AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014115.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014115.01.T01 MTR_3g050500 66.148 257 59 6 39 283 306 546 5.21e-98 309
MsG0380014115.01.T01 MTR_3g051060 47.881 236 75 6 42 277 351 538 6.62e-51 183
MsG0380014115.01.T01 MTR_5g085340 31.227 269 143 7 38 300 340 572 4.77e-26 111
MsG0380014115.01.T01 MTR_3g058570 40.833 120 64 2 169 284 80 196 3.46e-20 92.4
MsG0380014115.01.T01 MTR_5g085350 37.405 131 78 3 171 299 422 550 3.71e-20 93.6
MsG0380014115.01.T01 MTR_5g085350 37.405 131 78 3 171 299 435 563 4.07e-20 93.6
MsG0380014115.01.T01 MTR_2g020510 38.462 104 60 2 174 277 391 490 1.23e-14 76.6
MsG0380014115.01.T01 MTR_2g020450 37.500 104 61 2 174 277 394 493 1.26e-13 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 73 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATGTTCTTTATAAATTT+TGG 0.128398 3:-50039979 MsG0380014115.01.T01:CDS
AAGTGGCGTAGTTGAAATTT+TGG 0.236991 3:-50035418 MsG0380014115.01.T01:CDS
CATGTTCAGTGTTAGTTTCA+TGG 0.244323 3:+50035223 None:intergenic
AGGTATTCCTGTCAAAGTTT+TGG 0.292657 3:-50039950 MsG0380014115.01.T01:CDS
CGTCTTTCATCTTATAGTTC+AGG 0.293825 3:+50032677 None:intergenic
CAAACCATGTATGCGGTATA+AGG 0.328614 3:+50036989 None:intergenic
CGCAAGTTGTTGAGGGGTTG+TGG 0.348606 3:-50035164 MsG0380014115.01.T01:CDS
TTCAAGCACACTCATCATTT+CGG 0.354541 3:+50035266 None:intergenic
GTGGGACATCAAGTGGTATA+AGG 0.386998 3:-50035001 MsG0380014115.01.T01:intron
TTGTTGAGGGGTTGTGGGAG+AGG 0.395189 3:-50035158 MsG0380014115.01.T01:CDS
GTTAAGAAGAACCACATATA+TGG 0.395606 3:-50037043 MsG0380014115.01.T01:CDS
GAAAACTCTTGGAAGGTATC+TGG 0.399144 3:-50035042 MsG0380014115.01.T01:CDS
ACCATCGATGTCGGTTCCTA+TGG 0.407692 3:-50032981 MsG0380014115.01.T01:CDS
GTTGTGGGAGAGGCTTTCTA+TGG 0.410974 3:-50035148 MsG0380014115.01.T01:CDS
CTTATTACTTGTAGAAATGA+AGG 0.412792 3:-50035355 MsG0380014115.01.T01:CDS
TTCATTTCTTCTTTATCAAA+GGG 0.416928 3:+50036956 None:intergenic
TTCTTGAAGTCCTTCCAAGC+AGG 0.425228 3:+50032538 None:intergenic
TGTTCTTACTAGCTTCCATT+TGG 0.435951 3:+50036900 None:intergenic
AGAGCTTAATTTAAAAGTAA+AGG 0.446639 3:-50035394 MsG0380014115.01.T01:CDS
TTTCATTTCTTCTTTATCAA+AGG 0.446640 3:+50036955 None:intergenic
GGGAGAAGGAAATCAAGAAA+TGG 0.450021 3:-50035493 MsG0380014115.01.T01:CDS
TTTGCATCCAAAACTTTGAC+AGG 0.450345 3:+50039943 None:intergenic
ATATGCAGCCATGTGTAAAA+TGG 0.451379 3:+50035080 None:intergenic
AAATGTGAAACAGGCTGAAA+AGG 0.461566 3:-50032864 MsG0380014115.01.T01:CDS
ACATGCTGAAAATGTGAAAC+AGG 0.467756 3:-50032873 MsG0380014115.01.T01:CDS
TTCTACTACAAATGCTGAGT+TGG 0.471814 3:-50032912 MsG0380014115.01.T01:CDS
GCATCGACAACGAAAACTCT+TGG 0.474914 3:-50035053 MsG0380014115.01.T01:CDS
TGCCCTTAGGCATGAGACTA+AGG 0.475397 3:-50032515 MsG0380014115.01.T01:CDS
CTCATGAGATCTTTGTTGAA+GGG 0.479977 3:-50032612 MsG0380014115.01.T01:CDS
GCTCATGAGATCTTTGTTGA+AGG 0.482072 3:-50032613 MsG0380014115.01.T01:CDS
ATCTGTCGAAGAACAATCTC+AGG 0.482559 3:-50032650 MsG0380014115.01.T01:CDS
TCATCTTATAGTTCAGGTAC+CGG 0.495531 3:+50032683 None:intergenic
ACTCCTTAGTCTCATGCCTA+AGG 0.498232 3:+50032512 None:intergenic
AATTCCTTATACCGCATACA+TGG 0.502973 3:-50036993 MsG0380014115.01.T01:CDS
GCAAGTTGTTGAGGGGTTGT+GGG 0.506150 3:-50035163 MsG0380014115.01.T01:CDS
CCGTTATTAGTCGTTTCCAT+AGG 0.509180 3:+50032965 None:intergenic
ATACCGCATACATGGTTTGT+GGG 0.513187 3:-50036985 MsG0380014115.01.T01:CDS
CCTATGGAAACGACTAATAA+CGG 0.513604 3:-50032965 MsG0380014115.01.T01:CDS
TATACCGCATACATGGTTTG+TGG 0.514137 3:-50036986 MsG0380014115.01.T01:CDS
TGCAGACATCAAGCGCCAAA+TGG 0.520081 3:-50036915 MsG0380014115.01.T01:CDS
GTAAAGGCATCTGACAAGAA+AGG 0.522807 3:-50035378 MsG0380014115.01.T01:CDS
CTACAAATGCTGAGTTGGAA+AGG 0.525971 3:-50032907 MsG0380014115.01.T01:CDS
TACGCAACCGCAAGTTGTTG+AGG 0.533144 3:-50035172 MsG0380014115.01.T01:CDS
TCGACTTCGTATTGAAGAAG+AGG 0.534766 3:-50032467 MsG0380014115.01.T01:CDS
ACGCAACCGCAAGTTGTTGA+GGG 0.537910 3:-50035171 MsG0380014115.01.T01:CDS
TTCTAGACTTAAGCTCTGAA+AGG 0.540002 3:+50035122 None:intergenic
CTCCTTAGTCTCATGCCTAA+GGG 0.540727 3:+50032513 None:intergenic
CTGAAAAGGATATAATCCTC+TGG 0.541426 3:-50032850 MsG0380014115.01.T01:CDS
TAAAGAAATTTGCTGTGAGC+CGG 0.552199 3:-50032702 MsG0380014115.01.T01:CDS
AAAGCAATATGAAACTGCTC+AGG 0.554874 3:+50032580 None:intergenic
TCTTGAAGTCCTTCCAAGCA+GGG 0.564686 3:+50032539 None:intergenic
GATGTCCCACATCATTTGCA+TGG 0.565189 3:+50035014 None:intergenic
TCAGAGCTTAAGTCTAGAAG+TGG 0.566023 3:-50035118 MsG0380014115.01.T01:CDS
TATTTGCTTGCAGCAAAACA+TGG 0.566438 3:-50035294 MsG0380014115.01.T01:CDS
CACAACCCCTCAACAACTTG+CGG 0.571050 3:+50035165 None:intergenic
CGACAACGAAAACTCTTGGA+AGG 0.585282 3:-50035049 MsG0380014115.01.T01:CDS
TCCATAGGAACCGACATCGA+TGG 0.585893 3:+50032980 None:intergenic
AGAGTTGACCACCATATATG+TGG 0.592664 3:+50037032 None:intergenic
CGCAACCGCAAGTTGTTGAG+GGG 0.606866 3:-50035170 MsG0380014115.01.T01:CDS
GAATTACAAGCAAAGAAAAG+TGG 0.611961 3:-50035333 MsG0380014115.01.T01:CDS
GTGCGGCCATGCAAATGATG+TGG 0.618816 3:-50035020 MsG0380014115.01.T01:CDS
GGTAATCATTCTCTTGCCAG+AGG 0.623476 3:+50032834 None:intergenic
CTCTTGGAAGGTATCTGGTG+CGG 0.625717 3:-50035037 MsG0380014115.01.T01:CDS
CTTGAAGTCCTTCCAAGCAG+GGG 0.627348 3:+50032540 None:intergenic
TTTGAAGACGTTGAAAACCA+AGG 0.637372 3:-50039886 MsG0380014115.01.T01:intron
TTGAAGTCCTTCCAAGCAGG+GGG 0.639820 3:+50032541 None:intergenic
ACATGTGATACCATCGATGT+CGG 0.656731 3:-50032990 MsG0380014115.01.T01:CDS
TGCGGCCATGCAAATGATGT+GGG 0.663238 3:-50035019 MsG0380014115.01.T01:CDS
AGGACTTCAAGAATGCCCTT+AGG 0.666249 3:-50032528 MsG0380014115.01.T01:CDS
AAGAAGAACCACATATATGG+TGG 0.671892 3:-50037040 MsG0380014115.01.T01:CDS
AAATGATGTGGGACATCAAG+TGG 0.682623 3:-50035008 MsG0380014115.01.T01:CDS
TTTCCCACAAACCATGTATG+CGG 0.705823 3:+50036982 None:intergenic
TAATAACGGTAAGTCAGCAG+CGG 0.708348 3:-50032951 MsG0380014115.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAATCAAAAAAAG+AGG - Chr3:50036912-50036931 MsG0380014115.01.T01:CDS 10.0%
!! AAAAATAAATCAAAAAAAGA+GGG - Chr3:50036913-50036932 MsG0380014115.01.T01:CDS 10.0%
!! AAAATAATACAAATGAATTA+AGG + Chr3:50034181-50034200 None:intergenic 10.0%
!! ATTATATCATGTAAAATTAA+AGG + Chr3:50034734-50034753 None:intergenic 10.0%
!! TGCTAAATTATTTAAAAATA+AGG + Chr3:50034425-50034444 None:intergenic 10.0%
!!! ATAATTTTAGTAAAAGTAAA+AGG + Chr3:50035262-50035281 None:intergenic 10.0%
!!! ATTTTTTTTCGTAAATAAAT+TGG - Chr3:50032650-50032669 MsG0380014115.01.T01:CDS 10.0%
!!! CTTCTTTAATTTTTTTTTAA+TGG + Chr3:50036836-50036855 None:intergenic 10.0%
!!! TAATTTTAGTAAAAGTAAAA+GGG + Chr3:50035261-50035280 None:intergenic 10.0%
!!! TTTATTATCGTTTTTTATTT+TGG + Chr3:50032792-50032811 None:intergenic 10.0%
!! AATAGAGATTATTTATTAGA+TGG + Chr3:50037594-50037613 None:intergenic 15.0%
!! AATTACAAAACATTACATAA+TGG + Chr3:50032607-50032626 None:intergenic 15.0%
!! AGAGAAAGATATAAAAAAAT+AGG + Chr3:50036801-50036820 None:intergenic 15.0%
!! GACAAAAAAAATCAAAATTA+TGG + Chr3:50036639-50036658 None:intergenic 15.0%
!! TAAAAATCCAATAACAAAAA+TGG + Chr3:50038091-50038110 None:intergenic 15.0%
!! TATCTGATTATGTAAAAAAA+AGG - Chr3:50037455-50037474 MsG0380014115.01.T01:intron 15.0%
!! TGTGAATTTAATGATAAATA+AGG + Chr3:50033566-50033585 None:intergenic 15.0%
!!! AATTTTGATTTTTTTTGTCT+TGG - Chr3:50036640-50036659 MsG0380014115.01.T01:intron 15.0%
!!! ATAAATTGGTTTTTTCTAAA+AGG - Chr3:50032664-50032683 MsG0380014115.01.T01:CDS 15.0%
!!! ATATGACAATTTTGTAAAAT+AGG + Chr3:50036366-50036385 None:intergenic 15.0%
!!! ATTTTACATGATATAATTTG+TGG - Chr3:50034737-50034756 MsG0380014115.01.T01:intron 15.0%
!!! ATTTTTATGTTTTATCTATG+TGG - Chr3:50037646-50037665 MsG0380014115.01.T01:intron 15.0%
!!! CAACTATATCAATATATTTT+TGG - Chr3:50037525-50037544 MsG0380014115.01.T01:intron 15.0%
!!! GATTTTTCACTTAATTTATA+AGG + Chr3:50034985-50035004 None:intergenic 15.0%
!!! TAGTAACTTTTATATGTATT+TGG + Chr3:50036732-50036751 None:intergenic 15.0%
!!! TTTATAAATTTTGGTGTTAA+AGG - Chr3:50032456-50032475 MsG0380014115.01.T01:CDS 15.0%
!! AAGATATCAAACCTATAAAT+TGG - Chr3:50033050-50033069 MsG0380014115.01.T01:intron 20.0%
!! AAGTTGAGTAATCTTATAAA+AGG - Chr3:50034388-50034407 MsG0380014115.01.T01:intron 20.0%
!! ACAACTACTTTAATAGTTTA+TGG - Chr3:50033604-50033623 MsG0380014115.01.T01:intron 20.0%
!! AGAGCTTAATTTAAAAGTAA+AGG - Chr3:50037032-50037051 MsG0380014115.01.T01:CDS 20.0%
!! ATAACAAGAAAACAAATGTT+TGG - Chr3:50033158-50033177 MsG0380014115.01.T01:intron 20.0%
!! ATACAATAGTCAAATATTTC+AGG - Chr3:50032737-50032756 MsG0380014115.01.T01:intron 20.0%
!! ATATAAACACTTTACTAGTT+GGG + Chr3:50038256-50038275 None:intergenic 20.0%
!! ATCAAATTAAACTTACTAAC+CGG + Chr3:50035958-50035977 None:intergenic 20.0%
!! ATTACTCATAAATATTTGAG+TGG - Chr3:50032824-50032843 MsG0380014115.01.T01:intron 20.0%
!! GAATATTATACATTAAGCAT+TGG - Chr3:50036244-50036263 MsG0380014115.01.T01:intron 20.0%
!! GAGAATGAATTATACAAAAA+AGG + Chr3:50037815-50037834 None:intergenic 20.0%
!! GTAATGTCAACTTATAATAA+AGG + Chr3:50035287-50035306 None:intergenic 20.0%
!! TAACAATCCAATAACAAAAA+TGG + Chr3:50038046-50038065 None:intergenic 20.0%
!! TATATAAACACTTTACTAGT+TGG + Chr3:50038257-50038276 None:intergenic 20.0%
!! TATTATAGTGTTGTATTAGA+AGG - Chr3:50036332-50036351 MsG0380014115.01.T01:intron 20.0%
!! TTCATTTCTTCTTTATCAAA+GGG + Chr3:50035473-50035492 None:intergenic 20.0%
!! TTTATAGGTTTGATATCTTA+TGG + Chr3:50033049-50033068 None:intergenic 20.0%
!! TTTATTAGATGGATAAGTAA+AGG + Chr3:50037583-50037602 None:intergenic 20.0%
!! TTTCATTTCTTCTTTATCAA+AGG + Chr3:50035474-50035493 None:intergenic 20.0%
!!! AACTACATTTAAGTTTCATA+CGG - Chr3:50034040-50034059 MsG0380014115.01.T01:intron 20.0%
!!! AATTAATTTTGCAGACTTAA+GGG - Chr3:50035349-50035368 MsG0380014115.01.T01:CDS 20.0%
!!! ACTAGTAAAGTGTTTATATA+TGG - Chr3:50038257-50038276 MsG0380014115.01.T01:intron 20.0%
!!! ATGTTTGTAATTTTGTAAGT+TGG - Chr3:50033831-50033850 MsG0380014115.01.T01:intron 20.0%
!!! CTAGTAAAGTGTTTATATAT+GGG - Chr3:50038258-50038277 MsG0380014115.01.T01:intron 20.0%
!!! TAATTAATTTTGCAGACTTA+AGG - Chr3:50035348-50035367 MsG0380014115.01.T01:CDS 20.0%
!!! TCAAATTTTGAAATTGTATC+AGG + Chr3:50033354-50033373 None:intergenic 20.0%
!!! TGAAAACTTTGACATTTTTA+TGG - Chr3:50035178-50035197 MsG0380014115.01.T01:CDS 20.0%
!!! TTTTGCAACATTAAATCAAT+AGG + Chr3:50034842-50034861 None:intergenic 20.0%
! AAACATCAAAAGAAAAGGAA+TGG - Chr3:50033710-50033729 MsG0380014115.01.T01:intron 25.0%
! AAACATCAAAAGAAAAGGAA+TGG + Chr3:50033729-50033710 None:intergenic 25.0%
! AAATGTTTGTATTCACCAAA+TGG - Chr3:50034634-50034653 MsG0380014115.01.T01:intron 25.0%
! AAATTAATTTAATCCACCGA+GGG + Chr3:50033239-50033258 None:intergenic 25.0%
! AAATTATTCAATTTGCGACA+TGG - Chr3:50034084-50034103 MsG0380014115.01.T01:intron 25.0%
! AACACCAAGTGAAATATTTA+AGG - Chr3:50037740-50037759 MsG0380014115.01.T01:intron 25.0%
! AAGTGTTTATATATGGGTAA+GGG - Chr3:50038264-50038283 MsG0380014115.01.T01:intron 25.0%
! AATTAATTATACCCGAGATT+TGG + Chr3:50037837-50037856 None:intergenic 25.0%
! AATTATTCAATTTGCGACAT+GGG - Chr3:50034085-50034104 MsG0380014115.01.T01:intron 25.0%
! AATTCATTGAAAACTTACCT+TGG + Chr3:50032560-50032579 None:intergenic 25.0%
! AGCTAAAACATCAAAAGAAA+AGG + Chr3:50033479-50033498 None:intergenic 25.0%
! ATAATTCATTCTCCAAATCT+CGG - Chr3:50037822-50037841 MsG0380014115.01.T01:intron 25.0%
! ATAGTCAAATATTTCAGGAA+AGG - Chr3:50032742-50032761 MsG0380014115.01.T01:intron 25.0%
! CATAAAAGAAGTTTATGTGT+TGG + Chr3:50033379-50033398 None:intergenic 25.0%
! CATATTCTGTATATTTGTAG+AGG - Chr3:50036885-50036904 MsG0380014115.01.T01:intron 25.0%
! CTTATTACTTGTAGAAATGA+AGG - Chr3:50037071-50037090 MsG0380014115.01.T01:intron 25.0%
! GTAATTGTATAGTACATTGA+AGG - Chr3:50037672-50037691 MsG0380014115.01.T01:intron 25.0%
! GTCTAAGTAACTCTAAATAA+AGG - Chr3:50033324-50033343 MsG0380014115.01.T01:intron 25.0%
! GTTAATTCTAGTGAGAAAAT+TGG - Chr3:50038162-50038181 MsG0380014115.01.T01:intron 25.0%
! GTTTCTTAATTGGATATATC+CGG + Chr3:50038722-50038741 None:intergenic 25.0%
! TATAAACACTTTACTAGTTG+GGG + Chr3:50038255-50038274 None:intergenic 25.0%
! TATTACTGCTTAACTATGTT+AGG + Chr3:50033136-50033155 None:intergenic 25.0%
! TATTCATCAACATTGTGTAA+TGG + Chr3:50034534-50034553 None:intergenic 25.0%
! TCTAATTCATAAGACAACTA+AGG - Chr3:50039667-50039686 MsG0380014115.01.T01:intron 25.0%
! TGTAACATAAAATCTTAGCA+CGG + Chr3:50034608-50034627 None:intergenic 25.0%
! TTTAATGCTGTCCAATTTAT+AGG + Chr3:50033064-50033083 None:intergenic 25.0%
!! AAAAGATACGACATTTTTGA+CGG - Chr3:50036978-50036997 MsG0380014115.01.T01:CDS 25.0%
!! AAAGTGTTTATATATGGGTA+AGG - Chr3:50038263-50038282 MsG0380014115.01.T01:intron 25.0%
!! AACACGATTTGTTTCTTAAT+TGG + Chr3:50038732-50038751 None:intergenic 25.0%
!! AGAAAATTACTCTAGTTTGA+AGG - Chr3:50033796-50033815 MsG0380014115.01.T01:intron 25.0%
!! CAACACATAAACTTCTTTTA+TGG - Chr3:50033377-50033396 MsG0380014115.01.T01:intron 25.0%
!! CAATGTTGATGAATAAGAAA+AGG - Chr3:50034539-50034558 MsG0380014115.01.T01:intron 25.0%
!! CACTAAAACATCAAAAGTTT+TGG - Chr3:50033669-50033688 MsG0380014115.01.T01:intron 25.0%
!! GAGAAAATTTATCCTTCTTT+TGG - Chr3:50037962-50037981 MsG0380014115.01.T01:intron 25.0%
!! TGGATTAAGTCTAAAGTTAA+TGG + Chr3:50032884-50032903 None:intergenic 25.0%
!! TTATGTTTTATCTATGTGGA+TGG - Chr3:50037650-50037669 MsG0380014115.01.T01:intron 25.0%
!!! AATTTTCTCCTTGTTTGTTT+TGG + Chr3:50033784-50033803 None:intergenic 25.0%
!!! ATAGTTCATACTATTTCTGT+TGG - Chr3:50038132-50038151 MsG0380014115.01.T01:intron 25.0%
!!! ATTTTTTTTGTCTTGGTAAC+AGG - Chr3:50036647-50036666 MsG0380014115.01.T01:intron 25.0%
!!! CGTCTTAAAATTGTTGTTTT+TGG + Chr3:50039253-50039272 None:intergenic 25.0%
!!! CGTTTTTTATTTTGGTTTGA+TGG + Chr3:50032784-50032803 None:intergenic 25.0%
!!! CTCTAAAACATCAAAAGAAA+AGG - Chr3:50033705-50033724 MsG0380014115.01.T01:intron 25.0%
!!! GTTTTTTCTAACTACGAAAA+AGG - Chr3:50039388-50039407 MsG0380014115.01.T01:intron 25.0%
!!! TTGATTTCGATTTTAGCAAA+TGG - Chr3:50033935-50033954 MsG0380014115.01.T01:intron 25.0%
!!! TTTTGCTCCATTTTTGTTAT+TGG - Chr3:50038036-50038055 MsG0380014115.01.T01:intron 25.0%
AAAACATTACATAATGGCCA+TGG + Chr3:50032601-50032620 None:intergenic 30.0%
AAAATTATATATCCCAAGCC+CGG + Chr3:50038486-50038505 None:intergenic 30.0%
AAACAAATCGTGTTTGCTTA+AGG - Chr3:50038738-50038757 MsG0380014115.01.T01:intron 30.0%
AAACATTACATAATGGCCAT+GGG + Chr3:50032600-50032619 None:intergenic 30.0%
AAATCAAAAAAAGAGGGAGA+AGG - Chr3:50036919-50036938 MsG0380014115.01.T01:CDS 30.0%
AAATCGAAATCAAAGCTAGT+TGG + Chr3:50033928-50033947 None:intergenic 30.0%
AAATGCTAACAAATGTCTTC+AGG + Chr3:50036777-50036796 None:intergenic 30.0%
AACAAAAAAACGAGTGACTT+GGG + Chr3:50038831-50038850 None:intergenic 30.0%
AACAACGAAATTACTGTATC+TGG - Chr3:50039293-50039312 MsG0380014115.01.T01:intron 30.0%
AAGTATGAGATTCCAAAAGA+AGG + Chr3:50037977-50037996 None:intergenic 30.0%
AATATACCGAACGAAATTAC+TGG + Chr3:50039222-50039241 None:intergenic 30.0%
AATGCTAACAAATGTCTTCA+GGG + Chr3:50036776-50036795 None:intergenic 30.0%
AATTAATTTAATCCACCGAG+GGG + Chr3:50033238-50033257 None:intergenic 30.0%
ACCAAGTGAAATATTTAAGG+AGG - Chr3:50037743-50037762 MsG0380014115.01.T01:intron 30.0%
ACTAACCACAAAACTCTATA+TGG + Chr3:50033880-50033899 None:intergenic 30.0%
AGAAACTCATTAACACAAGT+CGG + Chr3:50038948-50038967 None:intergenic 30.0%
AGATACAGTAATTTCGTTGT+TGG + Chr3:50039294-50039313 None:intergenic 30.0%
AGTGTTTATATATGGGTAAG+GGG - Chr3:50038265-50038284 MsG0380014115.01.T01:intron 30.0%
ATAAGACAACTAAGGATGTT+TGG - Chr3:50039675-50039694 MsG0380014115.01.T01:intron 30.0%
ATATACCGAACGAAATTACT+GGG + Chr3:50039221-50039240 None:intergenic 30.0%
ATCAAAAGAAAAGGAATGGA+GGG - Chr3:50033714-50033733 MsG0380014115.01.T01:intron 30.0%
ATCAAAAGAAAAGGAATGGA+GGG + Chr3:50033733-50033714 None:intergenic 30.0%
ATCAAGTGGTATAAGGTATA+AGG - Chr3:50037432-50037451 MsG0380014115.01.T01:intron 30.0%
ATTAAAGTAGTTGTGACCTT+TGG + Chr3:50033598-50033617 None:intergenic 30.0%
ATTCACATGTGATAAACCAA+AGG - Chr3:50033579-50033598 MsG0380014115.01.T01:intron 30.0%
CAAATTAATTTAATCCACCG+AGG + Chr3:50033240-50033259 None:intergenic 30.0%
CATCACTCATTCACAAAATT+GGG + Chr3:50038317-50038336 None:intergenic 30.0%
CCAATATATATTGCAGAGAA+AGG - Chr3:50034486-50034505 MsG0380014115.01.T01:intron 30.0%
CCTTTCTCTGCAATATATAT+TGG + Chr3:50034489-50034508 None:intergenic 30.0%
CTATGTTAGGATGTTCTATT+TGG + Chr3:50033123-50033142 None:intergenic 30.0%
GAATTACAAGCAAAGAAAAG+TGG - Chr3:50037093-50037112 MsG0380014115.01.T01:intron 30.0%
GAGAATTACACCTCAAAATA+TGG + Chr3:50039055-50039074 None:intergenic 30.0%
GATAAGTAAAGGTTAAATGC+TGG + Chr3:50037572-50037591 None:intergenic 30.0%
GTCTAACATGCAATTAAGAA+TGG + Chr3:50035597-50035616 None:intergenic 30.0%
GTTAAGAAGAACCACATATA+TGG - Chr3:50035383-50035402 MsG0380014115.01.T01:CDS 30.0%
GTTGCTTAAACAATGTCATT+AGG + Chr3:50036676-50036695 None:intergenic 30.0%
GTTTGTAGAATAAAGTGCAT+TGG - Chr3:50035151-50035170 MsG0380014115.01.T01:CDS 30.0%
TAACAAAAAAACGAGTGACT+TGG + Chr3:50038832-50038851 None:intergenic 30.0%
TAACATGTCATTACTTGAGT+AGG + Chr3:50038006-50038025 None:intergenic 30.0%
TAACTATGAATTAGCATGAC+CGG - Chr3:50035936-50035955 MsG0380014115.01.T01:intron 30.0%
TAAGACAACTAAGGATGTTT+GGG - Chr3:50039676-50039695 MsG0380014115.01.T01:intron 30.0%
TAATTCATTCTCCAAATCTC+GGG - Chr3:50037823-50037842 MsG0380014115.01.T01:intron 30.0%
TCAAAATGTAATTCTTGCAC+AGG + Chr3:50039616-50039635 None:intergenic 30.0%
TCCTCCTTAAATATTTCACT+TGG + Chr3:50037747-50037766 None:intergenic 30.0%
TCTAGCATATCATCATTGTA+TGG + Chr3:50033208-50033227 None:intergenic 30.0%
TCTCTGCAATATATATTGGT+AGG + Chr3:50034485-50034504 None:intergenic 30.0%
TGACTTAAAAATGTCCACAT+TGG - Chr3:50038222-50038241 MsG0380014115.01.T01:intron 30.0%
TGTTCTATTTGGTTAGGTAT+CGG + Chr3:50033112-50033131 None:intergenic 30.0%
TTACTACCGTGAAACTTAAA+CGG + Chr3:50039341-50039360 None:intergenic 30.0%
TTAGGATGTTCTATTTGGTT+AGG + Chr3:50033118-50033137 None:intergenic 30.0%
! AACAAACCGTTTAAGTTTCA+CGG - Chr3:50039332-50039351 MsG0380014115.01.T01:intron 30.0%
! AACGATTGAACCATATTTTG+AGG - Chr3:50039042-50039061 MsG0380014115.01.T01:intron 30.0%
! AATTACTCTAGTTTGAAGGT+AGG - Chr3:50033800-50033819 MsG0380014115.01.T01:intron 30.0%
! GACTGACACTATTTTACTTT+GGG - Chr3:50035066-50035085 MsG0380014115.01.T01:CDS 30.0%
! GTAGTCCTTAAGAAGATTTT+CGG - Chr3:50033957-50033976 MsG0380014115.01.T01:intron 30.0%
! TACAATTTTACTCCTAGATC+AGG + Chr3:50036166-50036185 None:intergenic 30.0%
! TAGTCCTTAAGAAGATTTTC+GGG - Chr3:50033958-50033977 MsG0380014115.01.T01:intron 30.0%
! TCATGTGGTTTTCGATTATA+AGG + Chr3:50032957-50032976 None:intergenic 30.0%
! TGAAAACACCATTTTACACA+TGG - Chr3:50037338-50037357 MsG0380014115.01.T01:intron 30.0%
! TGACTGACACTATTTTACTT+TGG - Chr3:50035065-50035084 MsG0380014115.01.T01:CDS 30.0%
! TTACATTTTGAACTGTCTTG+TGG - Chr3:50039625-50039644 MsG0380014115.01.T01:intron 30.0%
! TTTATGGTGTTTTCCAACAA+GGG - Chr3:50033620-50033639 MsG0380014115.01.T01:intron 30.0%
! TTTCACATTTTCAGCATGTT+CGG + Chr3:50039552-50039571 None:intergenic 30.0%
!! ACAAAATTGATTTGATCTCG+AGG - Chr3:50036302-50036321 MsG0380014115.01.T01:intron 30.0%
!! ATATAGAGTTTTGTGGTTAG+TGG - Chr3:50033879-50033898 MsG0380014115.01.T01:intron 30.0%
!! CAAAAAAAGTGTCATAGGTA+AGG + Chr3:50035909-50035928 None:intergenic 30.0%
!! CTTCTCTCCATTTTTGTTAT+TGG - Chr3:50038081-50038100 MsG0380014115.01.T01:intron 30.0%
!!! TCTTTTGATGTTTTAGCTCT+TGG - Chr3:50033481-50033500 MsG0380014115.01.T01:intron 30.0%
AAAGCAATATGAAACTGCTC+AGG + Chr3:50039849-50039868 None:intergenic 35.0%
AAATGTGAAACAGGCTGAAA+AGG - Chr3:50039562-50039581 MsG0380014115.01.T01:intron 35.0%
AAGAAGAACCACATATATGG+TGG - Chr3:50035386-50035405 MsG0380014115.01.T01:CDS 35.0%
AATAGTGCAACCATGTCAAA+GGG - Chr3:50032914-50032933 MsG0380014115.01.T01:CDS 35.0%
AATTCCTTATACCGCATACA+TGG - Chr3:50035433-50035452 MsG0380014115.01.T01:CDS 35.0%
ACAAAAAAACGAGTGACTTG+GGG + Chr3:50038830-50038849 None:intergenic 35.0%
ACATGCTGAAAATGTGAAAC+AGG - Chr3:50039553-50039572 MsG0380014115.01.T01:intron 35.0%
ACTATGAAAGAACTAGTGTG+TGG - Chr3:50038194-50038213 MsG0380014115.01.T01:intron 35.0%
AGAGAGTTTCCACTGTTATT+TGG - Chr3:50037886-50037905 MsG0380014115.01.T01:intron 35.0%
ATACGGAATTGCGACAAATT+AGG - Chr3:50034057-50034076 MsG0380014115.01.T01:intron 35.0%
ATACTGAACCAAATGTGGTT+TGG + Chr3:50036108-50036127 None:intergenic 35.0%
ATATGCAGCCATGTGTAAAA+TGG + Chr3:50037349-50037368 None:intergenic 35.0%
ATCTCCCTTGAGTAACATAA+TGG + Chr3:50034767-50034786 None:intergenic 35.0%
ATGAACATAGCTCGATTGAT+AGG + Chr3:50035044-50035063 None:intergenic 35.0%
CAAACCCGAAAATCTTCTTA+AGG + Chr3:50033965-50033984 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG - Chr3:50033713-50033732 MsG0380014115.01.T01:intron 35.0%
CATCAAAAGAAAAGGAATGG+AGG + Chr3:50033732-50033713 None:intergenic 35.0%
CATGTTGTCATGTAGTCTAT+TGG - Chr3:50034948-50034967 MsG0380014115.01.T01:intron 35.0%
CCTACCATTATGTTACTCAA+GGG - Chr3:50034760-50034779 MsG0380014115.01.T01:intron 35.0%
CCTATGGAAACGACTAATAA+CGG - Chr3:50039461-50039480 MsG0380014115.01.T01:intron 35.0%
CGTCTTTCATCTTATAGTTC+AGG + Chr3:50039752-50039771 None:intergenic 35.0%
CTATGAAAGAACTAGTGTGT+GGG - Chr3:50038195-50038214 MsG0380014115.01.T01:intron 35.0%
CTCATGAGATCTTTGTTGAA+GGG - Chr3:50039814-50039833 MsG0380014115.01.T01:intron 35.0%
CTGAAAAGGATATAATCCTC+TGG - Chr3:50039576-50039595 MsG0380014115.01.T01:intron 35.0%
CTTCTATGATTGAAATGCTC+TGG + Chr3:50037705-50037724 None:intergenic 35.0%
CTTGATGTCTGCAAAAAACT+TGG + Chr3:50035504-50035523 None:intergenic 35.0%
GAACCTCGTGATAAAATAGA+GGG - Chr3:50036222-50036241 MsG0380014115.01.T01:intron 35.0%
GCATCACTCATTCACAAAAT+TGG + Chr3:50038318-50038337 None:intergenic 35.0%
TACGGAATTGCGACAAATTA+GGG - Chr3:50034058-50034077 MsG0380014115.01.T01:intron 35.0%
TAGTATCCACGTGATCAATT+TGG + Chr3:50032991-50033010 None:intergenic 35.0%
TATACTCGTAACAGTGATCT+CGG - Chr3:50039098-50039117 MsG0380014115.01.T01:intron 35.0%
TATGTTATCCTTCAAGACGT+GGG + Chr3:50039417-50039436 None:intergenic 35.0%
TATTTGCTTGCAGCAAAACA+TGG - Chr3:50037132-50037151 MsG0380014115.01.T01:intron 35.0%
TCATCTTATAGTTCAGGTAC+CGG + Chr3:50039746-50039765 None:intergenic 35.0%
TGAACCTCGTGATAAAATAG+AGG - Chr3:50036221-50036240 MsG0380014115.01.T01:intron 35.0%
TTACGAACTCTGCCTATAAA+AGG - Chr3:50038849-50038868 MsG0380014115.01.T01:intron 35.0%
TTCAAGCACACTCATCATTT+CGG + Chr3:50037163-50037182 None:intergenic 35.0%
TTCCATCAGCAAGAAAAAGA+TGG - Chr3:50034667-50034686 MsG0380014115.01.T01:intron 35.0%
TTCTACTACAAATGCTGAGT+TGG - Chr3:50039514-50039533 MsG0380014115.01.T01:intron 35.0%
TTGCACTATTGGTATTGTCA+TGG + Chr3:50032904-50032923 None:intergenic 35.0%
TTTCTCAAGTTTACCCTTGT+TGG + Chr3:50033636-50033655 None:intergenic 35.0%
TTTGAAGACGTTGAAAACCA+AGG - Chr3:50032540-50032559 MsG0380014115.01.T01:CDS 35.0%
TTTGCATCCAAAACTTTGAC+AGG + Chr3:50032486-50032505 None:intergenic 35.0%
! AAACCACATTTGGTTCAGTA+TGG - Chr3:50036107-50036126 MsG0380014115.01.T01:intron 35.0%
! AACCACATTTGGTTCAGTAT+GGG - Chr3:50036108-50036127 MsG0380014115.01.T01:intron 35.0%
! AAGTGGCGTAGTTGAAATTT+TGG - Chr3:50037008-50037027 MsG0380014115.01.T01:CDS 35.0%
! ACAACTTTGTTTCCTGATCT+AGG - Chr3:50036151-50036170 MsG0380014115.01.T01:intron 35.0%
! AGAATGCTTAAAGAGTGCAA+CGG - Chr3:50035217-50035236 MsG0380014115.01.T01:CDS 35.0%
! AGGTATTCCTGTCAAAGTTT+TGG - Chr3:50032476-50032495 MsG0380014115.01.T01:CDS 35.0%
! ATGATGATGCAGATGATGTT+TGG + Chr3:50033434-50033453 None:intergenic 35.0%
! ATGTGCCATATAGAGTTTTG+TGG - Chr3:50033872-50033891 MsG0380014115.01.T01:intron 35.0%
! ATTCCCTCTATTTTATCACG+AGG + Chr3:50036228-50036247 None:intergenic 35.0%
! CATGTTCAGTGTTAGTTTCA+TGG + Chr3:50037206-50037225 None:intergenic 35.0%
! GTTGATGAATAAGAAAAGGC+AGG - Chr3:50034543-50034562 MsG0380014115.01.T01:intron 35.0%
! GTTTATGGTGTTTTCCAACA+AGG - Chr3:50033619-50033638 MsG0380014115.01.T01:intron 35.0%
! TGTTCTTACTAGCTTCCATT+TGG + Chr3:50035529-50035548 None:intergenic 35.0%
! TTGGAGAAGGATGAGATTTT+GGG - Chr3:50033982-50034001 MsG0380014115.01.T01:intron 35.0%
! TTTGGAGAAGGATGAGATTT+TGG - Chr3:50033981-50034000 MsG0380014115.01.T01:intron 35.0%
! TTTTTGACGGTAGCAAAAAG+TGG - Chr3:50036991-50037010 MsG0380014115.01.T01:CDS 35.0%
!! ATTTGGTGTGAAGAATGAGT+GGG + Chr3:50038884-50038903 None:intergenic 35.0%
!! CCTCTCAAAAAAAGTGTCAT+AGG + Chr3:50035914-50035933 None:intergenic 35.0%
!! TAAAGAAATTTGCTGTGAGC+CGG - Chr3:50039724-50039743 MsG0380014115.01.T01:intron 35.0%
!! TTCTAGACTTAAGCTCTGAA+AGG + Chr3:50037307-50037326 None:intergenic 35.0%
!!! CCTATGACACTTTTTTTGAG+AGG - Chr3:50035911-50035930 MsG0380014115.01.T01:intron 35.0%
!!! CTTAAGAAGATTTTCGGGTT+TGG - Chr3:50033963-50033982 MsG0380014115.01.T01:intron 35.0%
!!! TTTCTCCTTGTTTGTTTTGG+AGG + Chr3:50033781-50033800 None:intergenic 35.0%
AAATGATGTGGGACATCAAG+TGG - Chr3:50037418-50037437 MsG0380014115.01.T01:intron 40.0%
AACTCATTAACACAAGTCGG+AGG + Chr3:50038945-50038964 None:intergenic 40.0%
ACATGTGATACCATCGATGT+CGG - Chr3:50039436-50039455 MsG0380014115.01.T01:intron 40.0%
ACTCACCCAGTAATTTCGTT+CGG - Chr3:50039213-50039232 MsG0380014115.01.T01:intron 40.0%
ACTCATTAACACAAGTCGGA+GGG + Chr3:50038944-50038963 None:intergenic 40.0%
ACTCTTATGATACCTACCCA+TGG - Chr3:50032581-50032600 MsG0380014115.01.T01:CDS 40.0%
AGAGTTGACCACCATATATG+TGG + Chr3:50035397-50035416 None:intergenic 40.0%
ATCATGTTCACCCTTTGACA+TGG + Chr3:50032927-50032946 None:intergenic 40.0%
ATCTGTCGAAGAACAATCTC+AGG - Chr3:50039776-50039795 MsG0380014115.01.T01:intron 40.0%
ATGGCATACTCAGTCACTAT+TGG - Chr3:50034686-50034705 MsG0380014115.01.T01:intron 40.0%
ATTACATAATGGCCATGGGT+AGG + Chr3:50032596-50032615 None:intergenic 40.0%
CAAACCATGTATGCGGTATA+AGG + Chr3:50035440-50035459 None:intergenic 40.0%
CAAGCAATGATATTTCGACG+TGG - Chr3:50034453-50034472 MsG0380014115.01.T01:intron 40.0%
CAATAGTGCAACCATGTCAA+AGG - Chr3:50032913-50032932 MsG0380014115.01.T01:CDS 40.0%
CACTCTAGTCCAAATAACAG+TGG + Chr3:50037898-50037917 None:intergenic 40.0%
CCCTTGAGTAACATAATGGT+AGG + Chr3:50034763-50034782 None:intergenic 40.0%
CCGTTATTAGTCGTTTCCAT+AGG + Chr3:50039464-50039483 None:intergenic 40.0%
CTCTACCTCCAAAACAAACA+AGG - Chr3:50033773-50033792 MsG0380014115.01.T01:intron 40.0%
CTTTGACATGGTTGCACTAT+TGG + Chr3:50032915-50032934 None:intergenic 40.0%
GCCTACCATTATGTTACTCA+AGG - Chr3:50034759-50034778 MsG0380014115.01.T01:intron 40.0%
GCTCATGAGATCTTTGTTGA+AGG - Chr3:50039813-50039832 MsG0380014115.01.T01:intron 40.0%
GGGAGAAGGAAATCAAGAAA+TGG - Chr3:50036933-50036952 MsG0380014115.01.T01:CDS 40.0%
GGTTGTATGTTGACAGATGA+TGG + Chr3:50033091-50033110 None:intergenic 40.0%
GTATGTTATCCTTCAAGACG+TGG + Chr3:50039418-50039437 None:intergenic 40.0%
TAATAACGGTAAGTCAGCAG+CGG - Chr3:50039475-50039494 MsG0380014115.01.T01:intron 40.0%
TATACCGCATACATGGTTTG+TGG - Chr3:50035440-50035459 MsG0380014115.01.T01:CDS 40.0%
TATCCACGTGATCAATTTGG+AGG + Chr3:50032988-50033007 None:intergenic 40.0%
TCAGAGCTTAAGTCTAGAAG+TGG - Chr3:50037308-50037327 MsG0380014115.01.T01:intron 40.0%
TCGACTTCGTATTGAAGAAG+AGG - Chr3:50039959-50039978 MsG0380014115.01.T01:CDS 40.0%
TGGAAACATGAGATGCCATT+TGG + Chr3:50034652-50034671 None:intergenic 40.0%
TGGATATATCCGGAAGTTTC+TGG + Chr3:50038712-50038731 None:intergenic 40.0%
TGGCATACTCAGTCACTATT+GGG - Chr3:50034687-50034706 MsG0380014115.01.T01:intron 40.0%
TTAGTCTACCTTGCACAACT+CGG - Chr3:50039149-50039168 MsG0380014115.01.T01:intron 40.0%
TTGATCAAAGCCACTCGATA+CGG + Chr3:50039023-50039042 None:intergenic 40.0%
TTTCCCACAAACCATGTATG+CGG + Chr3:50035447-50035466 None:intergenic 40.0%
! AAAAGGAATGGAGGGAGTAT+TGG - Chr3:50033722-50033741 MsG0380014115.01.T01:intron 40.0%
! AATGCTTAAAGAGTGCAACG+GGG - Chr3:50035219-50035238 MsG0380014115.01.T01:CDS 40.0%
! ATACCGCATACATGGTTTGT+GGG - Chr3:50035441-50035460 MsG0380014115.01.T01:CDS 40.0%
! CTACAAATGCTGAGTTGGAA+AGG - Chr3:50039519-50039538 MsG0380014115.01.T01:intron 40.0%
! GAAGCATCAACTGTGAGATT+TGG + Chr3:50038901-50038920 None:intergenic 40.0%
! GAATGCTTAAAGAGTGCAAC+GGG - Chr3:50035218-50035237 MsG0380014115.01.T01:CDS 40.0%
! TAGTTGTGTATTGACACGTG+TGG + Chr3:50035619-50035638 None:intergenic 40.0%
! TGAACCAAATGTGGTTTGGA+TGG + Chr3:50036104-50036123 None:intergenic 40.0%
! TGCCATCTTTTTCTTGCTGA+TGG + Chr3:50034672-50034691 None:intergenic 40.0%
! TGGAGAAGGATGAGATTTTG+GGG - Chr3:50033983-50034002 MsG0380014115.01.T01:intron 40.0%
! TTTGGTGTGAAGAATGAGTG+GGG + Chr3:50038883-50038902 None:intergenic 40.0%
!! AAGTTTCTGGATACGCGTTT+TGG + Chr3:50038699-50038718 None:intergenic 40.0%
!! AGAGTTTTGTGGTTAGTGGT+TGG - Chr3:50033883-50033902 MsG0380014115.01.T01:intron 40.0%
!! GAAAACTCTTGGAAGGTATC+TGG - Chr3:50037384-50037403 MsG0380014115.01.T01:intron 40.0%
!! GAGTTTTGTGGTTAGTGGTT+GGG - Chr3:50033884-50033903 MsG0380014115.01.T01:intron 40.0%
!! GATTTGGTGTGAAGAATGAG+TGG + Chr3:50038885-50038904 None:intergenic 40.0%
!! GCTTTCTTTAAGACGTTTCG+CGG + Chr3:50039181-50039200 None:intergenic 40.0%
!! GTAAAGGCATCTGACAAGAA+AGG - Chr3:50037048-50037067 MsG0380014115.01.T01:CDS 40.0%
!! GTTTGATGGTGTTGTTGCTT+CGG + Chr3:50032770-50032789 None:intergenic 40.0%
!! TGATCTCGGCTGTTTTATCT+TGG - Chr3:50039112-50039131 MsG0380014115.01.T01:intron 40.0%
!! TTAGTGGTTGGGTTGAATGA+AGG - Chr3:50033895-50033914 MsG0380014115.01.T01:intron 40.0%
!!! AAGATTTTCGGGTTTGGAGA+AGG - Chr3:50033969-50033988 MsG0380014115.01.T01:intron 40.0%
AACGCGTATCCAGAAACTTC+CGG - Chr3:50038700-50038719 MsG0380014115.01.T01:intron 45.0%
ACGGTAGTAACTTCAAGCGT+TGG - Chr3:50039351-50039370 MsG0380014115.01.T01:intron 45.0%
ACGTCTTAAAGAAAGCGACC+TGG - Chr3:50039185-50039204 MsG0380014115.01.T01:intron 45.0%
ACTCCTTAGTCTCATGCCTA+AGG + Chr3:50039917-50039936 None:intergenic 45.0%
AGCCCATACTGAACCAAATG+TGG + Chr3:50036113-50036132 None:intergenic 45.0%
AGGACTTCAAGAATGCCCTT+AGG - Chr3:50039898-50039917 MsG0380014115.01.T01:CDS 45.0%
ATGCCTCCAAATTGATCACG+TGG - Chr3:50032982-50033001 MsG0380014115.01.T01:CDS 45.0%
ATGCTAGATTGTGTACCCCT+CGG - Chr3:50033220-50033239 MsG0380014115.01.T01:intron 45.0%
CCTTTCGGTTTCGAATAGAG+CGG - Chr3:50038990-50039009 MsG0380014115.01.T01:intron 45.0%
CGACAACGAAAACTCTTGGA+AGG - Chr3:50037377-50037396 MsG0380014115.01.T01:intron 45.0%
CGCTCTATTCGAAACCGAAA+GGG + Chr3:50038992-50039011 None:intergenic 45.0%
CTACTCCTTTCTGTCCCTTT+CGG - Chr3:50038975-50038994 MsG0380014115.01.T01:intron 45.0%
CTCCTTAGTCTCATGCCTAA+GGG + Chr3:50039916-50039935 None:intergenic 45.0%
GATAGGACGTTGCACTATGT+AGG + Chr3:50035027-50035046 None:intergenic 45.0%
GATGTCCCACATCATTTGCA+TGG + Chr3:50037415-50037434 None:intergenic 45.0%
GCGTAAAACGCGTTTGCTTA+AGG - Chr3:50038788-50038807 MsG0380014115.01.T01:intron 45.0%
GGTAATCATTCTCTTGCCAG+AGG + Chr3:50039595-50039614 None:intergenic 45.0%
GTGGGACATCAAGTGGTATA+AGG - Chr3:50037425-50037444 MsG0380014115.01.T01:intron 45.0%
TAGTCTACCTTGCACAACTC+GGG - Chr3:50039150-50039169 MsG0380014115.01.T01:intron 45.0%
TCCTCCATCCAAACCACATT+TGG - Chr3:50036097-50036116 MsG0380014115.01.T01:intron 45.0%
TCTTGAAGTCCTTCCAAGCA+GGG + Chr3:50039890-50039909 None:intergenic 45.0%
TTCTTGAAGTCCTTCCAAGC+AGG + Chr3:50039891-50039910 None:intergenic 45.0%
TTGATAAACTACCCCCTGCT+TGG - Chr3:50039874-50039893 MsG0380014115.01.T01:intron 45.0%
TTTGGAGGTAGAGCTTGTGA+AGG + Chr3:50033766-50033785 None:intergenic 45.0%
! AAATGTGGTTTGGATGGAGG+AGG + Chr3:50036098-50036117 None:intergenic 45.0%
! ACCAAATGTGGTTTGGATGG+AGG + Chr3:50036101-50036120 None:intergenic 45.0%
! AGAGCTTGTGAAGGAGTGTA+TGG + Chr3:50033757-50033776 None:intergenic 45.0%
! ATGCTTAAAGAGTGCAACGG+GGG - Chr3:50035220-50035239 MsG0380014115.01.T01:CDS 45.0%
! CACAGTTGATGCTTCCTATG+CGG - Chr3:50038906-50038925 MsG0380014115.01.T01:intron 45.0%
! GAGTTTTCGTTGTCGATGCT+TGG + Chr3:50037372-50037391 None:intergenic 45.0%
! GCATCGACAACGAAAACTCT+TGG - Chr3:50037373-50037392 MsG0380014115.01.T01:intron 45.0%
! GTTTTATCTTGGAGACGACG+TGG - Chr3:50039123-50039142 MsG0380014115.01.T01:intron 45.0%
! TAATTTTTGCGTCCGTCCGA+CGG - Chr3:50038459-50038478 MsG0380014115.01.T01:intron 45.0%
!! GACATGGGTGTTCTAAGAGA+TGG - Chr3:50034100-50034119 MsG0380014115.01.T01:intron 45.0%
!! TCTGGATACGCGTTTTGGAT+CGG + Chr3:50038694-50038713 None:intergenic 45.0%
!! TGGTTCAGTATGGGCTAGTT+GGG - Chr3:50036117-50036136 MsG0380014115.01.T01:intron 45.0%
!! TTGGAGGCATCGTAATCATG+TGG + Chr3:50032972-50032991 None:intergenic 45.0%
!! TTGGTTCAGTATGGGCTAGT+TGG - Chr3:50036116-50036135 MsG0380014115.01.T01:intron 45.0%
!! AATGATTAATAATTTAAATT+TGG + Chr3:50036455-50036474 None:intergenic 5.0%
!!! ATATTTTTTACTAATATATA+AGG + Chr3:50035786-50035805 None:intergenic 5.0%
!!! TTAAATTAATTTGAATTATA+AGG - Chr3:50033247-50033266 MsG0380014115.01.T01:intron 5.0%
!!! TTTTTTTTTTTTTTGAATAA+AGG - Chr3:50036015-50036034 MsG0380014115.01.T01:intron 5.0%
AAAGGTTGCCCACGTCTTGA+AGG - Chr3:50039406-50039425 MsG0380014115.01.T01:intron 50.0%
ACGCAACCGCAAGTTGTTGA+GGG - Chr3:50037255-50037274 MsG0380014115.01.T01:intron 50.0%
AGGAGCTGAGGTTTGAACTG+TGG + Chr3:50035007-50035026 None:intergenic 50.0%
AGTCCTTAACCAGTGCTCTG+AGG + Chr3:50035108-50035127 None:intergenic 50.0%
CACAAAATTGGGTGCCCCAA+GGG + Chr3:50038306-50038325 None:intergenic 50.0%
CACAACCCCTCAACAACTTG+CGG + Chr3:50037264-50037283 None:intergenic 50.0%
CCGCTCTATTCGAAACCGAA+AGG + Chr3:50038993-50039012 None:intergenic 50.0%
CGAAACCGAAAGGGACAGAA+AGG + Chr3:50038983-50039002 None:intergenic 50.0%
CTTGAAGTCCTTCCAAGCAG+GGG + Chr3:50039889-50039908 None:intergenic 50.0%
GCAAGTTGTTGAGGGGTTGT+GGG - Chr3:50037263-50037282 MsG0380014115.01.T01:intron 50.0%
GGAGAAGAGAGATACCGCAT+AGG + Chr3:50038923-50038942 None:intergenic 50.0%
GTCCTTAACCAGTGCTCTGA+GGG + Chr3:50035107-50035126 None:intergenic 50.0%
GTTGCACTATGTAGGAGCTG+AGG + Chr3:50035019-50035038 None:intergenic 50.0%
GTTGTGGGAGAGGCTTTCTA+TGG - Chr3:50037278-50037297 MsG0380014115.01.T01:intron 50.0%
TAAACTACCCCCTGCTTGGA+AGG - Chr3:50039878-50039897 MsG0380014115.01.T01:intron 50.0%
TACGCAACCGCAAGTTGTTG+AGG - Chr3:50037254-50037273 MsG0380014115.01.T01:intron 50.0%
TCACAAAATTGGGTGCCCCA+AGG + Chr3:50038307-50038326 None:intergenic 50.0%
TCCATAGGAACCGACATCGA+TGG + Chr3:50039449-50039468 None:intergenic 50.0%
TGCAGACATCAAGCGCCAAA+TGG - Chr3:50035511-50035530 MsG0380014115.01.T01:CDS 50.0%
TGCCCTTAGGCATGAGACTA+AGG - Chr3:50039911-50039930 MsG0380014115.01.T01:CDS 50.0%
TGCGGCCATGCAAATGATGT+GGG - Chr3:50037407-50037426 MsG0380014115.01.T01:intron 50.0%
TTGAAGTCCTTCCAAGCAGG+GGG + Chr3:50039888-50039907 None:intergenic 50.0%
TTTGATCCACGATCCAAGCC+CGG + Chr3:50038424-50038443 None:intergenic 50.0%
! AACGCGTTTTACGCGTGACT+TGG + Chr3:50038782-50038801 None:intergenic 50.0%
! AATTTTTGCGTCCGTCCGAC+GGG - Chr3:50038460-50038479 MsG0380014115.01.T01:intron 50.0%
! ACGCGTTTTACGCGTGACTT+GGG + Chr3:50038781-50038800 None:intergenic 50.0%
! GGGGCAAGCTCTCCTTTTAT+AGG + Chr3:50038864-50038883 None:intergenic 50.0%
!! ACCATCGATGTCGGTTCCTA+TGG - Chr3:50039445-50039464 MsG0380014115.01.T01:intron 50.0%
!! ATACGCGTTTTGGATCGGGT+CGG + Chr3:50038689-50038708 None:intergenic 50.0%
!! CTCTTGGAAGGTATCTGGTG+CGG - Chr3:50037389-50037408 MsG0380014115.01.T01:intron 50.0%
!! CTGGATACGCGTTTTGGATC+GGG + Chr3:50038693-50038712 None:intergenic 50.0%
!! TATGGGCTAGTTGGGTCAAG+TGG - Chr3:50036125-50036144 MsG0380014115.01.T01:intron 50.0%
ATGGGTAAGGGGACCTCCAA+GGG - Chr3:50038276-50038295 MsG0380014115.01.T01:intron 55.0%
CGCAACCGCAAGTTGTTGAG+GGG - Chr3:50037256-50037275 MsG0380014115.01.T01:intron 55.0%
CGCAAGTTGTTGAGGGGTTG+TGG - Chr3:50037262-50037281 MsG0380014115.01.T01:intron 55.0%
CGGTTACGTACCGTATCGAG+TGG - Chr3:50039010-50039029 MsG0380014115.01.T01:intron 55.0%
CTAGATTGTGTACCCCTCGG+TGG - Chr3:50033223-50033242 MsG0380014115.01.T01:intron 55.0%
GTGCGGCCATGCAAATGATG+TGG - Chr3:50037406-50037425 MsG0380014115.01.T01:intron 55.0%
GTTGGGGTGACTCTCCAATG+TGG + Chr3:50038239-50038258 None:intergenic 55.0%
TATGGGTAAGGGGACCTCCA+AGG - Chr3:50038275-50038294 MsG0380014115.01.T01:intron 55.0%
TTACTGGGTGAGTCACGACC+AGG + Chr3:50039206-50039225 None:intergenic 55.0%
TTGTTGAGGGGTTGTGGGAG+AGG - Chr3:50037268-50037287 MsG0380014115.01.T01:intron 55.0%
! CGCGTTTTACGCGTGACTTG+GGG + Chr3:50038780-50038799 None:intergenic 55.0%
!! TGCCCTCAGAGCACTGGTTA+AGG - Chr3:50035102-50035121 MsG0380014115.01.T01:CDS 55.0%
AACCAGTGCCCTCAGAGCAC+TGG - Chr3:50035096-50035115 MsG0380014115.01.T01:CDS 60.0%
GGCACTACCCGAGTTGTGCA+AGG + Chr3:50039160-50039179 None:intergenic 60.0%
! ACCTCCAAGGGTGTGCCCTT+GGG - Chr3:50038288-50038307 MsG0380014115.01.T01:intron 60.0%
!! AACCAGTGCTCTGAGGGCAC+TGG + Chr3:50035101-50035120 None:intergenic 60.0%
ATATCCCAAGCCCGGCCCGT+CGG + Chr3:50038478-50038497 None:intergenic 65.0%
ATCCACGATCCAAGCCCGGC+CGG + Chr3:50038420-50038439 None:intergenic 65.0%
! CCTCCAAGGGTGTGCCCTTG+GGG - Chr3:50038289-50038308 MsG0380014115.01.T01:intron 65.0%
! GACCTCCAAGGGTGTGCCCT+TGG - Chr3:50038287-50038306 MsG0380014115.01.T01:intron 65.0%
ACGATCCAAGCCCGGCCGGA+CGG + Chr3:50038416-50038435 None:intergenic 70.0%
TTTGCGTCCGTCCGACGGGC+CGG - Chr3:50038464-50038483 MsG0380014115.01.T01:intron 70.0%
! CCCCAAGGGCACACCCTTGG+AGG + Chr3:50038292-50038311 None:intergenic 70.0%
! GTGCCCCAAGGGCACACCCT+TGG + Chr3:50038295-50038314 None:intergenic 70.0%
AGCCCGGCCGGACGGATGGA+CGG + Chr3:50038408-50038427 None:intergenic 75.0%
GACGCCGCCGTCCATCCGTC+CGG - Chr3:50038398-50038417 MsG0380014115.01.T01:intron 75.0%
GTCCGGCCGGGCTTGGATCG+TGG - Chr3:50038415-50038434 MsG0380014115.01.T01:intron 75.0%
TCCAAGCCCGGCCGGACGGA+TGG + Chr3:50038412-50038431 None:intergenic 75.0%
TCCATCCGTCCGGCCGGGCT+TGG - Chr3:50038408-50038427 MsG0380014115.01.T01:intron 75.0%
TTGCGTCCGTCCGACGGGCC+GGG - Chr3:50038465-50038484 MsG0380014115.01.T01:intron 75.0%
! CCCAAGCCCGGCCCGTCGGA+CGG + Chr3:50038474-50038493 None:intergenic 80.0%
! CCGCCGTCCATCCGTCCGGC+CGG - Chr3:50038402-50038421 MsG0380014115.01.T01:intron 80.0%
! CCGGCCGGACGGATGGACGG+CGG + Chr3:50038405-50038424 None:intergenic 80.0%
! CCGTCCGACGGGCCGGGCTT+GGG - Chr3:50038471-50038490 MsG0380014115.01.T01:intron 80.0%
! CGCCGTCCATCCGTCCGGCC+GGG - Chr3:50038403-50038422 MsG0380014115.01.T01:intron 80.0%
! TCCGTCCGACGGGCCGGGCT+TGG - Chr3:50038470-50038489 MsG0380014115.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 50032450 50039998 50032450 ID=MsG0380014115.01;Name=MsG0380014115.01
Chr3 mRNA 50032450 50039998 50032450 ID=MsG0380014115.01.T01;Parent=MsG0380014115.01;Name=MsG0380014115.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|5|0|435
Chr3 exon 50039887 50039998 50039887 ID=MsG0380014115.01.T01:exon:9563;Parent=MsG0380014115.01.T01
Chr3 exon 50036909 50037085 50036909 ID=MsG0380014115.01.T01:exon:9562;Parent=MsG0380014115.01.T01
Chr3 exon 50035002 50035543 50035002 ID=MsG0380014115.01.T01:exon:9561;Parent=MsG0380014115.01.T01
Chr3 exon 50032833 50033020 50032833 ID=MsG0380014115.01.T01:exon:9560;Parent=MsG0380014115.01.T01
Chr3 exon 50032450 50032738 50032450 ID=MsG0380014115.01.T01:exon:9559;Parent=MsG0380014115.01.T01
Chr3 CDS 50039887 50039998 50039887 ID=MsG0380014115.01.T01:cds;Parent=MsG0380014115.01.T01
Chr3 CDS 50036909 50037085 50036909 ID=MsG0380014115.01.T01:cds;Parent=MsG0380014115.01.T01
Chr3 CDS 50035002 50035543 50035002 ID=MsG0380014115.01.T01:cds;Parent=MsG0380014115.01.T01
Chr3 CDS 50032833 50033020 50032833 ID=MsG0380014115.01.T01:cds;Parent=MsG0380014115.01.T01
Chr3 CDS 50032450 50032738 50032450 ID=MsG0380014115.01.T01:cds;Parent=MsG0380014115.01.T01
Gene Sequence

>MsG0380014115.01.T01

ATGTTCTTTATAAATTTTGGTGTTAAAGGTATTCCTGTCAAAGTTTTGGATGCAAAAACTAGAATTGAATTGTATGACAAGTGTCTTATGTTTGAAGACGTTGAAAACCAAGACTTAAGGGCAATAAAGAGTGTTAAGAAGAACCACATATATGGTGGTCAACTCTTCGAAGCATTTATGAAAATTCCTTATACCGCATACATGGTTTGTGGGAAAGATCCCTTTGATAAAGAAGAAATGAAAGAGAAAGCCAAGTTTTTTGCAGACATCAAGCGCCAAATGGAAGCTAAGGATTCAAAAAATAAATCAAAAAAAGAGGGAGAAGGAAATCAAGAAATGGAAGATTCAGCAAAAAATGTTGAAAAAGATACGACATTTTTGACGGTAGCAAAAAGTGGCGTAGTTGAAATTTTGGAAGAGCTTAATTTAAAAGTAAAGGCATCTGACAAGAAAGGCTTATTACTTGTAGAAATGAAGGAATTACAAGCAAAGAAAAGTGGCACAAATGATACAGCATATTTGCTTGCAGCAAAACATGGCATAACCGAAATGATGAGTGTGCTTGAATCTAAACTAAAATATGTCATCCATGAAACTAACACTGAACATGAAAATGCATTACTTATAGCACTGAAGAATACGCAACCGCAAGTTGTTGAGGGGTTGTGGGAGAGGCTTTCTATGGAAACCTTTCAGAGCTTAAGTCTAGAAGTGGATAACAATGAAAACACCATTTTACACATGGCTGCATATCCAAGCATCGACAACGAAAACTCTTGGAAGGTATCTGGTGCGGCCATGCAAATGATGTGGGACATCAAGTGGTATAAGGATAACATACATGTGATACCATCGATGTCGGTTCCTATGGAAACGACTAATAACGGTAAGTCAGCAGCGGCTACAGATGCTTCTGTTTCTACTACAAATGCTGAGTTGGAAAGGCTTAATGCCGAACATGCTGAAAATGTGAAACAGGCTGAAAAGGATATAATCCTCTGGCAAGAGAATGATTACCTAATAAATATAACACTAAAGAAATTTGCTGTGAGCCGGTACCTGAACTATAAGATGAAAGACGAGAAATCTGTCGAAGAACAATCTCAGGAGCTTCAGAATATTGCTCATGAGATCTTTGTTGAAGGGATTCAATTACCTGAGCAGTTTCATATTGCTTTGATAATTGATAAACTACCCCCTGCTTGGAAGGACTTCAAGAATGCCCTTAGGCATGAGACTAAGGAGTTCTCTCTTGAAAGTCTGATTACTCGACTTCGTATTGAAGAAGAGGCAAGAAAAAAGAACTGA

Protein sequence

>MsG0380014115.01.T01

MFFINFGVKGIPVKVLDAKTRIELYDKCLMFEDVENQDLRAIKSVKKNHIYGGQLFEAFMKIPYTAYMVCGKDPFDKEEMKEKAKFFADIKRQMEAKDSKNKSKKEGEGNQEMEDSAKNVEKDTTFLTVAKSGVVEILEELNLKVKASDKKGLLLVEMKELQAKKSGTNDTAYLLAAKHGITEMMSVLESKLKYVIHETNTEHENALLIALKNTQPQVVEGLWERLSMETFQSLSLEVDNNENTILHMAAYPSIDNENSWKVSGAAMQMMWDIKWYKDNIHVIPSMSVPMETTNNGKSAAATDASVSTTNAELERLNAEHAENVKQAEKDIILWQENDYLINITLKKFAVSRYLNYKMKDEKSVEEQSQELQNIAHEIFVEGIQLPEQFHIALIIDKLPPAWKDFKNALRHETKEFSLESLITRLRIEEEARKKN*