Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003094.01.T01 | XP_013467739.1 | 99.451 | 364 | 2 | 0 | 1 | 364 | 1 | 364 | 0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003094.01.T01 | A0A072VJK1 | 99.451 | 364 | 2 | 0 | 1 | 364 | 1 | 364 | 0.0 | 756 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048152.01 | MsG0180003094.01 | 0.804983 | 1.662286e-49 | 8.692322e-47 |
| MsG0080048784.01 | MsG0180003094.01 | 0.809374 | 1.952534e-50 | 1.144484e-47 |
| MsG0180000139.01 | MsG0180003094.01 | 0.814096 | 1.833007e-51 | 1.218568e-48 |
| MsG0180000145.01 | MsG0180003094.01 | 0.807549 | 4.786800e-50 | 2.673850e-47 |
| MsG0180000334.01 | MsG0180003094.01 | 0.803954 | 2.724552e-49 | 1.387489e-46 |
| MsG0180000835.01 | MsG0180003094.01 | 0.805306 | 1.422762e-49 | 7.501517e-47 |
| MsG0180000836.01 | MsG0180003094.01 | 0.806958 | 6.388153e-50 | 3.513959e-47 |
| MsG0180001892.01 | MsG0180003094.01 | 0.818135 | 2.294983e-52 | 1.703587e-49 |
| MsG0180003094.01 | MsG0180003371.01 | 0.816636 | 4.994343e-52 | 3.558010e-49 |
| MsG0180003094.01 | MsG0180003493.01 | 0.830190 | 3.376073e-55 | 3.531778e-52 |
| MsG0180003094.01 | MsG0180003548.01 | 0.812930 | 3.309222e-51 | 2.131403e-48 |
| MsG0180003094.01 | MsG0180003572.01 | 0.809383 | 1.944227e-50 | 1.139886e-47 |
| MsG0180003094.01 | MsG0180003651.01 | 0.812394 | 4.334083e-51 | 2.752615e-48 |
| MsG0180003094.01 | MsG0180003741.01 | 0.801039 | 1.086389e-48 | 5.136593e-46 |
| MsG0180003094.01 | MsG0180003920.01 | 0.801364 | 9.325684e-49 | 4.445385e-46 |
| MsG0180003094.01 | MsG0180003922.01 | 0.805798 | 1.121497e-49 | 5.988656e-47 |
| MsG0180003094.01 | MsG0180003932.01 | 0.803867 | 2.840381e-49 | 1.443252e-46 |
| MsG0180003094.01 | MsG0180003951.01 | 0.801464 | 8.894536e-49 | 4.250429e-46 |
| MsG0180003094.01 | MsG0180004754.01 | 0.828323 | 9.581103e-55 | 9.490937e-52 |
| MsG0180003094.01 | MsG0180004854.01 | 0.818162 | 2.262991e-52 | 1.681085e-49 |
| MsG0180003094.01 | MsG0180005049.01 | 0.841864 | 3.668168e-58 | 5.462206e-55 |
| MsG0180003094.01 | MsG0180005153.01 | 0.834274 | 3.295736e-56 | 3.892083e-53 |
| MsG0180003094.01 | MsG0180005169.01 | 0.802244 | 6.151950e-49 | 2.998654e-46 |
| MsG0180003094.01 | MsG0180005530.01 | 0.809724 | 1.642464e-50 | 9.717429e-48 |
| MsG0180003094.01 | MsG0180005531.01 | 0.814743 | 1.318635e-51 | 8.920944e-49 |
| MsG0180003094.01 | MsG0180005575.01 | 0.845530 | 3.833575e-59 | 6.407647e-56 |
| MsG0180003094.01 | MsG0180005746.01 | 0.809096 | 2.240149e-50 | 1.303329e-47 |
| MsG0180003094.01 | MsG0180005962.01 | -0.813146 | 2.967335e-51 | 1.922317e-48 |
| MsG0180003094.01 | MsG0180006017.01 | 0.803911 | 2.781441e-49 | 1.414913e-46 |
| MsG0180003094.01 | MsG0180006024.01 | 0.831985 | 1.223518e-55 | 1.349484e-52 |
| MsG0180003094.01 | MsG0180006224.01 | 0.800695 | 1.277396e-48 | 5.986700e-46 |
| MsG0180003094.01 | MsG0280006993.01 | 0.823312 | 1.482311e-53 | 1.271747e-50 |
| MsG0180003094.01 | MsG0280007067.01 | 0.806884 | 6.622873e-50 | 3.636159e-47 |
| MsG0180003094.01 | MsG0280007226.01 | 0.807053 | 6.098280e-50 | 3.362828e-47 |
| MsG0180003094.01 | MsG0280007452.01 | 0.829204 | 5.865675e-55 | 5.963068e-52 |
| MsG0180003094.01 | MsG0280007506.01 | 0.822698 | 2.061002e-53 | 1.737911e-50 |
| MsG0180003094.01 | MsG0280007527.01 | 0.827440 | 1.562985e-54 | 1.509083e-51 |
| MsG0180003094.01 | MsG0280007955.01 | 0.820669 | 6.070104e-53 | 4.833448e-50 |
| MsG0180003094.01 | MsG0280008457.01 | 0.803314 | 3.698045e-49 | 1.852381e-46 |
| MsG0180003094.01 | MsG0280008614.01 | 0.824976 | 6.026609e-54 | 5.421650e-51 |
| MsG0180003094.01 | MsG0280008764.01 | 0.841530 | 4.494720e-58 | 6.623317e-55 |
| MsG0180003094.01 | MsG0280008909.01 | 0.824666 | 7.131376e-54 | 6.359289e-51 |
| MsG0180003094.01 | MsG0280009794.01 | 0.848705 | 5.168737e-60 | 9.568541e-57 |
| MsG0180003094.01 | MsG0280010489.01 | 0.823050 | 1.706044e-53 | 1.453066e-50 |
| MsG0180003094.01 | MsG0280010778.01 | 0.808321 | 3.279483e-50 | 1.869488e-47 |
| MsG0180003094.01 | MsG0280010788.01 | 0.832935 | 7.116500e-56 | 8.073035e-53 |
| MsG0180003094.01 | MsG0280010907.01 | 0.815771 | 7.793055e-52 | 5.422621e-49 |
| MsG0180003094.01 | MsG0280011014.01 | 0.828990 | 6.611123e-55 | 6.677061e-52 |
| MsG0180003094.01 | MsG0280011065.01 | 0.830092 | 3.568537e-55 | 3.721990e-52 |
| MsG0180003094.01 | MsG0280011319.01 | 0.805616 | 1.224684e-49 | 6.508909e-47 |
| MsG0180003094.01 | MsG0280011339.01 | 0.816063 | 6.707805e-52 | 4.704768e-49 |
| MsG0180003094.01 | MsG0280011388.01 | 0.816251 | 6.089450e-52 | 4.293002e-49 |
| MsG0180003094.01 | MsG0380011581.01 | 0.808772 | 2.628512e-50 | 1.515983e-47 |
| MsG0180003094.01 | MsG0380013183.01 | 0.811414 | 7.087023e-51 | 4.384158e-48 |
| MsG0180003094.01 | MsG0380013641.01 | 0.843922 | 1.040266e-58 | 1.652660e-55 |
| MsG0180003094.01 | MsG0380014778.01 | 0.816092 | 6.608029e-52 | 4.638349e-49 |
| MsG0180003094.01 | MsG0380014875.01 | 0.800460 | 1.426694e-48 | 6.646541e-46 |
| MsG0180003094.01 | MsG0380015332.01 | 0.815338 | 9.729872e-52 | 6.689991e-49 |
| MsG0180003094.01 | MsG0380015435.01 | 0.815477 | 9.061797e-52 | 6.254819e-49 |
| MsG0180003094.01 | MsG0380015944.01 | 0.845649 | 3.559020e-59 | 5.972102e-56 |
| MsG0180003094.01 | MsG0380016005.01 | 0.816469 | 5.442042e-52 | 3.859261e-49 |
| MsG0180003094.01 | MsG0380016126.01 | 0.829786 | 4.236059e-55 | 4.380414e-52 |
| MsG0180003094.01 | MsG0380016247.01 | 0.840544 | 8.156054e-58 | 1.165621e-54 |
| MsG0180003094.01 | MsG0380016505.01 | 0.805314 | 1.417141e-49 | 7.473596e-47 |
| MsG0180003094.01 | MsG0380016671.01 | 0.803387 | 3.571117e-49 | 1.792190e-46 |
| MsG0180003094.01 | MsG0380016970.01 | 0.821057 | 4.943290e-53 | 3.979708e-50 |
| MsG0180003094.01 | MsG0480018278.01 | 0.840597 | 7.900068e-58 | 1.130830e-54 |
| MsG0180003094.01 | MsG0480018313.01 | 0.810139 | 1.337491e-50 | 7.998995e-48 |
| MsG0180003094.01 | MsG0480018894.01 | 0.829337 | 5.445955e-55 | 5.558214e-52 |
| MsG0180003094.01 | MsG0480019350.01 | 0.818442 | 1.956334e-52 | 1.464676e-49 |
| MsG0180003094.01 | MsG0480020675.01 | 0.813187 | 2.906532e-51 | 1.885022e-48 |
| MsG0180003094.01 | MsG0480020780.01 | 0.845464 | 3.994900e-59 | 6.663207e-56 |
| MsG0180003094.01 | MsG0480020879.01 | 0.812986 | 3.216652e-51 | 2.074942e-48 |
| MsG0180003094.01 | MsG0480021037.01 | 0.812632 | 3.844202e-51 | 2.456821e-48 |
| MsG0180003094.01 | MsG0480021056.01 | 0.851928 | 6.448498e-61 | 1.325504e-57 |
| MsG0180003094.01 | MsG0480021195.01 | 0.816389 | 5.670688e-52 | 4.012759e-49 |
| MsG0180003094.01 | MsG0480022054.01 | 0.825835 | 3.774558e-54 | 3.479680e-51 |
| MsG0180003094.01 | MsG0480022855.01 | 0.812245 | 4.671909e-51 | 2.955195e-48 |
| MsG0180003094.01 | MsG0480023172.01 | 0.832473 | 9.267148e-56 | 1.036880e-52 |
| MsG0180003094.01 | MsG0480023221.01 | 0.825827 | 3.791418e-54 | 3.494375e-51 |
| MsG0180003094.01 | MsG0480023463.01 | 0.835591 | 1.535274e-56 | 1.885945e-53 |
| MsG0180003094.01 | MsG0580024197.01 | 0.804636 | 1.964143e-49 | 1.017886e-46 |
| MsG0180003094.01 | MsG0580025131.01 | 0.831262 | 1.844636e-55 | 1.991135e-52 |
| MsG0180003094.01 | MsG0580025332.01 | 0.820489 | 6.675579e-53 | 5.289481e-50 |
| MsG0180003094.01 | MsG0580025587.01 | 0.802350 | 5.849722e-49 | 2.859178e-46 |
| MsG0180003094.01 | MsG0580025814.01 | 0.821328 | 4.279968e-53 | 3.471449e-50 |
| MsG0180003094.01 | MsG0580026059.01 | 0.822271 | 2.589504e-53 | 2.157171e-50 |
| MsG0180003094.01 | MsG0580027431.01 | 0.816446 | 5.506234e-52 | 3.902239e-49 |
| MsG0180003094.01 | MsG0580027925.01 | 0.840429 | 8.742377e-58 | 1.244933e-54 |
| MsG0180003094.01 | MsG0580028436.01 | 0.807532 | 4.826623e-50 | 2.694945e-47 |
| MsG0180003094.01 | MsG0580028897.01 | 0.814497 | 1.494958e-51 | 1.004755e-48 |
| MsG0180003094.01 | MsG0580029127.01 | 0.864710 | 9.994465e-65 | 3.168491e-61 |
| MsG0180003094.01 | MsG0580029729.01 | 0.804751 | 1.858895e-49 | 9.662768e-47 |
| MsG0180003094.01 | MsG0580029736.01 | 0.831449 | 1.658510e-55 | 1.800473e-52 |
| MsG0180003094.01 | MsG0680030447.01 | 0.806832 | 6.792255e-50 | 3.724114e-47 |
| MsG0180003094.01 | MsG0680030865.01 | 0.848018 | 8.005345e-60 | 1.449208e-56 |
| MsG0180003094.01 | MsG0680031431.01 | 0.824642 | 7.225740e-54 | 6.438766e-51 |
| MsG0180003094.01 | MsG0680031628.01 | 0.843902 | 1.052754e-58 | 1.671516e-55 |
| MsG0180003094.01 | MsG0680035888.01 | 0.831434 | 1.672726e-55 | 1.814957e-52 |
| MsG0180003094.01 | MsG0780036757.01 | 0.825341 | 4.942849e-54 | 4.492906e-51 |
| MsG0180003094.01 | MsG0780037054.01 | 0.802818 | 4.684295e-49 | 2.317049e-46 |
| MsG0180003094.01 | MsG0780037093.01 | 0.846560 | 2.011922e-59 | 3.476660e-56 |
| MsG0180003094.01 | MsG0780037240.01 | 0.813253 | 2.810987e-51 | 1.826352e-48 |
| MsG0180003094.01 | MsG0780038603.01 | 0.826173 | 3.137522e-54 | 2.920334e-51 |
| MsG0180003094.01 | MsG0780039170.01 | 0.820504 | 6.624612e-53 | 5.251165e-50 |
| MsG0180003094.01 | MsG0780039443.01 | 0.805199 | 1.497934e-49 | 7.876415e-47 |
| MsG0180003094.01 | MsG0780040529.01 | 0.805776 | 1.133638e-49 | 6.050143e-47 |
| MsG0180003094.01 | MsG0780040926.01 | 0.817736 | 2.824519e-52 | 2.073917e-49 |
| MsG0180003094.01 | MsG0780041016.01 | 0.835338 | 1.778981e-56 | 2.169137e-53 |
| MsG0180003094.01 | MsG0780041259.01 | 0.819465 | 1.145048e-52 | 8.818410e-50 |
| MsG0180003094.01 | MsG0780041268.01 | 0.811182 | 7.954709e-51 | 4.890935e-48 |
| MsG0180003094.01 | MsG0780041440.01 | 0.835652 | 1.481262e-56 | 1.822960e-53 |
| MsG0180003094.01 | MsG0780041584.01 | 0.806698 | 7.248295e-50 | 3.960388e-47 |
| MsG0180003094.01 | MsG0780041699.01 | 0.834823 | 2.398314e-56 | 2.879094e-53 |
| MsG0180003094.01 | MsG0880042091.01 | 0.832706 | 8.110888e-56 | 9.138709e-53 |
| MsG0180003094.01 | MsG0880042311.01 | 0.820705 | 5.954744e-53 | 4.746633e-50 |
| MsG0180003094.01 | MsG0880042520.01 | 0.800371 | 1.487073e-48 | 6.912751e-46 |
| MsG0180003094.01 | MsG0880042544.01 | 0.842205 | 2.981702e-58 | 4.487547e-55 |
| MsG0180003094.01 | MsG0880042760.01 | 0.830112 | 3.526855e-55 | 3.681007e-52 |
| MsG0180003094.01 | MsG0880042795.01 | 0.807562 | 4.758295e-50 | 2.658738e-47 |
| MsG0180003094.01 | MsG0880042991.01 | 0.804239 | 2.376934e-49 | 1.219233e-46 |
| MsG0180003094.01 | MsG0880044555.01 | 0.811168 | 8.013453e-51 | 4.924979e-48 |
| MsG0180003094.01 | MsG0880044782.01 | 0.833861 | 4.181024e-56 | 4.876776e-53 |
| MsG0180003094.01 | MsG0880045145.01 | 0.805218 | 1.484542e-49 | 7.809663e-47 |
| MsG0180003094.01 | MsG0880045294.01 | 0.829651 | 4.568574e-55 | 4.705208e-52 |
| MsG0180003094.01 | MsG0880045483.01 | 0.806253 | 8.999455e-50 | 4.861856e-47 |
| MsG0180003094.01 | MsG0880047473.01 | 0.809276 | 2.050262e-50 | 1.198584e-47 |
| MsG0180003094.01 | MsG0880047513.01 | 0.800609 | 1.330084e-48 | 6.220122e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003094.01.T01 | MTR_1g054670 | 99.451 | 364 | 2 | 0 | 1 | 364 | 1 | 364 | 0.0 | 756 |
| MsG0180003094.01.T01 | MTR_6g445110 | 47.411 | 367 | 167 | 7 | 4 | 347 | 17 | 380 | 1.16e-112 | 333 |
| MsG0180003094.01.T01 | MTR_1g106875 | 48.045 | 358 | 162 | 7 | 4 | 347 | 74 | 421 | 2.31e-112 | 335 |
| MsG0180003094.01.T01 | MTR_1g018620 | 52.885 | 312 | 133 | 4 | 48 | 347 | 111 | 420 | 2.58e-111 | 333 |
| MsG0180003094.01.T01 | MTR_3g102670 | 48.000 | 300 | 144 | 4 | 60 | 348 | 93 | 391 | 1.09e-99 | 301 |
| MsG0180003094.01.T01 | MTR_3g069720 | 43.072 | 332 | 154 | 5 | 48 | 350 | 63 | 388 | 1.72e-90 | 279 |
| MsG0180003094.01.T01 | MTR_5g081550 | 41.615 | 322 | 164 | 5 | 50 | 350 | 58 | 376 | 9.27e-85 | 263 |
| MsG0180003094.01.T01 | MTR_1g022075 | 40.810 | 321 | 173 | 5 | 40 | 350 | 55 | 368 | 7.90e-75 | 236 |
| MsG0180003094.01.T01 | MTR_5g019880 | 40.523 | 306 | 172 | 4 | 50 | 347 | 72 | 375 | 4.35e-71 | 227 |
| MsG0180003094.01.T01 | MTR_3g111790 | 36.950 | 341 | 193 | 7 | 28 | 350 | 41 | 377 | 7.30e-70 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003094.01.T01 | AT5G06610 | 61.281 | 359 | 132 | 5 | 1 | 354 | 1 | 357 | 3.67e-157 | 446 |
| MsG0180003094.01.T01 | AT3G19540 | 49.544 | 329 | 146 | 5 | 37 | 347 | 108 | 434 | 6.50e-113 | 338 |
| MsG0180003094.01.T01 | AT1G27690 | 47.671 | 365 | 172 | 5 | 4 | 350 | 49 | 412 | 8.63e-112 | 333 |
| MsG0180003094.01.T01 | AT1G49840 | 46.685 | 362 | 170 | 8 | 4 | 347 | 86 | 442 | 1.89e-108 | 327 |
| MsG0180003094.01.T01 | AT1G79420 | 42.931 | 389 | 174 | 8 | 4 | 350 | 20 | 402 | 3.61e-100 | 303 |
| MsG0180003094.01.T01 | AT5G05840 | 43.558 | 326 | 157 | 5 | 48 | 349 | 66 | 388 | 3.90e-92 | 283 |
| MsG0180003094.01.T01 | AT5G66740 | 40.483 | 331 | 180 | 6 | 32 | 347 | 38 | 366 | 4.89e-74 | 234 |
| MsG0180003094.01.T01 | AT3G55720 | 39.339 | 333 | 165 | 7 | 48 | 347 | 62 | 390 | 1.30e-70 | 227 |
| MsG0180003094.01.T01 | AT1G75160 | 40.193 | 311 | 168 | 8 | 55 | 350 | 87 | 394 | 1.35e-66 | 216 |
Find 88 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATGGAACTTCAGAAAA+AGG | 0.220805 | 1:-56461581 | MsG0180003094.01.T01:CDS |
| ACCTCATTGAGGGGTGATTT+AGG | 0.222575 | 1:+56462471 | None:intergenic |
| AAAATGCTTCTTAGTGTTCT+TGG | 0.223207 | 1:-56462522 | MsG0180003094.01.T01:CDS |
| TTGATAGGTTCTTCTGATAA+TGG | 0.264140 | 1:+56462663 | None:intergenic |
| TCCTCTTCGCCGTGCACTTC+AGG | 0.275448 | 1:-56461411 | MsG0180003094.01.T01:intron |
| ATGATAAAGCATGCTATCTT+TGG | 0.286269 | 1:-56460577 | MsG0180003094.01.T01:CDS |
| TCTGCACGGCTTGAAGGATT+AGG | 0.293324 | 1:-56460067 | MsG0180003094.01.T01:three_prime_UTR |
| ATCTCTATCTGCCAATTATC+AGG | 0.310067 | 1:+56461533 | None:intergenic |
| GTCGGTGGTGGTGGTGTTAA+TGG | 0.312645 | 1:-56461596 | MsG0180003094.01.T01:CDS |
| TAGGGACAAATCCTACATAT+TGG | 0.324957 | 1:-56460486 | MsG0180003094.01.T01:CDS |
| TCGTGTTCTGCACGGCTTGA+AGG | 0.346419 | 1:-56460073 | MsG0180003094.01.T01:three_prime_UTR |
| GGCAAATGGTTCCTGATAAT+TGG | 0.359506 | 1:-56461544 | MsG0180003094.01.T01:CDS |
| CTGCACGGCTTGAAGGATTA+GGG | 0.363278 | 1:-56460066 | MsG0180003094.01.T01:three_prime_UTR |
| TTGACAAGGATTCAAGCAAT+AGG | 0.367414 | 1:-56460505 | MsG0180003094.01.T01:CDS |
| AGGGGTGATTTAGGATGAAT+AGG | 0.373094 | 1:+56462480 | None:intergenic |
| CTCGGTGTGCACGCTGCTAA+AGG | 0.374472 | 1:-56461443 | MsG0180003094.01.T01:CDS |
| GTCCACAACAACATCTTGAT+TGG | 0.384230 | 1:-56460237 | MsG0180003094.01.T01:CDS |
| CAACAATTCACAGCTGCAAC+AGG | 0.388041 | 1:-56461701 | MsG0180003094.01.T01:CDS |
| TACTACCAGCAAGAACCTTT+TGG | 0.394205 | 1:+56461498 | None:intergenic |
| AGGGACAAATCCTACATATT+GGG | 0.397990 | 1:-56460485 | MsG0180003094.01.T01:CDS |
| TGACAAGGATTCAAGCAATA+GGG | 0.405287 | 1:-56460504 | MsG0180003094.01.T01:CDS |
| TGTTGTCGCTTCGTTCGATT+AGG | 0.414182 | 1:+56460608 | None:intergenic |
| TCAAAATATAACTCTAAGAA+AGG | 0.430604 | 1:-56462618 | MsG0180003094.01.T01:CDS |
| ATTGTTGTTTCCCAATATGT+AGG | 0.441158 | 1:+56460475 | None:intergenic |
| GGTGGCCAAAAGGTTCTTGC+TGG | 0.442056 | 1:-56461503 | MsG0180003094.01.T01:CDS |
| AAGGTTTGGTGATAATCTTA+AGG | 0.444872 | 1:-56460374 | MsG0180003094.01.T01:CDS |
| TACTTAACATGTATAATGAA+TGG | 0.446313 | 1:-56459999 | MsG0180003094.01.T01:three_prime_UTR |
| CTTGGATCGGTCGGTGGTGG+TGG | 0.446484 | 1:-56461605 | MsG0180003094.01.T01:CDS |
| GTGAAGAATGTGTTTGCAAC+CGG | 0.450494 | 1:-56461656 | MsG0180003094.01.T01:CDS |
| AGGATGGACCTGCTATTACT+AGG | 0.461843 | 1:-56460354 | MsG0180003094.01.T01:CDS |
| GCCTATTCTCGTGTTCTGCA+CGG | 0.465809 | 1:-56460081 | MsG0180003094.01.T01:three_prime_UTR |
| AGTTATGGATGAATTGGAGT+TGG | 0.469771 | 1:-56462590 | MsG0180003094.01.T01:CDS |
| AAAACTCTCAGCCGATCAAA+AGG | 0.469817 | 1:-56460632 | MsG0180003094.01.T01:CDS |
| TGATTGTTTCTTACCACCTC+AGG | 0.473945 | 1:-56460275 | MsG0180003094.01.T01:CDS |
| GCCGTGCAGAACACGAGAAT+AGG | 0.477761 | 1:+56460080 | None:intergenic |
| GATTGTTGTTGGTGGCCAAA+AGG | 0.485888 | 1:-56461513 | MsG0180003094.01.T01:CDS |
| TGGCGTCACACACCTTGGCT+CGG | 0.492783 | 1:-56461461 | MsG0180003094.01.T01:CDS |
| GAGCTTGGATCGGTCGGTGG+TGG | 0.494261 | 1:-56461608 | MsG0180003094.01.T01:CDS |
| ATGGTTGTCGTGGACGAGCT+TGG | 0.495724 | 1:-56461623 | MsG0180003094.01.T01:CDS |
| GATTTAGGATGAATAGGAAC+AGG | 0.498652 | 1:+56462486 | None:intergenic |
| ATACAGCTGATACTGCTAAA+GGG | 0.506311 | 1:+56460713 | None:intergenic |
| GAAGACTATAGAGATGTTGA+TGG | 0.506980 | 1:-56460439 | MsG0180003094.01.T01:CDS |
| TGCAACAGGGTGTAGGAAGT+TGG | 0.515412 | 1:-56461687 | MsG0180003094.01.T01:CDS |
| GATGTTGCATTTAATGTTCA+AGG | 0.515683 | 1:-56460307 | MsG0180003094.01.T01:CDS |
| GTAGTAACGGCACTATTGCT+TGG | 0.521284 | 1:-56461481 | MsG0180003094.01.T01:CDS |
| AAAAGAACTTACCTCATTGA+GGG | 0.521839 | 1:+56462461 | None:intergenic |
| TTTGGTGATAATCTTAAGGA+TGG | 0.522450 | 1:-56460370 | MsG0180003094.01.T01:CDS |
| AATACAGCTGATACTGCTAA+AGG | 0.523894 | 1:+56460712 | None:intergenic |
| TGGCAGATAGAGATTGTTGT+TGG | 0.528000 | 1:-56461524 | MsG0180003094.01.T01:CDS |
| TCTGTTACAGGTTTCGTCAT+CGG | 0.528049 | 1:-56461738 | MsG0180003094.01.T01:intron |
| GGTGTTATGATTGCACATGC+TGG | 0.531989 | 1:-56460418 | MsG0180003094.01.T01:CDS |
| GATAGCATGCTTTATCATCT+CGG | 0.533661 | 1:+56460582 | None:intergenic |
| CAGATAGAGATTGTTGTTGG+TGG | 0.537302 | 1:-56461521 | MsG0180003094.01.T01:CDS |
| TTTCAAGCTTAGATATGGGT+AGG | 0.539926 | 1:-56462692 | None:intergenic |
| TGGACCTGCTATTACTAGGT+TGG | 0.544281 | 1:-56460350 | MsG0180003094.01.T01:CDS |
| AAGGTTCTTGCTGGTAGTAA+CGG | 0.544977 | 1:-56461494 | MsG0180003094.01.T01:CDS |
| AAGGATTAGGGTTGTGCACA+AGG | 0.545241 | 1:-56460054 | MsG0180003094.01.T01:three_prime_UTR |
| ATTCAGTGCAGCACAGCACA+TGG | 0.562606 | 1:-56460692 | MsG0180003094.01.T01:CDS |
| ACTGTGATGATAACAAGGTT+TGG | 0.564007 | 1:-56460388 | MsG0180003094.01.T01:CDS |
| TTGCTTGGCGTCACACACCT+TGG | 0.565443 | 1:-56461466 | MsG0180003094.01.T01:CDS |
| TCTTCCAACCTAGTAATAGC+AGG | 0.565502 | 1:+56460346 | None:intergenic |
| TTACTAGGTTGGAAGAGTCA+TGG | 0.572091 | 1:-56460339 | MsG0180003094.01.T01:CDS |
| CAATCTTTGTTAAGTTCCTG+AGG | 0.573721 | 1:+56460259 | None:intergenic |
| TGTCGTGGACGAGCTTGGAT+CGG | 0.576957 | 1:-56461618 | MsG0180003094.01.T01:CDS |
| GCAGCGTGCACACCGAGCCA+AGG | 0.577284 | 1:+56461449 | None:intergenic |
| GTGGACGAGCTTGGATCGGT+CGG | 0.581244 | 1:-56461614 | MsG0180003094.01.T01:CDS |
| ACCTGAAGTGCACGGCGAAG+AGG | 0.581794 | 1:+56461410 | None:intergenic |
| AACAGGGTGTAGGAAGTTGG+AGG | 0.584583 | 1:-56461684 | MsG0180003094.01.T01:CDS |
| CAACAACTGTGATGATAACA+AGG | 0.586246 | 1:-56460393 | MsG0180003094.01.T01:CDS |
| TTCAGTGCAGCACAGCACAT+GGG | 0.587648 | 1:-56460691 | MsG0180003094.01.T01:CDS |
| ATGTTGCATTTAATGTTCAA+GGG | 0.590841 | 1:-56460306 | MsG0180003094.01.T01:CDS |
| TCACAGCTGCAACAGGGTGT+AGG | 0.606606 | 1:-56461694 | MsG0180003094.01.T01:CDS |
| AAAAGTGACAATGGTTGTCG+TGG | 0.609256 | 1:-56461633 | MsG0180003094.01.T01:CDS |
| GACGAGCTTGGATCGGTCGG+TGG | 0.615008 | 1:-56461611 | MsG0180003094.01.T01:CDS |
| TAGAGGACTCTTATTTGACA+AGG | 0.615017 | 1:-56460519 | MsG0180003094.01.T01:CDS |
| TCTTTGTTAAGTTCCTGAGG+TGG | 0.615936 | 1:+56460262 | None:intergenic |
| TCAGTGCAGCACAGCACATG+GGG | 0.622785 | 1:-56460690 | MsG0180003094.01.T01:CDS |
| TCCTAAATCACCCCTCAATG+AGG | 0.627312 | 1:-56462472 | MsG0180003094.01.T01:intron |
| CTCCAATCAAGATGTTGTTG+TGG | 0.628883 | 1:+56460235 | None:intergenic |
| ACAGGGTGTAGGAAGTTGGA+GGG | 0.647737 | 1:-56461683 | MsG0180003094.01.T01:CDS |
| AACAATTCACAGCTGCAACA+GGG | 0.653620 | 1:-56461700 | MsG0180003094.01.T01:CDS |
| AAAGAACTTACCTCATTGAG+GGG | 0.670876 | 1:+56462462 | None:intergenic |
| AATCGAACGAAGCGACAACA+CGG | 0.675120 | 1:-56460605 | MsG0180003094.01.T01:CDS |
| ATGAACTTACCTGAAGTGCA+CGG | 0.677574 | 1:+56461402 | None:intergenic |
| GGTGTGCACGCTGCTAAAGG+CGG | 0.678174 | 1:-56461440 | MsG0180003094.01.T01:CDS |
| TGCAACCGGAAAAGTGACAA+TGG | 0.685929 | 1:-56461642 | MsG0180003094.01.T01:CDS |
| CAGGGTGTAGGAAGTTGGAG+GGG | 0.733318 | 1:-56461682 | MsG0180003094.01.T01:CDS |
| CAGTGCAGCACAGCACATGG+GGG | 0.743406 | 1:-56460689 | MsG0180003094.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACATTAATATTAAAAG+GGG | + | Chr1:56460846-56460865 | None:intergenic | 10.0% |
| !! | TCATATATAAAAATAATTCA+TGG | - | Chr1:56462484-56462503 | MsG0180003094.01.T01:CDS | 10.0% |
| !!! | TAGTGTTATTTTATATAAAT+CGG | + | Chr1:56462649-56462668 | None:intergenic | 10.0% |
| !! | ATAGTTGAATGAAATTTATT+AGG | + | Chr1:56461762-56461781 | None:intergenic | 15.0% |
| !! | ATTTAGCAATATACTAAAAA+TGG | + | Chr1:56460449-56460468 | None:intergenic | 15.0% |
| !! | CATAAAAATAAAAATTTGCA+TGG | + | Chr1:56460277-56460296 | None:intergenic | 15.0% |
| !! | TAGTTGAATGAAATTTATTA+GGG | + | Chr1:56461761-56461780 | None:intergenic | 15.0% |
| !!! | ACAATTAATGTTTGTTTTTA+AGG | + | Chr1:56461917-56461936 | None:intergenic | 15.0% |
| !!! | AGTGTTATTTTATATAAATC+GGG | + | Chr1:56462648-56462667 | None:intergenic | 15.0% |
| !!! | ATATTGCTAAATATTTTTGT+CGG | - | Chr1:56460457-56460476 | MsG0180003094.01.T01:CDS | 15.0% |
| !!! | CTTTTTTAAACTTTTTAACT+AGG | - | Chr1:56462512-56462531 | MsG0180003094.01.T01:CDS | 15.0% |
| !! | AAAATAAAGATCACTGAAAA+AGG | + | Chr1:56460908-56460927 | None:intergenic | 20.0% |
| !! | GAAAAAATGCTTCTAATTAT+TGG | - | Chr1:56460577-56460596 | MsG0180003094.01.T01:CDS | 20.0% |
| !! | TAAAACATGAGTTCAAATTT+GGG | + | Chr1:56460531-56460550 | None:intergenic | 20.0% |
| !! | TACTTAACATGTATAATGAA+TGG | - | Chr1:56462674-56462693 | MsG0180003094.01.T01:CDS | 20.0% |
| !! | TTAAAACATGAGTTCAAATT+TGG | + | Chr1:56460532-56460551 | None:intergenic | 20.0% |
| !! | TTAGAAGTTTATCAAATCAT+AGG | + | Chr1:56461850-56461869 | None:intergenic | 20.0% |
| !!! | AAGCATTTTTTCTTTACTTT+TGG | + | Chr1:56460569-56460588 | None:intergenic | 20.0% |
| !!! | AATTGTAGTTTTGATATGTA+GGG | - | Chr1:56461931-56461950 | MsG0180003094.01.T01:intron | 20.0% |
| !!! | ATTTTGAATGTGATTGATTT+TGG | - | Chr1:56461306-56461325 | MsG0180003094.01.T01:intron | 20.0% |
| !!! | TAATTGTAGTTTTGATATGT+AGG | - | Chr1:56461930-56461949 | MsG0180003094.01.T01:intron | 20.0% |
| !!! | TCAAAATATAACTCTAAGAA+AGG | - | Chr1:56460055-56460074 | MsG0180003094.01.T01:three_prime_UTR | 20.0% |
| !!! | TTAAACTTTTTAACTAGGTT+TGG | - | Chr1:56462517-56462536 | MsG0180003094.01.T01:CDS | 20.0% |
| !!! | TTTTTTCTTTACTTTTGGTT+TGG | + | Chr1:56460564-56460583 | None:intergenic | 20.0% |
| ! | ACACATGCTTTATATTTAGT+TGG | - | Chr1:56461492-56461511 | MsG0180003094.01.T01:CDS | 25.0% |
| ! | AGAAAAAGACAAGAAAGTTT+AGG | + | Chr1:56461801-56461820 | None:intergenic | 25.0% |
| ! | ATGTTGCATTTAATGTTCAA+GGG | - | Chr1:56462367-56462386 | MsG0180003094.01.T01:intron | 25.0% |
| ! | CTAAATATAAAGCATGTGTT+TGG | + | Chr1:56461491-56461510 | None:intergenic | 25.0% |
| ! | GATAATGTGTTATGAACATA+TGG | - | Chr1:56461537-56461556 | MsG0180003094.01.T01:CDS | 25.0% |
| ! | GATCAAACTTTACATATACA+TGG | + | Chr1:56460886-56460905 | None:intergenic | 25.0% |
| ! | TATAGACACAAAATCAATTC+TGG | - | Chr1:56461455-56461474 | MsG0180003094.01.T01:CDS | 25.0% |
| ! | TCACATTCAAAATCAAGTTT+AGG | + | Chr1:56461299-56461318 | None:intergenic | 25.0% |
| ! | TTAATGGAACTTCAGAAAAA+GGG | - | Chr1:56461093-56461112 | MsG0180003094.01.T01:intron | 25.0% |
| ! | TTACATATACATGGTAACAT+TGG | + | Chr1:56460877-56460896 | None:intergenic | 25.0% |
| !! | ATTTTGTTACAATCTGTTAC+AGG | - | Chr1:56460923-56460942 | MsG0180003094.01.T01:intron | 25.0% |
| !! | CTTTCATTTTCTTCATTGAT+AGG | + | Chr1:56460028-56460047 | None:intergenic | 25.0% |
| !! | TGTTCTTTGTTGATTGAAAA+TGG | - | Chr1:56460726-56460745 | MsG0180003094.01.T01:intron | 25.0% |
| !!! | ACTTTTAGCTAACTTTTTCA+AGG | + | Chr1:56460762-56460781 | None:intergenic | 25.0% |
| !!! | AGAATTGATTTTGTGTCTAT+AGG | + | Chr1:56461456-56461475 | None:intergenic | 25.0% |
| !!! | AGCTAAAAGTGTTCAAATTT+AGG | - | Chr1:56460772-56460791 | MsG0180003094.01.T01:intron | 25.0% |
| AAAAAGAACTTACCTCATTG+AGG | + | Chr1:56460216-56460235 | None:intergenic | 30.0% | |
| AAAAGAACTTACCTCATTGA+GGG | + | Chr1:56460215-56460234 | None:intergenic | 30.0% | |
| AAAATGCTTCTTAGTGTTCT+TGG | - | Chr1:56460151-56460170 | MsG0180003094.01.T01:three_prime_UTR | 30.0% | |
| AAGCAAATGATCCAATTCAT+TGG | + | Chr1:56461738-56461757 | None:intergenic | 30.0% | |
| ATGATAAAGCATGCTATCTT+TGG | - | Chr1:56462096-56462115 | MsG0180003094.01.T01:intron | 30.0% | |
| GAAGTGAAATGCTTTATACT+TGG | - | Chr1:56461343-56461362 | MsG0180003094.01.T01:intron | 30.0% | |
| GATGTTGCATTTAATGTTCA+AGG | - | Chr1:56462366-56462385 | MsG0180003094.01.T01:intron | 30.0% | |
| GTTAATGGAACTTCAGAAAA+AGG | - | Chr1:56461092-56461111 | MsG0180003094.01.T01:intron | 30.0% | |
| TTGATAGGTTCTTCTGATAA+TGG | + | Chr1:56460013-56460032 | None:intergenic | 30.0% | |
| ! | ATGTCATTTAACTACTGCTA+TGG | - | Chr1:56461660-56461679 | MsG0180003094.01.T01:CDS | 30.0% |
| ! | CTAAGAAAGGTTTTCAGTTA+TGG | - | Chr1:56460068-56460087 | MsG0180003094.01.T01:three_prime_UTR | 30.0% |
| ! | GTTTTCAGTTATGGATGAAT+TGG | - | Chr1:56460077-56460096 | MsG0180003094.01.T01:three_prime_UTR | 30.0% |
| ! | TATGAACATATGGTGATGTT+TGG | - | Chr1:56461547-56461566 | MsG0180003094.01.T01:CDS | 30.0% |
| ! | TTTGGTGATAATCTTAAGGA+TGG | - | Chr1:56462303-56462322 | MsG0180003094.01.T01:intron | 30.0% |
| !! | AAGGTTTGGTGATAATCTTA+AGG | - | Chr1:56462299-56462318 | MsG0180003094.01.T01:intron | 30.0% |
| !! | ATTGTTGTTTCCCAATATGT+AGG | + | Chr1:56462201-56462220 | None:intergenic | 30.0% |
| !!! | GGTTATTTTAGTCAAAGAAG+TGG | - | Chr1:56462117-56462136 | MsG0180003094.01.T01:intron | 30.0% |
| !!! | TTTACTTTTGGTTTGGTTGA+AGG | + | Chr1:56460557-56460576 | None:intergenic | 30.0% |
| AAAGAACTTACCTCATTGAG+GGG | + | Chr1:56460214-56460233 | None:intergenic | 35.0% | |
| AACATGAGTTCAAATTTGGG+TGG | + | Chr1:56460528-56460547 | None:intergenic | 35.0% | |
| AATACAGCTGATACTGCTAA+AGG | + | Chr1:56461964-56461983 | None:intergenic | 35.0% | |
| ACTGTGATGATAACAAGGTT+TGG | - | Chr1:56462285-56462304 | MsG0180003094.01.T01:intron | 35.0% | |
| AGGGACAAATCCTACATATT+GGG | - | Chr1:56462188-56462207 | MsG0180003094.01.T01:intron | 35.0% | |
| AGTTATGGATGAATTGGAGT+TGG | - | Chr1:56460083-56460102 | MsG0180003094.01.T01:three_prime_UTR | 35.0% | |
| ATACAGCTGATACTGCTAAA+GGG | + | Chr1:56461963-56461982 | None:intergenic | 35.0% | |
| ATCTCTATCTGCCAATTATC+AGG | + | Chr1:56461143-56461162 | None:intergenic | 35.0% | |
| CAAATACTAGACGGTTTGAT+TGG | - | Chr1:56460661-56460680 | MsG0180003094.01.T01:CDS | 35.0% | |
| CAACAACTGTGATGATAACA+AGG | - | Chr1:56462280-56462299 | MsG0180003094.01.T01:intron | 35.0% | |
| CAATCTTTGTTAAGTTCCTG+AGG | + | Chr1:56462417-56462436 | None:intergenic | 35.0% | |
| GAAGACTATAGAGATGTTGA+TGG | - | Chr1:56462234-56462253 | MsG0180003094.01.T01:intron | 35.0% | |
| GACAAGAAAGTTTAGGAATG+TGG | + | Chr1:56461794-56461813 | None:intergenic | 35.0% | |
| GATAGCATGCTTTATCATCT+CGG | + | Chr1:56462094-56462113 | None:intergenic | 35.0% | |
| GGATGGAATCAAATACTAGA+CGG | - | Chr1:56460652-56460671 | MsG0180003094.01.T01:CDS | 35.0% | |
| TAGGGACAAATCCTACATAT+TGG | - | Chr1:56462187-56462206 | MsG0180003094.01.T01:intron | 35.0% | |
| TGAATAGGAACAGGAAAAAG+AGG | + | Chr1:56460181-56460200 | None:intergenic | 35.0% | |
| TGACAAGGATTCAAGCAATA+GGG | - | Chr1:56462169-56462188 | MsG0180003094.01.T01:intron | 35.0% | |
| TTGACAAGGATTCAAGCAAT+AGG | - | Chr1:56462168-56462187 | MsG0180003094.01.T01:intron | 35.0% | |
| ! | GATTTAGGATGAATAGGAAC+AGG | + | Chr1:56460190-56460209 | None:intergenic | 35.0% |
| ! | TAGAGGACTCTTATTTGACA+AGG | - | Chr1:56462154-56462173 | MsG0180003094.01.T01:intron | 35.0% |
| ! | TTCGATTAGGTCCTTTTGAT+CGG | + | Chr1:56462055-56462074 | None:intergenic | 35.0% |
| !!! | AAAAAGGGTGTTTTGTGATG+TGG | - | Chr1:56461108-56461127 | MsG0180003094.01.T01:intron | 35.0% |
| !!! | GAACACTAAGAAGCATTTTG+AGG | + | Chr1:56460150-56460169 | None:intergenic | 35.0% |
| AAAACTCTCAGCCGATCAAA+AGG | - | Chr1:56462041-56462060 | MsG0180003094.01.T01:intron | 40.0% | |
| AAAAGTGACAATGGTTGTCG+TGG | - | Chr1:56461040-56461059 | MsG0180003094.01.T01:intron | 40.0% | |
| AAACTTCAGCACTTCAACAC+AGG | - | Chr1:56461695-56461714 | MsG0180003094.01.T01:CDS | 40.0% | |
| AACAATTCACAGCTGCAACA+GGG | - | Chr1:56460973-56460992 | MsG0180003094.01.T01:intron | 40.0% | |
| AAGGTTCTTGCTGGTAGTAA+CGG | - | Chr1:56461179-56461198 | MsG0180003094.01.T01:intron | 40.0% | |
| ATGAACTTACCTGAAGTGCA+CGG | + | Chr1:56461274-56461293 | None:intergenic | 40.0% | |
| ATGGGGGAGAAACAAATCAA+CGG | - | Chr1:56462000-56462019 | MsG0180003094.01.T01:intron | 40.0% | |
| CTCCAATCAAGATGTTGTTG+TGG | + | Chr1:56462441-56462460 | None:intergenic | 40.0% | |
| GGCAAATGGTTCCTGATAAT+TGG | - | Chr1:56461129-56461148 | MsG0180003094.01.T01:intron | 40.0% | |
| GTCCACAACAACATCTTGAT+TGG | - | Chr1:56462436-56462455 | MsG0180003094.01.T01:intron | 40.0% | |
| GTGAAGAATGTGTTTGCAAC+CGG | - | Chr1:56461017-56461036 | MsG0180003094.01.T01:intron | 40.0% | |
| TCTGTTACAGGTTTCGTCAT+CGG | - | Chr1:56460935-56460954 | MsG0180003094.01.T01:intron | 40.0% | |
| TCTTCCAACCTAGTAATAGC+AGG | + | Chr1:56462330-56462349 | None:intergenic | 40.0% | |
| TCTTTGTTAAGTTCCTGAGG+TGG | + | Chr1:56462414-56462433 | None:intergenic | 40.0% | |
| TGGCAGATAGAGATTGTTGT+TGG | - | Chr1:56461149-56461168 | MsG0180003094.01.T01:intron | 40.0% | |
| ! | AGGGGTGATTTAGGATGAAT+AGG | + | Chr1:56460196-56460215 | None:intergenic | 40.0% |
| ! | CAGATAGAGATTGTTGTTGG+TGG | - | Chr1:56461152-56461171 | MsG0180003094.01.T01:intron | 40.0% |
| ! | GTGTTTTGTGATGTGGCAAA+TGG | - | Chr1:56461115-56461134 | MsG0180003094.01.T01:intron | 40.0% |
| ! | TACTACCAGCAAGAACCTTT+TGG | + | Chr1:56461178-56461197 | None:intergenic | 40.0% |
| ! | TGATTGTTTCTTACCACCTC+AGG | - | Chr1:56462398-56462417 | MsG0180003094.01.T01:intron | 40.0% |
| ! | TGGACTTTTAGTGCACTTAG+AGG | - | Chr1:56462137-56462156 | MsG0180003094.01.T01:intron | 40.0% |
| ! | TTACTAGGTTGGAAGAGTCA+TGG | - | Chr1:56462334-56462353 | MsG0180003094.01.T01:intron | 40.0% |
| !!! | GACAACCATTGTCACTTTTC+CGG | + | Chr1:56461039-56461058 | None:intergenic | 40.0% |
| AAGGATTAGGGTTGTGCACA+AGG | - | Chr1:56462619-56462638 | MsG0180003094.01.T01:CDS | 45.0% | |
| AATCGAACGAAGCGACAACA+CGG | - | Chr1:56462068-56462087 | MsG0180003094.01.T01:intron | 45.0% | |
| ACCTCATTGAGGGGTGATTT+AGG | + | Chr1:56460205-56460224 | None:intergenic | 45.0% | |
| AGGATGGACCTGCTATTACT+AGG | - | Chr1:56462319-56462338 | MsG0180003094.01.T01:intron | 45.0% | |
| ATCCGAAGATTTCCTCAGGA+TGG | + | Chr1:56460636-56460655 | None:intergenic | 45.0% | |
| ATCCTGAGGAAATCTTCGGA+TGG | - | Chr1:56460635-56460654 | MsG0180003094.01.T01:CDS | 45.0% | |
| CAACAATTCACAGCTGCAAC+AGG | - | Chr1:56460972-56460991 | MsG0180003094.01.T01:intron | 45.0% | |
| GTAGTAACGGCACTATTGCT+TGG | - | Chr1:56461192-56461211 | MsG0180003094.01.T01:intron | 45.0% | |
| TCCTAAATCACCCCTCAATG+AGG | - | Chr1:56460201-56460220 | MsG0180003094.01.T01:exon | 45.0% | |
| TGCAACCGGAAAAGTGACAA+TGG | - | Chr1:56461031-56461050 | MsG0180003094.01.T01:intron | 45.0% | |
| TGGACCTGCTATTACTAGGT+TGG | - | Chr1:56462323-56462342 | MsG0180003094.01.T01:intron | 45.0% | |
| TTCCATCCGAAGATTTCCTC+AGG | + | Chr1:56460640-56460659 | None:intergenic | 45.0% | |
| ! | GGTGTTATGATTGCACATGC+TGG | - | Chr1:56462255-56462274 | MsG0180003094.01.T01:intron | 45.0% |
| ! | TGTTGTCGCTTCGTTCGATT+AGG | + | Chr1:56462068-56462087 | None:intergenic | 45.0% |
| !! | GATTGTTGTTGGTGGCCAAA+AGG | - | Chr1:56461160-56461179 | MsG0180003094.01.T01:intron | 45.0% |
| !! | TATAAACATTAATATTAAAA+GGG | + | Chr1:56460847-56460866 | None:intergenic | 5.0% |
| !! | TTATAAACATTAATATTAAA+AGG | + | Chr1:56460848-56460867 | None:intergenic | 5.0% |
| !! | TTTAATATTAATGTTTATAA+TGG | - | Chr1:56460848-56460867 | MsG0180003094.01.T01:intron | 5.0% |
| AACAGGGTGTAGGAAGTTGG+AGG | - | Chr1:56460989-56461008 | MsG0180003094.01.T01:intron | 50.0% | |
| ACAGGGTGTAGGAAGTTGGA+GGG | - | Chr1:56460990-56461009 | MsG0180003094.01.T01:intron | 50.0% | |
| ATTCAGTGCAGCACAGCACA+TGG | - | Chr1:56461981-56462000 | MsG0180003094.01.T01:intron | 50.0% | |
| CTAGCTGCAGGCCAATGAAT+TGG | - | Chr1:56461724-56461743 | MsG0180003094.01.T01:CDS | 50.0% | |
| CTGCACGGCTTGAAGGATTA+GGG | - | Chr1:56462607-56462626 | MsG0180003094.01.T01:CDS | 50.0% | |
| GAAGATTTCCTCAGGATGGC+CGG | + | Chr1:56460632-56460651 | None:intergenic | 50.0% | |
| GCCTATTCTCGTGTTCTGCA+CGG | - | Chr1:56462592-56462611 | MsG0180003094.01.T01:CDS | 50.0% | |
| GGCCATCCTGAGGAAATCTT+CGG | - | Chr1:56460631-56460650 | MsG0180003094.01.T01:CDS | 50.0% | |
| TCTGCACGGCTTGAAGGATT+AGG | - | Chr1:56462606-56462625 | MsG0180003094.01.T01:CDS | 50.0% | |
| TGCAACAGGGTGTAGGAAGT+TGG | - | Chr1:56460986-56461005 | MsG0180003094.01.T01:intron | 50.0% | |
| TTCAGTGCAGCACAGCACAT+GGG | - | Chr1:56461982-56462001 | MsG0180003094.01.T01:intron | 50.0% | |
| !! | AGCCTGAGGGCGAGTTTTAT+CGG | + | Chr1:56460609-56460628 | None:intergenic | 50.0% |
| ACCCGATAAAACTCGCCCTC+AGG | - | Chr1:56460604-56460623 | MsG0180003094.01.T01:CDS | 55.0% | |
| ATGGTTGTCGTGGACGAGCT+TGG | - | Chr1:56461050-56461069 | MsG0180003094.01.T01:intron | 55.0% | |
| CACAGGCATATGCTAGCTGC+AGG | - | Chr1:56461712-56461731 | MsG0180003094.01.T01:CDS | 55.0% | |
| CAGGGTGTAGGAAGTTGGAG+GGG | - | Chr1:56460991-56461010 | MsG0180003094.01.T01:intron | 55.0% | |
| GCCGTGCAGAACACGAGAAT+AGG | + | Chr1:56462596-56462615 | None:intergenic | 55.0% | |
| GGTGGCCAAAAGGTTCTTGC+TGG | - | Chr1:56461170-56461189 | MsG0180003094.01.T01:intron | 55.0% | |
| TAAAACTCGCCCTCAGGCTC+CGG | - | Chr1:56460610-56460629 | MsG0180003094.01.T01:CDS | 55.0% | |
| TCACAGCTGCAACAGGGTGT+AGG | - | Chr1:56460979-56460998 | MsG0180003094.01.T01:intron | 55.0% | |
| TCAGTGCAGCACAGCACATG+GGG | - | Chr1:56461983-56462002 | MsG0180003094.01.T01:intron | 55.0% | |
| TCGTGTTCTGCACGGCTTGA+AGG | - | Chr1:56462600-56462619 | MsG0180003094.01.T01:CDS | 55.0% | |
| TGTCGTGGACGAGCTTGGAT+CGG | - | Chr1:56461055-56461074 | MsG0180003094.01.T01:intron | 55.0% | |
| TTGCTTGGCGTCACACACCT+TGG | - | Chr1:56461207-56461226 | MsG0180003094.01.T01:intron | 55.0% | |
| !! | GCCTGAGGGCGAGTTTTATC+GGG | + | Chr1:56460608-56460627 | None:intergenic | 55.0% |
| !! | GTCGGTGGTGGTGGTGTTAA+TGG | - | Chr1:56461077-56461096 | MsG0180003094.01.T01:intron | 55.0% |
| ACCTGAAGTGCACGGCGAAG+AGG | + | Chr1:56461266-56461285 | None:intergenic | 60.0% | |
| CAGTGCAGCACAGCACATGG+GGG | - | Chr1:56461984-56462003 | MsG0180003094.01.T01:intron | 60.0% | |
| GGTGTGCACGCTGCTAAAGG+CGG | - | Chr1:56461233-56461252 | MsG0180003094.01.T01:intron | 60.0% | |
| GTGGACGAGCTTGGATCGGT+CGG | - | Chr1:56461059-56461078 | MsG0180003094.01.T01:intron | 60.0% | |
| TCCTCTTCGCCGTGCACTTC+AGG | - | Chr1:56461262-56461281 | MsG0180003094.01.T01:intron | 60.0% | |
| TGGCGTCACACACCTTGGCT+CGG | - | Chr1:56461212-56461231 | MsG0180003094.01.T01:intron | 60.0% | |
| ! | CTCGGTGTGCACGCTGCTAA+AGG | - | Chr1:56461230-56461249 | MsG0180003094.01.T01:intron | 60.0% |
| GACGAGCTTGGATCGGTCGG+TGG | - | Chr1:56461062-56461081 | MsG0180003094.01.T01:intron | 65.0% | |
| GAGCTTGGATCGGTCGGTGG+TGG | - | Chr1:56461065-56461084 | MsG0180003094.01.T01:intron | 65.0% | |
| TCAGGATGGCCGGAGCCTGA+GGG | + | Chr1:56460622-56460641 | None:intergenic | 65.0% | |
| ! | CTTGGATCGGTCGGTGGTGG+TGG | - | Chr1:56461068-56461087 | MsG0180003094.01.T01:intron | 65.0% |
| CTCAGGATGGCCGGAGCCTG+AGG | + | Chr1:56460623-56460642 | None:intergenic | 70.0% | |
| CTCAGGCTCCGGCCATCCTG+AGG | - | Chr1:56460621-56460640 | MsG0180003094.01.T01:CDS | 70.0% | |
| GCAGCGTGCACACCGAGCCA+AGG | + | Chr1:56461227-56461246 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 56459995 | 56462700 | 56459995 | ID=MsG0180003094.01;Name=MsG0180003094.01 |
| Chr1 | mRNA | 56459995 | 56462700 | 56459995 | ID=MsG0180003094.01.T01;Parent=MsG0180003094.01;Name=MsG0180003094.01.T01;_AED=0.42;_eAED=0.42;_QI=0|1|0.66|1|1|1|3|221|364 |
| Chr1 | exon | 56459995 | 56460743 | 56459995 | ID=MsG0180003094.01.T01:exon:39445;Parent=MsG0180003094.01.T01 |
| Chr1 | exon | 56461412 | 56461750 | 56461412 | ID=MsG0180003094.01.T01:exon:39444;Parent=MsG0180003094.01.T01 |
| Chr1 | exon | 56462473 | 56462700 | 56462473 | ID=MsG0180003094.01.T01:exon:39443;Parent=MsG0180003094.01.T01 |
| Chr1 | CDS | 56462473 | 56462700 | 56462473 | ID=MsG0180003094.01.T01:cds;Parent=MsG0180003094.01.T01 |
| Chr1 | CDS | 56461412 | 56461750 | 56461412 | ID=MsG0180003094.01.T01:cds;Parent=MsG0180003094.01.T01 |
| Chr1 | CDS | 56460216 | 56460743 | 56460216 | ID=MsG0180003094.01.T01:cds;Parent=MsG0180003094.01.T01 |
| Chr1 | three_prime_UTR | 56459995 | 56460215 | 56459995 | ID=MsG0180003094.01.T01:three_prime_utr;Parent=MsG0180003094.01.T01 |
| Gene Sequence |
| Protein sequence |
