Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041941.01.T01 | XP_013443870.1 | 99.329 | 149 | 1 | 0 | 1 | 149 | 1 | 149 | 9.90E-103 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041941.01.T01 | P47922 | 92.617 | 149 | 11 | 0 | 1 | 149 | 1 | 149 | 2.86E-100 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041941.01.T01 | A0A072TWL0 | 99.329 | 149 | 1 | 0 | 1 | 149 | 1 | 149 | 4.73e-103 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000096.01 | MsG0880041941.01 | 0.820375 | 7.091139e-53 | 5.601330e-50 |
| MsG0180000118.01 | MsG0880041941.01 | 0.863962 | 1.711020e-64 | 5.282824e-61 |
| MsG0180001829.01 | MsG0880041941.01 | 0.893756 | 4.672718e-75 | 4.514007e-71 |
| MsG0180003585.01 | MsG0880041941.01 | 0.820069 | 8.333703e-53 | 6.527518e-50 |
| MsG0180003897.01 | MsG0880041941.01 | 0.876697 | 1.136557e-68 | 5.562925e-65 |
| MsG0180004503.01 | MsG0880041941.01 | 0.824701 | 6.998036e-54 | 6.246415e-51 |
| MsG0180004829.01 | MsG0880041941.01 | 0.849346 | 3.429585e-60 | 6.482940e-57 |
| MsG0180005384.01 | MsG0880041941.01 | 0.867879 | 9.880692e-66 | 3.503761e-62 |
| MsG0180005573.01 | MsG0880041941.01 | 0.841967 | 3.445565e-58 | 5.147068e-55 |
| MsG0280006301.01 | MsG0880041941.01 | 0.807803 | 4.228279e-50 | 2.377568e-47 |
| MsG0780041240.01 | MsG0880041941.01 | 0.890476 | 9.516201e-74 | 8.010618e-70 |
| MsG0780041244.01 | MsG0880041941.01 | 0.812806 | 3.522880e-51 | 2.261495e-48 |
| MsG0780041311.01 | MsG0880041941.01 | 0.827059 | 1.928232e-54 | 1.840996e-51 |
| MsG0780041522.01 | MsG0880041941.01 | 0.818563 | 1.836680e-52 | 1.379523e-49 |
| MsG0780041790.01 | MsG0880041941.01 | 0.833213 | 6.069301e-56 | 6.942835e-53 |
| MsG0880041941.01 | MsG0880042517.01 | 0.851077 | 1.122509e-60 | 2.245314e-57 |
| MsG0880041941.01 | MsG0880042896.01 | 0.807074 | 6.037289e-50 | 3.330868e-47 |
| MsG0880041941.01 | MsG0880043076.01 | 0.847975 | 8.229508e-60 | 1.487851e-56 |
| MsG0880041941.01 | MsG0880044204.01 | 0.876703 | 1.130620e-68 | 5.535062e-65 |
| MsG0880041941.01 | MsG0880045836.01 | 0.848351 | 6.476436e-60 | 1.185167e-56 |
| MsG0880041941.01 | MsG0880046220.01 | 0.856888 | 2.372265e-62 | 5.747172e-59 |
| MsG0880041941.01 | MsG0880046236.01 | 0.804671 | 1.931632e-49 | 1.001949e-46 |
| MsG0880041941.01 | MsG0880047310.01 | 0.815687 | 8.135427e-52 | 5.647633e-49 |
| MsG0680031368.01 | MsG0880041941.01 | 0.880637 | 4.656877e-70 | 2.645613e-66 |
| MsG0680035611.01 | MsG0880041941.01 | 0.840106 | 1.061936e-57 | 1.497278e-54 |
| MsG0480019165.01 | MsG0880041941.01 | 0.844952 | 5.495858e-59 | 9.017906e-56 |
| MsG0480020796.01 | MsG0880041941.01 | 0.878423 | 2.841742e-69 | 1.483209e-65 |
| MsG0480020895.01 | MsG0880041941.01 | 0.814780 | 1.293840e-51 | 8.761884e-49 |
| MsG0480020911.01 | MsG0880041941.01 | 0.883887 | 3.066445e-71 | 1.979953e-67 |
| MsG0480021279.01 | MsG0880041941.01 | 0.858997 | 5.606444e-63 | 1.458446e-59 |
| MsG0480021417.01 | MsG0880041941.01 | 0.876124 | 1.792193e-68 | 8.587653e-65 |
| MsG0480022006.01 | MsG0880041941.01 | 0.889946 | 1.535184e-73 | 1.265012e-69 |
| MsG0480022041.01 | MsG0880041941.01 | 0.827937 | 1.187275e-54 | 1.162979e-51 |
| MsG0480022302.01 | MsG0880041941.01 | 0.820516 | 6.581902e-53 | 5.218855e-50 |
| MsG0480022363.01 | MsG0880041941.01 | 0.821556 | 3.791244e-53 | 3.094610e-50 |
| MsG0480022955.01 | MsG0880041941.01 | 0.889033 | 3.478159e-73 | 2.760323e-69 |
| MsG0480023380.01 | MsG0880041941.01 | 0.864641 | 1.050506e-64 | 3.322583e-61 |
| MsG0480023774.01 | MsG0880041941.01 | 0.905936 | 2.532284e-80 | 4.192786e-76 |
| MsG0480023931.01 | MsG0880041941.01 | 0.854078 | 1.563458e-61 | 3.451284e-58 |
| MsG0480023996.01 | MsG0880041941.01 | 0.832025 | 1.196090e-55 | 1.320730e-52 |
| MsG0580024481.01 | MsG0880041941.01 | 0.838504 | 2.765755e-57 | 3.711715e-54 |
| MsG0580024540.01 | MsG0880041941.01 | 0.831830 | 1.336504e-55 | 1.467453e-52 |
| MsG0580024738.01 | MsG0880041941.01 | 0.863879 | 1.816010e-64 | 5.590605e-61 |
| MsG0580024894.01 | MsG0880041941.01 | 0.859131 | 5.113281e-63 | 1.336030e-59 |
| MsG0580025750.01 | MsG0880041941.01 | 0.809880 | 1.520303e-50 | 9.031329e-48 |
| MsG0380015446.01 | MsG0880041941.01 | 0.821924 | 3.116865e-53 | 2.570819e-50 |
| MsG0380015857.01 | MsG0880041941.01 | 0.877651 | 5.295161e-69 | 2.683491e-65 |
| MsG0380016653.01 | MsG0880041941.01 | 0.813333 | 2.698729e-51 | 1.757369e-48 |
| MsG0380016678.01 | MsG0880041941.01 | 0.835594 | 1.532039e-56 | 1.882138e-53 |
| MsG0380016732.01 | MsG0880041941.01 | 0.870324 | 1.590648e-66 | 6.162333e-63 |
| MsG0380016744.01 | MsG0880041941.01 | 0.849238 | 3.676196e-60 | 6.925408e-57 |
| MsG0380016760.01 | MsG0880041941.01 | 0.826813 | 2.207336e-54 | 2.092416e-51 |
| MsG0380017119.01 | MsG0880041941.01 | 0.831706 | 1.433565e-55 | 1.568261e-52 |
| MsG0380017448.01 | MsG0880041941.01 | 0.808397 | 3.159799e-50 | 1.804814e-47 |
| MsG0380018056.01 | MsG0880041941.01 | 0.803027 | 4.239866e-49 | 2.108221e-46 |
| MsG0480018164.01 | MsG0880041941.01 | 0.884689 | 1.547006e-71 | 1.030641e-67 |
| MsG0280006629.01 | MsG0880041941.01 | 0.890696 | 7.803863e-74 | 6.633591e-70 |
| MsG0280006747.01 | MsG0880041941.01 | 0.862576 | 4.597000e-64 | 1.352652e-60 |
| MsG0280007055.01 | MsG0880041941.01 | 0.900168 | 9.592335e-78 | 1.225431e-73 |
| MsG0280010203.01 | MsG0880041941.01 | 0.822922 | 1.828129e-53 | 1.551353e-50 |
| MsG0280010232.01 | MsG0880041941.01 | 0.820847 | 5.523834e-53 | 4.420796e-50 |
| MsG0780036859.01 | MsG0880041941.01 | 0.801531 | 8.617382e-49 | 4.125003e-46 |
| MsG0780038383.01 | MsG0880041941.01 | 0.801802 | 7.582734e-49 | 3.654695e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880041941.01 | MsG0880042771.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041941.01.T01 | MTR_8g007235 | 99.329 | 149 | 1 | 0 | 1 | 149 | 1 | 149 | 1.20e-106 | 300 |
| MsG0880041941.01.T01 | MTR_4g104030 | 64.865 | 148 | 51 | 1 | 3 | 149 | 83 | 230 | 4.04e-66 | 201 |
| MsG0880041941.01.T01 | MTR_8g099450 | 59.184 | 147 | 59 | 1 | 3 | 148 | 85 | 231 | 1.48e-61 | 189 |
| MsG0880041941.01.T01 | MTR_8g021233 | 31.250 | 96 | 66 | 0 | 3 | 98 | 72 | 167 | 6.22e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041941.01.T01 | AT4G09320 | 82.993 | 147 | 25 | 0 | 3 | 149 | 2 | 148 | 4.76e-90 | 258 |
| MsG0880041941.01.T01 | AT5G63310 | 63.514 | 148 | 53 | 1 | 3 | 149 | 84 | 231 | 3.66e-66 | 201 |
| MsG0880041941.01.T01 | AT4G23900 | 59.864 | 147 | 58 | 1 | 3 | 148 | 88 | 234 | 1.08e-61 | 190 |
| MsG0880041941.01.T01 | AT4G11010 | 59.184 | 147 | 59 | 1 | 3 | 148 | 89 | 235 | 1.21e-61 | 190 |
| MsG0880041941.01.T01 | AT4G23895 | 59.864 | 147 | 58 | 1 | 3 | 148 | 318 | 464 | 2.09e-59 | 191 |
| MsG0880041941.01.T01 | AT1G17410 | 34.815 | 135 | 85 | 1 | 3 | 134 | 33 | 167 | 3.59e-21 | 84.7 |
| MsG0880041941.01.T01 | AT1G17410 | 34.615 | 130 | 82 | 1 | 8 | 134 | 1 | 130 | 5.82e-20 | 80.9 |
Find 65 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACACAAAGGATCAAAAT+AGG | 0.223321 | 8:+1495318 | None:intergenic |
| TTAATCTGAACTTGAAGTTT+TGG | 0.248011 | 8:-1495222 | MsG0880041941.01.T01:three_prime_UTR |
| GAAAGCGCCAACAAGGAAAT+TGG | 0.280936 | 8:-1495437 | MsG0880041941.01.T01:CDS |
| CCCTGTTGTTGCCATGATTT+GGG | 0.284074 | 8:-1496189 | MsG0880041941.01.T01:CDS |
| GCCCTGTTGTTGCCATGATT+TGG | 0.311298 | 8:-1496190 | MsG0880041941.01.T01:CDS |
| TGGTGGTGTGAGAGGAAAGG+GGG | 0.321668 | 8:+1497705 | None:intergenic |
| GCCATCTTGATTTCTCTGTT+TGG | 0.335715 | 8:+1497635 | None:intergenic |
| GCAAATTCACGATCAACTTC+AGG | 0.353800 | 8:+1495341 | None:intergenic |
| CCACAAACCAATTTCCTTGT+TGG | 0.361994 | 8:+1495430 | None:intergenic |
| TGTGGTGGTGTGAGAGGAAA+GGG | 0.366610 | 8:+1497703 | None:intergenic |
| TATCAGCAGGTTTGAGAAGA+AGG | 0.368456 | 8:-1496936 | MsG0880041941.01.T01:CDS |
| TCCCAAATCATGGCAACAAC+AGG | 0.371495 | 8:+1496188 | None:intergenic |
| GGTGACTTTGCTGTTGAGAT+TGG | 0.374163 | 8:-1496086 | MsG0880041941.01.T01:CDS |
| CCGATAAATTAAAATAATAA+TGG | 0.378171 | 8:+1495130 | None:intergenic |
| TGCCATGCAGCAGGTCCCTC+AGG | 0.393989 | 8:+1495404 | None:intergenic |
| GGTGGTGTGAGAGGAAAGGG+GGG | 0.405127 | 8:+1497706 | None:intergenic |
| AGGCTGCTTTGCCATGCAGC+AGG | 0.417205 | 8:+1495395 | None:intergenic |
| TGATGCAGGAACGTTATTCA+TGG | 0.430285 | 8:-1495473 | MsG0880041941.01.T01:intron |
| CTCAGATTGAGCAGGGTTTG+TGG | 0.440349 | 8:+1496124 | None:intergenic |
| GTTGCTGTTGTTGCTGTGTT+GGG | 0.441110 | 8:+1497667 | None:intergenic |
| ACAACTGGCAGAAAGATTAT+TGG | 0.443417 | 8:-1496149 | MsG0880041941.01.T01:CDS |
| GGGAAGATTGTTGTGACAAC+TGG | 0.448668 | 8:-1496164 | MsG0880041941.01.T01:CDS |
| CCAACAAGGAAATTGGTTTG+TGG | 0.455431 | 8:-1495430 | MsG0880041941.01.T01:CDS |
| AAGTCACCACGAATAGTTCC+AGG | 0.456893 | 8:+1496101 | None:intergenic |
| GGTTGCTGTTGTTGCTGTGT+TGG | 0.460300 | 8:+1497666 | None:intergenic |
| GTGACTTTGCTGTTGAGATT+GGG | 0.461283 | 8:-1496085 | MsG0880041941.01.T01:CDS |
| ACACACAAAGGATCAAAATA+GGG | 0.468709 | 8:+1495319 | None:intergenic |
| TTAAGTGCAACCACATCAAA+TGG | 0.473983 | 8:+1495159 | None:intergenic |
| GTGTGGTGGTGTGAGAGGAA+AGG | 0.488846 | 8:+1497702 | None:intergenic |
| TTGGTAGAGTACATTGTCTC+TGG | 0.492742 | 8:-1496212 | MsG0880041941.01.T01:CDS |
| TCTGAGCCTGGAACTATTCG+TGG | 0.495457 | 8:-1496107 | MsG0880041941.01.T01:CDS |
| AGTCCTCTTTGAACACCATC+AGG | 0.504010 | 8:+1497587 | None:intergenic |
| TCTACCAATCCGCTGAAGAA+AGG | 0.506686 | 8:+1496227 | None:intergenic |
| AACCCTGCTCAATCTGAGCC+TGG | 0.508261 | 8:-1496119 | MsG0880041941.01.T01:CDS |
| GTTCCAGGCTCAGATTGAGC+AGG | 0.508318 | 8:+1496116 | None:intergenic |
| AATCTTCCCTTCCCAAATCA+TGG | 0.509879 | 8:+1496178 | None:intergenic |
| TCCCTGAGGGACCTGCTGCA+TGG | 0.514590 | 8:-1495406 | MsG0880041941.01.T01:CDS |
| AAGAAGGGTTTCTACTTGAA+AGG | 0.519186 | 8:-1496920 | MsG0880041941.01.T01:intron |
| GTGGTGGTGTGAGAGGAAAG+GGG | 0.519399 | 8:+1497704 | None:intergenic |
| TCTGCAAAGCCTTTCTTCAG+CGG | 0.530736 | 8:-1496236 | MsG0880041941.01.T01:CDS |
| AAAGCCTTTCTTCAGCGGAT+TGG | 0.536682 | 8:-1496231 | MsG0880041941.01.T01:CDS |
| ATCAGCAGGTTTGAGAAGAA+GGG | 0.548918 | 8:-1496935 | MsG0880041941.01.T01:CDS |
| ATTGGTTTGTGGTTCCCTGA+GGG | 0.548939 | 8:-1495419 | MsG0880041941.01.T01:CDS |
| GGCAAAGCAGCCTCCACTCG+TGG | 0.563561 | 8:-1495385 | MsG0880041941.01.T01:CDS |
| TTCCAGGCTCAGATTGAGCA+GGG | 0.574819 | 8:+1496117 | None:intergenic |
| GGAGAGAGTGTGATGTGTGG+TGG | 0.583086 | 8:+1497688 | None:intergenic |
| GCCATGCAGCAGGTCCCTCA+GGG | 0.586568 | 8:+1495405 | None:intergenic |
| AGGTTGGTGAGATTATCAGC+AGG | 0.589081 | 8:-1496949 | MsG0880041941.01.T01:CDS |
| TTCTGTTGAAAGCGCCAACA+AGG | 0.589117 | 8:-1495444 | MsG0880041941.01.T01:CDS |
| GTGATGTGTGGTGGTGTGAG+AGG | 0.590503 | 8:+1497697 | None:intergenic |
| TTCATCATGATCAAGCCTGA+TGG | 0.593169 | 8:-1497602 | MsG0880041941.01.T01:CDS |
| GTGGTGTGAGAGGAAAGGGG+GGG | 0.594817 | 8:+1497707 | None:intergenic |
| GTTGTTGCCATGATTTGGGA+AGG | 0.598008 | 8:-1496185 | MsG0880041941.01.T01:CDS |
| ACTTTGCTGTTGAGATTGGG+AGG | 0.598896 | 8:-1496082 | MsG0880041941.01.T01:intron |
| AAGCCTGATGGTGTTCAAAG+AGG | 0.613792 | 8:-1497590 | MsG0880041941.01.T01:CDS |
| ACTCGTAAATCCACGAGTGG+AGG | 0.617859 | 8:+1495375 | None:intergenic |
| CCCAAATCATGGCAACAACA+GGG | 0.626477 | 8:+1496189 | None:intergenic |
| ACCAAACAGAGAAATCAAGA+TGG | 0.632343 | 8:-1497636 | MsG0880041941.01.T01:exon |
| TTGGGAGAGAGTGTGATGTG+TGG | 0.641202 | 8:+1497685 | None:intergenic |
| TTGTTGCCATGATTTGGGAA+GGG | 0.646062 | 8:-1496184 | MsG0880041941.01.T01:CDS |
| AATTGGTTTGTGGTTCCCTG+AGG | 0.646541 | 8:-1495420 | MsG0880041941.01.T01:CDS |
| AAAAGGCATCAAACACACAA+AGG | 0.654917 | 8:+1495307 | None:intergenic |
| GATACTTAAAACATGTGTTG+TGG | 0.658184 | 8:-1495096 | MsG0880041941.01.T01:three_prime_UTR |
| TTTCTCTGTTTGGTATTGAG+CGG | 0.670460 | 8:+1497645 | None:intergenic |
| TTTACTCGTAAATCCACGAG+TGG | 0.672996 | 8:+1495372 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CCATTATTATTTTAATTTAT+CGG | - | Chr8:1497667-1497686 | MsG0880041941.01.T01:five_prime_UTR | 10.0% |
| !!! | TAGTTAAAATTTAAAACAAA+TGG | + | Chr8:1496794-1496813 | None:intergenic | 10.0% |
| !!! | TTTTTATATATATTTCATGT+TGG | - | Chr8:1495563-1495582 | MsG0880041941.01.T01:intron | 10.0% |
| !!! | TTTTTTTAAATATTTGAAGT+GGG | - | Chr8:1495627-1495646 | MsG0880041941.01.T01:intron | 10.0% |
| !!! | TTTTTTTTAAATATTTGAAG+TGG | - | Chr8:1495626-1495645 | MsG0880041941.01.T01:intron | 10.0% |
| !! | CCGATAAATTAAAATAATAA+TGG | + | Chr8:1497670-1497689 | None:intergenic | 15.0% |
| !! | TTTAACTAAATTTATTTGTG+TGG | - | Chr8:1495750-1495769 | MsG0880041941.01.T01:intron | 15.0% |
| !!! | AAAAAAAACGAAATTTTGAT+AGG | + | Chr8:1495382-1495401 | None:intergenic | 15.0% |
| !!! | ATTCTGGATTTTAAAATATT+TGG | - | Chr8:1496385-1496404 | MsG0880041941.01.T01:intron | 15.0% |
| !!! | TTTGTTTTGAAAAAATATCA+AGG | + | Chr8:1496957-1496976 | None:intergenic | 15.0% |
| !! | CAAAATAAAAAATGAACGAT+AGG | + | Chr8:1497610-1497629 | None:intergenic | 20.0% |
| !! | CAGATAATAATAACCAAATA+AGG | + | Chr8:1495345-1495364 | None:intergenic | 20.0% |
| !! | CTTAATAAATCATCCTTATT+TGG | - | Chr8:1495329-1495348 | MsG0880041941.01.T01:three_prime_UTR | 20.0% |
| !! | TCATGTTATGAATTAGTAAA+TGG | + | Chr8:1496100-1496119 | None:intergenic | 20.0% |
| !!! | CATTTTGAAATTATTTGTGA+TGG | - | Chr8:1496455-1496474 | MsG0880041941.01.T01:intron | 20.0% |
| !!! | TGAATCAATTTTTTTAGCTA+AGG | - | Chr8:1495466-1495485 | MsG0880041941.01.T01:CDS | 20.0% |
| !!! | TTTGATACTTCTAAAATTTC+AGG | - | Chr8:1496359-1496378 | MsG0880041941.01.T01:intron | 20.0% |
| ! | AACTAAAAGTTAGTATGCTA+AGG | + | Chr8:1495906-1495925 | None:intergenic | 25.0% |
| ! | ACTAAAAGTTAGTATGCTAA+GGG | + | Chr8:1495905-1495924 | None:intergenic | 25.0% |
| ! | ACTAGACTTAACATCAAAAA+AGG | + | Chr8:1497510-1497529 | None:intergenic | 25.0% |
| ! | ATAAAACTTAGATAAGAGCT+TGG | - | Chr8:1497049-1497068 | MsG0880041941.01.T01:intron | 25.0% |
| ! | GAATTGTGAATCAAAAAAAG+AGG | + | Chr8:1495257-1495276 | None:intergenic | 25.0% |
| ! | GTTGTTATGAGTTTGTAAAT+TGG | - | Chr8:1495500-1495519 | MsG0880041941.01.T01:intron | 25.0% |
| ! | GTTTGAATTTCAAAACAATC+AGG | + | Chr8:1496288-1496307 | None:intergenic | 25.0% |
| ! | TAAAATCAAGTCTTAAGAAC+AGG | + | Chr8:1496915-1496934 | None:intergenic | 25.0% |
| ! | TACACTTGAAAATCAACATT+TGG | + | Chr8:1496326-1496345 | None:intergenic | 25.0% |
| ! | TGTTTGACTGTTTAGAAATT+GGG | - | Chr8:1495422-1495441 | MsG0880041941.01.T01:CDS | 25.0% |
| ! | TTGAAAATCAACATTTGGAA+AGG | + | Chr8:1496321-1496340 | None:intergenic | 25.0% |
| ! | TTGTTTGACTGTTTAGAAAT+TGG | - | Chr8:1495421-1495440 | MsG0880041941.01.T01:CDS | 25.0% |
| !! | CAAGTTTTCAAATCAAACAA+TGG | + | Chr8:1497184-1497203 | None:intergenic | 25.0% |
| !! | TTAATCTGAACTTGAAGTTT+TGG | - | Chr8:1497575-1497594 | MsG0880041941.01.T01:intron | 25.0% |
| !!! | AGGTTTGAAATTTTTGAATG+TGG | - | Chr8:1496503-1496522 | MsG0880041941.01.T01:intron | 25.0% |
| !!! | ATTTTAATCACTATTGATGC+AGG | - | Chr8:1497310-1497329 | MsG0880041941.01.T01:intron | 25.0% |
| !!! | ATTTTAATTTATCGGTTGTG+AGG | - | Chr8:1497675-1497694 | MsG0880041941.01.T01:five_prime_UTR | 25.0% |
| !!! | CTTGATTTTAAGTTACAGAA+TGG | - | Chr8:1497281-1497300 | MsG0880041941.01.T01:intron | 25.0% |
| !!! | GGTGTTTTGTTGTATAATTT+TGG | - | Chr8:1497722-1497741 | MsG0880041941.01.T01:five_prime_UTR | 25.0% |
| !!! | GTTTTGATTGACTTAAAACA+TGG | + | Chr8:1496989-1497008 | None:intergenic | 25.0% |
| !!! | TGTTGTATAATTTTGGTACA+TGG | - | Chr8:1497729-1497748 | MsG0880041941.01.T01:five_prime_UTR | 25.0% |
| !!! | TGTTTTGAAATTCAAACTTG+AGG | - | Chr8:1496291-1496310 | MsG0880041941.01.T01:CDS | 25.0% |
| AAATAGATGATGTTTGATGC+TGG | + | Chr8:1497128-1497147 | None:intergenic | 30.0% | |
| AACACACAAAGGATCAAAAT+AGG | + | Chr8:1497482-1497501 | None:intergenic | 30.0% | |
| AAGTATCATTGTTAGACATG+AGG | + | Chr8:1497011-1497030 | None:intergenic | 30.0% | |
| AATAGATGATGTTTGATGCT+GGG | + | Chr8:1497127-1497146 | None:intergenic | 30.0% | |
| ACACACAAAGGATCAAAATA+GGG | + | Chr8:1497481-1497500 | None:intergenic | 30.0% | |
| AGCATCAAACATCATCTATT+TGG | - | Chr8:1497127-1497146 | MsG0880041941.01.T01:intron | 30.0% | |
| ATGCTTGACTGTTTAGAAAA+TGG | - | Chr8:1495687-1495706 | MsG0880041941.01.T01:intron | 30.0% | |
| CTAACAATCACTCACTTATT+GGG | + | Chr8:1496202-1496221 | None:intergenic | 30.0% | |
| GACTGAAAAATTTGTGTTTC+AGG | - | Chr8:1495828-1495847 | MsG0880041941.01.T01:intron | 30.0% | |
| GATACTTAAAACATGTGTTG+TGG | - | Chr8:1497701-1497720 | MsG0880041941.01.T01:five_prime_UTR | 30.0% | |
| TCAATAAGCACCTATTAGTA+AGG | + | Chr8:1497078-1497097 | None:intergenic | 30.0% | |
| TCTAACAATCACTCACTTAT+TGG | + | Chr8:1496203-1496222 | None:intergenic | 30.0% | |
| TGCTTGACTGTTTAGAAAAT+GGG | - | Chr8:1495688-1495707 | MsG0880041941.01.T01:intron | 30.0% | |
| ! | CTAAAATTTCAGGTCAATTC+TGG | - | Chr8:1496369-1496388 | MsG0880041941.01.T01:intron | 30.0% |
| ! | GAAAAATTTGTGTTTCAGGT+TGG | - | Chr8:1495832-1495851 | MsG0880041941.01.T01:intron | 30.0% |
| ! | TGATTGACTTAAAACATGGA+AGG | + | Chr8:1496985-1497004 | None:intergenic | 30.0% |
| !! | AAATTGGGTTGTTGATAGTT+TGG | - | Chr8:1495437-1495456 | MsG0880041941.01.T01:CDS | 30.0% |
| !! | AGAGCACTTTTGATTAGTTA+AGG | + | Chr8:1497244-1497263 | None:intergenic | 30.0% |
| !! | GAGCACTTTTGATTAGTTAA+GGG | + | Chr8:1497243-1497262 | None:intergenic | 30.0% |
| !! | TAGAAAATGGGTTGATTTGT+TGG | - | Chr8:1495700-1495719 | MsG0880041941.01.T01:intron | 30.0% |
| !! | TTTTAGCTAAGGCTATTTGT+GGG | - | Chr8:1495477-1495496 | MsG0880041941.01.T01:intron | 30.0% |
| !!! | TTTTTAGCTAAGGCTATTTG+TGG | - | Chr8:1495476-1495495 | MsG0880041941.01.T01:intron | 30.0% |
| AAGAAGGGTTTCTACTTGAA+AGG | - | Chr8:1495877-1495896 | MsG0880041941.01.T01:intron | 35.0% | |
| ACAACTGGCAGAAAGATTAT+TGG | - | Chr8:1496648-1496667 | MsG0880041941.01.T01:intron | 35.0% | |
| ACCAAACAGAGAAATCAAGA+TGG | - | Chr8:1495161-1495180 | MsG0880041941.01.T01:three_prime_UTR | 35.0% | |
| AGCTTGGTATCCTTACTAAT+AGG | - | Chr8:1497065-1497084 | MsG0880041941.01.T01:intron | 35.0% | |
| ATATCAAGGTGACTTACATG+AGG | + | Chr8:1496943-1496962 | None:intergenic | 35.0% | |
| CGTCTAGTATAGTGAATTGT+AGG | - | Chr8:1496881-1496900 | MsG0880041941.01.T01:intron | 35.0% | |
| CTTGTTTGATGCTGAAAGTT+TGG | - | Chr8:1495797-1495816 | MsG0880041941.01.T01:intron | 35.0% | |
| GAGATCCATTTCCAAAGTTT+GGG | - | Chr8:1496162-1496181 | MsG0880041941.01.T01:CDS | 35.0% | |
| TGAGATCCATTTCCAAAGTT+TGG | - | Chr8:1496161-1496180 | MsG0880041941.01.T01:CDS | 35.0% | |
| TGATCAGAGAACAAAACAAC+AGG | + | Chr8:1495948-1495967 | None:intergenic | 35.0% | |
| TTAAGTGCAACCACATCAAA+TGG | + | Chr8:1497641-1497660 | None:intergenic | 35.0% | |
| TTTAGCTAAGGCTATTTGTG+GGG | - | Chr8:1495478-1495497 | MsG0880041941.01.T01:intron | 35.0% | |
| ! | AAAAAAAGAGGTGTGAGAGA+AGG | + | Chr8:1495245-1495264 | None:intergenic | 35.0% |
| ! | AAAAAAGAGGTGTGAGAGAA+GGG | + | Chr8:1495244-1495263 | None:intergenic | 35.0% |
| ! | AAAGTTTGGTAATCTCTCAC+AGG | - | Chr8:1495538-1495557 | MsG0880041941.01.T01:intron | 35.0% |
| ! | ACATATCAATTGAGAAGTGC+TGG | + | Chr8:1496244-1496263 | None:intergenic | 35.0% |
| ! | TTTCTCTGTTTGGTATTGAG+CGG | + | Chr8:1495155-1495174 | None:intergenic | 35.0% |
| !! | AAAAGGCATCAAACACACAA+AGG | + | Chr8:1497493-1497512 | None:intergenic | 35.0% |
| !!! | CTGAACTTGAAGTTTTGGTT+TGG | - | Chr8:1497580-1497599 | MsG0880041941.01.T01:intron | 35.0% |
| AATCTTCCCTTCCCAAATCA+TGG | + | Chr8:1496622-1496641 | None:intergenic | 40.0% | |
| ATCAGCAGGTTTGAGAAGAA+GGG | - | Chr8:1495862-1495881 | MsG0880041941.01.T01:intron | 40.0% | |
| CCACAAACCAATTTCCTTGT+TGG | + | Chr8:1497370-1497389 | None:intergenic | 40.0% | |
| GCAAATTCACGATCAACTTC+AGG | + | Chr8:1497459-1497478 | None:intergenic | 40.0% | |
| GCCATCTTGATTTCTCTGTT+TGG | + | Chr8:1495165-1495184 | None:intergenic | 40.0% | |
| GCTTGTTCGATCTGAAAGTT+TGG | - | Chr8:1495524-1495543 | MsG0880041941.01.T01:intron | 40.0% | |
| TATCAGCAGGTTTGAGAAGA+AGG | - | Chr8:1495861-1495880 | MsG0880041941.01.T01:intron | 40.0% | |
| TGATGCAGGAACGTTATTCA+TGG | - | Chr8:1497324-1497343 | MsG0880041941.01.T01:intron | 40.0% | |
| TGGTGAATGATTCTTGAGAC+TGG | - | Chr8:1496475-1496494 | MsG0880041941.01.T01:intron | 40.0% | |
| TTAGTTAAGGGACAGAGCTT+TGG | + | Chr8:1497231-1497250 | None:intergenic | 40.0% | |
| TTCATCATGATCAAGCCTGA+TGG | - | Chr8:1495195-1495214 | MsG0880041941.01.T01:three_prime_UTR | 40.0% | |
| TTGGTAGAGTACATTGTCTC+TGG | - | Chr8:1496585-1496604 | MsG0880041941.01.T01:intron | 40.0% | |
| TTTACTCGTAAATCCACGAG+TGG | + | Chr8:1497428-1497447 | None:intergenic | 40.0% | |
| ! | TGGATCCCAAACTTTGGAAA+TGG | + | Chr8:1496170-1496189 | None:intergenic | 40.0% |
| ! | TTGTTGCCATGATTTGGGAA+GGG | - | Chr8:1496613-1496632 | MsG0880041941.01.T01:intron | 40.0% |
| !! | CCAACAAGGAAATTGGTTTG+TGG | - | Chr8:1497367-1497386 | MsG0880041941.01.T01:intron | 40.0% |
| !! | GTGACTTTGCTGTTGAGATT+GGG | - | Chr8:1496712-1496731 | MsG0880041941.01.T01:intron | 40.0% |
| !! | TGCGTTTTAGCCATTTGATG+TGG | - | Chr8:1497628-1497647 | MsG0880041941.01.T01:exon | 40.0% |
| !! | TGGGTTGTTGATAGTTTGGT+TGG | - | Chr8:1495441-1495460 | MsG0880041941.01.T01:CDS | 40.0% |
| AAAGCCTTTCTTCAGCGGAT+TGG | - | Chr8:1496566-1496585 | MsG0880041941.01.T01:intron | 45.0% | |
| AACTCGTGGATCCCAAACTT+TGG | + | Chr8:1496176-1496195 | None:intergenic | 45.0% | |
| AAGTCACCACGAATAGTTCC+AGG | + | Chr8:1496699-1496718 | None:intergenic | 45.0% | |
| AGTCCTCTTTGAACACCATC+AGG | + | Chr8:1495213-1495232 | None:intergenic | 45.0% | |
| CACTTATTGGGTGAAACTCG+TGG | + | Chr8:1496190-1496209 | None:intergenic | 45.0% | |
| CCCAAATCATGGCAACAACA+GGG | + | Chr8:1496611-1496630 | None:intergenic | 45.0% | |
| CCCTGTTGTTGCCATGATTT+GGG | - | Chr8:1496608-1496627 | MsG0880041941.01.T01:intron | 45.0% | |
| GATTCTTGAGACTGGACTTC+AGG | - | Chr8:1496483-1496502 | MsG0880041941.01.T01:intron | 45.0% | |
| GGAAAGGGGGGGTTTATATA+TGG | + | Chr8:1495082-1495101 | None:intergenic | 45.0% | |
| GGGAAGATTGTTGTGACAAC+TGG | - | Chr8:1496633-1496652 | MsG0880041941.01.T01:intron | 45.0% | |
| TCCCAAATCATGGCAACAAC+AGG | + | Chr8:1496612-1496631 | None:intergenic | 45.0% | |
| TCTACCAATCCGCTGAAGAA+AGG | + | Chr8:1496573-1496592 | None:intergenic | 45.0% | |
| TCTGCAAAGCCTTTCTTCAG+CGG | - | Chr8:1496561-1496580 | MsG0880041941.01.T01:intron | 45.0% | |
| ! | AAGCCTGATGGTGTTCAAAG+AGG | - | Chr8:1495207-1495226 | MsG0880041941.01.T01:three_prime_UTR | 45.0% |
| ! | GTTGCTGTTGTTGCTGTGTT+GGG | + | Chr8:1495133-1495152 | None:intergenic | 45.0% |
| ! | GTTGTTGCCATGATTTGGGA+AGG | - | Chr8:1496612-1496631 | MsG0880041941.01.T01:intron | 45.0% |
| !! | AATTGGTTTGTGGTTCCCTG+AGG | - | Chr8:1497377-1497396 | MsG0880041941.01.T01:intron | 45.0% |
| !! | ACTTTGCTGTTGAGATTGGG+AGG | - | Chr8:1496715-1496734 | MsG0880041941.01.T01:intron | 45.0% |
| !! | AGGTTGGTGAGATTATCAGC+AGG | - | Chr8:1495848-1495867 | MsG0880041941.01.T01:intron | 45.0% |
| !! | ATTGGTTTGTGGTTCCCTGA+GGG | - | Chr8:1497378-1497397 | MsG0880041941.01.T01:intron | 45.0% |
| !! | GAAAGCGCCAACAAGGAAAT+TGG | - | Chr8:1497360-1497379 | MsG0880041941.01.T01:intron | 45.0% |
| !! | GGTGACTTTGCTGTTGAGAT+TGG | - | Chr8:1496711-1496730 | MsG0880041941.01.T01:intron | 45.0% |
| !! | TTCTGTTGAAAGCGCCAACA+AGG | - | Chr8:1497353-1497372 | MsG0880041941.01.T01:intron | 45.0% |
| ACTCGTAAATCCACGAGTGG+AGG | + | Chr8:1497425-1497444 | None:intergenic | 50.0% | |
| CTCAGATTGAGCAGGGTTTG+TGG | + | Chr8:1496676-1496695 | None:intergenic | 50.0% | |
| GCCCTGTTGTTGCCATGATT+TGG | - | Chr8:1496607-1496626 | MsG0880041941.01.T01:intron | 50.0% | |
| TCTGAGCCTGGAACTATTCG+TGG | - | Chr8:1496690-1496709 | MsG0880041941.01.T01:intron | 50.0% | |
| TTCCAGGCTCAGATTGAGCA+GGG | + | Chr8:1496683-1496702 | None:intergenic | 50.0% | |
| ! | GGTTGCTGTTGTTGCTGTGT+TGG | + | Chr8:1495134-1495153 | None:intergenic | 50.0% |
| ! | TGTGGTGGTGTGAGAGGAAA+GGG | + | Chr8:1495097-1495116 | None:intergenic | 50.0% |
| ! | TTGGGAGAGAGTGTGATGTG+TGG | + | Chr8:1495115-1495134 | None:intergenic | 50.0% |
| AACCCTGCTCAATCTGAGCC+TGG | - | Chr8:1496678-1496697 | MsG0880041941.01.T01:intron | 55.0% | |
| GTTCCAGGCTCAGATTGAGC+AGG | + | Chr8:1496684-1496703 | None:intergenic | 55.0% | |
| ! | GGAGAGAGTGTGATGTGTGG+TGG | + | Chr8:1495112-1495131 | None:intergenic | 55.0% |
| ! | GTGATGTGTGGTGGTGTGAG+AGG | + | Chr8:1495103-1495122 | None:intergenic | 55.0% |
| ! | GTGGTGGTGTGAGAGGAAAG+GGG | + | Chr8:1495096-1495115 | None:intergenic | 55.0% |
| ! | GTGTGGTGGTGTGAGAGGAA+AGG | + | Chr8:1495098-1495117 | None:intergenic | 55.0% |
| ! | TGGTGGTGTGAGAGGAAAGG+GGG | + | Chr8:1495095-1495114 | None:intergenic | 55.0% |
| GGTGGTGTGAGAGGAAAGGG+GGG | + | Chr8:1495094-1495113 | None:intergenic | 60.0% | |
| GTGGTGTGAGAGGAAAGGGG+GGG | + | Chr8:1495093-1495112 | None:intergenic | 60.0% | |
| ! | AGGCTGCTTTGCCATGCAGC+AGG | + | Chr8:1497405-1497424 | None:intergenic | 60.0% |
| GCCATGCAGCAGGTCCCTCA+GGG | + | Chr8:1497395-1497414 | None:intergenic | 65.0% | |
| GGCAAAGCAGCCTCCACTCG+TGG | - | Chr8:1497412-1497431 | MsG0880041941.01.T01:intron | 65.0% | |
| TCCCTGAGGGACCTGCTGCA+TGG | - | Chr8:1497391-1497410 | MsG0880041941.01.T01:intron | 65.0% | |
| TGCCATGCAGCAGGTCCCTC+AGG | + | Chr8:1497396-1497415 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 1495064 | 1497755 | 1495064 | ID=MsG0880041941.01;Name=MsG0880041941.01 |
| Chr8 | mRNA | 1495064 | 1497755 | 1495064 | ID=MsG0880041941.01.T01;Parent=MsG0880041941.01;Name=MsG0880041941.01.T01;_AED=0.35;_eAED=0.35;_QI=116|1|1|1|1|1|4|309|149 |
| Chr8 | exon | 1495064 | 1495487 | 1495064 | ID=MsG0880041941.01.T01:exon:997;Parent=MsG0880041941.01.T01 |
| Chr8 | exon | 1496083 | 1496314 | 1496083 | ID=MsG0880041941.01.T01:exon:996;Parent=MsG0880041941.01.T01 |
| Chr8 | exon | 1496921 | 1496969 | 1496921 | ID=MsG0880041941.01.T01:exon:995;Parent=MsG0880041941.01.T01 |
| Chr8 | exon | 1497586 | 1497755 | 1497586 | ID=MsG0880041941.01.T01:exon:994;Parent=MsG0880041941.01.T01 |
| Chr8 | five_prime_UTR | 1497640 | 1497755 | 1497640 | ID=MsG0880041941.01.T01:five_prime_utr;Parent=MsG0880041941.01.T01 |
| Chr8 | CDS | 1497586 | 1497639 | 1497586 | ID=MsG0880041941.01.T01:cds;Parent=MsG0880041941.01.T01 |
| Chr8 | CDS | 1496921 | 1496969 | 1496921 | ID=MsG0880041941.01.T01:cds;Parent=MsG0880041941.01.T01 |
| Chr8 | CDS | 1496083 | 1496314 | 1496083 | ID=MsG0880041941.01.T01:cds;Parent=MsG0880041941.01.T01 |
| Chr8 | CDS | 1495373 | 1495487 | 1495373 | ID=MsG0880041941.01.T01:cds;Parent=MsG0880041941.01.T01 |
| Chr8 | three_prime_UTR | 1495064 | 1495372 | 1495064 | ID=MsG0880041941.01.T01:three_prime_utr;Parent=MsG0880041941.01.T01 |
| Gene Sequence |
| Protein sequence |
