Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006832.01.T01 | XP_013462551.1 | 99.585 | 241 | 1 | 0 | 1 | 241 | 1 | 241 | 3.09E-175 | 492 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006832.01.T01 | Q96452 | 84.426 | 244 | 35 | 2 | 1 | 241 | 1 | 244 | 6.40E-149 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006832.01.T01 | I3T8Q5 | 99.585 | 241 | 1 | 0 | 1 | 241 | 1 | 241 | 1.48e-175 | 492 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047814.01 | MsG0280006832.01 | 0.806634 | 7.477526e-50 | 4.078760e-47 |
| MsG0080048058.01 | MsG0280006832.01 | 0.802963 | 4.371492e-49 | 2.170171e-46 |
| MsG0180000001.01 | MsG0280006832.01 | 0.806181 | 9.317501e-50 | 5.024513e-47 |
| MsG0180001173.01 | MsG0280006832.01 | 0.809415 | 1.913608e-50 | 1.122895e-47 |
| MsG0180001237.01 | MsG0280006832.01 | 0.829997 | 3.762606e-55 | 3.914082e-52 |
| MsG0180001260.01 | MsG0280006832.01 | 0.816320 | 5.878020e-52 | 4.151820e-49 |
| MsG0180001294.01 | MsG0280006832.01 | 0.805335 | 1.403210e-49 | 7.403902e-47 |
| MsG0180001566.01 | MsG0280006832.01 | 0.805294 | 1.430758e-49 | 7.541523e-47 |
| MsG0180004991.01 | MsG0280006832.01 | 0.847040 | 1.486745e-59 | 2.609083e-56 |
| MsG0180005443.01 | MsG0280006832.01 | 0.855022 | 8.334928e-62 | 1.897792e-58 |
| MsG0180005451.01 | MsG0280006832.01 | 0.838521 | 2.736728e-57 | 3.674857e-54 |
| MsG0180005493.01 | MsG0280006832.01 | 0.806610 | 7.565011e-50 | 4.124074e-47 |
| MsG0180005944.01 | MsG0280006832.01 | 0.800056 | 1.723554e-48 | 7.947891e-46 |
| MsG0180006235.01 | MsG0280006832.01 | 0.828214 | 1.018187e-54 | 1.005477e-51 |
| MsG0280006759.01 | MsG0280006832.01 | 0.810304 | 1.231790e-50 | 7.398643e-48 |
| MsG0280006832.01 | MsG0280006881.01 | 0.859912 | 2.978390e-63 | 7.996017e-60 |
| MsG0280006832.01 | MsG0280007764.01 | 0.813871 | 2.054819e-51 | 1.357750e-48 |
| MsG0280006832.01 | MsG0280008614.01 | 0.802535 | 5.358238e-49 | 2.631165e-46 |
| MsG0280006832.01 | MsG0280008885.01 | 0.814079 | 1.849292e-51 | 1.228815e-48 |
| MsG0280006832.01 | MsG0280008909.01 | 0.802768 | 4.796817e-49 | 2.369619e-46 |
| MsG0280006832.01 | MsG0380012461.01 | 0.805007 | 1.642916e-49 | 8.596239e-47 |
| MsG0280006832.01 | MsG0380012869.01 | 0.804122 | 2.513945e-49 | 1.285716e-46 |
| MsG0280006832.01 | MsG0380016102.01 | 0.802010 | 6.871180e-49 | 3.329311e-46 |
| MsG0280006832.01 | MsG0380016227.01 | 0.800748 | 1.246231e-48 | 5.848434e-46 |
| MsG0280006832.01 | MsG0380017375.01 | 0.814388 | 1.580716e-51 | 1.059262e-48 |
| MsG0280006832.01 | MsG0380017431.01 | 0.808916 | 2.448282e-50 | 1.417480e-47 |
| MsG0280006832.01 | MsG0480018640.01 | 0.804398 | 2.202536e-49 | 1.134413e-46 |
| MsG0280006832.01 | MsG0480020242.01 | 0.800092 | 1.695059e-48 | 7.823587e-46 |
| MsG0280006832.01 | MsG0480020331.01 | 0.810731 | 9.961238e-51 | 6.051888e-48 |
| MsG0280006832.01 | MsG0480021772.01 | 0.812498 | 4.112711e-51 | 2.619149e-48 |
| MsG0280006832.01 | MsG0480022115.01 | 0.804190 | 2.433067e-49 | 1.246493e-46 |
| MsG0280006832.01 | MsG0480022228.01 | 0.822114 | 2.816130e-53 | 2.335344e-50 |
| MsG0280006832.01 | MsG0480023245.01 | 0.800460 | 1.426104e-48 | 6.643932e-46 |
| MsG0280006832.01 | MsG0580024618.01 | 0.804074 | 2.572243e-49 | 1.313953e-46 |
| MsG0280006832.01 | MsG0680031699.01 | 0.807133 | 5.865576e-50 | 3.241115e-47 |
| MsG0280006832.01 | MsG0780040688.01 | 0.817050 | 4.031537e-52 | 2.905032e-49 |
| MsG0280006832.01 | MsG0780040926.01 | 0.818939 | 1.509019e-52 | 1.145439e-49 |
| MsG0280006832.01 | MsG0780041423.01 | 0.830949 | 2.200891e-55 | 2.353986e-52 |
| MsG0280006832.01 | MsG0880042760.01 | 0.806557 | 7.762002e-50 | 4.225928e-47 |
| MsG0280006832.01 | MsG0880042829.01 | 0.811643 | 6.317798e-51 | 3.931726e-48 |
| MsG0280006832.01 | MsG0880044565.01 | 0.812584 | 3.939166e-51 | 2.514258e-48 |
| MsG0280006832.01 | MsG0880045838.01 | 0.821442 | 4.029502e-53 | 3.278527e-50 |
| MsG0280006832.01 | MsG0880046027.01 | 0.806264 | 8.950475e-50 | 4.836763e-47 |
| MsG0280006832.01 | MsG0880046086.01 | 0.815724 | 7.983326e-52 | 5.547760e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006832.01.T01 | MTR_2g015980 | 99.585 | 241 | 1 | 0 | 1 | 241 | 1 | 241 | 3.74e-179 | 492 |
| MsG0280006832.01.T01 | MTR_8g086270 | 84.937 | 239 | 35 | 1 | 6 | 243 | 8 | 246 | 2.16e-153 | 427 |
| MsG0280006832.01.T01 | MTR_2g091225 | 83.613 | 238 | 38 | 1 | 6 | 242 | 8 | 245 | 3.60e-152 | 424 |
| MsG0280006832.01.T01 | MTR_2g076960 | 78.723 | 235 | 49 | 1 | 6 | 239 | 9 | 243 | 1.55e-141 | 397 |
| MsG0280006832.01.T01 | MTR_2g091225 | 82.805 | 221 | 37 | 1 | 23 | 242 | 2 | 222 | 5.71e-140 | 392 |
| MsG0280006832.01.T01 | MTR_5g044160 | 76.923 | 234 | 53 | 1 | 9 | 241 | 11 | 244 | 8.51e-136 | 383 |
| MsG0280006832.01.T01 | MTR_4g083060 | 77.778 | 234 | 51 | 1 | 9 | 241 | 11 | 244 | 8.58e-136 | 384 |
| MsG0280006832.01.T01 | MTR_5g064580 | 70.661 | 242 | 68 | 2 | 3 | 241 | 6 | 247 | 6.80e-125 | 355 |
| MsG0280006832.01.T01 | MTR_3g099380 | 70.248 | 242 | 69 | 2 | 3 | 241 | 6 | 247 | 5.08e-123 | 350 |
| MsG0280006832.01.T01 | MTR_3g100620 | 64.557 | 237 | 80 | 2 | 6 | 238 | 12 | 248 | 7.28e-109 | 314 |
| MsG0280006832.01.T01 | MTR_3g099380 | 68.182 | 198 | 60 | 2 | 3 | 197 | 6 | 203 | 3.31e-95 | 278 |
| MsG0280006832.01.T01 | MTR_0137s0020 | 52.361 | 233 | 104 | 4 | 6 | 234 | 12 | 241 | 1.88e-72 | 222 |
| MsG0280006832.01.T01 | MTR_3g014060 | 51.931 | 233 | 105 | 4 | 6 | 234 | 12 | 241 | 1.29e-71 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006832.01.T01 | AT2G42590 | 80.932 | 236 | 44 | 1 | 8 | 242 | 10 | 245 | 1.29e-143 | 403 |
| MsG0280006832.01.T01 | AT2G42590 | 80.932 | 236 | 44 | 1 | 8 | 242 | 10 | 245 | 1.33e-143 | 402 |
| MsG0280006832.01.T01 | AT2G42590 | 81.545 | 233 | 42 | 1 | 8 | 239 | 10 | 242 | 2.72e-142 | 399 |
| MsG0280006832.01.T01 | AT1G26480 | 76.891 | 238 | 54 | 1 | 6 | 242 | 11 | 248 | 2.03e-140 | 395 |
| MsG0280006832.01.T01 | AT1G34760 | 77.778 | 234 | 50 | 2 | 9 | 241 | 9 | 241 | 4.51e-133 | 375 |
| MsG0280006832.01.T01 | AT1G34760 | 77.778 | 234 | 50 | 2 | 9 | 241 | 9 | 241 | 5.54e-133 | 375 |
| MsG0280006832.01.T01 | AT1G22300 | 78.423 | 241 | 51 | 1 | 1 | 240 | 1 | 241 | 3.49e-132 | 373 |
| MsG0280006832.01.T01 | AT1G22300 | 78.099 | 242 | 52 | 1 | 1 | 241 | 1 | 242 | 7.66e-132 | 372 |
| MsG0280006832.01.T01 | AT1G22300 | 78.099 | 242 | 52 | 1 | 1 | 241 | 1 | 242 | 8.00e-132 | 372 |
| MsG0280006832.01.T01 | AT5G38480 | 71.721 | 244 | 65 | 4 | 1 | 241 | 1 | 243 | 2.97e-122 | 348 |
| MsG0280006832.01.T01 | AT1G78300 | 69.262 | 244 | 72 | 2 | 1 | 241 | 1 | 244 | 3.38e-122 | 348 |
| MsG0280006832.01.T01 | AT4G09000 | 68.000 | 250 | 72 | 3 | 1 | 242 | 1 | 250 | 1.28e-121 | 347 |
| MsG0280006832.01.T01 | AT1G35160 | 69.547 | 243 | 71 | 2 | 2 | 241 | 8 | 250 | 3.42e-121 | 346 |
| MsG0280006832.01.T01 | AT3G02520 | 69.959 | 243 | 70 | 2 | 1 | 240 | 1 | 243 | 3.56e-121 | 346 |
| MsG0280006832.01.T01 | AT3G02520 | 69.959 | 243 | 70 | 2 | 1 | 240 | 1 | 243 | 3.56e-121 | 346 |
| MsG0280006832.01.T01 | AT5G38480 | 71.721 | 244 | 65 | 4 | 1 | 241 | 1 | 243 | 3.84e-121 | 345 |
| MsG0280006832.01.T01 | AT5G38480 | 71.721 | 244 | 65 | 4 | 1 | 241 | 1 | 243 | 3.84e-121 | 345 |
| MsG0280006832.01.T01 | AT4G09000 | 69.959 | 243 | 65 | 3 | 1 | 235 | 1 | 243 | 3.01e-120 | 345 |
| MsG0280006832.01.T01 | AT1G35160 | 70.464 | 237 | 67 | 2 | 2 | 235 | 8 | 244 | 8.45e-120 | 343 |
| MsG0280006832.01.T01 | AT5G10450 | 66.527 | 239 | 76 | 2 | 7 | 241 | 9 | 247 | 1.13e-113 | 326 |
| MsG0280006832.01.T01 | AT5G65430 | 66.527 | 239 | 76 | 2 | 7 | 241 | 9 | 247 | 1.20e-113 | 326 |
| MsG0280006832.01.T01 | AT5G10450 | 67.382 | 233 | 72 | 2 | 7 | 235 | 9 | 241 | 1.02e-112 | 324 |
| MsG0280006832.01.T01 | AT5G65430 | 67.382 | 233 | 72 | 2 | 7 | 235 | 9 | 241 | 1.19e-112 | 323 |
| MsG0280006832.01.T01 | AT5G10450 | 67.382 | 233 | 72 | 2 | 7 | 235 | 9 | 241 | 2.15e-112 | 323 |
| MsG0280006832.01.T01 | AT5G65430 | 67.382 | 233 | 72 | 2 | 7 | 235 | 9 | 241 | 2.23e-112 | 323 |
| MsG0280006832.01.T01 | AT5G10450 | 67.382 | 233 | 72 | 2 | 7 | 235 | 9 | 241 | 2.71e-112 | 324 |
| MsG0280006832.01.T01 | AT5G16050 | 65.844 | 243 | 80 | 2 | 3 | 242 | 5 | 247 | 5.41e-112 | 323 |
| MsG0280006832.01.T01 | AT5G16050 | 65.844 | 243 | 80 | 2 | 3 | 242 | 5 | 247 | 5.41e-112 | 323 |
| MsG0280006832.01.T01 | AT1G78220 | 49.787 | 235 | 116 | 1 | 1 | 233 | 1 | 235 | 1.22e-76 | 232 |
| MsG0280006832.01.T01 | AT1G22290 | 48.598 | 214 | 85 | 6 | 1 | 208 | 1 | 195 | 2.30e-52 | 169 |
| MsG0280006832.01.T01 | AT1G22290 | 48.387 | 217 | 87 | 6 | 1 | 211 | 1 | 198 | 3.32e-52 | 169 |
| MsG0280006832.01.T01 | AT2G10450 | 62.500 | 40 | 15 | 0 | 202 | 241 | 17 | 56 | 3.92e-11 | 58.2 |
Find 62 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGAATTGAATTTGAAAA+AGG | 0.215402 | 2:-6859758 | None:intergenic |
| CATCTTATTCCGAATTCTTC+TGG | 0.256329 | 2:+6860308 | MsG0280006832.01.T01:CDS |
| TTGGAGCACGTAGGGCTTCT+TGG | 0.262919 | 2:+6860147 | MsG0280006832.01.T01:CDS |
| TAATATTAGATATACCTTTC+AGG | 0.295110 | 2:-6861342 | None:intergenic |
| TTCGGCTTGTTCAGCGAGTT+TGG | 0.337013 | 2:-6859944 | None:intergenic |
| AGGCGATTATTATCGTTATC+TGG | 0.341220 | 2:+6860471 | MsG0280006832.01.T01:CDS |
| GAAACTCAATGTTGAATTAA+CGG | 0.348481 | 2:+6860082 | MsG0280006832.01.T01:CDS |
| TCAATCCTTGAAAGCGTATC+AGG | 0.360445 | 2:+6860534 | MsG0280006832.01.T01:CDS |
| ATGCGTAACGGTTGGTGGTT+TGG | 0.370363 | 2:-6859865 | None:intergenic |
| GTTGCTTACAAGAATGTTGT+TGG | 0.372901 | 2:+6860128 | MsG0280006832.01.T01:CDS |
| TGGCGGTGTAGACGAAGTTT+TGG | 0.385645 | 2:-6859924 | None:intergenic |
| TGCGTAACGGTTGGTGGTTT+GGG | 0.401320 | 2:-6859864 | None:intergenic |
| ACATCCCGTCAGACTGGGTT+TGG | 0.415057 | 2:+6861278 | MsG0280006832.01.T01:CDS |
| GGCTTGTCACCTTGCCAAGC+AGG | 0.427559 | 2:+6861443 | MsG0280006832.01.T01:CDS |
| TTAGATTCACCAGAAGAATT+CGG | 0.439019 | 2:-6860317 | None:intergenic |
| TCCCACACATCCCGTCAGAC+TGG | 0.445008 | 2:+6861272 | MsG0280006832.01.T01:CDS |
| GAATACCTGATACGCTTTCA+AGG | 0.450333 | 2:-6860539 | None:intergenic |
| TGTCAGAAGTCCACAATGTC+AGG | 0.458840 | 2:-6861554 | None:intergenic |
| TGCTACATCAAATGCCTGCT+TGG | 0.461423 | 2:-6861457 | None:intergenic |
| ATGAAGAAGAAGGGAGAATG+AGG | 0.462657 | 2:-6859839 | None:intergenic |
| GATGTTACCTTCGTAGCGTT+CGG | 0.465455 | 2:-6859962 | None:intergenic |
| CAAATCTCAACGATCTTCCA+TGG | 0.468609 | 2:+6859891 | MsG0280006832.01.T01:exon |
| CACTGATCATGCAGCTTCTG+AGG | 0.487882 | 2:+6861526 | MsG0280006832.01.T01:CDS |
| TGAAAATGCGTAACGGTTGG+TGG | 0.496165 | 2:-6859870 | None:intergenic |
| ATCAATATCGACTCAAACAA+AGG | 0.497937 | 2:+6859778 | MsG0280006832.01.T01:five_prime_UTR |
| CTCAGCCTCTGCAGCAGTGG+AGG | 0.505948 | 2:-6861244 | None:intergenic |
| TGATGTAGCAATCGCTGAGT+TGG | 0.508758 | 2:+6861470 | MsG0280006832.01.T01:CDS |
| GAATGTTGTTGGAGCACGTA+GGG | 0.515655 | 2:+6860139 | MsG0280006832.01.T01:CDS |
| GGAAGCCTCCACTGCTGCAG+AGG | 0.516556 | 2:+6861239 | MsG0280006832.01.T01:intron |
| TTGAATTAACGGTTGAAGAG+AGG | 0.519994 | 2:+6860093 | MsG0280006832.01.T01:CDS |
| AGCAGCGAGAAGAAGCGAAA+GGG | 0.529966 | 2:+6860189 | MsG0280006832.01.T01:CDS |
| AAAGCCAAACCCAGTCTGAC+GGG | 0.541921 | 2:-6861282 | None:intergenic |
| CCCACACATCCCGTCAGACT+GGG | 0.546107 | 2:+6861273 | MsG0280006832.01.T01:CDS |
| ACCCAGTCTGACGGGATGTG+TGG | 0.546504 | 2:-6861274 | None:intergenic |
| GAGCACGTAGGGCTTCTTGG+AGG | 0.551251 | 2:+6860150 | MsG0280006832.01.T01:CDS |
| GGAGTGATGTGAATGTCAAT+CGG | 0.556097 | 2:+6860210 | MsG0280006832.01.T01:CDS |
| TAACTCAGCCTCTGCAGCAG+TGG | 0.556950 | 2:-6861247 | None:intergenic |
| CCCAGTCTGACGGGATGTGT+GGG | 0.556979 | 2:-6861273 | None:intergenic |
| CATCAAATGCCTGCTTGGCA+AGG | 0.559534 | 2:-6861452 | None:intergenic |
| TGTGAATGTCAATCGGATCA+AGG | 0.560657 | 2:+6860217 | MsG0280006832.01.T01:CDS |
| TGAAGAAGAAGGGAGAATGA+GGG | 0.564163 | 2:-6859838 | None:intergenic |
| CAAAGCCAAACCCAGTCTGA+CGG | 0.571522 | 2:-6861283 | None:intergenic |
| GTTTGGGTGATGAAGAAGAA+GGG | 0.573430 | 2:-6859848 | None:intergenic |
| TCAATCGGATCAAGGAGTAT+CGG | 0.575135 | 2:+6860225 | MsG0280006832.01.T01:CDS |
| AAATCTTGAACTCTCCTGAA+AGG | 0.575438 | 2:+6861328 | MsG0280006832.01.T01:CDS |
| GGCTTGTTCAGCGAGTTTGG+CGG | 0.577446 | 2:-6859941 | None:intergenic |
| GAGCGGTGATGAGAGGAAAG+AGG | 0.579801 | 2:+6860504 | MsG0280006832.01.T01:CDS |
| AGTTTAAGAGCGGTGATGAG+AGG | 0.596754 | 2:+6860497 | MsG0280006832.01.T01:CDS |
| ACTGATCATGCAGCTTCTGA+GGG | 0.597947 | 2:+6861527 | MsG0280006832.01.T01:CDS |
| ACTTCTGACATTCCTGAGGA+AGG | 0.613131 | 2:+6861567 | MsG0280006832.01.T01:CDS |
| GAGCAGCGAGAAGAAGCGAA+AGG | 0.628936 | 2:+6860188 | MsG0280006832.01.T01:CDS |
| GGTTTGGGTGATGAAGAAGA+AGG | 0.633297 | 2:-6859849 | None:intergenic |
| TGAGGGACAACCTGACATTG+TGG | 0.634685 | 2:+6861544 | MsG0280006832.01.T01:CDS |
| GTGGACTTCTGACATTCCTG+AGG | 0.637259 | 2:+6861563 | MsG0280006832.01.T01:CDS |
| TCTGACATTCCTGAGGAAGG+AGG | 0.638467 | 2:+6861570 | MsG0280006832.01.T01:CDS |
| GAACAAGCCGAACGCTACGA+AGG | 0.646756 | 2:+6859955 | MsG0280006832.01.T01:CDS |
| ATTTGAAAATGCGTAACGGT+TGG | 0.650153 | 2:-6859873 | None:intergenic |
| TGAGATTTGAAAATGCGTAA+CGG | 0.658721 | 2:-6859877 | None:intergenic |
| AGTCTGACGGGATGTGTGGG+AGG | 0.660311 | 2:-6861270 | None:intergenic |
| TGAGTTGGATTCTCTCAATG+AGG | 0.669995 | 2:+6861485 | MsG0280006832.01.T01:CDS |
| TATCTGGCTGAGTTTAAGAG+CGG | 0.685496 | 2:+6860487 | MsG0280006832.01.T01:CDS |
| AGAATGTTGTTGGAGCACGT+AGG | 0.773880 | 2:+6860138 | MsG0280006832.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAGTAAACAATCATT+AGG | - | Chr2:6860929-6860948 | None:intergenic | 15.0% |
| !! | GATTGAATTGAATTTGAAAA+AGG | - | Chr2:6859761-6859780 | None:intergenic | 20.0% |
| !! | TAATATTAGATATACCTTTC+AGG | - | Chr2:6861345-6861364 | None:intergenic | 20.0% |
| !! | TATTGCCTAAAACTTATAAA+AGG | + | Chr2:6860817-6860836 | MsG0280006832.01.T01:intron | 20.0% |
| !!! | AAACACCTTTTATAAGTTTT+AGG | - | Chr2:6860825-6860844 | None:intergenic | 20.0% |
| !!! | CAAAATGTAGGTTTATTTTT+TGG | + | Chr2:6860352-6860371 | MsG0280006832.01.T01:intron | 20.0% |
| !!! | CTTATAAAAGGTGTTTTTAT+TGG | + | Chr2:6860829-6860848 | MsG0280006832.01.T01:intron | 20.0% |
| ! | AAAAAAATTCTTGAGTGAAC+TGG | - | Chr2:6861165-6861184 | None:intergenic | 25.0% |
| ! | AAACCTATAACAAGATTAGA+TGG | - | Chr2:6860787-6860806 | None:intergenic | 25.0% |
| ! | AACTGTTATATACACTTCAT+AGG | + | Chr2:6860897-6860916 | MsG0280006832.01.T01:intron | 25.0% |
| ! | ACTGTTATATACACTTCATA+GGG | + | Chr2:6860898-6860917 | MsG0280006832.01.T01:intron | 25.0% |
| ! | GAAACTCAATGTTGAATTAA+CGG | + | Chr2:6860082-6860101 | MsG0280006832.01.T01:CDS | 25.0% |
| ! | TCATACATGAAAATAATTGC+AGG | + | Chr2:6861218-6861237 | MsG0280006832.01.T01:intron | 25.0% |
| ! | TGTGTTCTATTACAAAATGT+AGG | + | Chr2:6860340-6860359 | MsG0280006832.01.T01:intron | 25.0% |
| !! | ATTCCATCTAATCTTGTTAT+AGG | + | Chr2:6860781-6860800 | MsG0280006832.01.T01:intron | 25.0% |
| !!! | TGCTTTGTTTCTTTTAGAAA+TGG | + | Chr2:6860037-6860056 | MsG0280006832.01.T01:intron | 25.0% |
| CTGTTATATACACTTCATAG+GGG | + | Chr2:6860899-6860918 | MsG0280006832.01.T01:intron | 30.0% | |
| GAAAAAAGTTGAATCAGAGT+TGG | + | Chr2:6860247-6860266 | MsG0280006832.01.T01:CDS | 30.0% | |
| TGAGATTTGAAAATGCGTAA+CGG | - | Chr2:6859880-6859899 | None:intergenic | 30.0% | |
| TTAGATTCACCAGAAGAATT+CGG | - | Chr2:6860320-6860339 | None:intergenic | 30.0% | |
| TTCATCTTCAAATCAATCAC+AGG | - | Chr2:6860957-6860976 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCTTTCGTATTTC+AGG | + | Chr2:6861421-6861440 | MsG0280006832.01.T01:intron | 30.0% |
| ! | CTGTTTTCTTTCGTATTTCA+GGG | + | Chr2:6861422-6861441 | MsG0280006832.01.T01:intron | 30.0% |
| ! | TTTTGCATTCGAATTCATTG+TGG | + | Chr2:6860872-6860891 | MsG0280006832.01.T01:intron | 30.0% |
| !! | ATCAATATCGACTCAAACAA+AGG | + | Chr2:6859778-6859797 | MsG0280006832.01.T01:five_prime_UTR | 30.0% |
| !! | ATTGATTTGAAGATGAAGTG+AGG | + | Chr2:6860960-6860979 | MsG0280006832.01.T01:intron | 30.0% |
| !!! | ACTCAAGAATTTTTTTGCAC+TGG | + | Chr2:6861169-6861188 | MsG0280006832.01.T01:intron | 30.0% |
| !!! | GATGGTTTTTCAAGTAAAAG+AGG | - | Chr2:6861084-6861103 | None:intergenic | 30.0% |
| !!! | TGATCTATGATTGGTTTTCA+TGG | + | Chr2:6861053-6861072 | MsG0280006832.01.T01:intron | 30.0% |
| AAAAACCATCATCGTGTCTA+GGG | + | Chr2:6861094-6861113 | MsG0280006832.01.T01:intron | 35.0% | |
| AAATCTTGAACTCTCCTGAA+AGG | + | Chr2:6861328-6861347 | MsG0280006832.01.T01:CDS | 35.0% | |
| AACCAATCATAGATCAGTCT+TGG | - | Chr2:6861049-6861068 | None:intergenic | 35.0% | |
| ACCAATCATAGATCAGTCTT+GGG | - | Chr2:6861048-6861067 | None:intergenic | 35.0% | |
| AGGCGATTATTATCGTTATC+TGG | + | Chr2:6860471-6860490 | MsG0280006832.01.T01:CDS | 35.0% | |
| AGGTATTCTACACAATTGTC+GGG | + | Chr2:6860554-6860573 | MsG0280006832.01.T01:intron | 35.0% | |
| ATTTGAAAATGCGTAACGGT+TGG | - | Chr2:6859876-6859895 | None:intergenic | 35.0% | |
| CAGGTATTCTACACAATTGT+CGG | + | Chr2:6860553-6860572 | MsG0280006832.01.T01:intron | 35.0% | |
| CATCTTATTCCGAATTCTTC+TGG | + | Chr2:6860308-6860327 | MsG0280006832.01.T01:CDS | 35.0% | |
| CTTGAAAGCTTAATCATGCT+TGG | + | Chr2:6860627-6860646 | MsG0280006832.01.T01:intron | 35.0% | |
| GTTGCTTACAAGAATGTTGT+TGG | + | Chr2:6860128-6860147 | MsG0280006832.01.T01:CDS | 35.0% | |
| GTTTGATTGTGTTGTAGGAA+AGG | + | Chr2:6860451-6860470 | MsG0280006832.01.T01:intron | 35.0% | |
| TTCGTGTTTGATTGTGTTGT+AGG | + | Chr2:6860446-6860465 | MsG0280006832.01.T01:intron | 35.0% | |
| TTGAATTAACGGTTGAAGAG+AGG | + | Chr2:6860093-6860112 | MsG0280006832.01.T01:CDS | 35.0% | |
| ! | TGAAGTGAGGTGTTATATGT+TGG | + | Chr2:6860973-6860992 | MsG0280006832.01.T01:intron | 35.0% |
| ! | TTTTTGCTCGCGATGAAATT+TGG | + | Chr2:6860401-6860420 | MsG0280006832.01.T01:intron | 35.0% |
| !!! | TGTAGACGAAGTTTTGGTTA+GGG | - | Chr2:6859921-6859940 | None:intergenic | 35.0% |
| AAAACCATCATCGTGTCTAG+GGG | + | Chr2:6861095-6861114 | MsG0280006832.01.T01:intron | 40.0% | |
| ATGAAGAAGAAGGGAGAATG+AGG | - | Chr2:6859842-6859861 | None:intergenic | 40.0% | |
| CAAATCTCAACGATCTTCCA+TGG | + | Chr2:6859891-6859910 | MsG0280006832.01.T01:exon | 40.0% | |
| GAAAAACCATCATCGTGTCT+AGG | + | Chr2:6861093-6861112 | MsG0280006832.01.T01:intron | 40.0% | |
| GAATACCTGATACGCTTTCA+AGG | - | Chr2:6860542-6860561 | None:intergenic | 40.0% | |
| GGAGTGATGTGAATGTCAAT+CGG | + | Chr2:6860210-6860229 | MsG0280006832.01.T01:CDS | 40.0% | |
| GGTATTCTACACAATTGTCG+GGG | + | Chr2:6860555-6860574 | MsG0280006832.01.T01:intron | 40.0% | |
| GTTTGGGTGATGAAGAAGAA+GGG | - | Chr2:6859851-6859870 | None:intergenic | 40.0% | |
| TATCTGGCTGAGTTTAAGAG+CGG | + | Chr2:6860487-6860506 | MsG0280006832.01.T01:CDS | 40.0% | |
| TCCCAAGACTGATCTATGAT+TGG | + | Chr2:6861044-6861063 | MsG0280006832.01.T01:intron | 40.0% | |
| TGAAGAAGAAGGGAGAATGA+GGG | - | Chr2:6859841-6859860 | None:intergenic | 40.0% | |
| TGTGAATGTCAATCGGATCA+AGG | + | Chr2:6860217-6860236 | MsG0280006832.01.T01:CDS | 40.0% | |
| ! | TATGTTGGTGCTTAGTCTTC+AGG | + | Chr2:6860988-6861007 | MsG0280006832.01.T01:intron | 40.0% |
| ! | TCAATCCTTGAAAGCGTATC+AGG | + | Chr2:6860534-6860553 | MsG0280006832.01.T01:CDS | 40.0% |
| ! | TCAATCGGATCAAGGAGTAT+CGG | + | Chr2:6860225-6860244 | MsG0280006832.01.T01:CDS | 40.0% |
| ! | TGAGTTGGATTCTCTCAATG+AGG | + | Chr2:6861485-6861504 | MsG0280006832.01.T01:CDS | 40.0% |
| !!! | GTAGACGAAGTTTTGGTTAG+GGG | - | Chr2:6859920-6859939 | None:intergenic | 40.0% |
| !!! | GTGTAGACGAAGTTTTGGTT+AGG | - | Chr2:6859922-6859941 | None:intergenic | 40.0% |
| ACTGATCATGCAGCTTCTGA+GGG | + | Chr2:6861527-6861546 | MsG0280006832.01.T01:CDS | 45.0% | |
| ACTTCTGACATTCCTGAGGA+AGG | + | Chr2:6861567-6861586 | MsG0280006832.01.T01:CDS | 45.0% | |
| AGAATGTTGTTGGAGCACGT+AGG | + | Chr2:6860138-6860157 | MsG0280006832.01.T01:CDS | 45.0% | |
| AGTTTAAGAGCGGTGATGAG+AGG | + | Chr2:6860497-6860516 | MsG0280006832.01.T01:CDS | 45.0% | |
| GAATGTTGTTGGAGCACGTA+GGG | + | Chr2:6860139-6860158 | MsG0280006832.01.T01:CDS | 45.0% | |
| GATGTTACCTTCGTAGCGTT+CGG | - | Chr2:6859965-6859984 | None:intergenic | 45.0% | |
| GGTTTGGGTGATGAAGAAGA+AGG | - | Chr2:6859852-6859871 | None:intergenic | 45.0% | |
| TCTTCAATAAAGCAGTCCGC+AGG | + | Chr2:6860712-6860731 | MsG0280006832.01.T01:intron | 45.0% | |
| TGAAAATGCGTAACGGTTGG+TGG | - | Chr2:6859873-6859892 | None:intergenic | 45.0% | |
| TGATGTAGCAATCGCTGAGT+TGG | + | Chr2:6861470-6861489 | MsG0280006832.01.T01:CDS | 45.0% | |
| TGCTACATCAAATGCCTGCT+TGG | - | Chr2:6861460-6861479 | None:intergenic | 45.0% | |
| TGTCAGAAGTCCACAATGTC+AGG | - | Chr2:6861557-6861576 | None:intergenic | 45.0% | |
| ! | TAGTTTTCACCTCCTTCCTC+AGG | - | Chr2:6861582-6861601 | None:intergenic | 45.0% |
| AAAGCCAAACCCAGTCTGAC+GGG | - | Chr2:6861285-6861304 | None:intergenic | 50.0% | |
| ACTTCCCCTAGACACGATGA+TGG | - | Chr2:6861102-6861121 | None:intergenic | 50.0% | |
| AGCAGCGAGAAGAAGCGAAA+GGG | + | Chr2:6860189-6860208 | MsG0280006832.01.T01:CDS | 50.0% | |
| ATAAAGCAGTCCGCAGGACT+TGG | + | Chr2:6860718-6860737 | MsG0280006832.01.T01:intron | 50.0% | |
| CAAAGCCAAACCCAGTCTGA+CGG | - | Chr2:6861286-6861305 | None:intergenic | 50.0% | |
| CACTGATCATGCAGCTTCTG+AGG | + | Chr2:6861526-6861545 | MsG0280006832.01.T01:CDS | 50.0% | |
| CATCAAATGCCTGCTTGGCA+AGG | - | Chr2:6861455-6861474 | None:intergenic | 50.0% | |
| GTGGACTTCTGACATTCCTG+AGG | + | Chr2:6861563-6861582 | MsG0280006832.01.T01:CDS | 50.0% | |
| TCTGACATTCCTGAGGAAGG+AGG | + | Chr2:6861570-6861589 | MsG0280006832.01.T01:CDS | 50.0% | |
| TGAGGGACAACCTGACATTG+TGG | + | Chr2:6861544-6861563 | MsG0280006832.01.T01:CDS | 50.0% | |
| ! | TGGCGGTGTAGACGAAGTTT+TGG | - | Chr2:6859927-6859946 | None:intergenic | 50.0% |
| ! | TGGTGCTTAGTCTTCAGGCA+TGG | + | Chr2:6860993-6861012 | MsG0280006832.01.T01:intron | 50.0% |
| ! | TTCGGCTTGTTCAGCGAGTT+TGG | - | Chr2:6859947-6859966 | None:intergenic | 50.0% |
| !! | ATGCGTAACGGTTGGTGGTT+TGG | - | Chr2:6859868-6859887 | None:intergenic | 50.0% |
| !! | TGCGTAACGGTTGGTGGTTT+GGG | - | Chr2:6859867-6859886 | None:intergenic | 50.0% |
| !!! | GTTTTGGTTAGGGGAAGCCA+TGG | - | Chr2:6859911-6859930 | None:intergenic | 50.0% |
| AAGAGACCAGCCTAGCACTG+AGG | - | Chr2:6861396-6861415 | None:intergenic | 55.0% | |
| ACATCCCGTCAGACTGGGTT+TGG | + | Chr2:6861278-6861297 | MsG0280006832.01.T01:CDS | 55.0% | |
| GAACAAGCCGAACGCTACGA+AGG | + | Chr2:6859955-6859974 | MsG0280006832.01.T01:CDS | 55.0% | |
| GAGCAGCGAGAAGAAGCGAA+AGG | + | Chr2:6860188-6860207 | MsG0280006832.01.T01:CDS | 55.0% | |
| GAGCGGTGATGAGAGGAAAG+AGG | + | Chr2:6860504-6860523 | MsG0280006832.01.T01:CDS | 55.0% | |
| TAACTCAGCCTCTGCAGCAG+TGG | - | Chr2:6861250-6861269 | None:intergenic | 55.0% | |
| TCCCGAAAAGCCAAGTCCTG+CGG | - | Chr2:6860731-6860750 | None:intergenic | 55.0% | |
| TTGGAGCACGTAGGGCTTCT+TGG | + | Chr2:6860147-6860166 | MsG0280006832.01.T01:CDS | 55.0% | |
| ! | AGAGACCAGCCTAGCACTGA+GGG | - | Chr2:6861395-6861414 | None:intergenic | 55.0% |
| ! | GGCTTGTTCAGCGAGTTTGG+CGG | - | Chr2:6859944-6859963 | None:intergenic | 55.0% |
| !! | GTCCGCAGGACTTGGCTTTT+CGG | + | Chr2:6860726-6860745 | MsG0280006832.01.T01:intron | 55.0% |
| !! | TCCGCAGGACTTGGCTTTTC+GGG | + | Chr2:6860727-6860746 | MsG0280006832.01.T01:intron | 55.0% |
| ACCCAGTCTGACGGGATGTG+TGG | - | Chr2:6861277-6861296 | None:intergenic | 60.0% | |
| AGTCTGACGGGATGTGTGGG+AGG | - | Chr2:6861273-6861292 | None:intergenic | 60.0% | |
| CCCACACATCCCGTCAGACT+GGG | + | Chr2:6861273-6861292 | MsG0280006832.01.T01:CDS | 60.0% | |
| CCCAGTCTGACGGGATGTGT+GGG | - | Chr2:6861276-6861295 | None:intergenic | 60.0% | |
| GAGCACGTAGGGCTTCTTGG+AGG | + | Chr2:6860150-6860169 | MsG0280006832.01.T01:CDS | 60.0% | |
| GGCTTGTCACCTTGCCAAGC+AGG | + | Chr2:6861443-6861462 | MsG0280006832.01.T01:CDS | 60.0% | |
| TCCCACACATCCCGTCAGAC+TGG | + | Chr2:6861272-6861291 | MsG0280006832.01.T01:CDS | 60.0% | |
| ! | AGACCAGCCTAGCACTGAGG+GGG | - | Chr2:6861393-6861412 | None:intergenic | 60.0% |
| ! | GAGACCAGCCTAGCACTGAG+GGG | - | Chr2:6861394-6861413 | None:intergenic | 60.0% |
| CTCAGCCTCTGCAGCAGTGG+AGG | - | Chr2:6861247-6861266 | None:intergenic | 65.0% | |
| GGAAGCCTCCACTGCTGCAG+AGG | + | Chr2:6861239-6861258 | MsG0280006832.01.T01:intron | 65.0% | |
| GTTGCACCCCCCTCAGTGCT+AGG | + | Chr2:6861383-6861402 | MsG0280006832.01.T01:intron | 65.0% | |
| ! | GACCAGCCTAGCACTGAGGG+GGG | - | Chr2:6861392-6861411 | None:intergenic | 65.0% |
| CACCCCCCTCAGTGCTAGGC+TGG | + | Chr2:6861387-6861406 | MsG0280006832.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 6859743 | 6861626 | 6859743 | ID=MsG0280006832.01;Name=MsG0280006832.01 |
| Chr2 | mRNA | 6859743 | 6861626 | 6859743 | ID=MsG0280006832.01.T01;Parent=MsG0280006832.01;Name=MsG0280006832.01.T01;_AED=0.47;_eAED=0.48;_QI=167|1|0.8|1|1|1|5|0|250 |
| Chr2 | exon | 6859743 | 6859976 | 6859743 | ID=MsG0280006832.01.T01:exon:2861;Parent=MsG0280006832.01.T01 |
| Chr2 | exon | 6860054 | 6860357 | 6860054 | ID=MsG0280006832.01.T01:exon:2862;Parent=MsG0280006832.01.T01 |
| Chr2 | exon | 6860468 | 6860555 | 6860468 | ID=MsG0280006832.01.T01:exon:2863;Parent=MsG0280006832.01.T01 |
| Chr2 | exon | 6861240 | 6861349 | 6861240 | ID=MsG0280006832.01.T01:exon:2864;Parent=MsG0280006832.01.T01 |
| Chr2 | exon | 6861443 | 6861626 | 6861443 | ID=MsG0280006832.01.T01:exon:2865;Parent=MsG0280006832.01.T01 |
| Chr2 | five_prime_UTR | 6859743 | 6859909 | 6859743 | ID=MsG0280006832.01.T01:five_prime_utr;Parent=MsG0280006832.01.T01 |
| Chr2 | CDS | 6859910 | 6859976 | 6859910 | ID=MsG0280006832.01.T01:cds;Parent=MsG0280006832.01.T01 |
| Chr2 | CDS | 6860054 | 6860357 | 6860054 | ID=MsG0280006832.01.T01:cds;Parent=MsG0280006832.01.T01 |
| Chr2 | CDS | 6860468 | 6860555 | 6860468 | ID=MsG0280006832.01.T01:cds;Parent=MsG0280006832.01.T01 |
| Chr2 | CDS | 6861240 | 6861349 | 6861240 | ID=MsG0280006832.01.T01:cds;Parent=MsG0280006832.01.T01 |
| Chr2 | CDS | 6861443 | 6861626 | 6861443 | ID=MsG0280006832.01.T01:cds;Parent=MsG0280006832.01.T01 |
| Gene Sequence |
| Protein sequence |
