AlfalfaGEDB | MsG0180000155.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000155.01

KEGG: K15449
GO: GO:0003824
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000155.01.T01	KEH40136.1	72.881	118	3	2	1	89	162	279	8.86E-27	119
MsG0180000155.01.T01	KEH40136.1	83.333	60	10	0	194	253	446	505	2.47E-19	98.6
MsG0180000155.01.T01	KEH40136.1	100	40	0	0	156	195	280	319	1.23E-18	96.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000155.01.T01	Q8RXN5	75	64	9	2	147	210	278	334	1.10E-21	97.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000155.01.T01	A0A1E5WAJ1	39.184	245	67	10	1	213	170	364	7.62e-32	133

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048298.01	MsG0180000155.01	0.821607	3.690814e-53	3.016817e-50
MsG0080048383.01	MsG0180000155.01	0.804990	1.656318e-49	8.662659e-47
MsG0080048687.01	MsG0180000155.01	0.812067	5.107451e-51	3.214948e-48
MsG0080048787.01	MsG0180000155.01	0.805490	1.301654e-49	6.895671e-47
MsG0080048855.01	MsG0180000155.01	0.830942	2.210573e-55	2.363847e-52
MsG0180000142.01	MsG0180000155.01	0.832694	8.166279e-56	9.197781e-53
MsG0180000144.01	MsG0180000155.01	0.879031	1.736034e-69	9.269004e-66
MsG0180000146.01	MsG0180000155.01	0.822076	2.873846e-53	2.380564e-50
MsG0180000155.01	MsG0180000205.01	0.813836	2.092363e-51	1.381193e-48
MsG0180000155.01	MsG0180000209.01	0.817373	3.409772e-52	2.478844e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000155.01.T01	MTR_1g022235	72.881	118	3	2	1	89	162	279	1.07e-30	119
MsG0180000155.01.T01	MTR_1g022235	83.333	60	10	0	194	253	446	505	2.99e-23	98.6
MsG0180000155.01.T01	MTR_1g022235	100.000	40	0	0	156	195	280	319	1.49e-22	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000155.01.T01	AT1G75200	75.000	64	9	2	147	210	278	334	1.12e-22	97.1
MsG0180000155.01.T01	AT1G75200	42.623	122	34	5	1	89	165	283	4.76e-12	65.9

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Find 65 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGAGATGATTCCGTTGGG+GGG	0.632436	1:+2150959	MsG0180000155.01.T01:CDS
AAGATTATTGGTTCACACAG+TGG	0.629945	1:+2151825	MsG0180000155.01.T01:CDS
AAGTCACAGCTTCGAGGTCG+AGG	0.539284	1:+2151870	MsG0180000155.01.T01:CDS
ACCAAATTTGCTCTAATAAC+AGG	0.278071	1:-2151257	None:intergenic
ACTAGCGGTATCGATAACGG+CGG	0.827485	1:-2153321	None:intergenic
AGAGTCTGATGAGGAGGAAG+AGG	0.501593	1:+2151118	MsG0180000155.01.T01:CDS
AGAGTCTTATCTATCTGATG+TGG	0.538695	1:-2151649	None:intergenic
AGATGTTGATGGTGGTGAGG+TGG	0.442621	1:+2150982	MsG0180000155.01.T01:CDS
AGCACCTTCGAGGAAGCTGG+TGG	0.676170	1:+2151181	MsG0180000155.01.T01:CDS
AGCACTAGCGGTATCGATAA+CGG	0.543591	1:-2153324	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTATTTGACGAGGGTT+TGG	+	Chr1:2153171-2153190	MsG0180000155.01.T01:intron	30.0%
AACTAAGCGATATATGAGAT+TGG	-	Chr1:2151351-2151370	None:intergenic	30.0%
AATACTGAAAGGTTTGATGA+TGG	+	Chr1:2151042-2151061	MsG0180000155.01.T01:intron	30.0%
AGAGAATAGTCCTTACAATA+AGG	+	Chr1:2153080-2153099	MsG0180000155.01.T01:intron	30.0%
ATGCACACTTTCATAAAGTA+GGG	+	Chr1:2152669-2152688	MsG0180000155.01.T01:intron	30.0%
ATGCTCAAAATTATTTGACG+AGG	+	Chr1:2153165-2153184	MsG0180000155.01.T01:intron	30.0%
ATTTCCAACAACAGATAAGT+TGG	+	Chr1:2153140-2153159	MsG0180000155.01.T01:intron	30.0%
ATTTCCAACTTATCTGTTGT+TGG	-	Chr1:2153147-2153166	None:intergenic	30.0%
CAATTGACATGTTGAAATTG+GGG	-	Chr1:2151740-2151759	None:intergenic	30.0%
GAAGAAATAGAGAATTATCC+TGG	+	Chr1:2153201-2153220	MsG0180000155.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	2150941	2153490	2150941	ID=MsG0180000155.01;Name=MsG0180000155.01
Chr1	mRNA	2150941	2153490	2150941	ID=MsG0180000155.01.T01;Parent=MsG0180000155.01;Name=MsG0180000155.01.T01;_AED=0.49;_eAED=0.74;_QI=0\|0\|0.16\|1\|1\|1\|6\|0\|253
Chr1	exon	2150941	2151009	2150941	ID=MsG0180000155.01.T01:exon:6840;Parent=MsG0180000155.01.T01
Chr1	exon	2151089	2151286	2151089	ID=MsG0180000155.01.T01:exon:6839;Parent=MsG0180000155.01.T01
Chr1	exon	2151408	2151504	2151408	ID=MsG0180000155.01.T01:exon:6838;Parent=MsG0180000155.01.T01
Chr1	exon	2151620	2151720	2151620	ID=MsG0180000155.01.T01:exon:6837;Parent=MsG0180000155.01.T01
Chr1	exon	2151819	2151934	2151819	ID=MsG0180000155.01.T01:exon:6836;Parent=MsG0180000155.01.T01
Chr1	exon	2153310	2153490	2153310	ID=MsG0180000155.01.T01:exon:6835;Parent=MsG0180000155.01.T01
Chr1	CDS	2150941	2151009	2150941	ID=MsG0180000155.01.T01:cds;Parent=MsG0180000155.01.T01
Chr1	CDS	2151089	2151286	2151089	ID=MsG0180000155.01.T01:cds;Parent=MsG0180000155.01.T01
Chr1	CDS	2151408	2151504	2151408	ID=MsG0180000155.01.T01:cds;Parent=MsG0180000155.01.T01
Chr1	CDS	2151620	2151720	2151620	ID=MsG0180000155.01.T01:cds;Parent=MsG0180000155.01.T01
Chr1	CDS	2151819	2151934	2151819	ID=MsG0180000155.01.T01:cds;Parent=MsG0180000155.01.T01
Chr1	CDS	2153310	2153490	2153310	ID=MsG0180000155.01.T01:cds;Parent=MsG0180000155.01.T01

Gene Sequence

>MsG0180000155.01.T01

ATGAAGGCGTTGGGTGGTAACGAGATGATTCCGTTGGGGGGAGATGTTGATGGTGGTGAGGTGGATGAGGAAAGCGGTGTTTTGAGTTCTGATGAAGAAGAGTCTGATGAGGAGGAAGAGGCGGAGTCGGAGATTGTTGATCTTGAAGATATTGCCGGTAAAGCACCTTCGAGGAAGCTGGTGGCTACGGTGAAGGAGAGTAATGGGAAGTTGAATGGAAAGAAAGAAATGGTGACTCCTGTTATTAGAGCAAATTTGGTGAAGCAGAAGAGCTATTGTGATTTTGGTATCATAGTGATATTGCTTGCTTACTTGGTACTTGTTTGGCATCACCGTGAGTTTGTCCGAATTATGATGACCCACGTTTTTGTCATATTGGGAAAAACCCAAGTCCCACATCAGATAGATAAGACTCTTGATAAGAGTTTATATAGAGGAGCAATCCTCACCTTACAAGCCGGTTTTGGTTATAAGATTATTGGTTCACACAGTGGTGTCAAGATTTGTAGATGGACTAAGTCACAGCTTCGAGGTCGAGGTGGTTGCTACAAGCATTCATTTTACGGAATTGAGAGTCATAGATGCACCAACACCGCCGTTATCGATACCGCTAGTGCTTCAATGTCTAACTCCAACGAATCAACGGAGACCGTGGCTGTGAGAGAGAAGCTGATGCATGATCTGAAAATCGCCGCGGATAGAATGGAAGACACGATTTTGAGAGAAGAAGGAAGAATATACAAAAACTCTTTGAAGTCGTAG

Protein sequence

>MsG0180000155.01.T01

MKALGGNEMIPLGGDVDGGEVDEESGVLSSDEEESDEEEEAESEIVDLEDIAGKAPSRKLVATVKESNGKLNGKKEMVTPVIRANLVKQKSYCDFGIIVILLAYLVLVWHHREFVRIMMTHVFVILGKTQVPHQIDKTLDKSLYRGAILTLQAGFGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCTNTAVIDTASASMSNSNESTETVAVREKLMHDLKIAADRMEDTILREEGRIYKNSLKS*