AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040287.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040287.01.T01 MTR_7g087430 97.059 204 6 0 15 218 197 400 1.04e-141 402
MsG0780040287.01.T01 MTR_7g087410 80.500 200 38 1 15 213 197 396 4.46e-108 316
MsG0780040287.01.T01 MTR_7g087410 80.500 200 38 1 15 213 286 485 7.58e-107 316
MsG0780040287.01.T01 MTR_7g087400 74.242 198 51 0 15 212 284 481 2.89e-100 299
MsG0780040287.01.T01 MTR_7g087370 71.287 202 58 0 15 216 255 456 3.06e-94 283
MsG0780040287.01.T01 MTR_6g027200 68.687 198 62 0 15 212 291 488 9.98e-89 270
MsG0780040287.01.T01 MTR_6g027190 70.681 191 56 0 15 205 279 469 1.41e-78 244
MsG0780040287.01.T01 MTR_3g099700 54.455 202 91 1 12 212 298 499 1.68e-73 231
MsG0780040287.01.T01 MTR_4g048000 54.211 190 87 0 15 204 320 509 2.85e-70 223
MsG0780040287.01.T01 MTR_2g088400 53.299 197 90 1 15 209 308 504 1.00e-69 221
MsG0780040287.01.T01 MTR_5g032720 56.771 192 82 1 15 205 291 482 2.46e-68 217
MsG0780040287.01.T01 MTR_2g022980 51.042 192 94 0 15 206 304 495 3.26e-65 209
MsG0780040287.01.T01 MTR_5g033100 54.737 190 86 0 15 204 311 500 2.75e-64 207
MsG0780040287.01.T01 MTR_8g069470 50.000 190 95 0 15 204 305 494 4.68e-64 207
MsG0780040287.01.T01 MTR_1g021740 50.526 190 94 0 15 204 290 479 1.93e-61 199
MsG0780040287.01.T01 MTR_5g032750 48.485 198 99 2 15 211 291 486 2.68e-61 199
MsG0780040287.01.T01 MTR_1g100180 49.474 190 96 0 15 204 297 486 2.05e-58 192
MsG0780040287.01.T01 MTR_3g099720 51.667 180 87 0 15 194 296 475 1.03e-56 187
MsG0780040287.01.T01 MTR_5g090290 46.078 204 110 0 15 218 302 505 3.23e-56 187
MsG0780040287.01.T01 MTR_6g047610 40.909 198 115 1 15 210 284 481 6.79e-49 166
MsG0780040287.01.T01 MTR_2g088400 51.948 154 74 0 15 168 308 461 7.61e-49 166
MsG0780040287.01.T01 MTR_7g082810 42.647 204 114 1 15 215 276 479 1.00e-48 166
MsG0780040287.01.T01 MTR_8g063590 47.368 190 100 0 14 203 309 498 4.54e-48 165
MsG0780040287.01.T01 MTR_6g047640 40.500 200 119 0 15 214 285 484 1.32e-47 163
MsG0780040287.01.T01 MTR_6g004220 42.932 191 109 0 15 205 280 470 3.46e-45 156
MsG0780040287.01.T01 MTR_5g087930 41.584 202 102 2 15 214 275 462 1.35e-42 149
MsG0780040287.01.T01 MTR_6g004220 42.541 181 104 0 15 195 287 467 4.35e-42 149
MsG0780040287.01.T01 MTR_6g081400 38.265 196 119 1 15 210 272 465 2.74e-41 146
MsG0780040287.01.T01 MTR_6g047640 38.235 170 105 0 45 214 296 465 3.33e-40 143
MsG0780040287.01.T01 MTR_6g081410 39.362 188 114 0 15 202 283 470 1.33e-39 142
MsG0780040287.01.T01 MTR_6g047590 41.053 190 112 0 15 204 284 473 1.39e-39 142
MsG0780040287.01.T01 MTR_7g082800 38.624 189 116 0 15 203 198 386 2.22e-39 139
MsG0780040287.01.T01 MTR_1g108990 38.220 191 118 0 15 205 281 471 3.97e-39 140
MsG0780040287.01.T01 MTR_8g106670 35.450 189 122 0 15 203 268 456 5.01e-39 140
MsG0780040287.01.T01 MTR_6g081780 38.503 187 115 0 15 201 283 469 2.62e-38 138
MsG0780040287.01.T01 MTR_6g081300 35.106 188 122 0 15 202 266 453 3.54e-38 138
MsG0780040287.01.T01 MTR_2g078930 40.449 178 106 0 15 192 299 476 6.14e-38 137
MsG0780040287.01.T01 MTR_6g081390 38.095 189 117 0 15 203 269 457 1.28e-37 136
MsG0780040287.01.T01 MTR_6g081240 36.667 180 114 0 15 194 266 445 1.46e-37 135
MsG0780040287.01.T01 MTR_1g109060 37.968 187 116 0 15 201 280 466 1.69e-37 136
MsG0780040287.01.T01 MTR_2g079030 39.326 178 108 0 15 192 336 513 3.49e-37 136
MsG0780040287.01.T01 MTR_2g079020 39.326 178 108 0 15 192 293 470 8.04e-37 134
MsG0780040287.01.T01 MTR_6g081810 37.968 187 116 0 15 201 257 443 1.28e-36 133
MsG0780040287.01.T01 MTR_1g109060 36.898 187 117 1 15 201 280 465 1.13e-35 131
MsG0780040287.01.T01 MTR_2g078990 37.640 178 111 0 15 192 116 293 1.15e-35 128
MsG0780040287.01.T01 MTR_1g108840 37.968 187 116 0 15 201 297 483 2.66e-35 130
MsG0780040287.01.T01 MTR_6g066380 38.503 187 115 0 15 201 285 471 3.03e-35 130
MsG0780040287.01.T01 MTR_2g078960 39.888 178 107 0 15 192 289 466 9.71e-35 129
MsG0780040287.01.T01 MTR_2g078970 38.202 178 110 0 15 192 287 464 2.88e-34 127
MsG0780040287.01.T01 MTR_1g108810 36.264 182 116 0 15 196 290 471 1.58e-33 125
MsG0780040287.01.T01 MTR_6g081310 36.364 187 119 0 15 201 264 450 4.37e-33 124
MsG0780040287.01.T01 MTR_5g090280 32.609 230 120 3 15 217 198 419 6.70e-30 115
MsG0780040287.01.T01 MTR_3g111020 30.675 163 111 1 37 199 331 491 1.51e-19 86.7
MsG0780040287.01.T01 MTR_0039s0080 25.359 209 151 1 15 218 294 502 4.17e-19 85.5
MsG0780040287.01.T01 MTR_5g067460 29.518 166 116 1 45 210 341 505 4.84e-19 85.5
MsG0780040287.01.T01 MTR_1g101500 29.936 157 110 0 43 199 348 504 1.54e-18 84.0
MsG0780040287.01.T01 MTR_5g010830 29.677 155 109 0 45 199 351 505 4.44e-18 82.4
MsG0780040287.01.T01 MTR_6g043810 26.341 205 144 2 15 212 287 491 5.38e-18 82.4
MsG0780040287.01.T01 MTR_6g043810 26.341 205 144 2 15 212 297 501 6.53e-18 82.0
MsG0780040287.01.T01 MTR_6g088805 29.487 156 110 0 43 198 308 463 1.18e-17 81.3
MsG0780040287.01.T01 MTR_4g027920 23.529 204 152 1 15 218 414 613 1.80e-17 80.9
MsG0780040287.01.T01 MTR_2g435930 26.203 187 138 0 15 201 291 477 4.37e-17 79.7
MsG0780040287.01.T01 MTR_6g004220 36.937 111 70 0 15 125 287 397 1.30e-16 78.2
MsG0780040287.01.T01 MTR_8g102430 29.299 157 91 2 37 193 301 437 5.65e-13 67.4
MsG0780040287.01.T01 MTR_5g011540 23.923 209 154 1 15 218 300 508 7.44e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040287.01.T01 AT1G33110 62.500 200 73 1 15 214 290 487 4.57e-86 263
MsG0780040287.01.T01 AT1G33100 62.121 198 73 1 15 212 287 482 4.92e-84 258
MsG0780040287.01.T01 AT1G33090 62.121 198 73 1 15 212 290 485 2.18e-78 243
MsG0780040287.01.T01 AT1G33080 57.789 199 82 1 15 213 290 486 2.00e-76 238
MsG0780040287.01.T01 AT1G33080 61.111 180 70 0 15 194 290 469 1.95e-71 225
MsG0780040287.01.T01 AT4G21903 51.795 195 94 0 15 209 198 392 3.54e-70 219
MsG0780040287.01.T01 AT4G21910 53.061 196 91 1 15 209 309 504 2.41e-69 220
MsG0780040287.01.T01 AT4G21910 53.061 196 91 1 15 209 309 504 2.41e-69 220
MsG0780040287.01.T01 AT4G21903 51.795 195 94 0 15 209 307 501 2.91e-69 220
MsG0780040287.01.T01 AT4G21910 53.061 196 91 1 15 209 311 506 3.83e-69 220
MsG0780040287.01.T01 AT4G21910 53.061 196 91 1 15 209 311 506 3.83e-69 220
MsG0780040287.01.T01 AT1G11670 51.282 195 95 0 15 209 305 499 1.45e-68 218
MsG0780040287.01.T01 AT1G61890 52.083 192 92 0 15 206 302 493 6.07e-67 214
MsG0780040287.01.T01 AT5G65380 54.167 192 87 1 15 205 291 482 5.18e-65 209
MsG0780040287.01.T01 AT3G21690 52.356 191 91 0 15 205 307 497 7.11e-65 209
MsG0780040287.01.T01 AT4G21903 51.323 189 92 0 15 203 307 495 9.31e-65 209
MsG0780040287.01.T01 AT1G23300 48.000 200 104 0 15 214 298 497 4.90e-64 207
MsG0780040287.01.T01 AT1G61890 53.889 180 83 0 15 194 302 481 5.08e-63 204
MsG0780040287.01.T01 AT3G26590 50.526 190 94 0 15 204 197 386 5.39e-63 201
MsG0780040287.01.T01 AT5G44050 51.795 195 93 1 15 208 294 488 9.11e-63 203
MsG0780040287.01.T01 AT3G26590 50.526 190 94 0 15 204 299 488 3.50e-62 201
MsG0780040287.01.T01 AT5G38030 49.746 197 99 0 15 211 299 495 6.48e-62 201
MsG0780040287.01.T01 AT3G03620 53.030 198 92 1 15 212 291 487 1.23e-61 200
MsG0780040287.01.T01 AT3G03620 53.030 198 92 1 15 212 291 487 1.23e-61 200
MsG0780040287.01.T01 AT1G47530 51.053 190 93 0 15 204 197 386 1.51e-61 197
MsG0780040287.01.T01 AT1G47530 51.053 190 93 0 15 204 289 478 5.04e-61 198
MsG0780040287.01.T01 AT1G12950 46.500 200 107 0 15 214 321 520 1.65e-60 197
MsG0780040287.01.T01 AT5G10420 51.010 198 96 1 15 211 292 489 1.08e-59 195
MsG0780040287.01.T01 AT4G00350 47.739 199 104 0 18 216 344 542 2.63e-58 192
MsG0780040287.01.T01 AT5G17700 46.231 199 107 0 15 213 288 486 2.42e-54 181
MsG0780040287.01.T01 AT5G17700 46.231 199 107 0 15 213 288 486 2.42e-54 181
MsG0780040287.01.T01 AT3G59030 48.148 189 98 0 15 203 306 494 1.35e-53 179
MsG0780040287.01.T01 AT4G25640 48.276 203 101 1 15 217 287 485 1.88e-48 165
MsG0780040287.01.T01 AT4G25640 48.276 203 101 1 15 217 287 485 3.23e-48 165
MsG0780040287.01.T01 AT1G61890 49.057 159 81 0 15 173 302 460 1.08e-45 158
MsG0780040287.01.T01 AT1G33110 66.667 114 38 0 15 128 290 403 7.80e-44 151
MsG0780040287.01.T01 AT1G66780 40.107 187 112 0 15 201 290 476 6.92e-41 145
MsG0780040287.01.T01 AT2G04100 39.037 187 114 0 15 201 285 471 8.16e-38 137
MsG0780040287.01.T01 AT5G52450 36.598 194 123 0 15 208 281 474 1.56e-37 136
MsG0780040287.01.T01 AT2G34360 39.080 174 106 0 35 208 296 469 3.60e-37 135
MsG0780040287.01.T01 AT1G15170 35.829 187 120 0 15 201 170 356 5.30e-37 132
MsG0780040287.01.T01 AT1G15150 36.364 187 119 0 15 201 170 356 1.53e-36 132
MsG0780040287.01.T01 AT1G15170 35.829 187 120 0 15 201 289 475 2.12e-36 133
MsG0780040287.01.T01 AT2G04100 39.011 182 111 0 15 196 285 466 4.21e-36 132
MsG0780040287.01.T01 AT1G64820 36.170 188 118 2 15 201 284 470 4.89e-36 132
MsG0780040287.01.T01 AT4G25640 50.336 149 74 0 15 163 287 435 5.72e-36 132
MsG0780040287.01.T01 AT1G15150 36.364 187 119 0 15 201 286 472 6.21e-36 132
MsG0780040287.01.T01 AT1G15160 35.602 191 115 2 15 201 286 472 2.13e-34 128
MsG0780040287.01.T01 AT1G71140 37.696 191 111 3 15 201 281 467 2.38e-34 127
MsG0780040287.01.T01 AT2G04090 36.898 187 118 0 15 201 285 471 2.49e-34 127
MsG0780040287.01.T01 AT2G34360 36.932 176 109 1 33 208 254 427 3.09e-34 127
MsG0780040287.01.T01 AT2G04070 39.362 188 112 2 15 201 282 468 5.30e-34 127
MsG0780040287.01.T01 AT2G04040 39.362 188 112 2 15 201 282 468 6.36e-34 126
MsG0780040287.01.T01 AT1G66760 36.364 187 119 0 15 201 283 469 9.91e-34 126
MsG0780040287.01.T01 AT2G04080 37.234 188 116 2 15 201 282 468 7.20e-33 124
MsG0780040287.01.T01 AT1G66760 35.519 183 118 0 15 197 155 337 1.70e-32 120
MsG0780040287.01.T01 AT1G66760 35.714 182 117 0 15 196 283 464 7.38e-32 120
MsG0780040287.01.T01 AT1G15180 35.602 191 115 2 15 201 290 476 3.01e-31 119
MsG0780040287.01.T01 AT2G04080 36.413 184 115 2 15 197 282 464 6.28e-31 118
MsG0780040287.01.T01 AT1G73700 37.245 196 123 0 15 210 279 474 1.07e-30 117
MsG0780040287.01.T01 AT3G23550 35.955 178 114 0 15 192 286 463 1.08e-30 117
MsG0780040287.01.T01 AT2G04050 36.702 188 117 2 15 201 282 468 2.31e-30 117
MsG0780040287.01.T01 AT3G23560 35.955 178 114 0 15 192 294 471 6.20e-29 113
MsG0780040287.01.T01 AT2G04066 37.692 130 80 1 72 201 35 163 1.58e-25 98.2
MsG0780040287.01.T01 AT5G17700 45.614 114 62 0 15 128 288 401 6.86e-25 101
MsG0780040287.01.T01 AT3G59030 46.847 111 59 0 15 125 306 416 2.26e-23 97.1
MsG0780040287.01.T01 AT1G71870 26.866 201 145 2 15 213 296 496 5.52e-19 85.1
MsG0780040287.01.T01 AT1G58340 27.273 176 124 2 45 218 343 516 5.74e-17 79.3
MsG0780040287.01.T01 AT4G23030 28.571 168 120 0 43 210 316 483 9.49e-17 78.6
MsG0780040287.01.T01 AT5G52050 31.818 154 105 0 45 198 326 479 1.72e-16 77.8
MsG0780040287.01.T01 AT4G29140 30.061 163 112 1 37 199 335 495 1.96e-16 77.8
MsG0780040287.01.T01 AT5G49130 30.357 168 117 0 36 203 316 483 1.91e-15 74.7
MsG0780040287.01.T01 AT2G38510 23.902 205 155 1 14 217 261 465 2.21e-15 74.7
MsG0780040287.01.T01 AT5G19700 29.448 163 113 1 37 199 315 475 1.79e-13 68.9
MsG0780040287.01.T01 AT1G15180 30.435 115 72 2 15 125 170 280 3.07e-11 62.4
MsG0780040287.01.T01 AT3G23560 35.135 111 72 0 15 125 294 404 8.74e-11 61.2

Find 46 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGCAAACTTTGCATCTT+TGG 0.128532 7:-75488750 None:intergenic
CTTCCTTTCTGTAGGGTATA+TGG 0.215347 7:+75489249 MsG0780040287.01.T01:intron
GATGATATCACTTGGTTTCA+TGG 0.286945 7:+75486979 MsG0780040287.01.T01:CDS
ATTCCTGTTGGGATTGTTCT+TGG 0.302775 7:+75489125 MsG0780040287.01.T01:CDS
GTCCTTACATCATTCACAAT+TGG 0.324954 7:+75488782 MsG0780040287.01.T01:CDS
GGAAATGCAGGAGTTGCTAT+TGG 0.356337 7:+75489044 MsG0780040287.01.T01:intron
CTAGGTTGTTATTACATCAT+AGG 0.372662 7:+75489101 MsG0780040287.01.T01:CDS
ATATGGATTGGTATGTTGTT+TGG 0.377225 7:+75489266 MsG0780040287.01.T01:CDS
TCGTATTAATAAGTGGTCTA+AGG 0.405797 7:+75489649 MsG0780040287.01.T01:CDS
GATGCGACTGTTTCATGATC+AGG 0.416412 7:-75489677 None:intergenic
TCCTTACATCATTCACAATT+GGG 0.421733 7:+75488783 MsG0780040287.01.T01:CDS
TAATCAGCTACAAAACTGAT+TGG 0.436530 7:+75489318 MsG0780040287.01.T01:CDS
TGAGGCCACGTCCTTGTTTG+TGG 0.438464 7:-75488861 None:intergenic
CAAAACTGATTGGGACAAAC+AGG 0.440943 7:+75489328 MsG0780040287.01.T01:CDS
TTTCTGTAGGGTATATGGAT+TGG 0.444215 7:+75489254 MsG0780040287.01.T01:intron
ACATCATAGGTATTCCTGTT+GGG 0.447520 7:+75489114 MsG0780040287.01.T01:CDS
ATTTACAGTCTCAACATCAA+TGG 0.464897 7:+75486947 MsG0780040287.01.T01:intron
GCAGGAGTTGCTATTGGAGC+AGG 0.468595 7:+75489050 MsG0780040287.01.T01:intron
AAATTGATGCTCTATCCATA+TGG 0.498228 7:+75486757 MsG0780040287.01.T01:CDS
CTTAATTTGCAGTGTTAGAG+TGG 0.505711 7:+75488703 MsG0780040287.01.T01:intron
TACTCACCTTGACTTGCAAA+TGG 0.506891 7:-75489157 None:intergenic
TACATCATAGGTATTCCTGT+TGG 0.507006 7:+75489113 MsG0780040287.01.T01:CDS
TTACCAAGAACAATCCCAAC+AGG 0.507831 7:-75489128 None:intergenic
GTTAGAGTGGCAAATGAGCT+TGG 0.511731 7:+75488716 MsG0780040287.01.T01:CDS
ACCCAATTGTGAATGATGTA+AGG 0.512296 7:-75488784 None:intergenic
AGTATAGAAACTGCTAATAG+AGG 0.517489 7:-75488902 None:intergenic
AATCAGCTACAAAACTGATT+GGG 0.519497 7:+75489319 MsG0780040287.01.T01:CDS
CTCGGAATCGTATTAATAAG+TGG 0.530392 7:+75489642 MsG0780040287.01.T01:CDS
AGTTTACCATTTGCAAGTCA+AGG 0.535482 7:+75489151 MsG0780040287.01.T01:CDS
GTGGCAAATGAGCTTGGAAA+AGG 0.536358 7:+75488722 MsG0780040287.01.T01:CDS
ACAGTCTCAACATCAATGGA+TGG 0.543286 7:+75486951 MsG0780040287.01.T01:intron
GAATTAGTACCTGAGAGTAC+AGG 0.558659 7:-75488941 None:intergenic
ATGTGCAGGTAACTATTGCT+CGG 0.559960 7:+75489624 MsG0780040287.01.T01:intron
AGTGTTCAACCTGTACTCTC+AGG 0.564512 7:+75488932 MsG0780040287.01.T01:CDS
ATGCGACTGTTTCATGATCA+GGG 0.570765 7:-75489676 None:intergenic
AAGGACGTGGCCTCAGCTGT+TGG 0.580851 7:+75488869 MsG0780040287.01.T01:CDS
CAGTCTCAACATCAATGGAT+GGG 0.581906 7:+75486952 MsG0780040287.01.T01:intron
TATTAATAAGTGGTCTAAGG+TGG 0.600657 7:+75489652 MsG0780040287.01.T01:CDS
CTATGATGTAATAACAACCT+AGG 0.609684 7:-75489100 None:intergenic
ATTGTAGCATATGTGAACCT+AGG 0.624206 7:+75489083 MsG0780040287.01.T01:CDS
TTGGTTTCATGGCTGCAGCA+AGG 0.634709 7:+75486990 MsG0780040287.01.T01:CDS
CAGGAGTTGCTATTGGAGCA+GGG 0.643737 7:+75489051 MsG0780040287.01.T01:intron
TGACAAATCACCAACAGCTG+AGG 0.652453 7:-75488879 None:intergenic
TGGGAAATGATGATATCACT+TGG 0.667441 7:+75486971 MsG0780040287.01.T01:CDS
TCTTGAGCTATGGTACAACA+CGG 0.751011 7:+75486693 None:intergenic
GAGTTGCTATTGGAGCAGGG+TGG 0.770495 7:+75489054 MsG0780040287.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAATACATAAAAATTTA+CGG - Chr7:75487685-75487704 None:intergenic 10.0%
!! TTTAAATAGAAAAAAGTTTA+CGG - Chr7:75487656-75487675 None:intergenic 10.0%
!!! TAAACTTTTTTCTATTTAAA+CGG + Chr7:75487656-75487675 MsG0780040287.01.T01:intron 10.0%
!! AATGTTAAATGTTAATTTCA+TGG - Chr7:75489022-75489041 None:intergenic 15.0%
!! ATAAGAAAAATAAAAACAGA+AGG - Chr7:75488811-75488830 None:intergenic 15.0%
!!! AATCCTTTTAAATAGAAAAA+TGG - Chr7:75487550-75487569 None:intergenic 15.0%
!!! AATTATGTTGTTTTTTACTA+TGG + Chr7:75488661-75488680 MsG0780040287.01.T01:intron 15.0%
!!! ATTAGTAAACTTTTCTATTT+AGG + Chr7:75487419-75487438 MsG0780040287.01.T01:intron 15.0%
!!! GAAATTAACATTTAACATTT+TGG + Chr7:75489023-75489042 MsG0780040287.01.T01:intron 15.0%
!!! TTAGTAAACTTTTCTATTTA+GGG + Chr7:75487420-75487439 MsG0780040287.01.T01:intron 15.0%
!! AAATATCTTCGTATACTTTA+TGG - Chr7:75488493-75488512 None:intergenic 20.0%
!! CATAAAAAGTTCGATTAAAT+TGG + Chr7:75488592-75488611 MsG0780040287.01.T01:intron 20.0%
!! CCAATAAAGCAAAAAAAAAA+TGG - Chr7:75489371-75489390 None:intergenic 20.0%
!! GTTCGAATAAAAATATTAAC+AGG + Chr7:75487752-75487771 MsG0780040287.01.T01:intron 20.0%
!! TAAAAAACAACATAATTGTG+TGG - Chr7:75488658-75488677 None:intergenic 20.0%
!! TAACTATAATATGCTTAAGA+TGG - Chr7:75489429-75489448 None:intergenic 20.0%
!! TGATAGCATAAAAAAGTTTA+CGG - Chr7:75487573-75487592 None:intergenic 20.0%
!! TGCAATTACTACATATTTAT+TGG - Chr7:75487961-75487980 None:intergenic 20.0%
!!! AAGAATTTAATTTTCATGCA+CGG + Chr7:75489461-75489480 MsG0780040287.01.T01:intron 20.0%
!!! AGTCCATTTTTCTATTTAAA+AGG + Chr7:75487544-75487563 MsG0780040287.01.T01:intron 20.0%
!!! CCATTTTTTTTTTGCTTTAT+TGG + Chr7:75489368-75489387 MsG0780040287.01.T01:intron 20.0%
!!! TATTTTTATTCGAACTCTTT+TGG - Chr7:75487747-75487766 None:intergenic 20.0%
!!! TGGTGGATTTTATATATTTA+AGG + Chr7:75488549-75488568 MsG0780040287.01.T01:intron 20.0%
!!! TTATATTTTTACCACAAACA+AGG + Chr7:75488850-75488869 MsG0780040287.01.T01:CDS 20.0%
! AAAAAGTTCGATTAAATTGG+TGG + Chr7:75488595-75488614 MsG0780040287.01.T01:intron 25.0%
! AAACTTCTATTGTCAATGTA+TGG + Chr7:75488252-75488271 MsG0780040287.01.T01:intron 25.0%
! AAATTAAGAAAGGCAAAAGT+TGG - Chr7:75488691-75488710 None:intergenic 25.0%
! AATAATTATGTTTCATGTGC+AGG + Chr7:75489610-75489629 MsG0780040287.01.T01:intron 25.0%
! AATACAACCAAAACATAAAG+TGG - Chr7:75486834-75486853 None:intergenic 25.0%
! ACCAACATATTGTAGAAAAA+TGG - Chr7:75488010-75488029 None:intergenic 25.0%
! AGAAAAGTTTACTAATCGTT+GGG - Chr7:75487415-75487434 None:intergenic 25.0%
! AGATATATAGTAGTGTCTAA+TGG - Chr7:75489228-75489247 None:intergenic 25.0%
! ATAATATGCTTAAGATGGAA+TGG - Chr7:75489424-75489443 None:intergenic 25.0%
! ATGAATACATACGATTTGAT+TGG - Chr7:75487492-75487511 None:intergenic 25.0%
! CTTAATAGTTGAGACTAAAT+TGG + Chr7:75488529-75488548 MsG0780040287.01.T01:intron 25.0%
! GACTATCTTATATATATTGC+AGG - Chr7:75487528-75487547 None:intergenic 25.0%
! TAGAAAAGTTTACTAATCGT+TGG - Chr7:75487416-75487435 None:intergenic 25.0%
! TAGTACAACTTAGATGATAA+AGG - Chr7:75487138-75487157 None:intergenic 25.0%
! TATCATCTAAGTTGTACTAT+GGG + Chr7:75487139-75487158 MsG0780040287.01.T01:intron 25.0%
! TCTTTCGTAATTTATCTTGA+TGG + Chr7:75488172-75488191 MsG0780040287.01.T01:intron 25.0%
! TTATCATCTAAGTTGTACTA+TGG + Chr7:75487138-75487157 MsG0780040287.01.T01:intron 25.0%
! TTGAAAATACTAATCGTTGA+TGG + Chr7:75488105-75488124 MsG0780040287.01.T01:intron 25.0%
! TTTCTATGCTGTCTATAATT+TGG + Chr7:75487611-75487630 MsG0780040287.01.T01:intron 25.0%
!! GACATTAACTACGATTTTAA+TGG - Chr7:75487374-75487393 None:intergenic 25.0%
!! TACTTTATGGACTAAATTGA+TGG - Chr7:75488480-75488499 None:intergenic 25.0%
!! TTTTATATACTTTAGCGAGT+AGG - Chr7:75488431-75488450 None:intergenic 25.0%
!!! ACCATTTTTCTACAATATGT+TGG + Chr7:75488006-75488025 MsG0780040287.01.T01:intron 25.0%
!!! ATTTAACATTTTGGAAATGC+AGG + Chr7:75489032-75489051 MsG0780040287.01.T01:intron 25.0%
!!! CAACTCTAGCTTTATAATAA+AGG - Chr7:75487186-75487205 None:intergenic 25.0%
AAACATAGCCTTTGAATCAA+CGG - Chr7:75487309-75487328 None:intergenic 30.0%
AAATTGATGCTCTATCCATA+TGG + Chr7:75486757-75486776 MsG0780040287.01.T01:CDS 30.0%
AATAGTTGAGACTAAATTGG+TGG + Chr7:75488532-75488551 MsG0780040287.01.T01:intron 30.0%
AATCAGCTACAAAACTGATT+GGG + Chr7:75489319-75489338 MsG0780040287.01.T01:CDS 30.0%
AGATCATATAAATGCTTAGG+AGG - Chr7:75487248-75487267 None:intergenic 30.0%
AGGAATATTTCGACATGTTA+GGG - Chr7:75487111-75487130 None:intergenic 30.0%
AGTATAGAAACTGCTAATAG+AGG - Chr7:75488905-75488924 None:intergenic 30.0%
AGTCTCAACTATTAAGATAC+AGG - Chr7:75488525-75488544 None:intergenic 30.0%
ATATCTTCTTCCTTTCTGTA+GGG + Chr7:75489242-75489261 MsG0780040287.01.T01:intron 30.0%
ATGAAATGTGAACATGCAAA+AGG - Chr7:75486787-75486806 None:intergenic 30.0%
ATGCTGTCTATAATTTGGTT+AGG + Chr7:75487616-75487635 MsG0780040287.01.T01:intron 30.0%
ATTTACAGTCTCAACATCAA+TGG + Chr7:75486947-75486966 MsG0780040287.01.T01:intron 30.0%
CTAACACTGCAAATTAAGAA+AGG - Chr7:75488701-75488720 None:intergenic 30.0%
CTATGATGTAATAACAACCT+AGG - Chr7:75489103-75489122 None:intergenic 30.0%
CTGAGATCATATAAATGCTT+AGG - Chr7:75487251-75487270 None:intergenic 30.0%
GATCATATAAATGCTTAGGA+GGG - Chr7:75487247-75487266 None:intergenic 30.0%
TAATCAGCTACAAAACTGAT+TGG + Chr7:75489318-75489337 MsG0780040287.01.T01:CDS 30.0%
TAGCAATGAATTCACATCAA+CGG - Chr7:75487274-75487293 None:intergenic 30.0%
TATATCTTCTTCCTTTCTGT+AGG + Chr7:75489241-75489260 MsG0780040287.01.T01:intron 30.0%
TATTAATAAGTGGTCTAAGG+TGG + Chr7:75489652-75489671 MsG0780040287.01.T01:CDS 30.0%
TCCTTACATCATTCACAATT+GGG + Chr7:75488783-75488802 MsG0780040287.01.T01:CDS 30.0%
TCGTATTAATAAGTGGTCTA+AGG + Chr7:75489649-75489668 MsG0780040287.01.T01:CDS 30.0%
TGCATTCAATACACACTAAT+TGG - Chr7:75487859-75487878 None:intergenic 30.0%
TTACATTGCTTCTTTGTTAG+TGG + Chr7:75489395-75489414 MsG0780040287.01.T01:intron 30.0%
TTCGTGATAAACAACATTTG+AGG - Chr7:75488151-75488170 None:intergenic 30.0%
! CTAGGTTGTTATTACATCAT+AGG + Chr7:75489101-75489120 MsG0780040287.01.T01:CDS 30.0%
! GTTGTAGTCATTGTTTGTTT+TGG + Chr7:75488356-75488375 MsG0780040287.01.T01:intron 30.0%
! TCGGTCTAAAAAGTTTTACA+CGG + Chr7:75489484-75489503 MsG0780040287.01.T01:intron 30.0%
! TGTTTGTCCACTTTATGTTT+TGG + Chr7:75486824-75486843 MsG0780040287.01.T01:intron 30.0%
!! ATATGGATTGGTATGTTGTT+TGG + Chr7:75489266-75489285 MsG0780040287.01.T01:CDS 30.0%
!! ATTTAATTTTCATGCACGGT+CGG + Chr7:75489465-75489484 MsG0780040287.01.T01:intron 30.0%
!! CAAGCTATTTTGTTTAGAGT+TGG - Chr7:75486878-75486897 None:intergenic 30.0%
!!! ACGGTATTGATTCTTTTAAC+AGG + Chr7:75486712-75486731 MsG0780040287.01.T01:CDS 30.0%
!!! TTGTACACTTTTTTTGTTGC+AGG - Chr7:75487720-75487739 None:intergenic 30.0%
AATCCATATACCCTACAGAA+AGG - Chr7:75489255-75489274 None:intergenic 35.0%
AATGCTTAGGAGGGAAAAAT+AGG - Chr7:75487238-75487257 None:intergenic 35.0%
ACATCATAGGTATTCCTGTT+GGG + Chr7:75489114-75489133 MsG0780040287.01.T01:CDS 35.0%
ACCCAATTGTGAATGATGTA+AGG - Chr7:75488787-75488806 None:intergenic 35.0%
ACTTAGATGATAAAGGTTGC+AGG - Chr7:75487131-75487150 None:intergenic 35.0%
AGTTTACCATTTGCAAGTCA+AGG + Chr7:75489151-75489170 MsG0780040287.01.T01:CDS 35.0%
ATCTTAAGCGACGTAAACAA+AGG - Chr7:75486916-75486935 None:intergenic 35.0%
ATGCTTAGGAGGGAAAAATA+GGG - Chr7:75487237-75487256 None:intergenic 35.0%
ATTGTAGCATATGTGAACCT+AGG + Chr7:75489083-75489102 MsG0780040287.01.T01:CDS 35.0%
CAGGAATATTTCGACATGTT+AGG - Chr7:75487112-75487131 None:intergenic 35.0%
CATGCAAAAGGATTACCATA+TGG - Chr7:75486775-75486794 None:intergenic 35.0%
CTCGGAATCGTATTAATAAG+TGG + Chr7:75489642-75489661 MsG0780040287.01.T01:CDS 35.0%
GATGATATCACTTGGTTTCA+TGG + Chr7:75486979-75486998 MsG0780040287.01.T01:CDS 35.0%
GGAAAAATAGGGAGTGATTA+GGG - Chr7:75487226-75487245 None:intergenic 35.0%
GTCCTTACATCATTCACAAT+TGG + Chr7:75488782-75488801 MsG0780040287.01.T01:CDS 35.0%
TACATCATAGGTATTCCTGT+TGG + Chr7:75489113-75489132 MsG0780040287.01.T01:CDS 35.0%
TGGGAAATGATGATATCACT+TGG + Chr7:75486971-75486990 MsG0780040287.01.T01:CDS 35.0%
TTAAGGACTACTCATAGAGT+TGG + Chr7:75488566-75488585 MsG0780040287.01.T01:intron 35.0%
TTACTAATCGTTGGGAGTTA+TGG - Chr7:75487407-75487426 None:intergenic 35.0%
TTTCTGTAGGGTATATGGAT+TGG + Chr7:75489254-75489273 MsG0780040287.01.T01:intron 35.0%
! ATACTAATCGTTGATGGAGA+TGG + Chr7:75488111-75488130 MsG0780040287.01.T01:intron 35.0%
! GATTCTTTTAACAGGCAACA+TGG + Chr7:75486720-75486739 MsG0780040287.01.T01:CDS 35.0%
! TACTCTTAGTGTTGAGAAGT+GGG + Chr7:75487064-75487083 MsG0780040287.01.T01:intron 35.0%
! TGTTCAGATCAACTTTTACG+TGG + Chr7:75488290-75488309 MsG0780040287.01.T01:intron 35.0%
! TTTTACTGCTACGCTCTTTA+GGG - Chr7:75487040-75487059 None:intergenic 35.0%
!! CTTAATTTGCAGTGTTAGAG+TGG + Chr7:75488703-75488722 MsG0780040287.01.T01:intron 35.0%
AACTGACCATGCGAAAATAC+AGG - Chr7:75488048-75488067 None:intergenic 40.0%
ACAGTCTCAACATCAATGGA+TGG + Chr7:75486951-75486970 MsG0780040287.01.T01:intron 40.0%
ATGACGCATCTGTATGAGAT+AGG - Chr7:75487346-75487365 None:intergenic 40.0%
ATGCGACTGTTTCATGATCA+GGG - Chr7:75489679-75489698 None:intergenic 40.0%
ATGTGCAGGTAACTATTGCT+CGG + Chr7:75489624-75489643 MsG0780040287.01.T01:intron 40.0%
ATTCCTGTTGGGATTGTTCT+TGG + Chr7:75489125-75489144 MsG0780040287.01.T01:CDS 40.0%
CAAAACTGATTGGGACAAAC+AGG + Chr7:75489328-75489347 MsG0780040287.01.T01:CDS 40.0%
CACTGCAAACTTTGCATCTT+TGG - Chr7:75488753-75488772 None:intergenic 40.0%
CAGTCTCAACATCAATGGAT+GGG + Chr7:75486952-75486971 MsG0780040287.01.T01:intron 40.0%
CTTCCTTTCTGTAGGGTATA+TGG + Chr7:75489249-75489268 MsG0780040287.01.T01:intron 40.0%
GGGAAAAATAGGGAGTGATT+AGG - Chr7:75487227-75487246 None:intergenic 40.0%
TATTTCGACATGTTAGGGCA+TGG - Chr7:75487106-75487125 None:intergenic 40.0%
TCCAGAGTCACTTCAAAACA+AGG + Chr7:75488081-75488100 MsG0780040287.01.T01:intron 40.0%
TTACCAAGAACAATCCCAAC+AGG - Chr7:75489131-75489150 None:intergenic 40.0%
TTAGGGCAAACATGATAGCT+TGG - Chr7:75487209-75487228 None:intergenic 40.0%
! ACTCTTAGTGTTGAGAAGTG+GGG + Chr7:75487065-75487084 MsG0780040287.01.T01:intron 40.0%
! CAGATCAACTTTTACGTGGT+TGG + Chr7:75488294-75488313 MsG0780040287.01.T01:intron 40.0%
! GAATTAGTACCTGAGAGTAC+AGG - Chr7:75488944-75488963 None:intergenic 40.0%
! GTACTCTTAGTGTTGAGAAG+TGG + Chr7:75487063-75487082 MsG0780040287.01.T01:intron 40.0%
! GTTTTACTGCTACGCTCTTT+AGG - Chr7:75487041-75487060 None:intergenic 40.0%
! TTTTACCACAAACAAGGACG+TGG + Chr7:75488856-75488875 MsG0780040287.01.T01:CDS 40.0%
!! AATCTCAGCCGTTGATTCAA+AGG + Chr7:75487298-75487317 MsG0780040287.01.T01:intron 40.0%
!! TACTCACCTTGACTTGCAAA+TGG - Chr7:75489160-75489179 None:intergenic 40.0%
!!! ACCTTGTTTTGAAGTGACTC+TGG - Chr7:75488085-75488104 None:intergenic 40.0%
AGTGTTCAACCTGTACTCTC+AGG + Chr7:75488932-75488951 MsG0780040287.01.T01:CDS 45.0%
GATGCGACTGTTTCATGATC+AGG - Chr7:75489680-75489699 None:intergenic 45.0%
GGAAATGCAGGAGTTGCTAT+TGG + Chr7:75489044-75489063 MsG0780040287.01.T01:intron 45.0%
GTGGCAAATGAGCTTGGAAA+AGG + Chr7:75488722-75488741 MsG0780040287.01.T01:CDS 45.0%
GTTAGAGTGGCAAATGAGCT+TGG + Chr7:75488716-75488735 MsG0780040287.01.T01:CDS 45.0%
GTTGAGAAGTGGGGAATTGT+GGG + Chr7:75487074-75487093 MsG0780040287.01.T01:intron 45.0%
TGACAAATCACCAACAGCTG+AGG - Chr7:75488882-75488901 None:intergenic 45.0%
TGTTGAGAAGTGGGGAATTG+TGG + Chr7:75487073-75487092 MsG0780040287.01.T01:intron 45.0%
! TCGAGTCCTGTATTTTCGCA+TGG + Chr7:75488039-75488058 MsG0780040287.01.T01:intron 45.0%
TTGGTTTCATGGCTGCAGCA+AGG + Chr7:75486990-75487009 MsG0780040287.01.T01:CDS 50.0%
TTTACGTGGTTGGACCCATG+CGG + Chr7:75488304-75488323 MsG0780040287.01.T01:intron 50.0%
! CAGGAGTTGCTATTGGAGCA+GGG + Chr7:75489051-75489070 MsG0780040287.01.T01:intron 50.0%
AATGACCCGTGCTACCGCAT+GGG - Chr7:75488321-75488340 None:intergenic 55.0%
! GAGTTGCTATTGGAGCAGGG+TGG + Chr7:75489054-75489073 MsG0780040287.01.T01:CDS 55.0%
! GCAGGAGTTGCTATTGGAGC+AGG + Chr7:75489050-75489069 MsG0780040287.01.T01:intron 55.0%
! TGAGGCCACGTCCTTGTTTG+TGG - Chr7:75488864-75488883 None:intergenic 55.0%
AAGGACGTGGCCTCAGCTGT+TGG + Chr7:75488869-75488888 MsG0780040287.01.T01:CDS 60.0%
CAATGACCCGTGCTACCGCA+TGG - Chr7:75488322-75488341 None:intergenic 60.0%
CATGCGGTAGCACGGGTCAT+TGG + Chr7:75488320-75488339 MsG0780040287.01.T01:intron 60.0%
GTTGGACCCATGCGGTAGCA+CGG + Chr7:75488312-75488331 MsG0780040287.01.T01:intron 60.0%
TTGGACCCATGCGGTAGCAC+GGG + Chr7:75488313-75488332 MsG0780040287.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 75486702 75489709 75486702 ID=MsG0780040287.01;Name=MsG0780040287.01
Chr7 mRNA 75486702 75489709 75486702 ID=MsG0780040287.01.T01;Parent=MsG0780040287.01;Name=MsG0780040287.01.T01;_AED=0.49;_eAED=0.53;_QI=0|0|0|1|1|1|6|0|218
Chr7 exon 75486702 75486778 75486702 ID=MsG0780040287.01.T01:exon:14376;Parent=MsG0780040287.01.T01
Chr7 exon 75486955 75487011 75486955 ID=MsG0780040287.01.T01:exon:14377;Parent=MsG0780040287.01.T01
Chr7 exon 75488715 75488953 75488715 ID=MsG0780040287.01.T01:exon:14378;Parent=MsG0780040287.01.T01
Chr7 exon 75489054 75489172 75489054 ID=MsG0780040287.01.T01:exon:14379;Parent=MsG0780040287.01.T01
Chr7 exon 75489263 75489349 75489263 ID=MsG0780040287.01.T01:exon:14380;Parent=MsG0780040287.01.T01
Chr7 exon 75489632 75489709 75489632 ID=MsG0780040287.01.T01:exon:14381;Parent=MsG0780040287.01.T01
Chr7 CDS 75486702 75486778 75486702 ID=MsG0780040287.01.T01:cds;Parent=MsG0780040287.01.T01
Chr7 CDS 75486955 75487011 75486955 ID=MsG0780040287.01.T01:cds;Parent=MsG0780040287.01.T01
Chr7 CDS 75488715 75488953 75488715 ID=MsG0780040287.01.T01:cds;Parent=MsG0780040287.01.T01
Chr7 CDS 75489054 75489172 75489054 ID=MsG0780040287.01.T01:cds;Parent=MsG0780040287.01.T01
Chr7 CDS 75489263 75489349 75489263 ID=MsG0780040287.01.T01:cds;Parent=MsG0780040287.01.T01
Chr7 CDS 75489632 75489709 75489632 ID=MsG0780040287.01.T01:cds;Parent=MsG0780040287.01.T01
Gene Sequence

>MsG0780040287.01.T01

ATGGTACAACACGGTATTGATTCTTTTAACAGGCAACATGGAAATGCAGAGATTCAAATTGATGCTCTATCCATATGTCTCAACATCAATGGATGGGAAATGATGATATCACTTGGTTTCATGGCTGCAGCAAGTGTTAGAGTGGCAAATGAGCTTGGAAAAGGAAGTGCCAAAGATGCAAAGTTTGCAGTGAACATGATAGTCCTTACATCATTCACAATTGGGTTCCTTCTGTTTTTATTTTTCTTATTTTTTAGAGAAAGACTTGCTTATATTTTTACCACAAACAAGGACGTGGCCTCAGCTGTTGGTGATTTGTCACCTCTATTAGCAGTTTCTATACTACTAAACAGTGTTCAACCTGTACTCTCAGGAGTTGCTATTGGAGCAGGGTGGCAAAGTATTGTAGCATATGTGAACCTAGGTTGTTATTACATCATAGGTATTCCTGTTGGGATTGTTCTTGGTAAAGTTTACCATTTGCAAGTCAAGGGTATATGGATTGGTATGTTGTTTGGAACACTAATGCAAACTATTATACTACTCATAATCAGCTACAAAACTGATTGGGACAAACAGGTAACTATTGCTCGGAATCGTATTAATAAGTGGTCTAAGGTGGACCCTGATCATGAAACAGTCGCATCAGATAATTAG

Protein sequence

>MsG0780040287.01.T01

MVQHGIDSFNRQHGNAEIQIDALSICLNINGWEMMISLGFMAAASVRVANELGKGSAKDAKFAVNMIVLTSFTIGFLLFLFFLFFRERLAYIFTTNKDVASAVGDLSPLLAVSILLNSVQPVLSGVAIGAGWQSIVAYVNLGCYYIIGIPVGIVLGKVYHLQVKGIWIGMLFGTLMQTIILLIISYKTDWDKQVTIARNRINKWSKVDPDHETVASDN*