AlfalfaGEDB | MsG0780041240.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041240.01

KEGG: K02989
GO: GO:0003723 GO:0003735 GO:0006412 GO:0015935
PFAM: PF00177

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041240.01.T01	ACJ85959.1	79.024	205	28	2	1	205	1	190	3.43E-106	314

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041240.01.T01	O65731	97.872	141	3	0	65	205	41	181	1.33E-97	285

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041240.01.T01	B7FMH6	79.024	205	28	2	1	205	1	190	1.64e-106	314

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048922.01	MsG0780041240.01	0.806961	6.380078e-50	3.509727e-47
MsG0080048933.01	MsG0780041240.01	0.802586	5.228468e-49	2.570832e-46
MsG0180000096.01	MsG0780041240.01	0.832114	1.136741e-55	1.258346e-52
MsG0180000118.01	MsG0780041240.01	0.848714	5.139736e-60	9.517715e-57
MsG0180001169.01	MsG0780041240.01	0.847606	1.039943e-59	1.858336e-56
MsG0180001829.01	MsG0780041240.01	0.863547	2.303559e-64	7.009418e-61
MsG0180001837.01	MsG0780041240.01	0.811733	6.041092e-51	3.768725e-48
MsG0180002738.01	MsG0780041240.01	0.861170	1.238166e-63	3.470917e-60
MsG0180003585.01	MsG0780041240.01	0.841854	3.691543e-58	5.495041e-55
MsG0180003897.01	MsG0780041240.01	0.879573	1.115781e-69	6.080128e-66
MsG0180004064.01	MsG0780041240.01	0.836597	8.525779e-57	1.079497e-53
MsG0180004503.01	MsG0780041240.01	0.841427	4.784085e-58	7.027494e-55
MsG0180005384.01	MsG0780041240.01	0.810287	1.242626e-50	7.460213e-48
MsG0180005573.01	MsG0780041240.01	0.851262	9.952480e-61	2.003011e-57
MsG0280006301.01	MsG0780041240.01	0.848951	4.418098e-60	8.244271e-57
MsG0780041076.01	MsG0780041240.01	0.840652	7.642018e-58	1.095768e-54
MsG0780041240.01	MsG0780041244.01	0.808239	3.415185e-50	1.942587e-47
MsG0780041240.01	MsG0780041311.01	0.834224	3.391707e-56	3.999014e-53
MsG0780041240.01	MsG0780041522.01	0.811170	8.005667e-51	4.920443e-48
MsG0780041240.01	MsG0880041941.01	0.890476	9.516201e-74	8.010618e-70
MsG0780041240.01	MsG0880042517.01	0.834912	2.278271e-56	2.742367e-53
MsG0780041240.01	MsG0880043076.01	0.862529	4.751351e-64	1.395912e-60
MsG0780041240.01	MsG0880044204.01	0.885591	7.124378e-72	4.919702e-68
MsG0780041240.01	MsG0880045761.01	-0.823943	1.055141e-53	9.216005e-51
MsG0780041240.01	MsG0880045836.01	0.816357	5.766443e-52	4.077042e-49
MsG0780041240.01	MsG0880046220.01	0.804260	2.352446e-49	1.207353e-46
MsG0780041240.01	MsG0880046486.01	0.808731	2.681116e-50	1.544688e-47
MsG0780041240.01	MsG0880047090.01	0.812694	3.727647e-51	2.386142e-48
MsG0780041240.01	MsG0880047310.01	0.816705	4.818640e-52	3.439293e-49
MsG0680031368.01	MsG0780041240.01	0.816838	4.497591e-52	3.222063e-49
MsG0680032459.01	MsG0780041240.01	0.832323	1.009101e-55	1.123925e-52
MsG0680035611.01	MsG0780041240.01	0.848152	7.351358e-60	1.336490e-56
MsG0480019165.01	MsG0780041240.01	0.855277	7.027538e-62	1.613829e-58
MsG0480020796.01	MsG0780041240.01	0.843385	1.447357e-58	2.260983e-55
MsG0480020848.01	MsG0780041240.01	0.811971	5.361527e-51	3.366062e-48
MsG0480020895.01	MsG0780041240.01	0.804749	1.860469e-49	9.670516e-47
MsG0480020911.01	MsG0780041240.01	0.846286	2.389710e-59	4.092631e-56
MsG0480021279.01	MsG0780041240.01	0.828661	7.941583e-55	7.944919e-52
MsG0480021417.01	MsG0780041240.01	0.863708	2.052852e-64	6.283478e-61
MsG0480022006.01	MsG0780041240.01	0.856030	4.236446e-62	9.975175e-59
MsG0480022302.01	MsG0780041240.01	0.849917	2.376833e-60	4.577336e-57
MsG0480022363.01	MsG0780041240.01	0.817152	3.824216e-52	2.763280e-49
MsG0480022955.01	MsG0780041240.01	0.874348	7.246753e-68	3.250942e-64
MsG0480023380.01	MsG0780041240.01	0.864247	1.394968e-64	4.350572e-61
MsG0480023774.01	MsG0780041240.01	0.888306	6.634599e-73	5.113407e-69
MsG0480023931.01	MsG0780041240.01	0.882216	1.254761e-70	7.578907e-67
MsG0480023996.01	MsG0780041240.01	0.861037	1.359578e-63	3.793639e-60
MsG0580024481.01	MsG0780041240.01	0.858351	8.742462e-63	2.224622e-59
MsG0580024540.01	MsG0780041240.01	0.814954	1.183983e-51	8.055633e-49
MsG0580024738.01	MsG0780041240.01	0.874262	7.747691e-68	3.465102e-64
MsG0580024894.01	MsG0780041240.01	0.841216	5.434273e-58	7.929446e-55
MsG0580025750.01	MsG0780041240.01	0.841080	5.901805e-58	8.574434e-55
MsG0380015446.01	MsG0780041240.01	0.859016	5.533900e-63	1.440385e-59
MsG0380015857.01	MsG0780041240.01	0.869787	2.382526e-66	9.051978e-63
MsG0380016183.01	MsG0780041240.01	0.813709	2.231619e-51	1.468113e-48
MsG0380016653.01	MsG0780041240.01	0.801512	8.694562e-49	4.159950e-46
MsG0380016678.01	MsG0780041240.01	0.840444	8.661562e-58	1.234032e-54
MsG0380016732.01	MsG0780041240.01	0.844436	7.570966e-59	1.222127e-55
MsG0380016744.01	MsG0780041240.01	0.872829	2.354222e-67	9.992287e-64
MsG0380016760.01	MsG0780041240.01	0.822597	2.175946e-53	1.829710e-50
MsG0380016805.01	MsG0780041240.01	0.847317	1.248123e-59	2.209554e-56
MsG0380017119.01	MsG0780041240.01	0.860314	2.252482e-63	6.130615e-60
MsG0380017156.01	MsG0780041240.01	0.820538	6.506945e-53	5.162860e-50
MsG0480018164.01	MsG0780041240.01	0.853754	1.938222e-61	4.232101e-58
MsG0580026446.01	MsG0780041240.01	0.816797	4.595206e-52	3.288102e-49
MsG0580029157.01	MsG0780041240.01	0.851241	1.009203e-60	2.029744e-57
MsG0580030073.01	MsG0780041240.01	0.812095	5.036599e-51	3.172814e-48
MsG0280006629.01	MsG0780041240.01	0.853986	1.662153e-61	3.657548e-58
MsG0280006747.01	MsG0780041240.01	0.874287	7.596904e-68	3.400437e-64
MsG0280007055.01	MsG0780041240.01	0.873708	1.192342e-67	5.224840e-64
MsG0280007084.01	MsG0780041240.01	0.841756	3.918712e-58	5.814859e-55
MsG0280007995.01	MsG0780041240.01	0.818798	1.623992e-52	1.227722e-49
MsG0280010203.01	MsG0780041240.01	0.833685	4.627327e-56	5.368186e-53
MsG0280010232.01	MsG0780041240.01	0.810110	1.356297e-50	8.105901e-48
MsG0780036859.01	MsG0780041240.01	0.885381	8.543231e-72	5.851753e-68

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041240.01.T01	MTR_7g107380	79.024	205	28	2	1	205	1	190	4.47e-110	314
MsG0780041240.01.T01	MTR_1g054310	75.845	207	32	4	1	205	33	223	9.00e-101	292
MsG0780041240.01.T01	MTR_0515s0010	81.250	80	15	0	56	135	1	80	2.46e-43	140
MsG0780041240.01.T01	MTR_0306s0010	81.250	80	15	0	56	135	1	80	2.46e-43	140

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041240.01.T01	AT2G37270	89.865	148	15	58	205	44	191	3.70e-96	279
MsG0780041240.01.T01	AT2G37270	89.865	148	15	58	205	44	191	3.70e-96	279
MsG0780041240.01.T01	AT3G11940	89.189	148	16	58	205	44	191	7.45e-96	278
MsG0780041240.01.T01	AT3G11940	89.189	148	16	58	205	44	191	7.45e-96	278

Find 56 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAATCTAAATAGGTCCTTAA+TGG	0.252801	7:-88642000	MsG0780041240.01.T01:intron
GCATCAACTATAACTTGAAT+TGG	0.326315	7:+88641670	None:intergenic
GAGCTTGACTTCGTTTAGAT+TGG	0.348914	7:+88642373	None:intergenic
TCCTCTTCGTCGTGTTAATC+AGG	0.349057	7:-88639255	MsG0780041240.01.T01:CDS
ACCAGTTGTTAGAAGATATA+TGG	0.352278	7:+88639232	None:intergenic
AGAGAAGATGCAACCAGAAT+TGG	0.353281	7:-88639317	MsG0780041240.01.T01:CDS
GTGCCCGTGAAGCTGCATTT+AGG	0.361118	7:-88639211	MsG0780041240.01.T01:CDS
AAACTTTAAAGATTGAATAA+TGG	0.361736	7:+88639112	None:intergenic
TTGGATCTGCTGGAGTTGTT+AGG	0.369348	7:-88639298	MsG0780041240.01.T01:CDS
ACTTACTAAACAAACCATTA+AGG	0.381929	7:+88641986	None:intergenic
CAAGAGACAGATCGGTAATC+TGG	0.398341	7:+88641909	None:intergenic
GCCATATATCTTCTAACAAC+TGG	0.404354	7:-88639233	MsG0780041240.01.T01:CDS
GGTACTCAAAGAAGCGCTTC+AGG	0.411900	7:-88641828	MsG0780041240.01.T01:CDS
AGCTTGACTTCGTTTAGATT+GGG	0.412691	7:+88642374	None:intergenic
GAAAGAAACTCATGGCTGTT+AGG	0.417495	7:-88641741	MsG0780041240.01.T01:CDS
TGAGGAACATATGGCATGTT+TGG	0.419574	7:+88641862	None:intergenic
CAGATTACCGATCTGTCTCT+TGG	0.434208	7:-88641908	MsG0780041240.01.T01:CDS
AGATTACCGATCTGTCTCTT+GGG	0.440013	7:-88641907	MsG0780041240.01.T01:CDS
GCAACCAGAATTGGATCTGC+TGG	0.442717	7:-88639308	MsG0780041240.01.T01:CDS
TAGTTGATGCTGTCGTCAAC+AGG	0.451278	7:-88641657	MsG0780041240.01.T01:intron
CCAGCAGTGTGAGGAACATA+TGG	0.451914	7:+88641853	None:intergenic
TGCTGGAGTTGTTAGGAGGC+AGG	0.469034	7:-88639291	MsG0780041240.01.T01:CDS
AGATTGGGATCAACTTCGAC+TGG	0.475242	7:+88642389	None:intergenic
CTGCCAAGGGTTCATCCAAC+AGG	0.475684	7:-88639142	MsG0780041240.01.T01:CDS
ATTCTGGTTGCATCTTCTCT+AGG	0.476377	7:+88639320	None:intergenic
TGTTCCTAAATGCAGCTTCA+CGG	0.488373	7:+88639207	None:intergenic
CCATATGTTCCTCACACTGC+TGG	0.491069	7:-88641853	MsG0780041240.01.T01:CDS
CTGTCTCTTGGGGATTACAT+TGG	0.493111	7:-88641896	MsG0780041240.01.T01:CDS
AACTCCAGCAGATCCAATTC+TGG	0.495047	7:+88639304	None:intergenic
TAAGACAATTGCTGAATGCT+TGG	0.507627	7:-88639183	MsG0780041240.01.T01:CDS
GTTCCTAAATGCAGCTTCAC+GGG	0.512374	7:+88639208	None:intergenic
AGTTGTTAGGAGGCAGGCTG+TGG	0.516790	7:-88639285	MsG0780041240.01.T01:CDS
CTTTAAAGATTGAATAATGG+TGG	0.520531	7:+88639115	None:intergenic
GGGGATTACATTGGAGCAAG+AGG	0.537561	7:-88641887	MsG0780041240.01.T01:CDS
AGAAAACAAATTCAGTACAT+TGG	0.540170	7:+88639089	None:intergenic
TTAGTGAGCCTCTCAACAAT+GGG	0.543323	7:+88641793	None:intergenic
ATACCTGTTGGATGAACCCT+TGG	0.559348	7:+88639139	None:intergenic
GATCTGCTGGAGTTGTTAGG+AGG	0.561323	7:-88639295	MsG0780041240.01.T01:CDS
TGAACTCATTAACGCTGCCA+AGG	0.562075	7:-88639156	MsG0780041240.01.T01:CDS
GTTAGTGAGCCTCTCAACAA+TGG	0.562680	7:+88641792	None:intergenic
CTCAGTGTCCCATTGTTGAG+AGG	0.591866	7:-88641801	MsG0780041240.01.T01:CDS
GATTGGGATCAACTTCGACT+GGG	0.607523	7:+88642390	None:intergenic
GATTACCGATCTGTCTCTTG+GGG	0.611070	7:-88641906	MsG0780041240.01.T01:CDS
GTAATCCCCAAGAGACAGAT+CGG	0.613626	7:+88641901	None:intergenic
GAACTCATTAACGCTGCCAA+GGG	0.615553	7:-88639155	MsG0780041240.01.T01:CDS
ATGATGCACGGCAGAAACAA+CGG	0.618587	7:-88641763	MsG0780041240.01.T01:CDS
TAGGATCATTAAGCATGCCA+TGG	0.620948	7:-88641722	MsG0780041240.01.T01:CDS
AGCGACGGTTTCATCAGCCA+TGG	0.634868	7:+88642415	None:intergenic
AATAATGGTGGTATACCTGT+TGG	0.638499	7:+88639127	None:intergenic
TAGCAAGTGAATGATCTCCA+TGG	0.641966	7:+88641705	None:intergenic
ATGTTCCTCACACTGCTGGT+AGG	0.642271	7:-88641849	MsG0780041240.01.T01:CDS
AAACAACGGAAAGAAACTCA+TGG	0.646751	7:-88641749	MsG0780041240.01.T01:CDS
ACTAACTCTCTCATGATGCA+CGG	0.651624	7:-88641775	MsG0780041240.01.T01:CDS
GCCTGATTAACACGACGAAG+AGG	0.651878	7:+88639254	None:intergenic
AACTTCGACTGGGATAGCGA+CGG	0.675722	7:+88642400	None:intergenic
GAGTACCTACCAGCAGTGTG+AGG	0.691601	7:+88641844	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAGTTGAATTATTATTAAT+TGG	-	Chr7:88640545-88640564	MsG0780041240.01.T01:intron	10.0%
!!!	AATACTTTTTTGAATATTTA+AGG	-	Chr7:88641807-88641826	MsG0780041240.01.T01:CDS	10.0%
!!!	AATTATATTATTTTATGTAG+TGG	-	Chr7:88642169-88642188	MsG0780041240.01.T01:intron	10.0%
!!!	ATACTTTTTTGAATATTTAA+GGG	-	Chr7:88641808-88641827	MsG0780041240.01.T01:CDS	10.0%
!!!	TTTCAATAAATATTTTATCT+TGG	-	Chr7:88641054-88641073	MsG0780041240.01.T01:intron	10.0%
!!	AATTTATCTGTTTACATATA+GGG	+	Chr7:88641238-88641257	None:intergenic	15.0%
!!	TAATTTATCTGTTTACATAT+AGG	+	Chr7:88641239-88641258	None:intergenic	15.0%
!!!	AAACTTTAAAGATTGAATAA+TGG	+	Chr7:88642404-88642423	None:intergenic	15.0%
!!!	ATAAATCAACTTGAATTTTT+TGG	-	Chr7:88640188-88640207	MsG0780041240.01.T01:intron	15.0%
!!!	GCTATTTTCATAATTTATAT+TGG	-	Chr7:88639394-88639413	MsG0780041240.01.T01:intron	15.0%
!!!	GTTTTTAAATTGTTAAAACT+TGG	-	Chr7:88640580-88640599	MsG0780041240.01.T01:intron	15.0%
!!	AATAATATGAAACAGATCAA+TGG	+	Chr7:88639990-88640009	None:intergenic	20.0%
!!	AGTCAATATATATCAATCAT+AGG	+	Chr7:88639913-88639932	None:intergenic	20.0%
!!	ATGATTTATTATTTCCCTAT+TGG	-	Chr7:88641221-88641240	MsG0780041240.01.T01:intron	20.0%
!!	ATTGATCTGTTTCATATTAT+TGG	-	Chr7:88639989-88640008	MsG0780041240.01.T01:intron	20.0%
!!	ATTTATAAAAAACAAAGTCC+AGG	+	Chr7:88640411-88640430	None:intergenic	20.0%
!!	GATTACAATATGACAAAATA+AGG	+	Chr7:88641018-88641037	None:intergenic	20.0%
!!	GTATAAGTGATCAAATATAT+AGG	-	Chr7:88640722-88640741	MsG0780041240.01.T01:intron	20.0%
!!	GTCAATATATATCAATCATA+GGG	+	Chr7:88639912-88639931	None:intergenic	20.0%
!!	GTCATATTGTAATCAAATTT+GGG	-	Chr7:88641024-88641043	MsG0780041240.01.T01:intron	20.0%
!!	TATTAACAATTAACTGTGTA+TGG	-	Chr7:88642004-88642023	MsG0780041240.01.T01:intron	20.0%
!!	TCACTTATACATAACAAATA+AGG	+	Chr7:88640712-88640731	None:intergenic	20.0%
!!	TCATATTGTAATCAAATTTG+GGG	-	Chr7:88641025-88641044	MsG0780041240.01.T01:intron	20.0%
!!	TGTCATATTGTAATCAAATT+TGG	-	Chr7:88641023-88641042	MsG0780041240.01.T01:intron	20.0%
!!	TTTATAGCATTATAACTACA+TGG	+	Chr7:88640770-88640789	None:intergenic	20.0%
!!!	ATGCTATAAATATTTTGTGA+TGG	-	Chr7:88640780-88640799	MsG0780041240.01.T01:intron	20.0%
!	AACAAATTATGACATGTTTG+TGG	+	Chr7:88639450-88639469	None:intergenic	25.0%
!	ACAAATTATGACATGTTTGT+GGG	+	Chr7:88639449-88639468	None:intergenic	25.0%
!	ACATATCCTAAAACTAAAAC+TGG	+	Chr7:88642135-88642154	None:intergenic	25.0%
!	ACTTACTAAACAAACCATTA+AGG	+	Chr7:88639530-88639549	None:intergenic	25.0%
!	AGTAATCAATTAATCATGCA+TGG	-	Chr7:88641078-88641097	MsG0780041240.01.T01:intron	25.0%
!	ATTGAAAGGAGAAAATGAAA+TGG	+	Chr7:88641959-88641978	None:intergenic	25.0%
!	CGAGAAACAAATTGTAAATA+AGG	-	Chr7:88642050-88642069	MsG0780041240.01.T01:intron	25.0%
!	GAAAAAAGTGACAAATGATA+AGG	+	Chr7:88640146-88640165	None:intergenic	25.0%
!	GATGATTTATTGTTTCCTAT+TGG	-	Chr7:88640635-88640654	MsG0780041240.01.T01:intron	25.0%
!	TAAATCATCATTTCATTCTC+CGG	+	Chr7:88640624-88640643	None:intergenic	25.0%
!	TCAAATAAGCCAATCTAAAT+AGG	-	Chr7:88639503-88639522	MsG0780041240.01.T01:intron	25.0%
!	TTAATTCAAAGCAAAAACTG+AGG	-	Chr7:88642090-88642109	MsG0780041240.01.T01:intron	25.0%
!	TTGTTTATTCTCACTTTGTT+TGG	-	Chr7:88640502-88640521	MsG0780041240.01.T01:intron	25.0%
!!	CTTTAAAGATTGAATAATGG+TGG	+	Chr7:88642401-88642420	None:intergenic	25.0%
!!	GTAATTTTTACTTGTACGAA+AGG	-	Chr7:88641123-88641142	MsG0780041240.01.T01:intron	25.0%
!!	TGGAAATTGAATTTTTGATG+CGG	-	Chr7:88640009-88640028	MsG0780041240.01.T01:intron	25.0%
!!!	AAGTTTGAAATCTTTTCTTG+TGG	-	Chr7:88641643-88641662	MsG0780041240.01.T01:intron	25.0%
!!!	AATTGTTTGTTTTTTTCCTC+CGG	-	Chr7:88641604-88641623	MsG0780041240.01.T01:intron	25.0%
!!!	ACTATTTTAGCTGTTAAGAT+TGG	-	Chr7:88640885-88640904	MsG0780041240.01.T01:intron	25.0%
!!!	ATAAGAATTTTGACAATGCA+TGG	-	Chr7:88640226-88640245	MsG0780041240.01.T01:intron	25.0%
!!!	CTATTTTAGCTGTTAAGATT+GGG	-	Chr7:88640886-88640905	MsG0780041240.01.T01:intron	25.0%
!!!	GATGATTTTTGTTTTCCTAT+TGG	-	Chr7:88640068-88640087	MsG0780041240.01.T01:intron	25.0%
!!!	GATGATTTTTTGTTTCCTAT+TGG	-	Chr7:88640941-88640960	MsG0780041240.01.T01:intron	25.0%
!!!	TATTTTAGCTGTTAAGATTG+GGG	-	Chr7:88640887-88640906	MsG0780041240.01.T01:intron	25.0%
!!!	TATTTTCAAGTAACTCATGT+CGG	-	Chr7:88639471-88639490	MsG0780041240.01.T01:intron	25.0%
!!!	TTTGTTTTTCGTTGTGTTTT+TGG	-	Chr7:88640808-88640827	MsG0780041240.01.T01:intron	25.0%
	AATACTTGATAGAGAAGGAT+AGG	-	Chr7:88640834-88640853	MsG0780041240.01.T01:intron	30.0%
	AATCTTGCATCATTACTACA+AGG	+	Chr7:88641579-88641598	None:intergenic	30.0%
	ACAGCCATAGTTATCAATAT+TGG	-	Chr7:88641448-88641467	MsG0780041240.01.T01:intron	30.0%
	ACATGCATTATTACTGTTGA+GGG	+	Chr7:88640438-88640457	None:intergenic	30.0%
	ACCAGTTGTTAGAAGATATA+TGG	+	Chr7:88642284-88642303	None:intergenic	30.0%
	ATCCTAAAACTAAAACTGGT+TGG	+	Chr7:88642131-88642150	None:intergenic	30.0%
	ATCTTGCATCATTACTACAA+GGG	+	Chr7:88641578-88641597	None:intergenic	30.0%
	ATTAAAGCAGTAAAGTGTGA+AGG	-	Chr7:88641272-88641291	MsG0780041240.01.T01:intron	30.0%
	ATTCAGGTATTCAAACCAAT+AGG	+	Chr7:88640086-88640105	None:intergenic	30.0%
	CAATCTAAATAGGTCCTTAA+TGG	-	Chr7:88639513-88639532	MsG0780041240.01.T01:intron	30.0%
	CAGCCATAGTTATCAATATT+GGG	-	Chr7:88641449-88641468	MsG0780041240.01.T01:intron	30.0%
	CATTAAGGACCTATTTAGAT+TGG	+	Chr7:88639515-88639534	None:intergenic	30.0%
	CTGCTTAATATGTCTTGATT+TGG	-	Chr7:88640035-88640054	MsG0780041240.01.T01:intron	30.0%
	CTTTAAGCAATAAACATCAC+CGG	+	Chr7:88641626-88641645	None:intergenic	30.0%
	GCATCAACTATAACTTGAAT+TGG	+	Chr7:88639846-88639865	None:intergenic	30.0%
	GGATTAATACTTGATAGAGA+AGG	-	Chr7:88640829-88640848	MsG0780041240.01.T01:intron	30.0%
	GGGAAAATAACAAAATGCAA+AGG	+	Chr7:88639892-88639911	None:intergenic	30.0%
	TACAAAAAATGCCATCATTC+AGG	+	Chr7:88640102-88640121	None:intergenic	30.0%
	TCAGATAGAGCTAATACAAA+AGG	+	Chr7:88640116-88640135	None:intergenic	30.0%
	TCCTAAAACTAAAACTGGTT+GGG	+	Chr7:88642130-88642149	None:intergenic	30.0%
	TTGATTTACTGTTTCCCTAT+TGG	-	Chr7:88640336-88640355	MsG0780041240.01.T01:intron	30.0%
!	CAACCCAATATTGATAACTA+TGG	+	Chr7:88641455-88641474	None:intergenic	30.0%
!!	ATATGTCTTGATTTGGAGAA+TGG	-	Chr7:88640042-88640061	MsG0780041240.01.T01:intron	30.0%
!!	TTGTTTCCTATTGGTTTGAT+TGG	-	Chr7:88640644-88640663	MsG0780041240.01.T01:intron	30.0%
!!!	ATTTTAGCTGTTAAGATTGG+GGG	-	Chr7:88640888-88640907	MsG0780041240.01.T01:intron	30.0%
	AAACAACGGAAAGAAACTCA+TGG	-	Chr7:88639764-88639783	MsG0780041240.01.T01:intron	35.0%
	AAACAAGTTGTTCATCCAAC+AGG	+	Chr7:88639311-88639330	None:intergenic	35.0%
	AACAAGTTGTTCATCCAACA+GGG	+	Chr7:88639310-88639329	None:intergenic	35.0%
	AATAATGGTGGTATACCTGT+TGG	+	Chr7:88642389-88642408	None:intergenic	35.0%
	AATACAAAATGCCATCATCC+AGG	+	Chr7:88641758-88641777	None:intergenic	35.0%
	AATCCTACCCAAATTACACA+CGG	+	Chr7:88641868-88641887	None:intergenic	35.0%
	AATTGTCACAGCTTAAGCTT+TGG	-	Chr7:88641418-88641437	MsG0780041240.01.T01:intron	35.0%
	AGCTTGACTTCGTTTAGATT+GGG	+	Chr7:88639142-88639161	None:intergenic	35.0%
	ATACAAAAACGCCATCATCT+AGG	+	Chr7:88640669-88640688	None:intergenic	35.0%
	ATACAAAAATGCCATCATGC+AGG	+	Chr7:88640370-88640389	None:intergenic	35.0%
	ATCTAGCCAATCAAACCAAT+AGG	+	Chr7:88640959-88640978	None:intergenic	35.0%
	ATCTAGGCAATCAAACCAAT+AGG	+	Chr7:88640653-88640672	None:intergenic	35.0%
	CACATGCATTATTACTGTTG+AGG	+	Chr7:88640439-88640458	None:intergenic	35.0%
	GCCATATATCTTCTAACAAC+TGG	-	Chr7:88642280-88642299	MsG0780041240.01.T01:intron	35.0%
	GTGACAAATGATAAGGAGAA+TGG	+	Chr7:88640139-88640158	None:intergenic	35.0%
	TAAGACAATTGCTGAATGCT+TGG	-	Chr7:88642330-88642349	MsG0780041240.01.T01:intron	35.0%
	TCTCAGCACATAACATTGAA+AGG	+	Chr7:88641973-88641992	None:intergenic	35.0%
	TCTTGCATCATTACTACAAG+GGG	+	Chr7:88641577-88641596	None:intergenic	35.0%
	TGGTTTGAATACCTGAATGA+TGG	-	Chr7:88640088-88640107	MsG0780041240.01.T01:intron	35.0%
!	GAAATCTTTTCTTGTGGTAG+AGG	-	Chr7:88641649-88641668	MsG0780041240.01.T01:intron	35.0%
!!	TAGGTGGGTTGGTTATTAAT+TGG	-	Chr7:88640853-88640872	MsG0780041240.01.T01:intron	35.0%
!!!	TACAACTAGCTTTTGATTGC+TGG	-	Chr7:88641181-88641200	MsG0780041240.01.T01:intron	35.0%
!!!	TCCCAACCAGTTTTAGTTTT+AGG	-	Chr7:88642126-88642145	MsG0780041240.01.T01:intron	35.0%
	AAGTCAAGCTCTTCAACCAA+TGG	-	Chr7:88639152-88639171	MsG0780041240.01.T01:CDS	40.0%
	AATACAAAAGGCCATCATCC+TGG	+	Chr7:88641482-88641501	None:intergenic	40.0%
	AATTACACACGGCATCATCT+AGG	+	Chr7:88641857-88641876	None:intergenic	40.0%
	ACCTACTTACTCATCCGAAT+CGG	-	Chr7:88640301-88640320	MsG0780041240.01.T01:intron	40.0%
	ACTAACTCTCTCATGATGCA+CGG	-	Chr7:88639738-88639757	MsG0780041240.01.T01:intron	40.0%
	ACTTGATAGAGAAGGATAGG+TGG	-	Chr7:88640837-88640856	MsG0780041240.01.T01:intron	40.0%
	AGAGAAGATGCAACCAGAAT+TGG	-	Chr7:88642196-88642215	MsG0780041240.01.T01:intron	40.0%
	AGATGATGCCGTGTGTAATT+TGG	-	Chr7:88641857-88641876	MsG0780041240.01.T01:CDS	40.0%
	AGATTACCGATCTGTCTCTT+GGG	-	Chr7:88639606-88639625	MsG0780041240.01.T01:intron	40.0%
	ATCCAGGCAATCAAACCAAT+AGG	+	Chr7:88641742-88641761	None:intergenic	40.0%
	ATGCAGGCAATCAAACCAAT+AGG	+	Chr7:88640354-88640373	None:intergenic	40.0%
	ATTACACACGGCATCATCTA+GGG	+	Chr7:88641856-88641875	None:intergenic	40.0%
	CCTATAGAAATAAGCCCTGT+TGG	-	Chr7:88639293-88639312	MsG0780041240.01.T01:CDS	40.0%
	CTTGATAGAGAAGGATAGGT+GGG	-	Chr7:88640838-88640857	MsG0780041240.01.T01:intron	40.0%
	GAAAGAAACTCATGGCTGTT+AGG	-	Chr7:88639772-88639791	MsG0780041240.01.T01:intron	40.0%
	GAGCTTGACTTCGTTTAGAT+TGG	+	Chr7:88639143-88639162	None:intergenic	40.0%
	GATGATGCCGTGTGTAATTT+GGG	-	Chr7:88641858-88641877	MsG0780041240.01.T01:CDS	40.0%
	TAAGCAATAAACATCACCGG+AGG	+	Chr7:88641623-88641642	None:intergenic	40.0%
	TAGCAAGTGAATGATCTCCA+TGG	+	Chr7:88639811-88639830	None:intergenic	40.0%
	TAGGATCATTAAGCATGCCA+TGG	-	Chr7:88639791-88639810	MsG0780041240.01.T01:intron	40.0%
	TCAAAGCAAAAACTGAGGCT+TGG	-	Chr7:88642095-88642114	MsG0780041240.01.T01:intron	40.0%
	TCCAGGCAATCAAACCAATA+GGG	+	Chr7:88641741-88641760	None:intergenic	40.0%
	TCTCTATCTGATCATTCTCC+TGG	-	Chr7:88640390-88640409	MsG0780041240.01.T01:intron	40.0%
	TGAGGAACATATGGCATGTT+TGG	+	Chr7:88639654-88639673	None:intergenic	40.0%
	TGCAGGCAATCAAACCAATA+GGG	+	Chr7:88640353-88640372	None:intergenic	40.0%
	TGGTTTGATTGCCTAGATGA+TGG	-	Chr7:88640655-88640674	MsG0780041240.01.T01:intron	40.0%
	TGTTCCTAAATGCAGCTTCA+CGG	+	Chr7:88642309-88642328	None:intergenic	40.0%
	TTAGTGAGCCTCTCAACAAT+GGG	+	Chr7:88639723-88639742	None:intergenic	40.0%
!	AACTTTTCATCCTCCCGATT+CGG	+	Chr7:88640318-88640337	None:intergenic	40.0%
!	ATTCTGGTTGCATCTTCTCT+AGG	+	Chr7:88642196-88642215	None:intergenic	40.0%
!	GAGCTGTTGATTGTTTGAAC+TGG	-	Chr7:88640602-88640621	MsG0780041240.01.T01:intron	40.0%
!	TGGTTTGATTGGCTAGATGA+TGG	-	Chr7:88640961-88640980	MsG0780041240.01.T01:intron	40.0%
!!	CCAACAGGGCTTATTTCTAT+AGG	+	Chr7:88639296-88639315	None:intergenic	40.0%
!!	TAGCTTTTGATTGCTGGAAC+CGG	-	Chr7:88641187-88641206	MsG0780041240.01.T01:intron	40.0%
!!	TCAATATTGGGTTGATAGCC+AGG	-	Chr7:88641461-88641480	MsG0780041240.01.T01:intron	40.0%
	AACTCCAGCAGATCCAATTC+TGG	+	Chr7:88642212-88642231	None:intergenic	45.0%
	AGATTGGGATCAACTTCGAC+TGG	+	Chr7:88639127-88639146	None:intergenic	45.0%
	ATACCTGTTGGATGAACCCT+TGG	+	Chr7:88642377-88642396	None:intergenic	45.0%
	ATAGAGAAGGATAGGTGGGT+TGG	-	Chr7:88640842-88640861	MsG0780041240.01.T01:intron	45.0%
	ATGATGCACGGCAGAAACAA+CGG	-	Chr7:88639750-88639769	MsG0780041240.01.T01:intron	45.0%
	ATGCCGTGTGTAATTTGGGT+AGG	-	Chr7:88641862-88641881	MsG0780041240.01.T01:CDS	45.0%
	CAAGAGACAGATCGGTAATC+TGG	+	Chr7:88639607-88639626	None:intergenic	45.0%
	CAGATTACCGATCTGTCTCT+TGG	-	Chr7:88639605-88639624	MsG0780041240.01.T01:intron	45.0%
	CCTACTTACTCATCCGAATC+GGG	-	Chr7:88640302-88640321	MsG0780041240.01.T01:intron	45.0%
	CTGTCTCTTGGGGATTACAT+TGG	-	Chr7:88639617-88639636	MsG0780041240.01.T01:intron	45.0%
	GAACTCATTAACGCTGCCAA+GGG	-	Chr7:88642358-88642377	MsG0780041240.01.T01:intron	45.0%
	GATTACCGATCTGTCTCTTG+GGG	-	Chr7:88639607-88639626	MsG0780041240.01.T01:intron	45.0%
	GATTGGGATCAACTTCGACT+GGG	+	Chr7:88639126-88639145	None:intergenic	45.0%
	GTAATCCCCAAGAGACAGAT+CGG	+	Chr7:88639615-88639634	None:intergenic	45.0%
	GTTAGTGAGCCTCTCAACAA+TGG	+	Chr7:88639724-88639743	None:intergenic	45.0%
	GTTCCTAAATGCAGCTTCAC+GGG	+	Chr7:88642308-88642327	None:intergenic	45.0%
	TAAGATTGGGGGCTGTTGAT+TGG	-	Chr7:88640899-88640918	MsG0780041240.01.T01:intron	45.0%
	TCCTCTTCGTCGTGTTAATC+AGG	-	Chr7:88642258-88642277	MsG0780041240.01.T01:intron	45.0%
	TGAACTCATTAACGCTGCCA+AGG	-	Chr7:88642357-88642376	MsG0780041240.01.T01:intron	45.0%
	TGGTTTGATTGCCTGCATGA+TGG	-	Chr7:88640356-88640375	MsG0780041240.01.T01:intron	45.0%
	TGGTTTGATTGCCTGGATGA+TGG	-	Chr7:88641744-88641763	MsG0780041240.01.T01:CDS	45.0%
	TGTACGAAAGGAAAGCAACC+TGG	-	Chr7:88641135-88641154	MsG0780041240.01.T01:intron	45.0%
	TTGGATCTGCTGGAGTTGTT+AGG	-	Chr7:88642215-88642234	MsG0780041240.01.T01:intron	45.0%
!	TAGTTGATGCTGTCGTCAAC+AGG	-	Chr7:88639856-88639875	MsG0780041240.01.T01:intron	45.0%
!!	TCCCTATTGGTTTGATTGCC+TGG	-	Chr7:88640349-88640368	MsG0780041240.01.T01:intron	45.0%
	AACTTCGACTGGGATAGCGA+CGG	+	Chr7:88639116-88639135	None:intergenic	50.0%
	ACAACTTGCAACGTGCATCC+AGG	+	Chr7:88641156-88641175	None:intergenic	50.0%
	ACTTACTCATCCGAATCGGG+AGG	-	Chr7:88640305-88640324	MsG0780041240.01.T01:intron	50.0%
	ATGTTCCTCACACTGCTGGT+AGG	-	Chr7:88639664-88639683	MsG0780041240.01.T01:intron	50.0%
	CCAGCAGTGTGAGGAACATA+TGG	+	Chr7:88639663-88639682	None:intergenic	50.0%
	CCATATGTTCCTCACACTGC+TGG	-	Chr7:88639660-88639679	MsG0780041240.01.T01:intron	50.0%
	CTCAGTGTCCCATTGTTGAG+AGG	-	Chr7:88639712-88639731	MsG0780041240.01.T01:intron	50.0%
	GATCTGCTGGAGTTGTTAGG+AGG	-	Chr7:88642218-88642237	MsG0780041240.01.T01:intron	50.0%
	GCAACCAGAATTGGATCTGC+TGG	-	Chr7:88642205-88642224	MsG0780041240.01.T01:intron	50.0%
	GCCTGATTAACACGACGAAG+AGG	+	Chr7:88642262-88642281	None:intergenic	50.0%
	GGGGATTACATTGGAGCAAG+AGG	-	Chr7:88639626-88639645	MsG0780041240.01.T01:intron	50.0%
!	ATTGGGGGCTGTTGATTGGT+TGG	-	Chr7:88640903-88640922	MsG0780041240.01.T01:intron	50.0%
!!	CCCGATTCGGATGAGTAAGT+AGG	+	Chr7:88640305-88640324	None:intergenic	50.0%
!!	GGTACTCAAAGAAGCGCTTC+AGG	-	Chr7:88639685-88639704	MsG0780041240.01.T01:intron	50.0%
!!	TGGGTTGATAGCCAGGATGA+TGG	-	Chr7:88641468-88641487	MsG0780041240.01.T01:intron	50.0%
	AGTTGTTAGGAGGCAGGCTG+TGG	-	Chr7:88642228-88642247	MsG0780041240.01.T01:intron	55.0%
	CTGCCAAGGGTTCATCCAAC+AGG	-	Chr7:88642371-88642390	MsG0780041240.01.T01:intron	55.0%
	GAACGTCGTCGAAGCTCCAT+TGG	+	Chr7:88639171-88639190	None:intergenic	55.0%
	GAGTACCTACCAGCAGTGTG+AGG	+	Chr7:88639672-88639691	None:intergenic	55.0%
	GTGCCCGTGAAGCTGCATTT+AGG	-	Chr7:88642302-88642321	MsG0780041240.01.T01:intron	55.0%
	TGCTGGAGTTGTTAGGAGGC+AGG	-	Chr7:88642222-88642241	MsG0780041240.01.T01:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	88639100	88642435	88639100	ID=MsG0780041240.01;Name=MsG0780041240.01
Chr7	mRNA	88639100	88642435	88639100	ID=MsG0780041240.01.T01;Parent=MsG0780041240.01;Name=MsG0780041240.01.T01;_AED=0.51;_eAED=0.56;_QI=0\|0.5\|0\|1\|0.5\|0.33\|3\|0\|217
Chr7	exon	88642382	88642435	88642382	ID=MsG0780041240.01.T01:exon:20566;Parent=MsG0780041240.01.T01
Chr7	exon	88641658	88642010	88641658	ID=MsG0780041240.01.T01:exon:20565;Parent=MsG0780041240.01.T01
Chr7	exon	88639100	88639346	88639100	ID=MsG0780041240.01.T01:exon:20564;Parent=MsG0780041240.01.T01
Chr7	CDS	88642382	88642435	88642382	ID=MsG0780041240.01.T01:cds;Parent=MsG0780041240.01.T01
Chr7	CDS	88641658	88642010	88641658	ID=MsG0780041240.01.T01:cds;Parent=MsG0780041240.01.T01
Chr7	CDS	88639100	88639346	88639100	ID=MsG0780041240.01.T01:cds;Parent=MsG0780041240.01.T01

Gene Sequence

>MsG0780041240.01.T01

ATGGCTGATGAAACCGTCGCTATCCCAGTCGAAGTTGATCCCAATCTAAACGAAGTCCTTAATGGTTTGTTTAGTAAGTGTGCATTGTGTTTTAGTTTAAAATATGTTGTGATTAATTTACATTTTTGTTATACCAGATTACCGATCTGTCTCTTGGGGATTACATTGGAGCAAGAGGATCCAAACATGCCATATGTTCCTCACACTGCTGGTAGGTACTCAAAGAAGCGCTTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCACGGCAGAAACAACGGAAAGAAACTCATGGCTGTTAGGATCATTAAGCATGCCATGGAGATCATTCACTTGCTAACTGATCAGAATCCAATTCAAGTTATAGTTGATGCTGTCGTCAACAGTGGTCCTAGAGAAGATGCAACCAGAATTGGATCTGCTGGAGTTGTTAGGAGGCAGGCTGTGGATATCTCTCCTCTTCGTCGTGTTAATCAGGCCATATATCTTCTAACAACTGGTGCCCGTGAAGCTGCATTTAGGAACATTAAGACAATTGCTGAATGCTTGGCTGATGAACTCATTAACGCTGCCAAGGGTTCATCCAACAGGTATACCACCATTATTCAATCTTTAAAGTTTCCAATGTACTGA

Protein sequence

>MsG0780041240.01.T01

MADETVAIPVEVDPNLNEVLNGLFSKCALCFSLKYVVINLHFCYTRLPICLLGITLEQEDPNMPYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNRYTTIIQSLKFPMY*