATGGCTTAGGTGACTG+GGG 0.704287 3:-103989160 None:intergenic
AATTACAACTATGGACAGTG+TGG 0.706508 3:+103989043 MsG0380018070.01.T01:CDS
CGTCATCCAAAACCATAGAG+CGG 0.713501 3:-103989137 None:intergenic
GGTTGTCAGAGTCAATGTGG+TGG 0.713676 3:+103988641 MsG0380018070.01.T01:CDS
TGCTCCTTTGCGGAGCAATG+CGG 0.715396 3:+103988530 MsG0380018070.01.T01:CDS
GATGGTTGTCAGAGTCAATG+TGG 0.748011 3:+103988638 MsG0380018070.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACAGTTGTACTTCTAATTAT+AGG + Chr3:103988506-103988525 MsG0380018070.01.T01:CDS 25.0%
! TTGAGAAAAACAATCAAGAT+TGG - Chr3:103989377-103989396 None:intergenic 25.0%
!!! ATCTTGATTGTTTTTCTCAA+AGG + Chr3:103989377-103989396 MsG0380018070.01.T01:CDS 25.0%
AAGAGATATTGTGACATACT+TGG + Chr3:103989337-103989356 MsG0380018070.01.T01:CDS 30.0%
ATCTCTTGGAATTACAACTA+TGG + Chr3:103989034-103989053 MsG0380018070.01.T01:CDS 30.0%
TGACCAACATAATAAATGGA+GGG + Chr3:103989260-103989279 MsG0380018070.01.T01:CDS 30.0%
!!! AGCAATCTCTCTTTTTTTAG+TGG - Chr3:103988837-103988856 None:intergenic 30.0%
AAGCCCTCCATTTATTATGT+TGG - Chr3:103989266-103989285 None:intergenic 35.0%
AATGAAAGTGAAGATCCGAA+AGG - Chr3:103989403-103989422 None:intergenic 35.0%
AATTACAACTATGGACAGTG+TGG + Chr3:103989043-103989062 MsG0380018070.01.T01:CDS 35.0%
AATTATAGGATGCTCCTTTG+CGG + Chr3:103988520-103988539 MsG0380018070.01.T01:CDS 35.0%
ACGGTGACCAACATAATAAA+TGG + Chr3:103989256-103989275 MsG0380018070.01.T01:CDS 35.0%
AGTTGTAATTCCAAGAGATC+TGG - Chr3:103989033-103989052 None:intergenic 35.0%
GTGACCAACATAATAAATGG+AGG + Chr3:103989259-103989278 MsG0380018070.01.T01:CDS 35.0%
TAATTCCAAGAGATCTGGAT+GGG - Chr3:103989028-103989047 None:intergenic 35.0%
TATTGTGACATACTTGGAGT+TGG + Chr3:103989343-103989362 MsG0380018070.01.T01:CDS 35.0%
! TGTTTTTCTCAAAGGCCTTT+CGG + Chr3:103989385-103989404 MsG0380018070.01.T01:CDS 35.0%
AAACAGTATCCCCAAGCATA+TGG - Chr3:103988920-103988939 None:intergenic 40.0%
AACAGTATCCCCAAGCATAT+GGG - Chr3:103988919-103988938 None:intergenic 40.0%
ATAAATGGAGGGCTTGAATG+CGG + Chr3:103989271-103989290 MsG0380018070.01.T01:CDS 40.0%
ATCTCCGTTATTGGCAAAGT+TGG - Chr3:103988810-103988829 None:intergenic 40.0%
ATGACGTTATCACTGGAAGA+TGG + Chr3:103989185-103989204 MsG0380018070.01.T01:CDS 40.0%
CGGTCTTGAAGGATATAACA+GGG - Chr3:103989120-103989139 None:intergenic 40.0%
CTTGAAGGATATAACAGGGT+CGG - Chr3:103989116-103989135 None:intergenic 40.0%
GACATACTTGGAGTTGGATA+CGG + Chr3:103989349-103989368 MsG0380018070.01.T01:CDS 40.0%
GGATTATGTTGCAGCAAGTT+TGG + Chr3:103988584-103988603 MsG0380018070.01.T01:CDS 40.0%
GTAATTCCAAGAGATCTGGA+TGG - Chr3:103989029-103989048 None:intergenic 40.0%
GTGCTTGAGCATATTGTTGA+AGG - Chr3:103988714-103988733 None:intergenic 40.0%
TATGTTGCAGCAAGTTTGGT+TGG + Chr3:103988588-103988607 MsG0380018070.01.T01:CDS 40.0%
TCTCCGTTATTGGCAAAGTT+GGG - Chr3:103988809-103988828 None:intergenic 40.0%
TTCCCCAACTTTGCCAATAA+CGG + Chr3:103988803-103988822 MsG0380018070.01.T01:CDS 40.0%
! ATCTTCCAGTGATAACGTCA+TGG - Chr3:103989186-103989205 None:intergenic 40.0%
!! AAGAGAGATTGCTGCTTTCT+TGG + Chr3:103988844-103988863 MsG0380018070.01.T01:CDS 40.0%
!! AGAGAGATTGCTGCTTTCTT+GGG + Chr3:103988845-103988864 MsG0380018070.01.T01:CDS 40.0%
!! AGCTGAGATGAAAGCATCAT+AGG - Chr3:103988774-103988793 None:intergenic 40.0%
AAACCATAGAGCGGTCTTGA+AGG - Chr3:103989131-103989150 None:intergenic 45.0%
AGCAATGCGGTAAACAAGCT+GGG + Chr3:103988543-103988562 MsG0380018070.01.T01:CDS 45.0%
AGTGGCAGTATCTCCGTTAT+TGG - Chr3:103988819-103988838 None:intergenic 45.0%
ATGGGAATTCAGAGCTTGGT+TGG - Chr3:103988973-103988992 None:intergenic 45.0%
CAAACATCACACGAAACCAC+AGG + Chr3:103988869-103988888 MsG0380018070.01.T01:CDS 45.0%
CGTCATCCAAAACCATAGAG+CGG - Chr3:103989140-103989159 None:intergenic 45.0%
CTCCGTTATTGGCAAAGTTG+GGG - Chr3:103988808-103988827 None:intergenic 45.0%
CTGAATTCCCATGTGCTTCT+GGG + Chr3:103988981-103989000 MsG0380018070.01.T01:CDS 45.0%
GATGGTTGTCAGAGTCAATG+TGG + Chr3:103988638-103988657 MsG0380018070.01.T01:CDS 45.0%
GCGGTCTTGAAGGATATAAC+AGG - Chr3:103989121-103989140 None:intergenic 45.0%
TATCCTTCAAGACCGCTCTA+TGG + Chr3:103989125-103989144 MsG0380018070.01.T01:CDS 45.0%
TCTGAATTCCCATGTGCTTC+TGG + Chr3:103988980-103988999 MsG0380018070.01.T01:CDS 45.0%
TCTTGCCATGACGTTATCAC+TGG + Chr3:103989178-103989197 MsG0380018070.01.T01:CDS 45.0%
TGGGAAGCAATACTACGGTA+GGG + Chr3:103989000-103989019 MsG0380018070.01.T01:CDS 45.0%
! ATTGCTTCCCAGAAGCACAT+GGG - Chr3:103988991-103989010 None:intergenic 45.0%
! GCTTCTGGGAAGCAATACTA+CGG + Chr3:103988995-103989014 MsG0380018070.01.T01:CDS 45.0%
! GGAAGAGTGCAAGATCGAAT+TGG + Chr3:103989307-103989326 MsG0380018070.01.T01:CDS 45.0%
! GTGATAACGTCATGGCAAGA+TGG - Chr3:103989178-103989197 None:intergenic 45.0%
! TATTGCTTCCCAGAAGCACA+TGG - Chr3:103988992-103989011 None:intergenic 45.0%
! TCAAGACCGCTCTATGGTTT+TGG + Chr3:103989131-103989150 MsG0380018070.01.T01:CDS 45.0%
! TTTGGTTGGTGTGGATCAAC+CGG + Chr3:103988602-103988621 MsG0380018070.01.T01:CDS 45.0%
!! CATATTGTTGAAGGTGTCCC+TGG - Chr3:103988705-103988724 None:intergenic 45.0%
ACACGAAACCACAGGTGGAT+GGG + Chr3:103988877-103988896 MsG0380018070.01.T01:CDS 50.0%
ACAGTGGGTGTCAGGGAAAA+GGG + Chr3:103988741-103988760 MsG0380018070.01.T01:CDS 50.0%
ACATCACACGAAACCACAGG+TGG + Chr3:103988872-103988891 MsG0380018070.01.T01:CDS 50.0%
ACCTGATGGCCCATATGCTT+GGG + Chr3:103988907-103988926 MsG0380018070.01.T01:CDS 50.0%
ACGTCATGGCAAGATGGCTT+AGG - Chr3:103989172-103989191 None:intergenic 50.0%
CAAGATGGCTTAGGTGACTG+GGG - Chr3:103989163-103989182 None:intergenic 50.0%
CAATGCGGTAAACAAGCTGG+GGG + Chr3:103988545-103988564 MsG0380018070.01.T01:CDS 50.0%
CTGGGAAGCAATACTACGGT+AGG + Chr3:103988999-103989018 MsG0380018070.01.T01:CDS 50.0%
CTTGGTTGGCAGTATGTGCT+GGG - Chr3:103988959-103988978 None:intergenic 50.0%
GAAGGATATAACAGGGTCGG+TGG - Chr3:103989113-103989132 None:intergenic 50.0%
GAGCAATGCGGTAAACAAGC+TGG + Chr3:103988542-103988561 MsG0380018070.01.T01:CDS 50.0%
GCAAGATGGCTTAGGTGACT+GGG - Chr3:103989164-103989183 None:intergenic 50.0%
GCAATGCGGTAAACAAGCTG+GGG + Chr3:103988544-103988563 MsG0380018070.01.T01:CDS 50.0%
GCACATGGGAATTCAGAGCT+TGG - Chr3:103988977-103988996 None:intergenic 50.0%
GGACAGTGTGGAAGAGCAAT+TGG + Chr3:103989055-103989074 MsG0380018070.01.T01:CDS 50.0%
GGGAAGCAATACTACGGTAG+GGG + Chr3:103989001-103989020 MsG0380018070.01.T01:CDS 50.0%
GGTTGTCAGAGTCAATGTGG+TGG + Chr3:103988641-103988660 MsG0380018070.01.T01:CDS 50.0%
GTCGATGGAGTTGAGGAAGA+GGG - Chr3:103989431-103989450 None:intergenic 50.0%
TCCTTCAAGTGCAGATCGTG+CGG + Chr3:103989210-103989229 MsG0380018070.01.T01:CDS 50.0%
TGCTGCAACATAATCCCCCT+GGG - Chr3:103988580-103988599 None:intergenic 50.0%
TGCTTTCATCTCAGCTGCCA+AGG + Chr3:103988778-103988797 MsG0380018070.01.T01:CDS 50.0%
TGTCGATGGAGTTGAGGAAG+AGG - Chr3:103989432-103989451 None:intergenic 50.0%
TTGCTGCAACATAATCCCCC+TGG - Chr3:103988581-103988600 None:intergenic 50.0%
TTTACCGCATTGCTCCGCAA+AGG - Chr3:103988537-103988556 None:intergenic 50.0%
! AGTCAATGTGGTGGAAGCAG+CGG + Chr3:103988650-103988669 MsG0380018070.01.T01:CDS 50.0%
! TGCAGCAAGTTTGGTTGGTG+TGG + Chr3:103988593-103988612 MsG0380018070.01.T01:CDS 50.0%
ACCATCACCGCAGTATTCGC+CGG - Chr3:103988624-103988643 None:intergenic 55.0%
CACACGAAACCACAGGTGGA+TGG + Chr3:103988876-103988895 MsG0380018070.01.T01:CDS 55.0%
CACCTGATGGCCCATATGCT+TGG + Chr3:103988906-103988925 MsG0380018070.01.T01:CDS 55.0%
CCTGATGGCCCATATGCTTG+GGG + Chr3:103988908-103988927 MsG0380018070.01.T01:CDS 55.0%
GAATGCGGAAGAGGACAGGA+TGG + Chr3:103989286-103989305 MsG0380018070.01.T01:CDS 55.0%
GACAGTGGGTGTCAGGGAAA+AGG + Chr3:103988740-103988759 MsG0380018070.01.T01:CDS 55.0%
GCTTGAATGCGGAAGAGGAC+AGG + Chr3:103989282-103989301 MsG0380018070.01.T01:CDS 55.0%
GCTTGGTTGGCAGTATGTGC+TGG - Chr3:103988960-103988979 None:intergenic 55.0%
GGATCAACCGGCGAATACTG+CGG + Chr3:103988614-103988633 MsG0380018070.01.T01:CDS 55.0%
GGCAAGATGGCTTAGGTGAC+TGG - Chr3:103989165-103989184 None:intergenic 55.0%
TGCTCCTTTGCGGAGCAATG+CGG + Chr3:103988530-103988549 MsG0380018070.01.T01:CDS 55.0%
! ACCTTGGTAGCCTCATCTCC+AGG + Chr3:103988684-103988703 MsG0380018070.01.T01:CDS 55.0%
! CCTTGGTAGCCTCATCTCCA+GGG + Chr3:103988685-103988704 MsG0380018070.01.T01:CDS 55.0%
!! TGAAGGTGTCCCTGGAGATG+AGG - Chr3:103988697-103988716 None:intergenic 55.0%
ACCGGCGAATACTGCGGTGA+TGG + Chr3:103988620-103988639 MsG0380018070.01.T01:CDS 60.0%
CAAGTGCAGATCGTGCGGCA+GGG + Chr3:103989215-103989234 MsG0380018070.01.T01:CDS 60.0%
CCCCAAGCATATGGGCCATC+AGG - Chr3:103988911-103988930 None:intergenic 60.0%
CCCTGGAGATGAGGCTACCA+AGG - Chr3:103988688-103988707 None:intergenic 60.0%
GAGGCTGTCGGGATACGGTA+CGG + Chr3:103989237-103989256 MsG0380018070.01.T01:CDS 60.0%
GCCGCACGATCTGCACTTGA+AGG - Chr3:103989214-103989233 None:intergenic 60.0%
GGAGGGCTTGAATGCGGAAG+AGG + Chr3:103989277-103989296 MsG0380018070.01.T01:CDS 60.0%
GGATGGGCAACTGCACCTGA+TGG + Chr3:103988893-103988912 MsG0380018070.01.T01:CDS 60.0%
GGCAAAGTTGGGGAACGCCT+TGG - Chr3:103988798-103988817 None:intergenic 60.0%
GGGGTCCCATCCAGATCTCT+TGG + Chr3:103989020-103989039 MsG0380018070.01.T01:CDS 60.0%
TAACAGGGTCGGTGGCTACG+AGG - Chr3:103989105-103989124 None:intergenic 60.0%
TCAAGTGCAGATCGTGCGGC+AGG + Chr3:103989214-103989233 MsG0380018070.01.T01:CDS 60.0%
TGCAGTTGCCCATCCACCTG+TGG - Chr3:103988888-103988907 None:intergenic 60.0%
! CAATGTGGTGGAAGCAGCGG+TGG + Chr3:103988653-103988672 MsG0380018070.01.T01:CDS 60.0%
! TCAAGCACCGCGACGACAGT+GGG + Chr3:103988726-103988745 MsG0380018070.01.T01:CDS 60.0%
CCTGACACCCACTGTCGTCG+CGG - Chr3:103988736-103988755 None:intergenic 65.0%
CGCGACGACAGTGGGTGTCA+GGG + Chr3:103988734-103988753 MsG0380018070.01.T01:CDS 65.0%
GCAGGGAGGCTGTCGGGATA+CGG + Chr3:103989232-103989251 MsG0380018070.01.T01:CDS 65.0%
! CTCAAGCACCGCGACGACAG+TGG + Chr3:103988725-103988744 MsG0380018070.01.T01:CDS 65.0%
! TGTGGTGGAAGCAGCGGTGG+TGG + Chr3:103988656-103988675 MsG0380018070.01.T01:CDS 65.0%
!! AGCGGTGGTGGTGGTGACCT+TGG + Chr3:103988668-103988687 MsG0380018070.01.T01:CDS 65.0%
CCGCGACGACAGTGGGTGTC+AGG + Chr3:103988733-103988752 MsG0380018070.01.T01:CDS 70.0%
GGGTCGGTGGCTACGAGGTC+TGG - Chr3:103989100-103989119 None:intergenic 70.0%
GTGCAGATCGTGCGGCAGGG+AGG + Chr3:103989218-103989237 MsG0380018070.01.T01:CDS 70.0%
TCGTGCGGCAGGGAGGCTGT+CGG + Chr3:103989225-103989244 MsG0380018070.01.T01:CDS 70.0%
! CTGGGGGTGCGTTGTGCCCA+GGG + Chr3:103988561-103988580 MsG0380018070.01.T01:CDS 70.0%
! GGTGGAAGCAGCGGTGGTGG+TGG + Chr3:103988659-103988678 MsG0380018070.01.T01:CDS 70.0%
! TGGGGGTGCGTTGTGCCCAG+GGG + Chr3:103988562-103988581 MsG0380018070.01.T01:CDS 70.0%
CGTGCGGCAGGGAGGCTGTC+GGG + Chr3:103989226-103989245 MsG0380018070.01.T01:CDS 75.0%
! GCTGGGGGTGCGTTGTGCCC+AGG + Chr3:103988560-103988579 MsG0380018070.01.T01:CDS 75.0%
! GGGGGTGCGTTGTGCCCAGG+GGG + Chr3:103988563-103988582 MsG0380018070.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 103988479 103989456 103988479 ID=MsG0380018070.01;Name=MsG0380018070.01
Chr3 mRNA 103988479 103989456 103988479 ID=MsG0380018070.01.T01;Parent=MsG0380018070.01;Name=MsG0380018070.01.T01;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|325
Chr3 exon 103988479 103989456 103988479 ID=MsG0380018070.01.T01:exon:26973;Parent=MsG0380018070.01.T01
Chr3 CDS 103988479 103989456 103988479 ID=MsG0380018070.01.T01:cds;Parent=MsG0380018070.01.T01
Gene Sequence

>MsG0380018070.01.T01

ATGAAGATGAGGTTGGCACTAGTAGCAACAGTTGTACTTCTAATTATAGGATGCTCCTTTGCGGAGCAATGCGGTAAACAAGCTGGGGGTGCGTTGTGCCCAGGGGGATTATGTTGCAGCAAGTTTGGTTGGTGTGGATCAACCGGCGAATACTGCGGTGATGGTTGTCAGAGTCAATGTGGTGGAAGCAGCGGTGGTGGTGGTGACCTTGGTAGCCTCATCTCCAGGGACACCTTCAACAATATGCTCAAGCACCGCGACGACAGTGGGTGTCAGGGAAAAGGGTTATATACCTATGATGCTTTCATCTCAGCTGCCAAGGCGTTCCCCAACTTTGCCAATAACGGAGATACTGCCACTAAAAAAAGAGAGATTGCTGCTTTCTTGGGTCAAACATCACACGAAACCACAGGTGGATGGGCAACTGCACCTGATGGCCCATATGCTTGGGGATACTGTTTTGTGAGAGAACAGAATCCCAGCACATACTGCCAACCAAGCTCTGAATTCCCATGTGCTTCTGGGAAGCAATACTACGGTAGGGGTCCCATCCAGATCTCTTGGAATTACAACTATGGACAGTGTGGAAGAGCAATTGGTGTTGACTTGCTCAACAATCCAGACCTCGTAGCCACCGACCCTGTTATATCCTTCAAGACCGCTCTATGGTTTTGGATGACGCCCCAGTCACCTAAGCCATCTTGCCATGACGTTATCACTGGAAGATGGAGTCCTTCAAGTGCAGATCGTGCGGCAGGGAGGCTGTCGGGATACGGTACGGTGACCAACATAATAAATGGAGGGCTTGAATGCGGAAGAGGACAGGATGGAAGAGTGCAAGATCGAATTGGATTTTACAAGAGATATTGTGACATACTTGGAGTTGGATACGGAGCCAATCTTGATTGTTTTTCTCAAAGGCCTTTCGGATCTTCACTTTCATTATCATCCCTCTTCCTCAACTCCATCGACACCTAG

Protein sequence

>MsG0380018070.01.T01

MKMRLALVATVVLLIIGCSFAEQCGKQAGGALCPGGLCCSKFGWCGSTGEYCGDGCQSQCGGSSGGGGDLGSLISRDTFNNMLKHRDDSGCQGKGLYTYDAFISAAKAFPNFANNGDTATKKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVREQNPSTYCQPSSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGRWSPSSADRAAGRLSGYGTVTNIINGGLECGRGQDGRVQDRIGFYKRYCDILGVGYGANLDCFSQRPFGSSLSLSSLFLNSIDT*