AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009920.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009920.01.T01 MTR_2g072980 83.969 131 21 0 1 131 62 192 1.40e-73 221
MsG0280009920.01.T01 MTR_2g073010 71.212 132 28 3 1 127 62 188 8.01e-59 183
MsG0280009920.01.T01 MTR_8g059790 53.191 141 47 4 1 127 59 194 4.64e-41 138
MsG0280009920.01.T01 MTR_0100s0150 50.000 140 52 4 4 130 60 194 7.82e-38 130
MsG0280009920.01.T01 MTR_0211s0080 52.239 134 49 4 4 127 60 188 1.24e-37 129
MsG0280009920.01.T01 MTR_0302s0030 49.275 138 51 4 4 127 60 192 1.78e-36 126
MsG0280009920.01.T01 MTR_3g014820 47.887 142 54 4 1 127 57 193 2.91e-36 125
MsG0280009920.01.T01 MTR_8g461050 48.551 138 52 4 4 127 60 192 5.97e-36 125
MsG0280009920.01.T01 MTR_3g014870 47.183 142 55 4 1 127 57 193 2.41e-35 123
MsG0280009920.01.T01 MTR_0084s0030 46.809 141 56 4 4 130 60 195 1.09e-32 116
MsG0280009920.01.T01 MTR_7g108815 47.518 141 54 5 1 127 56 190 2.48e-32 115
MsG0280009920.01.T01 MTR_8g060550 45.833 144 57 6 1 130 57 193 3.87e-32 115
MsG0280009920.01.T01 MTR_8g461690 45.833 144 57 6 1 130 57 193 3.87e-32 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 49 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATCTACAGAATGGAAAT+TGG 0.284846 2:-60772349 MsG0280009920.01.T01:CDS
CCAATTGTCAACAACCTTCA+TGG 0.286438 2:+60768760 None:intergenic
CAAGACTGCCCATTGATTCT+AGG 0.290283 2:-60768905 MsG0280009920.01.T01:CDS
GTTTCTTGACCCACATATAA+AGG 0.297981 2:+60772486 None:intergenic
CCATGAAGGTTGTTGACAAT+TGG 0.325633 2:-60768760 MsG0280009920.01.T01:CDS
ATACAGTTGTTAAGGTGAAT+AGG 0.332362 2:-60772410 MsG0280009920.01.T01:CDS
CAGAATGGAAATTGGGTGAT+AGG 0.341031 2:-60772341 MsG0280009920.01.T01:CDS
GATTCTAGGAAGGTCATTCT+TGG 0.345464 2:-60768891 MsG0280009920.01.T01:CDS
GGTCAAGAAACTACAGATAT+TGG 0.348677 2:-60772474 MsG0280009920.01.T01:CDS
TACAGTTGTTAAGGTGAATA+GGG 0.357658 2:-60772409 MsG0280009920.01.T01:CDS
TTTGATTGACTTGGAGCATA+AGG 0.394493 2:-60768855 MsG0280009920.01.T01:CDS
AAGACTCCACTTGGAATTGA+AGG 0.410273 2:-60772255 MsG0280009920.01.T01:CDS
TTTGGATGGTGAGAAATTCT+TGG 0.411795 2:-60772136 MsG0280009920.01.T01:CDS
AACAGAAGATACAGTTGTTA+AGG 0.418077 2:-60772418 MsG0280009920.01.T01:CDS
GCTTCATTGTAAGCATTTGA+TGG 0.428824 2:+60768782 None:intergenic
CAATCTACAGAATGGAAATT+GGG 0.431621 2:-60772348 MsG0280009920.01.T01:CDS
GGAAGGAGGCTTATTATAGC+TGG 0.434846 2:-60772306 MsG0280009920.01.T01:CDS
GTCACTTTGATGAATAGAAA+TGG 0.435857 2:-60772516 None:intergenic
TTTCTTGACCCACATATAAA+GGG 0.438692 2:+60772487 None:intergenic
CATGAAGGTTGTTGACAATT+GGG 0.438820 2:-60768759 MsG0280009920.01.T01:CDS
AATGACCTTCCTAGAATCAA+TGG 0.446385 2:+60768896 None:intergenic
TGGTTCATGCCCTTTATATG+TGG 0.455481 2:-60772496 MsG0280009920.01.T01:CDS
AATTGGGTGATAGGGACAAT+AGG 0.464287 2:-60772332 MsG0280009920.01.T01:CDS
TGTTAAAGCTTTGATTGACT+TGG 0.491077 2:-60768864 MsG0280009920.01.T01:CDS
AGCATAAGGAGGTGTTCATA+AGG 0.512698 2:-60768841 MsG0280009920.01.T01:CDS
AGAATGGAAATTGGGTGATA+GGG 0.514805 2:-60772340 MsG0280009920.01.T01:CDS
ATAGGGACAATAGGAGTGGA+AGG 0.516567 2:-60772323 MsG0280009920.01.T01:CDS
CTTATTATAGCTGGGAGTGA+TGG 0.528514 2:-60772297 MsG0280009920.01.T01:CDS
ATGACCTTCCTAGAATCAAT+GGG 0.536597 2:+60768897 None:intergenic
TGCTTACAATGAAGCCATGA+AGG 0.542561 2:-60768774 MsG0280009920.01.T01:CDS
CGAGTACTATTTATGCTACA+AGG 0.553538 2:-60768813 MsG0280009920.01.T01:CDS
GTTGTGGACAATCTACAGAA+TGG 0.556391 2:-60772356 MsG0280009920.01.T01:CDS
ACGGTTAATTGCGGTACTGT+TGG 0.557530 2:-60772192 MsG0280009920.01.T01:CDS
GGTTCATGCCCTTTATATGT+GGG 0.568912 2:-60772495 MsG0280009920.01.T01:CDS
ACTGTATCTTCTGTTGCCAT+AGG 0.571927 2:+60772426 None:intergenic
GAAGGAGGCTTATTATAGCT+GGG 0.576950 2:-60772305 MsG0280009920.01.T01:CDS
ACCGCAATTAACCGTTTCCG+AGG 0.585521 2:+60772200 None:intergenic
GATGGTGAGAAATTCTTGGA+TGG 0.585800 2:-60772132 MsG0280009920.01.T01:intron
GTAGCATAAATAGTACTCGT+TGG 0.595042 2:+60768817 None:intergenic
GATTGACTTGGAGCATAAGG+AGG 0.605732 2:-60768852 MsG0280009920.01.T01:CDS
TCATTGTAAGCATTTGATGG+TGG 0.608467 2:+60768785 None:intergenic
GGTGATAGGGACAATAGGAG+TGG 0.613024 2:-60772327 MsG0280009920.01.T01:CDS
AAAACACCTTCAATTCCAAG+TGG 0.642111 2:+60772249 None:intergenic
ACTGCCCATTGATTCTAGGA+AGG 0.645352 2:-60768901 MsG0280009920.01.T01:CDS
CCGCAATTAACCGTTTCCGA+GGG 0.650030 2:+60772201 None:intergenic
CCCTCGGAAACGGTTAATTG+CGG 0.663767 2:-60772201 MsG0280009920.01.T01:CDS
GAAACTACAGATATTGGACA+AGG 0.666365 2:-60772468 MsG0280009920.01.T01:CDS
GGGACAATAGGAGTGGAAGG+AGG 0.693684 2:-60772320 MsG0280009920.01.T01:CDS
AAACTACAGATATTGGACAA+GGG 0.717751 2:-60772467 MsG0280009920.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - Chr2:60770596-60770615 MsG0280009920.01.T01:intron 0.0%
!! ATATATATATATATATATAT+AGG + Chr2:60770615-60770596 None:intergenic 0.0%
!! TATATATATATATATATATA+GGG + Chr2:60770616-60770597 None:intergenic 0.0%
!! ATAATAATAATAATTCATAG+AGG + Chr2:60771008-60771027 None:intergenic 10.0%
!! TCAATAAAAAATTTATCATA+CGG + Chr2:60771591-60771610 None:intergenic 10.0%
!! TTATAATATTGATCTATATT+AGG - Chr2:60769272-60769291 MsG0280009920.01.T01:intron 10.0%
!!! AGTATTTTTTTACTTTTTAT+TGG - Chr2:60769589-60769608 MsG0280009920.01.T01:intron 10.0%
!!! CATTTTTATAAGTATTATTA+AGG - Chr2:60770745-60770764 MsG0280009920.01.T01:intron 10.0%
!!! TTTATTTATTCATAACATTT+TGG + Chr2:60769468-60769487 None:intergenic 10.0%
!!! TTTTAGGTAATTATAATATT+AGG - Chr2:60769019-60769038 MsG0280009920.01.T01:intron 10.0%
!!! TTTTTTTTTTTTATTGAAGA+GGG - Chr2:60769913-60769932 MsG0280009920.01.T01:intron 10.0%
!!! TTTTTTTTTTTTTATTGAAG+AGG - Chr2:60769912-60769931 MsG0280009920.01.T01:intron 10.0%
!! TTAACATATAAAATGAATAG+AGG - Chr2:60769688-60769707 MsG0280009920.01.T01:intron 15.0%
!! TTAGATATTTAAAAATAGCA+TGG - Chr2:60770285-60770304 MsG0280009920.01.T01:intron 15.0%
!!! AATAAATCCATTTTTATGAA+TGG + Chr2:60770509-60770528 None:intergenic 15.0%
!!! AATATTTGAAATGATAAAAG+TGG + Chr2:60770801-60770820 None:intergenic 15.0%
!!! AATTTTTAAATATTGATCGA+TGG + Chr2:60769188-60769207 None:intergenic 15.0%
!!! ATAAATCCATTTTTATGAAT+GGG + Chr2:60770508-60770527 None:intergenic 15.0%
!!! ATATTTGAAATGATAAAAGT+GGG + Chr2:60770800-60770819 None:intergenic 15.0%
!!! CATAAAAATGGATTTATTAT+TGG - Chr2:60770511-60770530 MsG0280009920.01.T01:intron 15.0%
!!! TGAAAATGATAAGATTTTAT+TGG - Chr2:60769089-60769108 MsG0280009920.01.T01:intron 15.0%
!!! TTAAAGTCATTTGAAATTAA+AGG + Chr2:60771213-60771232 None:intergenic 15.0%
!!! TTATTTTTATTAAACTATCC+AGG + Chr2:60770220-60770239 None:intergenic 15.0%
!!! TTTTTGGTAAAAAAACAAAT+GGG - Chr2:60771248-60771267 MsG0280009920.01.T01:intron 15.0%
!!! TTTTTTGGTAAAAAAACAAA+TGG - Chr2:60771247-60771266 MsG0280009920.01.T01:intron 15.0%
!! AAAAAACTTAACTACTATAC+AGG - Chr2:60770088-60770107 MsG0280009920.01.T01:intron 20.0%
!! AAAATGATGATTAACATTGA+TGG - Chr2:60772273-60772292 MsG0280009920.01.T01:CDS 20.0%
!! AGAAAAATAATATAGACGAA+TGG - Chr2:60771487-60771506 MsG0280009920.01.T01:intron 20.0%
!! TAATATGCCCATAAAATAAA+TGG - Chr2:60771949-60771968 MsG0280009920.01.T01:intron 20.0%
!!! ACTTACACCTTAATAATTTT+AGG + Chr2:60770697-60770716 None:intergenic 20.0%
!!! TTTCTTCTAGTTTTCTTAAT+AGG + Chr2:60771763-60771782 None:intergenic 20.0%
!!! TTTTCGACCATTTATTTTAT+GGG + Chr2:60771959-60771978 None:intergenic 20.0%
!!! TTTTTCGACCATTTATTTTA+TGG + Chr2:60771960-60771979 None:intergenic 20.0%
! AATGAAGATTGATGTTATGA+AGG + Chr2:60769236-60769255 None:intergenic 25.0%
! ATAGAAATTATTAAACCACG+AGG + Chr2:60769805-60769824 None:intergenic 25.0%
! ATCCTCCAACTAATTATTAT+GGG + Chr2:60769397-60769416 None:intergenic 25.0%
! CAAAAACCCATTCATAAAAA+TGG - Chr2:60770499-60770518 MsG0280009920.01.T01:intron 25.0%
! TATCCTCCAACTAATTATTA+TGG + Chr2:60769398-60769417 None:intergenic 25.0%
! TTCATAACATCAATCTTCAT+TGG - Chr2:60769235-60769254 MsG0280009920.01.T01:intron 25.0%
! TTTATTGGAAATGTTGTTGT+AGG - Chr2:60772121-60772140 MsG0280009920.01.T01:intron 25.0%
! TTTCTACTTAATACATGCAA+AGG + Chr2:60770404-60770423 None:intergenic 25.0%
!! CTTGAAAATTTTCCATTTTC+TGG + Chr2:60771898-60771917 None:intergenic 25.0%
!! GTAGTGAAATTTTTATAGCA+GGG - Chr2:60769760-60769779 MsG0280009920.01.T01:intron 25.0%
!! TACACCTTAATAATTTTAGG+TGG + Chr2:60770694-60770713 None:intergenic 25.0%
!! TAGTGAAATTTTTATAGCAG+GGG - Chr2:60769761-60769780 MsG0280009920.01.T01:intron 25.0%
!! TGTAGTGAAATTTTTATAGC+AGG - Chr2:60769759-60769778 MsG0280009920.01.T01:intron 25.0%
!! TTATAAGAAAAGTTTTCACC+TGG - Chr2:60770438-60770457 MsG0280009920.01.T01:intron 25.0%
!! TTTCAAATGACTTTAAAGAG+TGG - Chr2:60771217-60771236 MsG0280009920.01.T01:intron 25.0%
!!! ACACCTTAATAATTTTAGGT+GGG + Chr2:60770693-60770712 None:intergenic 25.0%
!!! ATCTGTTATTTTTACTCCTA+TGG - Chr2:60768807-60768826 MsG0280009920.01.T01:CDS 25.0%
!!! TGAAACAGCTTGTTAATAAT+TGG - Chr2:60769366-60769385 MsG0280009920.01.T01:intron 25.0%
!!! TGATAAGATTTTATTGGCTT+TGG - Chr2:60769095-60769114 MsG0280009920.01.T01:intron 25.0%
AAAACACTAATGTGCAAGTT+AGG + Chr2:60771282-60771301 None:intergenic 30.0%
AAAAGTTTGTCTCATGTGAA+GGG - Chr2:60770829-60770848 MsG0280009920.01.T01:intron 30.0%
AAACTACAGATATTGGACAA+GGG - Chr2:60768782-60768801 MsG0280009920.01.T01:CDS 30.0%
AACAGAAGATACAGTTGTTA+AGG - Chr2:60768831-60768850 MsG0280009920.01.T01:CDS 30.0%
AAGAAAACTAGAAGAAACGT+AGG - Chr2:60771766-60771785 MsG0280009920.01.T01:intron 30.0%
AAGTGGGTGTAAATTATTGA+AGG + Chr2:60770784-60770803 None:intergenic 30.0%
ACAATCTACAGAATGGAAAT+TGG - Chr2:60768900-60768919 MsG0280009920.01.T01:CDS 30.0%
ACACCCACCTAAAATTATTA+AGG - Chr2:60770687-60770706 MsG0280009920.01.T01:intron 30.0%
AGCTACCCATAATAATTAGT+TGG - Chr2:60769389-60769408 MsG0280009920.01.T01:intron 30.0%
AGGAGAAACTTTATGTGATT+TGG - Chr2:60772141-60772160 MsG0280009920.01.T01:CDS 30.0%
ATACAGTTGTTAAGGTGAAT+AGG - Chr2:60768839-60768858 MsG0280009920.01.T01:CDS 30.0%
CAATCTACAGAATGGAAATT+GGG - Chr2:60768901-60768920 MsG0280009920.01.T01:CDS 30.0%
GAAATAAATCCATCCTTAGA+AGG + Chr2:60772034-60772053 None:intergenic 30.0%
GAGAAACTTTATGTGATTTG+GGG - Chr2:60772143-60772162 MsG0280009920.01.T01:CDS 30.0%
GGAGAAACTTTATGTGATTT+GGG - Chr2:60772142-60772161 MsG0280009920.01.T01:CDS 30.0%
TAAAAGTTTGTCTCATGTGA+AGG - Chr2:60770828-60770847 MsG0280009920.01.T01:intron 30.0%
TAAGAAATAATGCAACGATG+AGG - Chr2:60771530-60771549 MsG0280009920.01.T01:intron 30.0%
TACAGTTGTTAAGGTGAATA+GGG - Chr2:60768840-60768859 MsG0280009920.01.T01:CDS 30.0%
TACCCATAATAATTAGTTGG+AGG - Chr2:60769392-60769411 MsG0280009920.01.T01:intron 30.0%
TGCAAGAATTTCATACAAGA+GGG + Chr2:60771986-60772005 None:intergenic 30.0%
TGTAATGTATACTTGTATCC+TGG - Chr2:60769339-60769358 MsG0280009920.01.T01:intron 30.0%
TTGCAAGAATTTCATACAAG+AGG + Chr2:60771987-60772006 None:intergenic 30.0%
TTTATTATTGGATGCCTCTA+AGG - Chr2:60770523-60770542 MsG0280009920.01.T01:intron 30.0%
TTTCTTGACCCACATATAAA+GGG + Chr2:60768765-60768784 None:intergenic 30.0%
! ACATTTCCAATAAAGCATCA+AGG + Chr2:60772115-60772134 None:intergenic 30.0%
! AGAAACTTTATGTGATTTGG+GGG - Chr2:60772144-60772163 MsG0280009920.01.T01:CDS 30.0%
! ATTTTCTTGAACAAATGTCC+AGG - Chr2:60771091-60771110 MsG0280009920.01.T01:intron 30.0%
! GATGTCTTCATTGGTATTTT+AGG + Chr2:60769212-60769231 None:intergenic 30.0%
! TAAGGTGAATAGGGATTTTA+AGG - Chr2:60768849-60768868 MsG0280009920.01.T01:CDS 30.0%
! TCACATGAGACAAACTTTTA+AGG + Chr2:60770828-60770847 None:intergenic 30.0%
! TGTTAAAGCTTTGATTGACT+TGG - Chr2:60772385-60772404 MsG0280009920.01.T01:CDS 30.0%
!! TAATATTAGGTTTTGTCCCT+CGG - Chr2:60769032-60769051 MsG0280009920.01.T01:intron 30.0%
!! TCTAACAAAAACTTGTTGTG+TGG - Chr2:60772054-60772073 MsG0280009920.01.T01:intron 30.0%
!! TGTTCTTGTTGATTCAAACA+CGG + Chr2:60769994-60770013 None:intergenic 30.0%
!! TTGCACTTAGTGTTTTTAAG+TGG + Chr2:60770656-60770675 None:intergenic 30.0%
!! TTTATTGAAGAGGGTGTTAT+TGG - Chr2:60769922-60769941 MsG0280009920.01.T01:intron 30.0%
!!! AAGATTTTATTGGCTTTGGA+TGG - Chr2:60769099-60769118 MsG0280009920.01.T01:intron 30.0%
!!! CATCCTTGTTTTATGAATGT+CGG - Chr2:60772223-60772242 MsG0280009920.01.T01:CDS 30.0%
!!! CTTTGAGAGTGAAGTTTTTT+TGG - Chr2:60769727-60769746 MsG0280009920.01.T01:intron 30.0%
!!! TGCACTTAGTGTTTTTAAGT+GGG + Chr2:60770655-60770674 None:intergenic 30.0%
!!! TGTTTTCTTTTTCAACAACC+TGG + Chr2:60771112-60771131 None:intergenic 30.0%
AAAACACCTTCAATTCCAAG+TGG + Chr2:60769003-60769022 None:intergenic 35.0%
AACACATTGATGTACCTTAG+AGG + Chr2:60770540-60770559 None:intergenic 35.0%
AACCGTCTTAGTTACAATCA+AGG + Chr2:60769894-60769913 None:intergenic 35.0%
AATGACCTTCCTAGAATCAA+TGG + Chr2:60772356-60772375 None:intergenic 35.0%
ACCGTCTTAGTTACAATCAA+GGG + Chr2:60769893-60769912 None:intergenic 35.0%
AGAATGGAAATTGGGTGATA+GGG - Chr2:60768909-60768928 MsG0280009920.01.T01:CDS 35.0%
AGATAACACCACAAACGTTT+AGG - Chr2:60770142-60770161 MsG0280009920.01.T01:intron 35.0%
AGTCCGACATTCATAAAACA+AGG + Chr2:60772229-60772248 None:intergenic 35.0%
ATGACCTTCCTAGAATCAAT+GGG + Chr2:60772355-60772374 None:intergenic 35.0%
CATGAAGGTTGTTGACAATT+GGG - Chr2:60772490-60772509 MsG0280009920.01.T01:CDS 35.0%
CATGCAAAGGAGAAAAAACA+TGG + Chr2:60770391-60770410 None:intergenic 35.0%
CGAGTACTATTTATGCTACA+AGG - Chr2:60772436-60772455 MsG0280009920.01.T01:CDS 35.0%
GAAACTACAGATATTGGACA+AGG - Chr2:60768781-60768800 MsG0280009920.01.T01:CDS 35.0%
GCATGAGATTTACTTGAAGA+AGG - Chr2:60769947-60769966 MsG0280009920.01.T01:intron 35.0%
GCTTCATTGTAAGCATTTGA+TGG + Chr2:60772470-60772489 None:intergenic 35.0%
GGTCAAGAAACTACAGATAT+TGG - Chr2:60768775-60768794 MsG0280009920.01.T01:CDS 35.0%
GTAGCATAAATAGTACTCGT+TGG + Chr2:60772435-60772454 None:intergenic 35.0%
GTTATTGTTGCACGAGATAA+AGG - Chr2:60772317-60772336 MsG0280009920.01.T01:CDS 35.0%
GTTTCTTGACCCACATATAA+AGG + Chr2:60768766-60768785 None:intergenic 35.0%
TCATTGTAAGCATTTGATGG+TGG + Chr2:60772467-60772486 None:intergenic 35.0%
TCCCTTGATTGTAACTAAGA+CGG - Chr2:60769889-60769908 MsG0280009920.01.T01:intron 35.0%
TGGAAAATGACTTACCACTT+CGG - Chr2:60770305-60770324 MsG0280009920.01.T01:intron 35.0%
TTAGAAGAAGGCAAGACATT+AGG - Chr2:60771847-60771866 MsG0280009920.01.T01:intron 35.0%
TTTGGATGGTGAGAAATTCT+TGG - Chr2:60769113-60769132 MsG0280009920.01.T01:intron 35.0%
! AATTTTTGTTCCAACCGAAG+TGG + Chr2:60770322-60770341 None:intergenic 35.0%
! TGACTTTAAAGAGTGGAGAT+TGG - Chr2:60771224-60771243 MsG0280009920.01.T01:intron 35.0%
! TGCACATTAGTGTTTTCAGA+TGG - Chr2:60771286-60771305 MsG0280009920.01.T01:intron 35.0%
! TTGTGTGGTTCAAGATTTTC+AGG - Chr2:60772069-60772088 MsG0280009920.01.T01:intron 35.0%
! TTTCAGGTACCAAAAGAAGA+AGG - Chr2:60772085-60772104 MsG0280009920.01.T01:intron 35.0%
!! AGAATTTTGAAGACTCCACT+TGG - Chr2:60768985-60769004 MsG0280009920.01.T01:intron 35.0%
!! GTTCTTGTTGATTCAAACAC+GGG + Chr2:60769993-60770012 None:intergenic 35.0%
!! TTTGATTGACTTGGAGCATA+AGG - Chr2:60772394-60772413 MsG0280009920.01.T01:CDS 35.0%
!!! AAGAGTGGAGATTGGTTTTT+TGG - Chr2:60771232-60771251 MsG0280009920.01.T01:intron 35.0%
!!! CTTGGAATTGAAGGTGTTTT+AGG - Chr2:60769003-60769022 MsG0280009920.01.T01:intron 35.0%
!!! TTTTCAGCTTCTTCAAGTTG+TGG - Chr2:60768877-60768896 MsG0280009920.01.T01:CDS 35.0%
AAATGACTTACCACTTCGGT+TGG - Chr2:60770309-60770328 MsG0280009920.01.T01:intron 40.0%
AAGAAGGCAAGACATTAGGT+GGG - Chr2:60771851-60771870 MsG0280009920.01.T01:intron 40.0%
AAGACTCCACTTGGAATTGA+AGG - Chr2:60768994-60769013 MsG0280009920.01.T01:intron 40.0%
AATTGGGTGATAGGGACAAT+AGG - Chr2:60768917-60768936 MsG0280009920.01.T01:intron 40.0%
ACACCACATGTCTTAGAAGA+AGG - Chr2:60771835-60771854 MsG0280009920.01.T01:intron 40.0%
ACTGTATCTTCTGTTGCCAT+AGG + Chr2:60768826-60768845 None:intergenic 40.0%
AGAAGAAACGTAGGCAACAA+AGG - Chr2:60771775-60771794 MsG0280009920.01.T01:intron 40.0%
ATAGATGAGCGTCCAGAAAA+TGG - Chr2:60771883-60771902 MsG0280009920.01.T01:intron 40.0%
ATCCGGTTAAAAGTGGATAG+CGG + Chr2:60772187-60772206 None:intergenic 40.0%
CAGAATGGAAATTGGGTGAT+AGG - Chr2:60768908-60768927 MsG0280009920.01.T01:CDS 40.0%
CCAATTGTCAACAACCTTCA+TGG + Chr2:60772492-60772511 None:intergenic 40.0%
CCATGAAGGTTGTTGACAAT+TGG - Chr2:60772489-60772508 MsG0280009920.01.T01:CDS 40.0%
CTATTTAGCTGAAGTTGACC+AGG + Chr2:60770459-60770478 None:intergenic 40.0%
CTTATTATAGCTGGGAGTGA+TGG - Chr2:60768952-60768971 MsG0280009920.01.T01:intron 40.0%
GAAGGAGGCTTATTATAGCT+GGG - Chr2:60768944-60768963 MsG0280009920.01.T01:intron 40.0%
GAAGTTCACACATATCTTCC+GGG - Chr2:60770164-60770183 MsG0280009920.01.T01:intron 40.0%
GAGTGTAATCAAGTGACTGT+AGG + Chr2:60770726-60770745 None:intergenic 40.0%
GATGGTGAGAAATTCTTGGA+TGG - Chr2:60769117-60769136 MsG0280009920.01.T01:intron 40.0%
GGAAGTTCACACATATCTTC+CGG - Chr2:60770163-60770182 MsG0280009920.01.T01:intron 40.0%
GGAGATCCTTGATGCTTTAT+TGG - Chr2:60772106-60772125 MsG0280009920.01.T01:intron 40.0%
GGTTCATGCCCTTTATATGT+GGG - Chr2:60768754-60768773 MsG0280009920.01.T01:CDS 40.0%
GTGAACTTCCTAAACGTTTG+TGG + Chr2:60770153-60770172 None:intergenic 40.0%
GTTGTGGACAATCTACAGAA+TGG - Chr2:60768893-60768912 MsG0280009920.01.T01:CDS 40.0%
TATGAAGGCGATGTCTTCAT+TGG + Chr2:60769221-60769240 None:intergenic 40.0%
TCTACGCATGGAATATAACC+TGG - Chr2:60770199-60770218 MsG0280009920.01.T01:intron 40.0%
TGCTTACAATGAAGCCATGA+AGG - Chr2:60772475-60772494 MsG0280009920.01.T01:CDS 40.0%
TGGTTCATGCCCTTTATATG+TGG - Chr2:60768753-60768772 MsG0280009920.01.T01:CDS 40.0%
! AACAAGCTGTTTCAAGAACC+AGG + Chr2:60769360-60769379 None:intergenic 40.0%
! CAAGGATCTCCTTCTTCTTT+TGG + Chr2:60772097-60772116 None:intergenic 40.0%
! GATTCTAGGAAGGTCATTCT+TGG - Chr2:60772358-60772377 MsG0280009920.01.T01:CDS 40.0%
! TTATGTGATTTGGGGGCAAA+TGG - Chr2:60772151-60772170 MsG0280009920.01.T01:CDS 40.0%
!! AGCATAAGGAGGTGTTCATA+AGG - Chr2:60772408-60772427 MsG0280009920.01.T01:CDS 40.0%
!! CTATCCACTTTTAACCGGAT+CGG - Chr2:60772187-60772206 MsG0280009920.01.T01:CDS 40.0%
!! TATCCACTTTTAACCGGATC+GGG - Chr2:60772188-60772207 MsG0280009920.01.T01:CDS 40.0%
!! TTGCCTTCTTCTAAGACATG+TGG + Chr2:60771841-60771860 None:intergenic 40.0%
AAACCACGAGGCACATAGAA+TGG + Chr2:60769793-60769812 None:intergenic 45.0%
AAGACATTAGGTGGGGAGAT+AGG - Chr2:60771859-60771878 MsG0280009920.01.T01:intron 45.0%
ACGGTTAATTGCGGTACTGT+TGG - Chr2:60769057-60769076 MsG0280009920.01.T01:intron 45.0%
AGAAGGCAAGACATTAGGTG+GGG - Chr2:60771852-60771871 MsG0280009920.01.T01:intron 45.0%
AGGCAACAAAGGAAGTGACA+GGG - Chr2:60771786-60771805 MsG0280009920.01.T01:intron 45.0%
ATAGGGACAATAGGAGTGGA+AGG - Chr2:60768926-60768945 MsG0280009920.01.T01:intron 45.0%
ATGAATGTCGGACTTGCAGA+TGG - Chr2:60772235-60772254 MsG0280009920.01.T01:CDS 45.0%
ATGTCTTCTGTGCTTCCTCT+CGG + Chr2:60771149-60771168 None:intergenic 45.0%
GAAGAAGGCAAGACATTAGG+TGG - Chr2:60771850-60771869 MsG0280009920.01.T01:intron 45.0%
GGAAGGAGGCTTATTATAGC+TGG - Chr2:60768943-60768962 MsG0280009920.01.T01:intron 45.0%
GGTGTCAGAGATGAAAGTTG+AGG - Chr2:60771807-60771826 MsG0280009920.01.T01:intron 45.0%
TAGGCAACAAAGGAAGTGAC+AGG - Chr2:60771785-60771804 MsG0280009920.01.T01:intron 45.0%
TTACCATTCTATGTGCCTCG+TGG - Chr2:60769787-60769806 MsG0280009920.01.T01:intron 45.0%
! ATGGTAATGCTCTCAGCGTT+GGG - Chr2:60769136-60769155 MsG0280009920.01.T01:intron 45.0%
! GAGAATGAGCCTTCTAAGGA+TGG - Chr2:60772022-60772041 MsG0280009920.01.T01:intron 45.0%
!! ACTGCCCATTGATTCTAGGA+AGG - Chr2:60772348-60772367 MsG0280009920.01.T01:CDS 45.0%
!! ATCCACTTTTAACCGGATCG+GGG - Chr2:60772189-60772208 MsG0280009920.01.T01:CDS 45.0%
!! CAAGACTGCCCATTGATTCT+AGG - Chr2:60772344-60772363 MsG0280009920.01.T01:CDS 45.0%
!! GATTGACTTGGAGCATAAGG+AGG - Chr2:60772397-60772416 MsG0280009920.01.T01:CDS 45.0%
!! TAGGTTTTGTCCCTCGGAAA+CGG - Chr2:60769038-60769057 MsG0280009920.01.T01:intron 45.0%
!! TGCCGCTATCCACTTTTAAC+CGG - Chr2:60772182-60772201 MsG0280009920.01.T01:CDS 45.0%
!!! TTTCTATTTATTTATTTTTT+TGG - Chr2:60769818-60769837 MsG0280009920.01.T01:intron 5.0%
AAGGCTCATTCTCCAGCTTC+AGG + Chr2:60772015-60772034 None:intergenic 50.0%
ACCGCAATTAACCGTTTCCG+AGG + Chr2:60769052-60769071 None:intergenic 50.0%
ACGAGATGAACATCACCGAG+AGG - Chr2:60771131-60771150 MsG0280009920.01.T01:intron 50.0%
CAATCAAGGGACACATCGAG+TGG + Chr2:60769880-60769899 None:intergenic 50.0%
CCCTCGGAAACGGTTAATTG+CGG - Chr2:60769048-60769067 MsG0280009920.01.T01:intron 50.0%
CCGCAATTAACCGTTTCCGA+GGG + Chr2:60769051-60769070 None:intergenic 50.0%
CTTGCAAGAGATCCTGAAGC+TGG - Chr2:60772000-60772019 MsG0280009920.01.T01:intron 50.0%
GACTTGCAGATGGCAGGAAA+TGG - Chr2:60772245-60772264 MsG0280009920.01.T01:CDS 50.0%
GCTGGAGAATGAGCCTTCTA+AGG - Chr2:60772018-60772037 MsG0280009920.01.T01:intron 50.0%
GGTGATAGGGACAATAGGAG+TGG - Chr2:60768922-60768941 MsG0280009920.01.T01:intron 50.0%
GTAATGTTAGACCCCCGATC+CGG + Chr2:60772204-60772223 None:intergenic 50.0%
TATCTTCCGGGCAATCATCG+CGG - Chr2:60770176-60770195 MsG0280009920.01.T01:intron 50.0%
! GATGGTAATGCTCTCAGCGT+TGG - Chr2:60769135-60769154 MsG0280009920.01.T01:intron 50.0%
!! TCCACTTTTAACCGGATCGG+GGG - Chr2:60772190-60772209 MsG0280009920.01.T01:CDS 50.0%
ACCCCCGATCCGGTTAAAAG+TGG + Chr2:60772194-60772213 None:intergenic 55.0%
ATGTCGGACTTGCAGATGGC+AGG - Chr2:60772239-60772258 MsG0280009920.01.T01:CDS 55.0%
CAATCATCGCGGTCTACGCA+TGG - Chr2:60770187-60770206 MsG0280009920.01.T01:intron 55.0%
GGGACAATAGGAGTGGAAGG+AGG - Chr2:60768929-60768948 MsG0280009920.01.T01:intron 55.0%
CGTAGACCGCGATGATTGCC+CGG + Chr2:60770185-60770204 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 60768742 60772529 60768742 ID=MsG0280009920.01;Name=MsG0280009920.01
Chr2 mRNA 60768742 60772529 60768742 ID=MsG0280009920.01.T01;Parent=MsG0280009920.01;Name=MsG0280009920.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|195
Chr2 exon 60772133 60772529 60772133 ID=MsG0280009920.01.T01:exon:34428;Parent=MsG0280009920.01.T01
Chr2 exon 60768742 60768932 60768742 ID=MsG0280009920.01.T01:exon:34427;Parent=MsG0280009920.01.T01
Chr2 CDS 60772133 60772529 60772133 ID=MsG0280009920.01.T01:cds;Parent=MsG0280009920.01.T01
Chr2 CDS 60768742 60768932 60768742 ID=MsG0280009920.01.T01:cds;Parent=MsG0280009920.01.T01
Gene Sequence

>MsG0280009920.01.T01

ATGAATAGAAATGGTTCATGCCCTTTATATGTGGGTCAAGAAACTACAGATATTGGACAAGGGTTATCTGTTATTTTTACTCCTATGGCAACAGAAGATACAGTTGTTAAGGTGAATAGGGATTTTAAGGTGAAATTTTCAGCTTCTTCAAGTTGTGGACAATCTACAGAATGGAAATTGGGTGATAGGGACAATAGGAGTGGAAGGAGGCTTATTATAGCTGGGAGTGATGGTAGTTATTTTAGAATTTTGAAGACTCCACTTGGAATTGAAGGTGTTTTAGGTAATTATAATATTAGGTTTTGTCCCTCGGAAACGGTTAATTGCGGTACTGTTGGTAATTTGCGTGAAAATGATAAGATTTTATTGGCTTTGGATGGTGAGAAATTCTTGGATGGAAAGCAAGACTGCCCATTGATTCTAGGAAGGTCATTCTTGGCAACTGTTAAAGCTTTGATTGACTTGGAGCATAAGGAGGTGTTCATAAGGTCCAACGAGTACTATTTATGCTACAAGGTGATTCCACCATCAAATGCTTACAATGAAGCCATGAAGGTTGTTGACAATTGGGAGAAATCAAAGCTATAA
Protein sequence

>MsG0280009920.01.T01

MNRNGSCPLYVGQETTDIGQGLSVIFTPMATEDTVVKVNRDFKVKFSASSSCGQSTEWKLGDRDNRSGRRLIIAGSDGSYFRILKTPLGIEGVLGNYNIRFCPSETVNCGTVGNLRENDKILLALDGEKFLDGKQDCPLILGRSFLATVKALIDLEHKEVFIRSNEYYLCYKVIPPSNAYNEAMKVVDNWEKSKL*