AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008764.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008764.01.T01 MTR_2g451510 95.779 308 13 0 38 345 79 386 0.0 614
MsG0280008764.01.T01 MTR_4g116070 68.387 310 96 1 38 345 81 390 6.52e-154 443
MsG0280008764.01.T01 MTR_4g109300 51.961 306 145 2 42 345 71 376 1.01e-111 336
MsG0280008764.01.T01 MTR_4g109300 50.962 312 151 2 36 345 65 376 1.41e-111 335
MsG0280008764.01.T01 MTR_3g023710 51.899 316 146 3 36 345 65 380 1.72e-111 335
MsG0280008764.01.T01 MTR_3g023700 51.592 314 148 2 36 345 65 378 1.61e-110 332
MsG0280008764.01.T01 MTR_3g023690 51.592 314 148 2 36 345 64 377 2.00e-110 332
MsG0280008764.01.T01 MTR_5g043710 50.962 312 149 2 38 345 64 375 2.13e-108 326
MsG0280008764.01.T01 MTR_4g109300 45.954 346 151 3 36 345 65 410 2.18e-104 318
MsG0280008764.01.T01 MTR_4g116040 64.706 204 72 0 125 328 3 206 4.37e-95 286
MsG0280008764.01.T01 MTR_3g023690 53.846 234 104 2 116 345 56 289 2.12e-80 251
MsG0280008764.01.T01 MTR_4g109300 53.043 230 106 2 118 345 2 231 8.74e-80 249
MsG0280008764.01.T01 MTR_8g091920 46.457 127 30 2 143 269 3 91 1.89e-25 103
MsG0280008764.01.T01 MTR_8g091915 66.038 53 18 0 188 240 9 61 8.31e-20 82.4
MsG0280008764.01.T01 MTR_4g116050 64.000 50 18 0 54 103 28 77 4.37e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008764.01.T01 AT5G34940 64.725 309 108 1 38 345 73 381 9.99e-154 443
MsG0280008764.01.T01 AT5G34940 62.903 310 114 1 38 346 73 382 2.85e-150 428
MsG0280008764.01.T01 AT5G34940 67.073 246 80 1 101 345 1 246 1.60e-123 361
MsG0280008764.01.T01 AT5G61250 51.613 310 148 2 38 345 69 378 2.20e-113 340
MsG0280008764.01.T01 AT5G61250 51.613 310 148 2 38 345 69 378 2.20e-113 340
MsG0280008764.01.T01 AT5G61250 51.613 310 148 2 38 345 69 378 2.20e-113 340
MsG0280008764.01.T01 AT5G07830 52.396 313 146 3 36 345 70 382 6.75e-113 339
MsG0280008764.01.T01 AT5G34940 71.329 143 41 0 203 345 2 144 3.12e-74 232

Find 89 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGATGCAACGTGGTTTA+AGG 0.142167 2:-38015187 MsG0280008764.01.T01:CDS
TTTGGATTGAATGCCCTTTA+TGG 0.158147 2:-38015577 MsG0280008764.01.T01:CDS
TTGTATCATTAACAGGTATT+TGG 0.205946 2:-38014421 MsG0280008764.01.T01:intron
ATGCATTTGTGTATAGTTTC+TGG 0.217121 2:-38014681 MsG0280008764.01.T01:intron
TTGCAAGATGAACTGGTATA+TGG 0.282033 2:-38015882 MsG0280008764.01.T01:CDS
GTCTGGATTGGGAAGGAAAT+TGG 0.347707 2:+38014311 None:intergenic
TATTGCAGACAGAGTTTGAT+AGG 0.355616 2:-38014360 MsG0280008764.01.T01:CDS
AGAAACACATCTGCAATGTT+TGG 0.370641 2:-38015822 MsG0280008764.01.T01:CDS
TATGGAAAGTCGGTACATAA+TGG 0.393891 2:-38015559 MsG0280008764.01.T01:CDS
ACAGCATGGGTTGGTGAGTC+AGG 0.398551 2:-38014739 MsG0280008764.01.T01:CDS
ATGTACCGACTTTCCATAAA+GGG 0.407723 2:+38015564 None:intergenic
GCAGATGTGTTTCTAACAAA+AGG 0.408452 2:+38015831 None:intergenic
CCTCCAGGCGCAATGACTAA+TGG 0.413718 2:+38015213 None:intergenic
GAAATTCATGGATGGGAACT+TGG 0.427992 2:-38015466 MsG0280008764.01.T01:intron
AGTTTGATAGGAGGAAACTA+TGG 0.431640 2:-38014348 MsG0280008764.01.T01:CDS
TCACCATTGAAACTGAGATT+AGG 0.436550 2:-38015912 MsG0280008764.01.T01:CDS
TACCTATAGTAGTCTGGATT+GGG 0.447932 2:+38014300 None:intergenic
ACACGACATGTGTCGGTGTC+GGG 0.450360 2:-38016787 MsG0280008764.01.T01:CDS
ATTTAATACCTATAGTAGTC+TGG 0.451269 2:+38014294 None:intergenic
ACACACCACATTTATAGCCT+TGG 0.452398 2:-38015126 MsG0280008764.01.T01:CDS
ATACCTATAGTAGTCTGGAT+TGG 0.458022 2:+38014299 None:intergenic
TCTCAGTTTCAATGGTGAAA+AGG 0.460420 2:+38015917 None:intergenic
TGGCAGTTTGCAAGATGAAC+TGG 0.463605 2:-38015889 MsG0280008764.01.T01:CDS
AGTTCATCCCATCTTGGCAT+TGG 0.469463 2:+38015780 None:intergenic
TGCAAGATGAACTGGTATAT+GGG 0.470523 2:-38015881 MsG0280008764.01.T01:CDS
TCGTTTATTCAATACACTGT+TGG 0.471428 2:-38015499 MsG0280008764.01.T01:CDS
TGATTAAGTTCATCCCATCT+TGG 0.471533 2:+38015774 None:intergenic
TTCCCAATCCAGACTACTAT+AGG 0.475408 2:-38014302 MsG0280008764.01.T01:CDS
ATCTAATAAATCTGTGGATG+TGG 0.485447 2:-38015151 MsG0280008764.01.T01:CDS
CCACCTAATCTCAGTTTCAA+TGG 0.488877 2:+38015909 None:intergenic
TTAAGAAAATCTTGTTGTTG+AGG 0.489628 2:+38016073 None:intergenic
TATGTACCGACTTTCCATAA+AGG 0.490448 2:+38015563 None:intergenic
TTGAATAAACGATTCGGCAT+TGG 0.492524 2:+38015510 None:intergenic
GGAAAGAACTATGAAATTCA+TGG 0.493133 2:-38015478 MsG0280008764.01.T01:CDS
CATCCCATCTTGGCATTGGA+AGG 0.497102 2:+38015784 None:intergenic
CATGGGTTGGTGAGTCAGGA+GGG 0.509443 2:-38014735 MsG0280008764.01.T01:CDS
AGTGTATTGAATAAACGATT+CGG 0.509792 2:+38015504 None:intergenic
TCCTTGGATTAGGCGTGTCC+CGG 0.513095 2:+38016745 None:intergenic
GGTGCCTTCCAATGCCAAGA+TGG 0.519720 2:-38015788 MsG0280008764.01.T01:CDS
AGAGACAAAACTACATTCAA+AGG 0.521273 2:-38014799 MsG0280008764.01.T01:CDS
GACACGACATGTGTCGGTGT+CGG 0.525402 2:-38016788 MsG0280008764.01.T01:CDS
AGAACTATGAAATTCATGGA+TGG 0.527137 2:-38015474 MsG0280008764.01.T01:CDS
GCACGTACACTCCTTGGATT+AGG 0.531717 2:+38016735 None:intergenic
AAGCCATTAGTCATTGCGCC+TGG 0.532443 2:-38015216 MsG0280008764.01.T01:CDS
TTTCTAACAAAAGGAGTGCA+TGG 0.533788 2:+38015840 None:intergenic
TACGACACGTGTTCGACACC+GGG 0.533909 2:-38016763 MsG0280008764.01.T01:CDS
GAACTATGAAATTCATGGAT+GGG 0.542759 2:-38015473 MsG0280008764.01.T01:CDS
TACAAGTGTCGGTGTCGTGA+CGG 0.544346 2:-38016816 MsG0280008764.01.T01:CDS
GTTGCATCAAAGAAACCTCC+AGG 0.545777 2:+38015198 None:intergenic
GGCGCAATGACTAATGGCTT+AGG 0.552752 2:+38015219 None:intergenic
GTGCCTTCCAATGCCAAGAT+GGG 0.557147 2:-38015787 MsG0280008764.01.T01:CDS
TGGCAGGCAATGAATTGAGT+GGG 0.557347 2:-38015335 MsG0280008764.01.T01:intron
TTGTCTCTATCAAGATAGGA+AGG 0.557907 2:+38014814 None:intergenic
ATACGACACGTGTTCGACAC+CGG 0.561475 2:-38016764 MsG0280008764.01.T01:CDS
TCGGCATTGGTGTAGTTCCA+AGG 0.562201 2:+38015523 None:intergenic
TGTCGGTGTCGTGACGGTGT+CGG 0.565582 2:-38016810 MsG0280008764.01.T01:CDS
CACATTTATAGCCTTGGACC+AGG 0.565926 2:-38015120 MsG0280008764.01.T01:intron
GCATGGGTTGGTGAGTCAGG+AGG 0.569855 2:-38014736 MsG0280008764.01.T01:CDS
ATGGGTTGGTGAGTCAGGAG+GGG 0.574317 2:-38014734 MsG0280008764.01.T01:CDS
ACCAACCCATGCTGTTGCTG+AGG 0.580019 2:+38014747 None:intergenic
CAGGAACCTCAGCAACAGCA+TGG 0.580368 2:-38014753 MsG0280008764.01.T01:CDS
ACCTCAGCAACAGCATGGGT+TGG 0.582674 2:-38014748 MsG0280008764.01.T01:CDS
CCATTGAAACTGAGATTAGG+TGG 0.583219 2:-38015909 MsG0280008764.01.T01:CDS
ATGGTTATACAGAAGGACCT+TGG 0.589347 2:-38015540 MsG0280008764.01.T01:CDS
ATGCATCGGATACAAGATGA+TGG 0.592109 2:+38014698 None:intergenic
GGCGAAAAGTACCTGGTCCA+AGG 0.595921 2:+38015109 None:intergenic
GCAATGTTTGGATTCTCACA+AGG 0.596531 2:-38015810 MsG0280008764.01.T01:CDS
TGGATTGGGAAGGAAATTGG+TGG 0.602050 2:+38014314 None:intergenic
ACCGGGACACGCCTAATCCA+AGG 0.602273 2:-38016746 MsG0280008764.01.T01:CDS
GAATGCCCTTTATGGAAAGT+CGG 0.602404 2:-38015569 MsG0280008764.01.T01:CDS
GTACATAATGGTTATACAGA+AGG 0.609586 2:-38015547 MsG0280008764.01.T01:CDS
AAGCAAATCTAATAAATCTG+TGG 0.613723 2:-38015157 MsG0280008764.01.T01:CDS
CTGGCAGGCAATGAATTGAG+TGG 0.614470 2:-38015336 MsG0280008764.01.T01:intron
GAAACTATACACAAATGCAT+CGG 0.619169 2:+38014684 None:intergenic
TGCAGACAGAGTTTGATAGG+AGG 0.621831 2:-38014357 MsG0280008764.01.T01:CDS
AACAGGTATTTGGATCAACT+CGG 0.623593 2:-38014411 MsG0280008764.01.T01:intron
AGGAGTTGATACGCACCTTG+TGG 0.627565 2:-38014851 MsG0280008764.01.T01:CDS
CCATTAGTCATTGCGCCTGG+AGG 0.629727 2:-38015213 MsG0280008764.01.T01:CDS
AGGAACCTCAGCAACAGCAT+GGG 0.631168 2:-38014752 MsG0280008764.01.T01:CDS
CTGGTCCAAGGCTATAAATG+TGG 0.631236 2:+38015121 None:intergenic
CAATGTTTGGATTCTCACAA+GGG 0.640318 2:-38015809 MsG0280008764.01.T01:CDS
ACACATGTAATTACAAGTGT+CGG 0.642765 2:-38016827 MsG0280008764.01.T01:CDS
ACACTTGTAATTACATGTGT+CGG 0.644768 2:+38016830 None:intergenic
GTGTCGGACACGACATGTGT+CGG 0.646500 2:-38016794 MsG0280008764.01.T01:CDS
TATAGTAGTCTGGATTGGGA+AGG 0.650930 2:+38014304 None:intergenic
GGCAGGCAATGAATTGAGTG+GGG 0.653685 2:-38015334 MsG0280008764.01.T01:intron
GAGGTTTCTTTGATGCAACG+TGG 0.664358 2:-38015194 MsG0280008764.01.T01:CDS
TCAGGAGGGGCTTATAACAG+TGG 0.681174 2:-38014721 MsG0280008764.01.T01:CDS
GCAGGCAATGAATTGAGTGG+GGG 0.733139 2:-38015333 MsG0280008764.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATTAATCAATAAATTAAA+TGG + Chr2:38014961-38014980 None:intergenic 10.0%
!! TTATTAATTAATTAACTTCT+TGG - Chr2:38014730-38014749 MsG0280008764.01.T01:CDS 10.0%
!!! TATTGTTATTGTGATAAAAA+TGG - Chr2:38015127-38015146 MsG0280008764.01.T01:CDS 15.0%
!! ATTGTTAAACTGTTTATGTT+AGG - Chr2:38015529-38015548 MsG0280008764.01.T01:CDS 20.0%
!! TTGTTAAACTGTTTATGTTA+GGG - Chr2:38015530-38015549 MsG0280008764.01.T01:CDS 20.0%
!!! AAAAATGTTATTGAAAGTAC+AGG - Chr2:38016369-38016388 MsG0280008764.01.T01:intron 20.0%
!!! AGAAATAATTGATGATTTGA+AGG + Chr2:38016246-38016265 None:intergenic 20.0%
!!! TACTTTCAATAACATTTTTC+AGG + Chr2:38016368-38016387 None:intergenic 20.0%
! AAGCAAATCTAATAAATCTG+TGG - Chr2:38015984-38016003 MsG0280008764.01.T01:intron 25.0%
! AATAAAATTCTTCTTGCCTA+AGG - Chr2:38015750-38015769 MsG0280008764.01.T01:intron 25.0%
! AATCATTTCTTCCAAAAATC+AGG - Chr2:38015385-38015404 MsG0280008764.01.T01:intron 25.0%
! AGTGTATTGAATAAACGATT+CGG + Chr2:38015640-38015659 None:intergenic 25.0%
! ATCATTTCTTCCAAAAATCA+GGG - Chr2:38015386-38015405 MsG0280008764.01.T01:intron 25.0%
! TATCACAATAACAATAGAGA+TGG + Chr2:38015123-38015142 None:intergenic 25.0%
! TGTATGATTGTATCATTAAC+AGG - Chr2:38016713-38016732 MsG0280008764.01.T01:intron 25.0%
! TTCAGTGTAATTACAAATGT+CGG - Chr2:38014840-38014859 MsG0280008764.01.T01:CDS 25.0%
! TTGTATCATTAACAGGTATT+TGG - Chr2:38016720-38016739 MsG0280008764.01.T01:intron 25.0%
!! ATTTTCTTAAATGCAGTGAA+AGG - Chr2:38015081-38015100 MsG0280008764.01.T01:intron 25.0%
!!! AAATCTTGTGCATTTTTTCA+AGG - Chr2:38015003-38015022 MsG0280008764.01.T01:intron 25.0%
!!! ATCTTGTTTTCTACAAACAA+TGG + Chr2:38014606-38014625 None:intergenic 25.0%
!!! TCTTGTTTTCTACAAACAAT+GGG + Chr2:38014605-38014624 None:intergenic 25.0%
!!! TTAAGAAAATCTTGTTGTTG+AGG + Chr2:38015071-38015090 None:intergenic 25.0%
!!! TTTTTATTTGCAGATTAGCT+TGG + Chr2:38014529-38014548 None:intergenic 25.0%
ACACATGTAATTACAAGTGT+CGG - Chr2:38014314-38014333 MsG0280008764.01.T01:CDS 30.0%
ACACTTGTAATTACATGTGT+CGG + Chr2:38014314-38014333 None:intergenic 30.0%
AGAACTATGAAATTCATGGA+TGG - Chr2:38015667-38015686 MsG0280008764.01.T01:intron 30.0%
AGAGACAAAACTACATTCAA+AGG - Chr2:38016342-38016361 MsG0280008764.01.T01:intron 30.0%
ATCTAATAAATCTGTGGATG+TGG - Chr2:38015990-38016009 MsG0280008764.01.T01:intron 30.0%
ATGCATTTGTGTATAGTTTC+TGG - Chr2:38016460-38016479 MsG0280008764.01.T01:intron 30.0%
CAGTGTTAAACTACTTTACA+CGG + Chr2:38016130-38016149 None:intergenic 30.0%
CCAAAAATCAGGGTAAAATT+TGG - Chr2:38015396-38015415 MsG0280008764.01.T01:intron 30.0%
CCTTGATTTAGACTCATTTA+GGG - Chr2:38016504-38016523 MsG0280008764.01.T01:intron 30.0%
CTTGATTTAGACTCATTTAG+GGG - Chr2:38016505-38016524 MsG0280008764.01.T01:intron 30.0%
GAAACTATACACAAATGCAT+CGG + Chr2:38016460-38016479 None:intergenic 30.0%
GAACTATGAAATTCATGGAT+GGG - Chr2:38015668-38015687 MsG0280008764.01.T01:intron 30.0%
GGAAAGAACTATGAAATTCA+TGG - Chr2:38015663-38015682 MsG0280008764.01.T01:intron 30.0%
GTAATGAATATCAGCCAATT+CGG + Chr2:38016056-38016075 None:intergenic 30.0%
GTACATAATGGTTATACAGA+AGG - Chr2:38015594-38015613 MsG0280008764.01.T01:intron 30.0%
TCCTTGATTTAGACTCATTT+AGG - Chr2:38016503-38016522 MsG0280008764.01.T01:intron 30.0%
TCGTTTATTCAATACACTGT+TGG - Chr2:38015642-38015661 MsG0280008764.01.T01:intron 30.0%
TTGAATGTAACCACATGTAT+TGG + Chr2:38016604-38016623 None:intergenic 30.0%
! ATAATAATCCTGTTTTCTGC+AGG - Chr2:38014692-38014711 MsG0280008764.01.T01:CDS 30.0%
! CCAAATTTTACCCTGATTTT+TGG + Chr2:38015399-38015418 None:intergenic 30.0%
! GTTAGGGCTAAGATTATTTT+TGG - Chr2:38015546-38015565 MsG0280008764.01.T01:CDS 30.0%
! TAATAATCCTGTTTTCTGCA+GGG - Chr2:38014693-38014712 MsG0280008764.01.T01:CDS 30.0%
!! ACTTAATTTGTCTTCTACAC+AGG - Chr2:38016270-38016289 MsG0280008764.01.T01:intron 30.0%
!! AGTTTTGTCTCTATCAAGAT+AGG + Chr2:38016334-38016353 None:intergenic 30.0%
!! TAATTTTGATCTATGAAGCG+CGG - Chr2:38014762-38014781 MsG0280008764.01.T01:CDS 30.0%
!! TGTTTTCGAAATGTTGTTTG+AGG - Chr2:38014482-38014501 MsG0280008764.01.T01:intron 30.0%
!!! AAGTTCTTTATTTTGCCACA+TGG + Chr2:38016178-38016197 None:intergenic 30.0%
!!! CAGAACATTGTTGCTTTTTA+TGG + Chr2:38014555-38014574 None:intergenic 30.0%
!!! GATTCAGAATTTTTTCCACA+AGG + Chr2:38016308-38016327 None:intergenic 30.0%
AACAGGTATTTGGATCAACT+CGG - Chr2:38016730-38016749 MsG0280008764.01.T01:intron 35.0%
AGAAACACATCTGCAATGTT+TGG - Chr2:38015319-38015338 MsG0280008764.01.T01:CDS 35.0%
AGATCAAAACCTATGAAGCA+CGG + Chr2:38014929-38014948 None:intergenic 35.0%
AGTTTGATAGGAGGAAACTA+TGG - Chr2:38016793-38016812 MsG0280008764.01.T01:CDS 35.0%
ATACCTATAGTAGTCTGGAT+TGG + Chr2:38016845-38016864 None:intergenic 35.0%
CAATGTTTGGATTCTCACAA+GGG - Chr2:38015332-38015351 MsG0280008764.01.T01:CDS 35.0%
CCCTAAATGAGTCTAAATCA+AGG + Chr2:38016507-38016526 None:intergenic 35.0%
GAGTCTAAATCAAGGATCAA+GGG + Chr2:38016499-38016518 None:intergenic 35.0%
TACCTATAGTAGTCTGGATT+GGG + Chr2:38016844-38016863 None:intergenic 35.0%
TATGGAAAGTCGGTACATAA+TGG - Chr2:38015582-38015601 MsG0280008764.01.T01:CDS 35.0%
TATTGCAGACAGAGTTTGAT+AGG - Chr2:38016781-38016800 MsG0280008764.01.T01:CDS 35.0%
TCACCATTGAAACTGAGATT+AGG - Chr2:38015229-38015248 MsG0280008764.01.T01:CDS 35.0%
TCTCAGTTTCAATGGTGAAA+AGG + Chr2:38015227-38015246 None:intergenic 35.0%
TGAGTCTAAATCAAGGATCA+AGG + Chr2:38016500-38016519 None:intergenic 35.0%
TGATTAAGTTCATCCCATCT+TGG + Chr2:38015370-38015389 None:intergenic 35.0%
TGCAAGATGAACTGGTATAT+GGG - Chr2:38015260-38015279 MsG0280008764.01.T01:CDS 35.0%
TTGAGGTTTGAATGCATGTT+GGG - Chr2:38014499-38014518 MsG0280008764.01.T01:intron 35.0%
TTGCAAGATGAACTGGTATA+TGG - Chr2:38015259-38015278 MsG0280008764.01.T01:CDS 35.0%
TTGTCTCTATCAAGATAGGA+AGG + Chr2:38016330-38016349 None:intergenic 35.0%
TTTGGATTGAATGCCCTTTA+TGG - Chr2:38015564-38015583 MsG0280008764.01.T01:CDS 35.0%
! ACTTTAGATTGAAGGCATGT+CGG - Chr2:38016552-38016571 MsG0280008764.01.T01:intron 35.0%
! ATGCCTTCAATCTAAAGTGT+CGG + Chr2:38016550-38016569 None:intergenic 35.0%
! GCAGATGTGTTTCTAACAAA+AGG + Chr2:38015313-38015332 None:intergenic 35.0%
! TTAGTCCTCTATTTTCCATG+TGG - Chr2:38016160-38016179 MsG0280008764.01.T01:intron 35.0%
! TTGAATAAACGATTCGGCAT+TGG + Chr2:38015634-38015653 None:intergenic 35.0%
! TTTCTAACAAAAGGAGTGCA+TGG + Chr2:38015304-38015323 None:intergenic 35.0%
! TTTGAGGTTTGAATGCATGT+TGG - Chr2:38014498-38014517 MsG0280008764.01.T01:intron 35.0%
! TTTTGCCACATGGAAAATAG+AGG + Chr2:38016168-38016187 None:intergenic 35.0%
!! ATGTACCGACTTTCCATAAA+GGG + Chr2:38015580-38015599 None:intergenic 35.0%
!! TATGTACCGACTTTCCATAA+AGG + Chr2:38015581-38015600 None:intergenic 35.0%
!!! TTTTTTTTTTCATCTCGCGC+AGG - Chr2:38015044-38015063 MsG0280008764.01.T01:intron 35.0%
ACACACCACATTTATAGCCT+TGG - Chr2:38016015-38016034 MsG0280008764.01.T01:intron 40.0%
ACACCGACACTTTAGATTGA+AGG - Chr2:38016544-38016563 MsG0280008764.01.T01:intron 40.0%
ACTCAATGTACTCAAGCCTT+AGG + Chr2:38015769-38015788 None:intergenic 40.0%
ATGCATCGGATACAAGATGA+TGG + Chr2:38016446-38016465 None:intergenic 40.0%
ATGGTTATACAGAAGGACCT+TGG - Chr2:38015601-38015620 MsG0280008764.01.T01:intron 40.0%
CAATAAACCCTGCAGAAAAC+AGG + Chr2:38014703-38014722 None:intergenic 40.0%
CCACCTAATCTCAGTTTCAA+TGG + Chr2:38015235-38015254 None:intergenic 40.0%
CCATTGAAACTGAGATTAGG+TGG - Chr2:38015232-38015251 MsG0280008764.01.T01:CDS 40.0%
CTTTGATGCAACGTGGTTTA+AGG - Chr2:38015954-38015973 MsG0280008764.01.T01:intron 40.0%
GAAATTCATGGATGGGAACT+TGG - Chr2:38015675-38015694 MsG0280008764.01.T01:intron 40.0%
GAATGCCCTTTATGGAAAGT+CGG - Chr2:38015572-38015591 MsG0280008764.01.T01:CDS 40.0%
GCAATGTTTGGATTCTCACA+AGG - Chr2:38015331-38015350 MsG0280008764.01.T01:CDS 40.0%
GCATAGTTTACAAGTCCAGA+AGG + Chr2:38015494-38015513 None:intergenic 40.0%
GTATCTAACGCCAATACATG+TGG - Chr2:38016591-38016610 MsG0280008764.01.T01:intron 40.0%
GTCGACACTGCTAATAATCT+GGG - Chr2:38014801-38014820 MsG0280008764.01.T01:CDS 40.0%
TCGACACTGCTAATAATCTG+GGG - Chr2:38014802-38014821 MsG0280008764.01.T01:CDS 40.0%
TTCCCAATCCAGACTACTAT+AGG - Chr2:38016839-38016858 MsG0280008764.01.T01:CDS 40.0%
! CGTGAGTGTTTTGTGACTAA+TGG - Chr2:38015463-38015482 MsG0280008764.01.T01:intron 40.0%
! TATAGTAGTCTGGATTGGGA+AGG + Chr2:38016840-38016859 None:intergenic 40.0%
AGTTCATCCCATCTTGGCAT+TGG + Chr2:38015364-38015383 None:intergenic 45.0%
ATTCATTGCCTGCCAGTGAA+AGG + Chr2:38015801-38015820 None:intergenic 45.0%
CGTCGACACTGCTAATAATC+TGG - Chr2:38014800-38014819 MsG0280008764.01.T01:CDS 45.0%
CTGGTCCAAGGCTATAAATG+TGG + Chr2:38016023-38016042 None:intergenic 45.0%
GAGGTTTCTTTGATGCAACG+TGG - Chr2:38015947-38015966 MsG0280008764.01.T01:intron 45.0%
GTTGCATCAAAGAAACCTCC+AGG + Chr2:38015946-38015965 None:intergenic 45.0%
TATGAAGCACGTACACTCCT+TGG + Chr2:38014415-38014434 None:intergenic 45.0%
TCTGTTCTGTCACTGTTGTG+TGG + Chr2:38014642-38014661 None:intergenic 45.0%
TGCAGACAGAGTTTGATAGG+AGG - Chr2:38016784-38016803 MsG0280008764.01.T01:CDS 45.0%
TGGCAGGCAATGAATTGAGT+GGG - Chr2:38015806-38015825 MsG0280008764.01.T01:CDS 45.0%
TGGCAGTTTGCAAGATGAAC+TGG - Chr2:38015252-38015271 MsG0280008764.01.T01:CDS 45.0%
! CACATTTATAGCCTTGGACC+AGG - Chr2:38016021-38016040 MsG0280008764.01.T01:intron 45.0%
! GTCTGGATTGGGAAGGAAAT+TGG + Chr2:38016833-38016852 None:intergenic 45.0%
! TGGATTGGGAAGGAAATTGG+TGG + Chr2:38016830-38016849 None:intergenic 45.0%
!! ATCGGTGTTGTTTCCAGTGT+CGG - Chr2:38016647-38016666 MsG0280008764.01.T01:intron 45.0%
!! TGACTAATGGATTCGCCTTC+TGG - Chr2:38015476-38015495 MsG0280008764.01.T01:CDS 45.0%
!!! TTCATTTTTAAAATTATTAT+CGG - Chr2:38016629-38016648 MsG0280008764.01.T01:intron 5.0%
AAGCCATTAGTCATTGCGCC+TGG - Chr2:38015925-38015944 MsG0280008764.01.T01:intron 50.0%
AGGAACCTCAGCAACAGCAT+GGG - Chr2:38016389-38016408 MsG0280008764.01.T01:intron 50.0%
AGTGAGCTAGCTCCTTTCAC+TGG - Chr2:38015786-38015805 MsG0280008764.01.T01:CDS 50.0%
ATACGACACGTGTTCGACAC+CGG - Chr2:38014377-38014396 MsG0280008764.01.T01:CDS 50.0%
CTGGCAGGCAATGAATTGAG+TGG - Chr2:38015805-38015824 MsG0280008764.01.T01:CDS 50.0%
GCACGTACACTCCTTGGATT+AGG + Chr2:38014409-38014428 None:intergenic 50.0%
GCAGGCAATGAATTGAGTGG+GGG - Chr2:38015808-38015827 MsG0280008764.01.T01:CDS 50.0%
GGCAGGCAATGAATTGAGTG+GGG - Chr2:38015807-38015826 MsG0280008764.01.T01:CDS 50.0%
GGCGCAATGACTAATGGCTT+AGG + Chr2:38015925-38015944 None:intergenic 50.0%
GTGCCTTCCAATGCCAAGAT+GGG - Chr2:38015354-38015373 MsG0280008764.01.T01:intron 50.0%
TATGAAGCACGGACACTCCT+CGG + Chr2:38014918-38014937 None:intergenic 50.0%
TCAGGAGGGGCTTATAACAG+TGG - Chr2:38016420-38016439 MsG0280008764.01.T01:intron 50.0%
TGATCTATGAAGCGCGGACA+CGG - Chr2:38014768-38014787 MsG0280008764.01.T01:CDS 50.0%
! CATCCCATCTTGGCATTGGA+AGG + Chr2:38015360-38015379 None:intergenic 50.0%
! CCAGGTACTTTTCGCCGAAT+TGG - Chr2:38016039-38016058 MsG0280008764.01.T01:intron 50.0%
! TGTCGGTGTTCGACACTTGT+TGG - Chr2:38016569-38016588 MsG0280008764.01.T01:intron 50.0%
!! AGGAGTTGATACGCACCTTG+TGG - Chr2:38016290-38016309 MsG0280008764.01.T01:intron 50.0%
!! CCAATTCGGCGAAAAGTACC+TGG + Chr2:38016042-38016061 None:intergenic 50.0%
!! TACAAGTGTCGGTGTCGTGA+CGG - Chr2:38014325-38014344 MsG0280008764.01.T01:CDS 50.0%
!! TCGGCATTGGTGTAGTTCCA+AGG + Chr2:38015621-38015640 None:intergenic 50.0%
!! TGTCGGTGTCATGTCGATGT+CGG - Chr2:38014857-38014876 MsG0280008764.01.T01:intron 50.0%
ACCAACCCATGCTGTTGCTG+AGG + Chr2:38016397-38016416 None:intergenic 55.0%
ACCTCAGCAACAGCATGGGT+TGG - Chr2:38016393-38016412 MsG0280008764.01.T01:intron 55.0%
AGCTAGCTCCTTTCACTGGC+AGG - Chr2:38015790-38015809 MsG0280008764.01.T01:CDS 55.0%
ATGAAGCACGGACACTCCTC+GGG + Chr2:38014917-38014936 None:intergenic 55.0%
CAGGAACCTCAGCAACAGCA+TGG - Chr2:38016388-38016407 MsG0280008764.01.T01:intron 55.0%
CCATTAGTCATTGCGCCTGG+AGG - Chr2:38015928-38015947 MsG0280008764.01.T01:intron 55.0%
CCTCCAGGCGCAATGACTAA+TGG + Chr2:38015931-38015950 None:intergenic 55.0%
GAATTGAGTGGGGGTGGAGT+TGG - Chr2:38015817-38015836 MsG0280008764.01.T01:CDS 55.0%
GGCAATGAATTGAGTGGGGG+TGG - Chr2:38015811-38015830 MsG0280008764.01.T01:CDS 55.0%
GGTGCCTTCCAATGCCAAGA+TGG - Chr2:38015353-38015372 MsG0280008764.01.T01:intron 55.0%
GTGTCGGACACGACATGTGT+CGG - Chr2:38014347-38014366 MsG0280008764.01.T01:CDS 55.0%
TACGACACGTGTTCGACACC+GGG - Chr2:38014378-38014397 MsG0280008764.01.T01:CDS 55.0%
TGTAGCACAGACACCGACAC+TGG + Chr2:38016663-38016682 None:intergenic 55.0%
! ACACGACATGTGTCGGTGTC+GGG - Chr2:38014354-38014373 MsG0280008764.01.T01:CDS 55.0%
! GACACGACATGTGTCGGTGT+CGG - Chr2:38014353-38014372 MsG0280008764.01.T01:CDS 55.0%
! TCCTTGGATTAGGCGTGTCC+CGG + Chr2:38014399-38014418 None:intergenic 55.0%
!! ACAGCATGGGTTGGTGAGTC+AGG - Chr2:38016402-38016421 MsG0280008764.01.T01:intron 55.0%
!! ATGGGTTGGTGAGTCAGGAG+GGG - Chr2:38016407-38016426 MsG0280008764.01.T01:intron 55.0%
!! CATGGGTTGGTGAGTCAGGA+GGG - Chr2:38016406-38016425 MsG0280008764.01.T01:intron 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG - Chr2:38014917-38014936 MsG0280008764.01.T01:intron 55.0%
!! GGCGAAAAGTACCTGGTCCA+AGG + Chr2:38016035-38016054 None:intergenic 55.0%
ACACGACACGTGTCCGACAC+CGG - Chr2:38014880-38014899 MsG0280008764.01.T01:intron 60.0%
ACCGGGACACGCCTAATCCA+AGG - Chr2:38014395-38014414 MsG0280008764.01.T01:CDS 60.0%
!! GCATGGGTTGGTGAGTCAGG+AGG - Chr2:38016405-38016424 MsG0280008764.01.T01:intron 60.0%
!! TGTCGGTGTCGTGACGGTGT+CGG - Chr2:38014331-38014350 MsG0280008764.01.T01:CDS 60.0%
CACGACACGTGTCCGACACC+GGG - Chr2:38014881-38014900 MsG0280008764.01.T01:intron 65.0%
GCACGGACACTCCTCGGGTT+AGG + Chr2:38014912-38014931 None:intergenic 65.0%
GGTTAGGCGTGTCCCGGTGT+CGG + Chr2:38014896-38014915 None:intergenic 65.0%
GTATGCACTCGCGTGAGCGC+AGG - Chr2:38015434-38015453 MsG0280008764.01.T01:intron 65.0%
! TCCTCGGGTTAGGCGTGTCC+CGG + Chr2:38014902-38014921 None:intergenic 65.0%
ACCGGGACACGCCTAACCCG+AGG - Chr2:38014898-38014917 MsG0280008764.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 38014296 38016867 38014296 ID=MsG0280008764.01;Name=MsG0280008764.01
Chr2 mRNA 38014296 38016867 38014296 ID=MsG0280008764.01.T01;Parent=MsG0280008764.01;Name=MsG0280008764.01.T01;_AED=0.46;_eAED=0.53;_QI=0|0.83|0.71|1|0.66|0.57|7|0|347
Chr2 exon 38016745 38016867 38016745 ID=MsG0280008764.01.T01:exon:33207;Parent=MsG0280008764.01.T01
Chr2 exon 38016061 38016097 38016061 ID=MsG0280008764.01.T01:exon:33206;Parent=MsG0280008764.01.T01
Chr2 exon 38015756 38015939 38015756 ID=MsG0280008764.01.T01:exon:33205;Parent=MsG0280008764.01.T01
Chr2 exon 38015467 38015612 38015467 ID=MsG0280008764.01.T01:exon:33204;Parent=MsG0280008764.01.T01
Chr2 exon 38015121 38015351 38015121 ID=MsG0280008764.01.T01:exon:33203;Parent=MsG0280008764.01.T01
Chr2 exon 38014682 38014871 38014682 ID=MsG0280008764.01.T01:exon:33202;Parent=MsG0280008764.01.T01
Chr2 exon 38014296 38014428 38014296 ID=MsG0280008764.01.T01:exon:33201;Parent=MsG0280008764.01.T01
Chr2 CDS 38016745 38016867 38016745 ID=MsG0280008764.01.T01:cds;Parent=MsG0280008764.01.T01
Chr2 CDS 38016061 38016097 38016061 ID=MsG0280008764.01.T01:cds;Parent=MsG0280008764.01.T01
Chr2 CDS 38015756 38015939 38015756 ID=MsG0280008764.01.T01:cds;Parent=MsG0280008764.01.T01
Chr2 CDS 38015467 38015612 38015467 ID=MsG0280008764.01.T01:cds;Parent=MsG0280008764.01.T01
Chr2 CDS 38015121 38015351 38015121 ID=MsG0280008764.01.T01:cds;Parent=MsG0280008764.01.T01
Chr2 CDS 38014682 38014871 38014682 ID=MsG0280008764.01.T01:cds;Parent=MsG0280008764.01.T01
Chr2 CDS 38014296 38014428 38014296 ID=MsG0280008764.01.T01:cds;Parent=MsG0280008764.01.T01
Gene Sequence

>MsG0280008764.01.T01

ATGGACACTGACACGCCGACACATGTAATTACAAGTGTCGGTGTCGTGACGGTGTCGGACACGACATGTGTCGGTGTCGGGATACGACACGTGTTCGACACCGGGACACGCCTAATCCAAGGAGACCTCAACAACAAGATTTTCTTAAATGCAGTGAAAGCCTTTTCACCATTGAAACTGAGATTAGGTGGCAGTTTGCAAGATGAACTGGTATATGGGACTGATGATTACAACAAACCATGCACTCCTTTTGTTAGAAACACATCTGCAATGTTTGGATTCTCACAAGGGTGCCTTCCAATGCCAAGATGGGATGAACTTAATCATTTCTTCCAAAAATCAGGGGCTAAGATTATTTTTGGATTGAATGCCCTTTATGGAAAGTCGGTACATAATGGTTATACAGAAGGACCTTGGAACTACACCAATGCCGAATCGTTTATTCAATACACTGTTGGAAAGAACTATGAAATTCATGGATGGGAACTTGGCAATGAATTGAGTGGGGGTGGAGTTGGAACAAGTGTCTCTGTAGATCAATATGCTTCTGATGTTATTGCTTTAAGAGACGTAGTTCACAATGCATATAAAGACGTTGAACCTAAGCCATTAGTCATTGCGCCTGGAGGTTTCTTTGATGCAACGTGGTTTAAGGATTTTATAAGCAAATCTAATAAATCTGTGGATGTGGTCACACACCACATTTATAGCCTTGGACCAGGAGTTGATACGCACCTTGTGGAAAAAATTCTGAATCCTTCCTATCTTGATAGAGACAAAACTACATTCAAAGGCCTGAAAAATGTTATTGAAAGTACAGGAACCTCAGCAACAGCATGGGTTGGTGAGTCAGGAGGGGCTTATAACAGTGGCCATCATCTTGTATCCGATGCATTTGTGTATAGTTTCTGGTATTTGGATCAACTCGGTATGTCTGCTTCTTATGACACTAAAACTTATTGCAGACAGAGTTTGATAGGAGGAAACTATGGTTTACTCAATACCACCAATTTCCTTCCCAATCCAGACTACTATAGGTATTAA

Protein sequence

>MsG0280008764.01.T01

MDTDTPTHVITSVGVVTVSDTTCVGVGIRHVFDTGTRLIQGDLNNKIFLNAVKAFSPLKLRLGGSLQDELVYGTDDYNKPCTPFVRNTSAMFGFSQGCLPMPRWDELNHFFQKSGAKIIFGLNALYGKSVHNGYTEGPWNYTNAESFIQYTVGKNYEIHGWELGNELSGGGVGTSVSVDQYASDVIALRDVVHNAYKDVEPKPLVIAPGGFFDATWFKDFISKSNKSVDVVTHHIYSLGPGVDTHLVEKILNPSYLDRDKTTFKGLKNVIESTGTSATAWVGESGGAYNSGHHLVSDAFVYSFWYLDQLGMSASYDTKTYCRQSLIGGNYGLLNTTNFLPNPDYYRY*