AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010203.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010203.01.T01 MTR_2g085090 100.000 123 0 0 1 123 1 123 3.64e-88 251
MsG0280010203.01.T01 MTR_1g091057 100.000 123 0 0 1 123 1 123 3.64e-88 251
MsG0280010203.01.T01 MTR_0157s0070 97.500 120 3 0 4 123 3 122 6.51e-84 241
MsG0280010203.01.T01 MTR_4g034030 97.500 120 3 0 4 123 3 122 6.51e-84 241
MsG0280010203.01.T01 MTR_7g092720 97.500 120 3 0 4 123 3 122 1.03e-83 240
MsG0280010203.01.T01 MTR_4g034030 98.824 85 1 0 39 123 3 87 2.60e-58 175
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010203.01.T01 AT5G62300 87.097 124 15 1 1 123 1 124 1.60e-74 217
MsG0280010203.01.T01 AT5G62300 87.097 124 15 1 1 123 1 124 1.60e-74 217
MsG0280010203.01.T01 AT3G45030 87.097 124 15 1 1 123 1 124 1.60e-74 217
MsG0280010203.01.T01 AT3G47370 87.500 120 15 0 4 123 3 122 4.11e-74 216
MsG0280010203.01.T01 AT3G47370 87.500 120 15 0 4 123 3 122 4.11e-74 216
MsG0280010203.01.T01 AT3G47370 87.500 120 15 0 4 123 3 122 4.11e-74 216

Find 53 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCACCCTTCTCGAGATTT+TGG 0.146140 2:+66161272 None:intergenic
GTGCTAAGGACAAGCATCTT+AGG 0.246369 2:-66161130 MsG0280010203.01.T01:CDS
GGTAGGTTTGGAGGAGTCTC+AGG 0.385792 2:-66161338 MsG0280010203.01.T01:CDS
TCCTCCAAACCTACCTTTGT+TGG 0.397160 2:+66161346 None:intergenic
AAAACCAACAAAGGTAGGTT+TGG 0.397934 2:-66161350 MsG0280010203.01.T01:CDS
GTAATCTGCTTAACAACGTC+TGG 0.415218 2:+66159349 None:intergenic
GCTGTTAGTTTGTGCTGACT+TGG 0.426562 2:-66161159 MsG0280010203.01.T01:intron
TTGAACTCCGTGTGCACAAG+AGG 0.436894 2:-66159393 MsG0280010203.01.T01:CDS
AGGAGCAGATCCACAAGATT+AGG 0.453895 2:-66161318 MsG0280010203.01.T01:CDS
AGGTTCTTCACATTACTACT+AGG 0.481361 2:-66161079 MsG0280010203.01.T01:CDS
GTAATGTGAAGAACCTTAGT+AGG 0.488319 2:+66161086 None:intergenic
TTGTTTCAGGTACCAACACT+TGG 0.488993 2:-66159423 MsG0280010203.01.T01:intron
ACCAGGTTCGATGGTGATAG+AGG 0.489959 2:+66159327 None:intergenic
CGAACCTGGTGTCGAGGTTG+AGG 0.496706 2:-66159314 MsG0280010203.01.T01:CDS
GAAGAATCTGCAAGCTGCTA+GGG 0.497571 2:+66162148 None:intergenic
CAACGTCTGGGGAACTGTAA+AGG 0.512765 2:+66159362 None:intergenic
ACCTGTCAGGATGCCTACTA+AGG 0.514666 2:-66161099 MsG0280010203.01.T01:CDS
AGAAGAATCTGCAAGCTGCT+AGG 0.514710 2:+66162147 None:intergenic
TCCTCCGTGATGGAAATTGA+CGG 0.515655 2:+66162118 None:intergenic
ACCTCTATCACCATCGAACC+TGG 0.519945 2:-66159328 MsG0280010203.01.T01:CDS
GTTTGTGCTGACTTGGTTCG+TGG 0.525514 2:-66161152 MsG0280010203.01.T01:CDS
GCTATAAAACCAACAAAGGT+AGG 0.526218 2:-66161355 MsG0280010203.01.T01:CDS
ACCAACAAAGGTAGGTTTGG+AGG 0.528672 2:-66161347 MsG0280010203.01.T01:CDS
TGCTAAGGACAAGCATCTTA+GGG 0.529942 2:-66161129 MsG0280010203.01.T01:CDS
TTAGGGTCAAGGGACCTGTC+AGG 0.530594 2:-66161112 MsG0280010203.01.T01:CDS
AGGAAGACCCCTTGTGGTGA+AGG 0.532764 2:-66161059 MsG0280010203.01.T01:intron
TAATCTGCTTAACAACGTCT+GGG 0.545211 2:+66159350 None:intergenic
TGACTTGGTTCGTGGTGCTA+AGG 0.550440 2:-66161144 MsG0280010203.01.T01:CDS
AACCTCGACACCAGGTTCGA+TGG 0.552766 2:+66159318 None:intergenic
ACCTTAGTAGGCATCCTGAC+AGG 0.553261 2:+66161098 None:intergenic
GTCACCTCAACCTCGACACC+AGG 0.559183 2:+66159310 None:intergenic
CACCATCGAACCTGGTGTCG+AGG 0.559437 2:-66159320 MsG0280010203.01.T01:CDS
GGACAAGCATCTTAGGGTCA+AGG 0.562678 2:-66161123 MsG0280010203.01.T01:CDS
CAATGACCCTCTTGTGCACA+CGG 0.568374 2:+66159386 None:intergenic
AGAGAGTGATCCTAATCTTG+TGG 0.570336 2:+66161308 None:intergenic
GACAAGCATCTTAGGGTCAA+GGG 0.571703 2:-66161122 MsG0280010203.01.T01:CDS
CAGTGGTGGACATTGATGAA+TGG 0.574837 2:-66159170 MsG0280010203.01.T01:three_prime_UTR
TTCAAATCTATCCCAAGTGT+TGG 0.578144 2:+66159411 None:intergenic
TGTTTCAGGTACCAACACTT+GGG 0.590556 2:-66159422 MsG0280010203.01.T01:intron
GCACGTCCAAAATCTCGAGA+AGG 0.598053 2:-66161278 MsG0280010203.01.T01:CDS
CACGTCCAAAATCTCGAGAA+GGG 0.604361 2:-66161277 MsG0280010203.01.T01:intron
TGTAATACCTTCACCACAAG+GGG 0.605448 2:+66161052 None:intergenic
TGCTGCTATAAAACCAACAA+AGG 0.618513 2:-66161359 MsG0280010203.01.T01:CDS
TCAAGATCAAGCGTCTGCAA+TGG 0.624541 2:+66159288 None:intergenic
ACCGCCGTCAATTTCCATCA+CGG 0.644207 2:-66162122 MsG0280010203.01.T01:five_prime_UTR
AATGTAATACCTTCACCACA+AGG 0.648603 2:+66161050 None:intergenic
ATGTAATACCTTCACCACAA+GGG 0.650245 2:+66161051 None:intergenic
AAACATAACAAGTTAAAACT+CGG 0.650661 2:+66159264 None:intergenic
TGAACTCCGTGTGCACAAGA+GGG 0.668892 2:-66159392 MsG0280010203.01.T01:CDS
ACTACTAGGAAGACCCCTTG+TGG 0.691181 2:-66161065 MsG0280010203.01.T01:CDS
AATCTGCTTAACAACGTCTG+GGG 0.738536 2:+66159351 None:intergenic
GCCGTCAATTTCCATCACGG+AGG 0.751573 2:-66162119 MsG0280010203.01.T01:five_prime_UTR
TCCGTGATGGAAATTGACGG+CGG 0.772736 2:+66162121 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTATCTCATTTTTT+TGG - Chr2:66161254-66161273 MsG0280010203.01.T01:intron 10.0%
!!! TATTTTTTTTTATTATTGTG+TGG - Chr2:66160260-66160279 MsG0280010203.01.T01:intron 10.0%
!! AAGATTATGAATTATATTCT+GGG + Chr2:66161630-66161649 None:intergenic 15.0%
!! AGATAAAAAATTTAGACTAT+GGG + Chr2:66161246-66161265 None:intergenic 15.0%
!!! AATATTCAGTTATTGTTTTA+GGG - Chr2:66159449-66159468 MsG0280010203.01.T01:intron 15.0%
!! AAAAAACATCAAACAAAATG+GGG + Chr2:66159307-66159326 None:intergenic 20.0%
!! AAACATAACAAGTTAAAACT+CGG + Chr2:66162005-66162024 None:intergenic 20.0%
!! AAGAATTTAGTAGAGTTATT+TGG - Chr2:66160540-66160559 MsG0280010203.01.T01:intron 20.0%
!! AATAAAAGTTTCACGATAAT+TGG + Chr2:66160911-66160930 None:intergenic 20.0%
!! AATGTAATGAAAGTAGTAAT+AGG - Chr2:66160483-66160502 MsG0280010203.01.T01:intron 20.0%
!! ATTTCAAAAATCATATCAGA+AGG + Chr2:66161760-66161779 None:intergenic 20.0%
!! ATTTGGATTTAATGATCTAT+AGG - Chr2:66160557-66160576 MsG0280010203.01.T01:intron 20.0%
!! CAAAAAACATCAAACAAAAT+GGG + Chr2:66159308-66159327 None:intergenic 20.0%
!! CAAGATTATGAATTATATTC+TGG + Chr2:66161631-66161650 None:intergenic 20.0%
!! GAGATAAAAAATTTAGACTA+TGG + Chr2:66161247-66161266 None:intergenic 20.0%
!! TCAAAAAACATCAAACAAAA+TGG + Chr2:66159309-66159328 None:intergenic 20.0%
!! TTATGTAAGTTTATCCATAA+AGG + Chr2:66161056-66161075 None:intergenic 20.0%
!! TTTGGATTTAATGATCTATA+GGG - Chr2:66160558-66160577 MsG0280010203.01.T01:intron 20.0%
!!! ATATTCAGTTATTGTTTTAG+GGG - Chr2:66159450-66159469 MsG0280010203.01.T01:intron 20.0%
!!! CAATATTCAGTTATTGTTTT+AGG - Chr2:66159448-66159467 MsG0280010203.01.T01:intron 20.0%
!!! GGATTAATAATTTGAGTTAT+AGG - Chr2:66159238-66159257 MsG0280010203.01.T01:three_prime_UTR 20.0%
!!! TAATTTGAGTTATAGGAATA+TGG - Chr2:66159245-66159264 MsG0280010203.01.T01:three_prime_UTR 20.0%
!!! TTTATCTCATTTTTTTGGAA+AGG - Chr2:66161259-66161278 MsG0280010203.01.T01:intron 20.0%
!!! TTTTCTCAAAAATAGCAAAA+AGG - Chr2:66160740-66160759 MsG0280010203.01.T01:intron 20.0%
!!! TTTTGTTTGATGTTTTTTGA+TGG - Chr2:66159309-66159328 MsG0280010203.01.T01:CDS 20.0%
! AAAAAATAAGCCAATCCAAA+CGG + Chr2:66159476-66159495 None:intergenic 25.0%
! AAAAATAAGCCAATCCAAAT+GGG - Chr2:66159747-66159766 MsG0280010203.01.T01:intron 25.0%
! AAAATTACATTTCCATGACT+TGG + Chr2:66161679-66161698 None:intergenic 25.0%
! AAAGATAGATGTTATGTTAC+TGG - Chr2:66159793-66159812 MsG0280010203.01.T01:intron 25.0%
! AAATGGTTTCAGAAAATTCA+TGG - Chr2:66160422-66160441 MsG0280010203.01.T01:intron 25.0%
! AATTCTTTCAATAACTCACT+AGG + Chr2:66160527-66160546 None:intergenic 25.0%
! ATAAATAACTACACATAGCA+TGG + Chr2:66161500-66161519 None:intergenic 25.0%
! ATGTGTAGTTATTTATCTCA+TGG - Chr2:66161504-66161523 MsG0280010203.01.T01:intron 25.0%
! CAACACAATTGAAAACAAAA+GGG + Chr2:66159284-66159303 None:intergenic 25.0%
! GATTTAATGAAAGTAGTGAT+AGG - Chr2:66160446-66160465 MsG0280010203.01.T01:intron 25.0%
! GCTACAAAAATATAGGAAAT+AGG + Chr2:66162035-66162054 None:intergenic 25.0%
! TCACTAAATATGCTTATGTT+TGG - Chr2:66160067-66160086 MsG0280010203.01.T01:intron 25.0%
! TCATAAAAATGCATACAGAA+TGG + Chr2:66160341-66160360 None:intergenic 25.0%
!! AGCTTTTATATAGCTTTTCA+AGG - Chr2:66159528-66159547 MsG0280010203.01.T01:intron 25.0%
!! CATAACATCTATCTTTTGAA+CGG + Chr2:66159789-66159808 None:intergenic 25.0%
!! TATATTTCCTTTTCTTGTCA+TGG - Chr2:66161563-66161582 MsG0280010203.01.T01:intron 25.0%
!! TGATTGGTTAAAATTCACAT+GGG - Chr2:66161315-66161334 MsG0280010203.01.T01:CDS 25.0%
!! TTGATTGGTTAAAATTCACA+TGG - Chr2:66161314-66161333 MsG0280010203.01.T01:CDS 25.0%
!!! ATGACTTTTTAGAATTCACA+TGG - Chr2:66161604-66161623 MsG0280010203.01.T01:intron 25.0%
!!! TGTTTTCATTAGTTTTACAG+TGG - Chr2:66162079-66162098 MsG0280010203.01.T01:intron 25.0%
!!! TTCCTATATTTTTGTAGCTT+CGG - Chr2:66162037-66162056 MsG0280010203.01.T01:intron 25.0%
!!! TTGAATCTGAATGTTTTGAT+TGG - Chr2:66161299-66161318 MsG0280010203.01.T01:CDS 25.0%
AAAAAGAAGCAGAACACAAA+AGG + Chr2:66160296-66160315 None:intergenic 30.0%
AACCGAAGCTACAAAAATAT+AGG + Chr2:66162042-66162061 None:intergenic 30.0%
AAGACTTGCAAAACACAAAA+AGG + Chr2:66160811-66160830 None:intergenic 30.0%
AATAAGCTGTTTATCCAAAC+AGG + Chr2:66161000-66161019 None:intergenic 30.0%
AGAAACATTGCATACAATTC+AGG + Chr2:66161710-66161729 None:intergenic 30.0%
ATATGGGACCCATATAAATT+TGG + Chr2:66161346-66161365 None:intergenic 30.0%
ATGATATATTCACAAGCTGT+TGG - Chr2:66160606-66160625 MsG0280010203.01.T01:intron 30.0%
CAAAAATAAGCCAATCCAAA+TGG - Chr2:66159746-66159765 MsG0280010203.01.T01:intron 30.0%
CACTTCTATATTCATAGCAT+TGG - Chr2:66159217-66159236 MsG0280010203.01.T01:three_prime_UTR 30.0%
CATAAGCAAAAGTCATCTAT+TGG + Chr2:66160689-66160708 None:intergenic 30.0%
GCAACACAATTGAAAACAAA+AGG + Chr2:66159285-66159304 None:intergenic 30.0%
GTTTGTAGATAGAACAAACA+GGG - Chr2:66160974-66160993 MsG0280010203.01.T01:intron 30.0%
TAGTATTCATAAGCTTGTCA+AGG - Chr2:66159619-66159638 MsG0280010203.01.T01:intron 30.0%
TCAAAAATAGCAAAAAGGCT+AGG - Chr2:66160745-66160764 MsG0280010203.01.T01:intron 30.0%
TGAAATAGTGTTCAATGTGT+AGG - Chr2:66161774-66161793 MsG0280010203.01.T01:intron 30.0%
TGTTTGTAGATAGAACAAAC+AGG - Chr2:66160973-66160992 MsG0280010203.01.T01:intron 30.0%
TTCAACATACTCTCTTTGAT+TGG + Chr2:66161397-66161416 None:intergenic 30.0%
TTTATCCATAAAGGCTTATC+AGG + Chr2:66161047-66161066 None:intergenic 30.0%
! ATTTTTGTAGCTTCGGTTTT+GGG - Chr2:66162044-66162063 MsG0280010203.01.T01:intron 30.0%
! GTTTTTACGCTACTTCAATT+TGG - Chr2:66159340-66159359 MsG0280010203.01.T01:CDS 30.0%
! TTCAGTTGTACTCTGAAAAA+TGG - Chr2:66159877-66159896 MsG0280010203.01.T01:intron 30.0%
!! GCTGTTTTCATAAACTATCT+TGG - Chr2:66161132-66161151 MsG0280010203.01.T01:CDS 30.0%
!! TATTTTTGTAGCTTCGGTTT+TGG - Chr2:66162043-66162062 MsG0280010203.01.T01:intron 30.0%
!!! TTTCATTAGTTTTACAGTGG+TGG - Chr2:66162082-66162101 MsG0280010203.01.T01:intron 30.0%
AAAACCAACAAAGGTAGGTT+TGG - Chr2:66159916-66159935 MsG0280010203.01.T01:intron 35.0%
AAAATTCATGTGCAACTACG+TGG + Chr2:66159428-66159447 None:intergenic 35.0%
AATGTAATACCTTCACCACA+AGG + Chr2:66160219-66160238 None:intergenic 35.0%
AGGTTCTTCACATTACTACT+AGG - Chr2:66160187-66160206 MsG0280010203.01.T01:intron 35.0%
ATAGATCCCACCAAATCATA+TGG + Chr2:66161363-66161382 None:intergenic 35.0%
ATCACTTCCATGACAAGAAA+AGG + Chr2:66161573-66161592 None:intergenic 35.0%
ATGTAATACCTTCACCACAA+GGG + Chr2:66160218-66160237 None:intergenic 35.0%
CAAAAAGGAAAGAGAAGTCT+AGG + Chr2:66160796-66160815 None:intergenic 35.0%
CACATAACAAGCAATAGAGT+AGG + Chr2:66160396-66160415 None:intergenic 35.0%
CACTGAAAATACAACTAGAC+AGG + Chr2:66160771-66160790 None:intergenic 35.0%
CTTATCCTGATAAGCCTTTA+TGG - Chr2:66161039-66161058 MsG0280010203.01.T01:intron 35.0%
GAATGCTTCTAGTCTAGTAT+GGG - Chr2:66161463-66161482 MsG0280010203.01.T01:intron 35.0%
GCTATAAAACCAACAAAGGT+AGG - Chr2:66159911-66159930 MsG0280010203.01.T01:intron 35.0%
GTAATGTGAAGAACCTTAGT+AGG + Chr2:66160183-66160202 None:intergenic 35.0%
GTTACTGGCATGTTACATTA+TGG - Chr2:66159808-66159827 MsG0280010203.01.T01:intron 35.0%
TAATCTGCTTAACAACGTCT+GGG + Chr2:66161919-66161938 None:intergenic 35.0%
TAGATCCCACCAAATCATAT+GGG + Chr2:66161362-66161381 None:intergenic 35.0%
TATATGGGTCCCATATGATT+TGG - Chr2:66161350-66161369 MsG0280010203.01.T01:CDS 35.0%
TGAACGGAATCCCAAAATAA+GGG + Chr2:66159773-66159792 None:intergenic 35.0%
TGAATGCTTCTAGTCTAGTA+TGG - Chr2:66161462-66161481 MsG0280010203.01.T01:intron 35.0%
TGCTGCTATAAAACCAACAA+AGG - Chr2:66159907-66159926 MsG0280010203.01.T01:intron 35.0%
TGTAAAGTTAGCTACAGCAA+TGG - Chr2:66160707-66160726 MsG0280010203.01.T01:intron 35.0%
TTCAAATCTATCCCAAGTGT+TGG + Chr2:66161858-66161877 None:intergenic 35.0%
TTGAACGGAATCCCAAAATA+AGG + Chr2:66159774-66159793 None:intergenic 35.0%
TTGTGTTGTGCTCTATGTTA+CGG - Chr2:66160882-66160901 MsG0280010203.01.T01:intron 35.0%
! AAGTCATCTATTGGAGCATT+TGG + Chr2:66160680-66160699 None:intergenic 35.0%
! CATGGAAGTGATTTTATGTC+TGG - Chr2:66161581-66161600 MsG0280010203.01.T01:intron 35.0%
! CTTGTTATGTGGAGGTTAAA+TGG - Chr2:66160405-66160424 MsG0280010203.01.T01:intron 35.0%
!! CTACTCTATTGCTTGTTATG+TGG - Chr2:66160394-66160413 MsG0280010203.01.T01:intron 35.0%
!! CTGTTTGGATTGGCTTATTT+GGG + Chr2:66161222-66161241 None:intergenic 35.0%
!! TTGGAAAGGTATTTGCTCTT+TGG - Chr2:66161273-66161292 MsG0280010203.01.T01:intron 35.0%
AAATAAGGGCCCATTTGGAT+TGG + Chr2:66159759-66159778 None:intergenic 40.0%
AAGCAATAGAGTAGGACTGA+AGG + Chr2:66160388-66160407 None:intergenic 40.0%
AATCTGCTTAACAACGTCTG+GGG + Chr2:66161918-66161937 None:intergenic 40.0%
AGAGAGTGATCCTAATCTTG+TGG + Chr2:66159961-66159980 None:intergenic 40.0%
ATTTAGACTATGGGCCTGTT+TGG + Chr2:66161237-66161256 None:intergenic 40.0%
CCAAATAAGCCAATCCAAAC+AGG - Chr2:66161220-66161239 MsG0280010203.01.T01:intron 40.0%
GAAACACCTTTCCACTCAAA+CGG + Chr2:66160859-66160878 None:intergenic 40.0%
GAGCTTATGAACTAACACGA+AGG - Chr2:66159689-66159708 MsG0280010203.01.T01:intron 40.0%
GGGACCCATATAAATTTGGT+GGG + Chr2:66161342-66161361 None:intergenic 40.0%
GGGTCCCACCAAATTTATAT+GGG - Chr2:66161335-66161354 MsG0280010203.01.T01:CDS 40.0%
GTAATCTGCTTAACAACGTC+TGG + Chr2:66161920-66161939 None:intergenic 40.0%
TCTGATCTTGTTCCAAGTCA+TGG - Chr2:66161664-66161683 MsG0280010203.01.T01:intron 40.0%
TGCTAAGGACAAGCATCTTA+GGG - Chr2:66160137-66160156 MsG0280010203.01.T01:intron 40.0%
TGGGACCCATATAAATTTGG+TGG + Chr2:66161343-66161362 None:intergenic 40.0%
TGGGTCCCACCAAATTTATA+TGG - Chr2:66161334-66161353 MsG0280010203.01.T01:CDS 40.0%
TGTAATACCTTCACCACAAG+GGG + Chr2:66160217-66160236 None:intergenic 40.0%
TTCTATCTCTTCCGTTTGAG+TGG - Chr2:66160845-66160864 MsG0280010203.01.T01:intron 40.0%
TTGCATAAGCTCAAAACTGC+TGG + Chr2:66159568-66159587 None:intergenic 40.0%
! TGTTTCAGGTACCAACACTT+GGG - Chr2:66161844-66161863 MsG0280010203.01.T01:intron 40.0%
! TTGTTTCAGGTACCAACACT+TGG - Chr2:66161843-66161862 MsG0280010203.01.T01:intron 40.0%
!! ATCCAAATGGGCCCTTATTT+TGG - Chr2:66159759-66159778 MsG0280010203.01.T01:intron 40.0%
!! CCTGTTTGGATTGGCTTATT+TGG + Chr2:66161223-66161242 None:intergenic 40.0%
!! CTCTATTGCTTGTTATGTGG+AGG - Chr2:66160397-66160416 MsG0280010203.01.T01:intron 40.0%
!!! TCCAAATGGGCCCTTATTTT+GGG - Chr2:66159760-66159779 MsG0280010203.01.T01:intron 40.0%
!!! TTATTGTTTTAGGGGCCGTT+TGG - Chr2:66159458-66159477 MsG0280010203.01.T01:intron 40.0%
ACCAACAAAGGTAGGTTTGG+AGG - Chr2:66159919-66159938 MsG0280010203.01.T01:intron 45.0%
AGAAGAATCTGCAAGCTGCT+AGG + Chr2:66159122-66159141 None:intergenic 45.0%
AGCATTAGTGTGAGCTTGTG+AGG - Chr2:66160931-66160950 MsG0280010203.01.T01:intron 45.0%
AGGAGCAGATCCACAAGATT+AGG - Chr2:66159948-66159967 MsG0280010203.01.T01:intron 45.0%
CACGTCCAAAATCTCGAGAA+GGG - Chr2:66159989-66160008 MsG0280010203.01.T01:intron 45.0%
CTGATTCTGTTCTTTGCGTG+TGG - Chr2:66161527-66161546 MsG0280010203.01.T01:intron 45.0%
GAAGAATCTGCAAGCTGCTA+GGG + Chr2:66159121-66159140 None:intergenic 45.0%
GACAAGCATCTTAGGGTCAA+GGG - Chr2:66160144-66160163 MsG0280010203.01.T01:intron 45.0%
GCTTCTAGTCTAGTATGGGT+TGG - Chr2:66161467-66161486 MsG0280010203.01.T01:intron 45.0%
GTGCTAAGGACAAGCATCTT+AGG - Chr2:66160136-66160155 MsG0280010203.01.T01:intron 45.0%
GTTCTTTGCGTGTGGTTTGA+AGG - Chr2:66161535-66161554 MsG0280010203.01.T01:intron 45.0%
TAGAACAAACAGGGCCTGTT+TGG - Chr2:66160983-66161002 MsG0280010203.01.T01:intron 45.0%
TCAAGATCAAGCGTCTGCAA+TGG + Chr2:66161981-66162000 None:intergenic 45.0%
TCCAAAATCTCGAGAAGGGT+GGG - Chr2:66159993-66160012 MsG0280010203.01.T01:intron 45.0%
TCCCAAAATAAGGGCCCATT+TGG + Chr2:66159764-66159783 None:intergenic 45.0%
TCCTCCAAACCTACCTTTGT+TGG + Chr2:66159923-66159942 None:intergenic 45.0%
TCTCTTCCGTTTGAGTGGAA+AGG - Chr2:66160850-66160869 MsG0280010203.01.T01:intron 45.0%
TGAGCTTGTGAGGTTCGTTT+CGG - Chr2:66160941-66160960 MsG0280010203.01.T01:intron 45.0%
! ATGGGTCCCATATGATTTGG+TGG - Chr2:66161353-66161372 MsG0280010203.01.T01:CDS 45.0%
! GAGATTTTGGACGTGCTTAG+AGG + Chr2:66159984-66160003 None:intergenic 45.0%
! GTGTTGGTACCTGAAACAAG+AGG + Chr2:66161842-66161861 None:intergenic 45.0%
! TACGAGCTTCCTCTTGTTTC+AGG - Chr2:66161830-66161849 MsG0280010203.01.T01:intron 45.0%
! TCCTCCGTGATGGAAATTGA+CGG + Chr2:66159151-66159170 None:intergenic 45.0%
!! CAGTGGTGGACATTGATGAA+TGG - Chr2:66162096-66162115 MsG0280010203.01.T01:intron 45.0%
!! GCTGTTAGTTTGTGCTGACT+TGG - Chr2:66160107-66160126 MsG0280010203.01.T01:intron 45.0%
!! TGGGTCCCATATGATTTGGT+GGG - Chr2:66161354-66161373 MsG0280010203.01.T01:CDS 45.0%
!!! GTGTGTTTTTTCCTCCGTGA+TGG + Chr2:66159161-66159180 None:intergenic 45.0%
ACCAGGTTCGATGGTGATAG+AGG + Chr2:66161942-66161961 None:intergenic 50.0%
ACCGCCGTCAATTTCCATCA+CGG - Chr2:66159144-66159163 MsG0280010203.01.T01:three_prime_UTR 50.0%
ACCTCTATCACCATCGAACC+TGG - Chr2:66161938-66161957 MsG0280010203.01.T01:intron 50.0%
ACCTGTCAGGATGCCTACTA+AGG - Chr2:66160167-66160186 MsG0280010203.01.T01:intron 50.0%
ACCTTAGTAGGCATCCTGAC+AGG + Chr2:66160171-66160190 None:intergenic 50.0%
ACTACTAGGAAGACCCCTTG+TGG - Chr2:66160201-66160220 MsG0280010203.01.T01:intron 50.0%
CAACGTCTGGGGAACTGTAA+AGG + Chr2:66161907-66161926 None:intergenic 50.0%
CAATGACCCTCTTGTGCACA+CGG + Chr2:66161883-66161902 None:intergenic 50.0%
GACTATGGGCCTGTTTGGAT+TGG + Chr2:66161232-66161251 None:intergenic 50.0%
GAGTAGGACTGAAGGACAAG+CGG + Chr2:66160380-66160399 None:intergenic 50.0%
GCACGTCCAAAATCTCGAGA+AGG - Chr2:66159988-66160007 MsG0280010203.01.T01:intron 50.0%
GGACAAGCATCTTAGGGTCA+AGG - Chr2:66160143-66160162 MsG0280010203.01.T01:intron 50.0%
GTCCAAAATCTCGAGAAGGG+TGG - Chr2:66159992-66160011 MsG0280010203.01.T01:intron 50.0%
TGAACTCCGTGTGCACAAGA+GGG - Chr2:66161874-66161893 MsG0280010203.01.T01:intron 50.0%
TTGAACTCCGTGTGCACAAG+AGG - Chr2:66161873-66161892 MsG0280010203.01.T01:intron 50.0%
! ACCCACCCTTCTCGAGATTT+TGG + Chr2:66159997-66160016 None:intergenic 50.0%
! TCCGTGATGGAAATTGACGG+CGG + Chr2:66159148-66159167 None:intergenic 50.0%
!! GTTTGTGCTGACTTGGTTCG+TGG - Chr2:66160114-66160133 MsG0280010203.01.T01:intron 50.0%
!! TGACTTGGTTCGTGGTGCTA+AGG - Chr2:66160122-66160141 MsG0280010203.01.T01:intron 50.0%
!!! CTTCGGTTTTGGGACAAAGC+TGG - Chr2:66162054-66162073 MsG0280010203.01.T01:intron 50.0%
!!! GTTTTAGGGGCCGTTTGGAT+TGG - Chr2:66159463-66159482 MsG0280010203.01.T01:intron 50.0%
AACCTCGACACCAGGTTCGA+TGG + Chr2:66161951-66161970 None:intergenic 55.0%
AGGAAGACCCCTTGTGGTGA+AGG - Chr2:66160207-66160226 MsG0280010203.01.T01:intron 55.0%
GCCGTCAATTTCCATCACGG+AGG - Chr2:66159147-66159166 MsG0280010203.01.T01:three_prime_UTR 55.0%
GGTAGGTTTGGAGGAGTCTC+AGG - Chr2:66159928-66159947 MsG0280010203.01.T01:intron 55.0%
TTAGGGTCAAGGGACCTGTC+AGG - Chr2:66160154-66160173 MsG0280010203.01.T01:intron 55.0%
GTCACCTCAACCTCGACACC+AGG + Chr2:66161959-66161978 None:intergenic 60.0%
! CACCATCGAACCTGGTGTCG+AGG - Chr2:66161946-66161965 MsG0280010203.01.T01:intron 60.0%
! CGAACCTGGTGTCGAGGTTG+AGG - Chr2:66161952-66161971 MsG0280010203.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 66159098 66162190 66159098 ID=MsG0280010203.01;Name=MsG0280010203.01
Chr2 mRNA 66159098 66162190 66159098 ID=MsG0280010203.01.T01;Parent=MsG0280010203.01;Name=MsG0280010203.01.T01;_AED=0.41;_eAED=0.41;_QI=98|1|1|1|0.66|0.5|4|196|123
Chr2 exon 66159098 66159436 66159098 ID=MsG0280010203.01.T01:exon:5269;Parent=MsG0280010203.01.T01
Chr2 exon 66161060 66161173 66161060 ID=MsG0280010203.01.T01:exon:5268;Parent=MsG0280010203.01.T01
Chr2 exon 66161278 66161406 66161278 ID=MsG0280010203.01.T01:exon:5267;Parent=MsG0280010203.01.T01
Chr2 exon 66162107 66162190 66162107 ID=MsG0280010203.01.T01:exon:5266;Parent=MsG0280010203.01.T01
Chr2 five_prime_UTR 66162107 66162190 66162107 ID=MsG0280010203.01.T01:five_prime_utr;Parent=MsG0280010203.01.T01
Chr2 five_prime_UTR 66161393 66161406 66161393 ID=MsG0280010203.01.T01:five_prime_utr;Parent=MsG0280010203.01.T01
Chr2 CDS 66161278 66161392 66161278 ID=MsG0280010203.01.T01:cds;Parent=MsG0280010203.01.T01
Chr2 CDS 66161060 66161173 66161060 ID=MsG0280010203.01.T01:cds;Parent=MsG0280010203.01.T01
Chr2 CDS 66159294 66159436 66159294 ID=MsG0280010203.01.T01:cds;Parent=MsG0280010203.01.T01
Chr2 three_prime_UTR 66159098 66159293 66159098 ID=MsG0280010203.01.T01:three_prime_utr;Parent=MsG0280010203.01.T01
Gene Sequence

>MsG0280010203.01.T01

ATGGCGACTTATGCTGCTATAAAACCAACAAAGGTAGGTTTGGAGGAGTCTCAGGAGCAGATCCACAAGATTAGGATCACTCTCTCCTCTAAGCACGTCCAAAATCTCGAGAAGGTTTGTGCTGACTTGGTTCGTGGTGCTAAGGACAAGCATCTTAGGGTCAAGGGACCTGTCAGGATGCCTACTAAGGTTCTTCACATTACTACTAGGAAGACCCCTTGTGGTGAAGGTACCAACACTTGGGATAGATTTGAACTCCGTGTGCACAAGAGGGTCATTGACCTTTACAGTTCCCCAGACGTTGTTAAGCAGATTACCTCTATCACCATCGAACCTGGTGTCGAGGTTGAGGTGACCATTGCAGACGCTTGA
Protein sequence

>MsG0280010203.01.T01

MATYAAIKPTKVGLEESQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA*