AlfalfaGEDB | MsG0680035611.01

M. sativa cultivar ZhongmuNo.1 / MsG0680035611.01

KEGG: K02993
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF01251

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035611.01.T01	XP_013453041.1	97.906	191	4	0	1	191	1	191	1.88E-133	381

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035611.01.T01	Q9ZNS1	81.579	190	35	0	1	190	1	190	5.37E-114	325

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035611.01.T01	B7FGT0	97.906	191	4	0	1	191	1	191	8.96e-134	381

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048922.01	MsG0680035611.01	0.829005	6.556949e-55	6.625309e-52
MsG0180000096.01	MsG0680035611.01	0.859840	3.130543e-63	8.383576e-60
MsG0180000118.01	MsG0680035611.01	0.882780	7.817774e-71	4.826402e-67
MsG0180001169.01	MsG0680035611.01	0.849258	3.629024e-60	6.840543e-57
MsG0180001829.01	MsG0680035611.01	0.879319	1.373295e-69	7.412849e-66
MsG0180001837.01	MsG0680035611.01	0.870561	1.330119e-66	5.197264e-63
MsG0180002738.01	MsG0680035611.01	0.844393	7.774365e-59	1.253252e-55
MsG0180003585.01	MsG0680035611.01	0.865733	4.766461e-65	1.567274e-61
MsG0180003897.01	MsG0680035611.01	0.906281	1.753886e-80	2.949146e-76
MsG0180004064.01	MsG0680035611.01	0.852481	4.487695e-61	9.389973e-58
MsG0180004503.01	MsG0680035611.01	0.832361	9.875944e-56	1.101330e-52
MsG0180004829.01	MsG0680035611.01	0.836598	8.519483e-57	1.078748e-53
MsG0180005384.01	MsG0680035611.01	0.844495	7.298432e-59	1.180415e-55
MsG0180005573.01	MsG0680035611.01	0.842938	1.904312e-58	2.932517e-55
MsG0280006301.01	MsG0680035611.01	0.831763	1.388160e-55	1.521177e-52
MsG0380014507.01	MsG0680035611.01	0.816112	6.541612e-52	4.594163e-49
MsG0680031368.01	MsG0680035611.01	0.863841	1.865814e-64	5.736578e-61
MsG0680032459.01	MsG0680035611.01	0.823220	1.557349e-53	1.332671e-50
MsG0680035611.01	MsG0780036859.01	0.806034	1.000845e-49	5.376637e-47
MsG0680035611.01	MsG0780038383.01	0.906974	8.354868e-81	1.449982e-76
MsG0680035611.01	MsG0780041058.01	0.841991	3.395745e-58	5.076596e-55
MsG0680035611.01	MsG0780041240.01	0.848152	7.351358e-60	1.336490e-56
MsG0680035611.01	MsG0780041244.01	0.803227	3.854124e-49	1.926282e-46
MsG0680035611.01	MsG0780041311.01	0.818636	1.767925e-52	1.330538e-49
MsG0680035611.01	MsG0780041461.01	0.817437	3.299847e-52	2.403107e-49
MsG0680035611.01	MsG0780041522.01	0.897373	1.497234e-76	1.686289e-72
MsG0680035611.01	MsG0780041790.01	0.835138	1.997375e-56	2.420447e-53
MsG0680035611.01	MsG0880041941.01	0.840106	1.061936e-57	1.497278e-54
MsG0680035611.01	MsG0880042517.01	0.897179	1.806432e-76	2.017151e-72
MsG0680035611.01	MsG0880042896.01	0.828448	8.939686e-55	8.888687e-52
MsG0680035611.01	MsG0880043076.01	0.890192	1.230528e-73	1.024075e-69
MsG0680035611.01	MsG0880043517.01	0.804367	2.234712e-49	1.150141e-46
MsG0680035611.01	MsG0880044204.01	0.827175	1.808698e-54	1.732820e-51
MsG0680035611.01	MsG0880046220.01	0.840486	8.447435e-58	1.205070e-54
MsG0680035611.01	MsG0880046486.01	0.859589	3.724510e-63	9.886821e-60
MsG0680035611.01	MsG0880046760.01	0.831305	1.800339e-55	1.945880e-52
MsG0680035611.01	MsG0880047310.01	0.834943	2.237039e-56	2.695356e-53
MsG0480019165.01	MsG0680035611.01	0.873284	1.657173e-67	7.151603e-64
MsG0480019632.01	MsG0680035611.01	0.831166	1.947197e-55	2.095997e-52
MsG0480020796.01	MsG0680035611.01	0.860171	2.487024e-63	6.737227e-60
MsG0480020895.01	MsG0680035611.01	0.854882	9.156283e-62	2.075112e-58
MsG0480020911.01	MsG0680035611.01	0.908284	2.022985e-81	3.729372e-77
MsG0480021279.01	MsG0680035611.01	0.917391	5.622001e-86	1.619007e-81
MsG0480021417.01	MsG0680035611.01	0.913759	4.239794e-84	1.018347e-79
MsG0480022006.01	MsG0680035611.01	0.859479	4.021492e-63	1.063588e-59
MsG0480022041.01	MsG0680035611.01	0.821480	3.949365e-53	3.216708e-50
MsG0480022363.01	MsG0680035611.01	0.872412	3.244447e-67	1.356422e-63
MsG0480022789.01	MsG0680035611.01	0.861112	1.289478e-63	3.607737e-60
MsG0480022955.01	MsG0680035611.01	0.845329	4.347723e-59	7.220441e-56
MsG0480023380.01	MsG0680035611.01	0.922759	6.473507e-89	2.494399e-84
MsG0480023774.01	MsG0680035611.01	0.882792	7.735391e-71	4.778580e-67
MsG0480023931.01	MsG0680035611.01	0.902880	6.160912e-79	8.905714e-75
MsG0480023996.01	MsG0680035611.01	0.824454	8.000265e-54	7.089119e-51
MsG0580024481.01	MsG0680035611.01	0.823878	1.092900e-53	9.528286e-51
MsG0580024540.01	MsG0680035611.01	0.879786	9.374975e-70	5.151485e-66
MsG0580024738.01	MsG0680035611.01	0.910504	1.739421e-82	3.563268e-78
MsG0580024894.01	MsG0680035611.01	0.833990	3.882467e-56	4.546117e-53
MsG0580025750.01	MsG0680035611.01	0.851640	7.780087e-61	1.584987e-57
MsG0380015446.01	MsG0680035611.01	0.862731	4.118668e-64	1.218645e-60
MsG0380015494.01	MsG0680035611.01	0.848286	6.752812e-60	1.233225e-56
MsG0380015857.01	MsG0680035611.01	0.893508	5.889550e-75	5.625953e-71
MsG0380016607.01	MsG0680035611.01	0.802658	5.053200e-49	2.489167e-46
MsG0380016653.01	MsG0680035611.01	0.843612	1.258961e-58	1.980782e-55
MsG0380016678.01	MsG0680035611.01	0.891222	4.837146e-74	4.201923e-70
MsG0380016732.01	MsG0680035611.01	0.808314	3.290837e-50	1.875577e-47
MsG0380016744.01	MsG0680035611.01	0.855305	6.898251e-62	1.585697e-58
MsG0380016760.01	MsG0680035611.01	0.858009	1.105475e-62	2.781157e-59
MsG0380018056.01	MsG0680035611.01	0.835499	1.619879e-56	1.984471e-53
MsG0480018164.01	MsG0680035611.01	0.879655	1.043555e-69	5.704343e-66
MsG0580029702.01	MsG0680035611.01	0.820074	8.311604e-53	6.511131e-50
MsG0580030073.01	MsG0680035611.01	0.825878	3.686349e-54	3.402612e-51
MsG0280006629.01	MsG0680035611.01	0.901963	1.573968e-78	2.178748e-74
MsG0280006747.01	MsG0680035611.01	0.893886	4.139216e-75	4.020564e-71
MsG0280007055.01	MsG0680035611.01	0.912940	1.094500e-83	2.525272e-79
MsG0280007084.01	MsG0680035611.01	0.836982	6.798699e-57	8.709259e-54
MsG0280007643.01	MsG0680035611.01	0.805565	1.255448e-49	6.663489e-47
MsG0280007995.01	MsG0680035611.01	0.896667	2.961533e-76	3.235931e-72
MsG0280010203.01	MsG0680035611.01	0.819255	1.278223e-52	9.786506e-50
MsG0280010519.01	MsG0680035611.01	0.825204	5.325515e-54	4.822028e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035611.01.T01	MTR_6g085000	97.906	191	4	0	1	191	1	191	2.27e-137	381
MsG0680035611.01.T01	MTR_6g021670	97.382	191	5	0	1	191	1	191	5.01e-137	380
MsG0680035611.01.T01	MTR_8g087480	63.636	44	8	1	145	188	51	86	8.16e-12	59.7

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035611.01.T01	AT1G48830	79.058	191	40	1	191	1	191	1.54e-114	324
MsG0680035611.01.T01	AT1G48830	79.058	191	40	1	191	1	191	1.54e-114	324
MsG0680035611.01.T01	AT3G02560	79.581	191	39	1	191	1	191	5.73e-113	320
MsG0680035611.01.T01	AT3G02560	79.581	191	39	1	191	1	191	5.73e-113	320
MsG0680035611.01.T01	AT3G02560	79.581	191	39	1	191	1	191	5.73e-113	320
MsG0680035611.01.T01	AT5G16130	80.319	188	37	1	188	1	188	2.00e-112	318

Find 65 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACAGCCAAGTTGATGTTTC+TGG	0.145762	6:+109315386	MsG0680035611.01.T01:intron
AAATTGTTTATTTGCTTAAT+TGG	0.151486	6:+109316799	MsG0680035611.01.T01:three_prime_UTR
ATATGATGAATGTTTATTTA+TGG	0.222500	6:+109316564	MsG0680035611.01.T01:three_prime_UTR
GTTGAAGCTCTCTATGATTC+TGG	0.238608	6:+109316596	MsG0680035611.01.T01:three_prime_UTR
TATGATACATTATTTATTAT+AGG	0.254565	6:+109316640	MsG0680035611.01.T01:three_prime_UTR
TCCTCAATCTGTAGGGGATA+TGG	0.261869	6:-109315430	None:intergenic
AGAATCTACGCCTCAGTAAC+AGG	0.280462	6:-109316506	None:intergenic
TGAGCAGCGGAGCCTTTCTT+TGG	0.288203	6:-109316058	None:intergenic
ATAGTTTACCTTCATGATCT+TGG	0.292174	6:-109316188	None:intergenic
TTATTATGAAAAGTCTTTCT+TGG	0.331298	6:-109316723	None:intergenic
AAATTCACGTCAAGCTCGTT+AGG	0.363074	6:+109315465	MsG0680035611.01.T01:CDS
CGTACTAGATACAGAATTGA+TGG	0.367485	6:+109316163	MsG0680035611.01.T01:CDS
TATAATAAATAATGTATCAT+AGG	0.369192	6:-109316638	None:intergenic
TATTATGAAAAGTCTTTCTT+GGG	0.377421	6:-109316722	None:intergenic
TGTTTATTTGCTTAATTGGT+TGG	0.379570	6:+109316803	MsG0680035611.01.T01:three_prime_UTR
GTTTATTTGCTTAATTGGTT+GGG	0.381829	6:+109316804	MsG0680035611.01.T01:three_prime_UTR
GTTGCAGGCTTTGTTTGATC+TGG	0.412438	6:+109315225	MsG0680035611.01.T01:intron
CGCTGAGCCTACTGAATTTG+AGG	0.426295	6:+109315092	MsG0680035611.01.T01:CDS
GCAGCGGAGCCTTTCTTTGG+TGG	0.435938	6:-109316055	None:intergenic
TTGTGAATATGTTTACTTCA+AGG	0.441187	6:+109315046	MsG0680035611.01.T01:exon
ATCTGCATCTTCTTCGGCTA+AGG	0.454250	6:+109313042	MsG0680035611.01.T01:five_prime_UTR
GCAGTTTACAGGAAACTCTC+AGG	0.456482	6:+109316461	MsG0680035611.01.T01:CDS
AGCCGCATCTGCATCTTCTT+CGG	0.466019	6:+109313036	MsG0680035611.01.T01:five_prime_UTR
ATTTGAGGAGTCAGTTGGAC+AGG	0.472058	6:+109315107	MsG0680035611.01.T01:CDS
TGTTACCTGCTGAGATTGTT+GGG	0.479284	6:+109316137	MsG0680035611.01.T01:CDS
TGGTGGCCTGACGATTCTCC+TGG	0.483590	6:-109316038	None:intergenic
GTGTTACCTGCTGAGATTGT+TGG	0.484291	6:+109316136	MsG0680035611.01.T01:CDS
TCCCCTACAGATTGAGGAAG+GGG	0.499187	6:+109315435	MsG0680035611.01.T01:CDS
CGTGGACAGCAGTGAGTGTA+CGG	0.505350	6:-109316093	None:intergenic
ATCGTCAGGCCACCAAAGAA+AGG	0.508890	6:+109316046	MsG0680035611.01.T01:CDS
TTCTGGAAACCGCAAGGCTG+TGG	0.509249	6:+109315403	MsG0680035611.01.T01:CDS
TCCATATCCCCTACAGATTG+AGG	0.509912	6:+109315429	MsG0680035611.01.T01:CDS
TTGCCACCAGGAGAATCGTC+AGG	0.510117	6:+109316032	MsG0680035611.01.T01:CDS
GAAGAAAATCAGCAAGGACA+AGG	0.510615	6:+109315068	MsG0680035611.01.T01:CDS
GAACCCCTTCCTCAATCTGT+AGG	0.515858	6:-109315438	None:intergenic
AACCCCTTCCTCAATCTGTA+GGG	0.520673	6:-109315437	None:intergenic
ACTGAATTTGAGGAGTCAGT+TGG	0.548538	6:+109315102	MsG0680035611.01.T01:CDS
AATTCACGTCAAGCTCGTTA+GGG	0.550766	6:+109315466	MsG0680035611.01.T01:CDS
GCTGCGTGGACGCTGAGCAG+CGG	0.558388	6:-109316071	None:intergenic
CGTTTCCCAACAATCTCAGC+AGG	0.558735	6:-109316142	None:intergenic
GTTTGAGTACCCTGTTACTG+AGG	0.572498	6:+109316496	MsG0680035611.01.T01:CDS
TATCCCCTACAGATTGAGGA+AGG	0.573232	6:+109315433	MsG0680035611.01.T01:CDS
GGTTTCCAGAAACATCAACT+TGG	0.575562	6:-109315391	None:intergenic
TAAATGATATATTAAAATGA+CGG	0.578845	6:+109316776	MsG0680035611.01.T01:three_prime_UTR
ATGTAATCCTCATTGCCACC+AGG	0.584954	6:+109316020	MsG0680035611.01.T01:CDS
CGATTCTCCTGGTGGCAATG+AGG	0.590532	6:-109316027	None:intergenic
AAGAAAATCAGCAAGGACAA+GGG	0.599976	6:+109315069	MsG0680035611.01.T01:CDS
CAGTTTACAGGAAACTCTCA+GGG	0.612531	6:+109316462	MsG0680035611.01.T01:CDS
TGAGAAGAAATTCAGCGGAA+AGG	0.621961	6:+109315493	MsG0680035611.01.T01:CDS
TGATGTTTCTGGAAACCGCA+AGG	0.622049	6:+109315397	MsG0680035611.01.T01:CDS
ATCCCCTACAGATTGAGGAA+GGG	0.622569	6:+109315434	MsG0680035611.01.T01:CDS
ACTGACTCCTCAAATTCAGT+AGG	0.622702	6:-109315099	None:intergenic
AGCCGAAGAAGATGCAGATG+CGG	0.627417	6:-109313038	None:intergenic
ACCCCTTCCTCAATCTGTAG+GGG	0.633929	6:-109315436	None:intergenic
TGATGGATCCAAGATCATGA+AGG	0.639271	6:+109316180	MsG0680035611.01.T01:CDS
TGTCCACGAGGCAATGCTCG+AGG	0.642990	6:+109316108	MsG0680035611.01.T01:CDS
TTCAAGGAAGAAAATCAGCA+AGG	0.648771	6:+109315062	MsG0680035611.01.T01:CDS
GCAGTGAGTGTACGGCTGCG+TGG	0.657285	6:-109316085	None:intergenic
TACACTCACTGCTGTCCACG+AGG	0.659160	6:+109316096	MsG0680035611.01.T01:CDS
TGGCCTGACGATTCTCCTGG+TGG	0.662830	6:-109316035	None:intergenic
ATGTGATATAACTTGTGTTG+CGG	0.669488	6:+109316752	MsG0680035611.01.T01:three_prime_UTR
TATGGATAACCACAGCCTTG+CGG	0.675676	6:-109315412	None:intergenic
GAATCTACGCCTCAGTAACA+GGG	0.678065	6:-109316505	None:intergenic
CATCCTCGAGCATTGCCTCG+TGG	0.690997	6:-109316111	None:intergenic
GAGCTTGAGAAGAAATTCAG+CGG	0.694607	6:+109315488	MsG0680035611.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAATGATATATTAAAATGA+CGG	+	Chr6:109316776-109316795	MsG0680035611.01.T01:three_prime_UTR	10.0%
!!	TATAATAAATAATGTATCAT+AGG	-	Chr6:109316641-109316660	None:intergenic	10.0%
!!	TATGATACATTATTTATTAT+AGG	+	Chr6:109316640-109316659	MsG0680035611.01.T01:three_prime_UTR	10.0%
!!!	GTAATTTTTATAAACTAAAT+TGG	-	Chr6:109313523-109313542	None:intergenic	10.0%
!!!	TTCATTTGAAATTTAAAAAT+GGG	+	Chr6:109313235-109313254	MsG0680035611.01.T01:intron	10.0%
!!!	TTTCATTTGAAATTTAAAAA+TGG	+	Chr6:109313234-109313253	MsG0680035611.01.T01:intron	10.0%
!!	AAATTGTTTATTTGCTTAAT+TGG	+	Chr6:109316799-109316818	MsG0680035611.01.T01:three_prime_UTR	15.0%
!!	ATATGATGAATGTTTATTTA+TGG	+	Chr6:109316564-109316583	MsG0680035611.01.T01:three_prime_UTR	15.0%
!!	ATTGTTATAGAAATAGATAA+AGG	+	Chr6:109313418-109313437	MsG0680035611.01.T01:intron	15.0%
!!!	AAAAATCGTTTTTTATTGAT+TGG	+	Chr6:109314429-109314448	MsG0680035611.01.T01:intron	15.0%
!!	AAATTGGAACAAAAAATTGT+CGG	-	Chr6:109315590-109315609	None:intergenic	20.0%
!!	AACTTTGAATTCAATTAACA+TGG	-	Chr6:109313124-109313143	None:intergenic	20.0%
!!	AGAAACATTAACAAGAAAAA+TGG	-	Chr6:109314593-109314612	None:intergenic	20.0%
!!	AGAATAAAGTTCTTGAAATA+AGG	-	Chr6:109315639-109315658	None:intergenic	20.0%
!!	ATGAAAACAGTTTATGATAA+AGG	+	Chr6:109313488-109313507	MsG0680035611.01.T01:intron	20.0%
!!	CAAATTATTTAGTGTATGTT+TGG	-	Chr6:109315904-109315923	None:intergenic	20.0%
!!	GAAACATTAACAAGAAAAAT+GGG	-	Chr6:109314592-109314611	None:intergenic	20.0%
!!	TATTATGAAAAGTCTTTCTT+GGG	-	Chr6:109316725-109316744	None:intergenic	20.0%
!!	TGAAAACAGTTTATGATAAA+GGG	+	Chr6:109313489-109313508	MsG0680035611.01.T01:intron	20.0%
!!	TTAAAGCAATTTAAAAACCA+AGG	-	Chr6:109315674-109315693	None:intergenic	20.0%
!!	TTATTATGAAAAGTCTTTCT+TGG	-	Chr6:109316726-109316745	None:intergenic	20.0%
!!	TTGAATCATTTGAGAAAATT+GGG	+	Chr6:109314462-109314481	MsG0680035611.01.T01:intron	20.0%
!!	TTTGAATCATTTGAGAAAAT+TGG	+	Chr6:109314461-109314480	MsG0680035611.01.T01:intron	20.0%
!!!	AAAACGATTTAACTTAACTT+TGG	-	Chr6:109313649-109313668	None:intergenic	20.0%
!!!	AAACGATTTAACTTAACTTT+GGG	-	Chr6:109313648-109313667	None:intergenic	20.0%
!!!	AGGTTATATATTGATTACTA+CGG	+	Chr6:109315127-109315146	MsG0680035611.01.T01:intron	20.0%
!!!	ATTTTATCAGTGAATATGAT+TGG	+	Chr6:109313978-109313997	MsG0680035611.01.T01:intron	20.0%
!!!	GTAGTTTTTATAAGCTATAT+TGG	+	Chr6:109313683-109313702	MsG0680035611.01.T01:intron	20.0%
!!!	TATGCTTTTTTTTGTCTAAT+GGG	+	Chr6:109314209-109314228	MsG0680035611.01.T01:intron	20.0%
!!!	TTTTCTTTTTGTTTTTTCCT+CGG	+	Chr6:109314141-109314160	MsG0680035611.01.T01:intron	20.0%
!!!	TTTTTCAATATTTTGTTTCG+TGG	+	Chr6:109314656-109314675	MsG0680035611.01.T01:intron	20.0%
!	AAAACCAAAATAAAGGATTG+TGG	-	Chr6:109314371-109314390	None:intergenic	25.0%
!	AATTTAGACTAAGGGTTATT+TGG	-	Chr6:109313855-109313874	None:intergenic	25.0%
!	ACATATTACTATTGCTTCAA+GGG	-	Chr6:109314328-109314347	None:intergenic	25.0%
!	ATAGAGCAATAAATCGTAAA+AGG	-	Chr6:109313082-109313101	None:intergenic	25.0%
!	GAAATTTGTGATGTAATAGT+AGG	+	Chr6:109314252-109314271	MsG0680035611.01.T01:intron	25.0%
!	GATTGATATGGTTAATTACT+TGG	+	Chr6:109313298-109313317	MsG0680035611.01.T01:intron	25.0%
!	GTTTATTTGCTTAATTGGTT+GGG	+	Chr6:109316804-109316823	MsG0680035611.01.T01:three_prime_UTR	25.0%
!	TAAATTAAGCTGCAAATAAG+TGG	-	Chr6:109313378-109313397	None:intergenic	25.0%
!	TAAATTGCTGTGTAACTATA+AGG	+	Chr6:109313869-109313888	MsG0680035611.01.T01:intron	25.0%
!	TAGAGCAATAAATCGTAAAA+GGG	-	Chr6:109313081-109313100	None:intergenic	25.0%
!	TATTTAGTGTATGTTTGGTT+TGG	-	Chr6:109315899-109315918	None:intergenic	25.0%
!	TGCAATAATGATGTTGTATT+TGG	+	Chr6:109314773-109314792	MsG0680035611.01.T01:intron	25.0%
!	TGTTTATTTGCTTAATTGGT+TGG	+	Chr6:109316803-109316822	MsG0680035611.01.T01:three_prime_UTR	25.0%
!	TTGTGAATATGTTTACTTCA+AGG	+	Chr6:109315046-109315065	MsG0680035611.01.T01:exon	25.0%
!!	AGATTTTATGAACATCTAAG+GGG	+	Chr6:109314546-109314565	MsG0680035611.01.T01:intron	25.0%
!!	ATACTTGACATTTTTATGCT+TGG	+	Chr6:109313937-109313956	MsG0680035611.01.T01:intron	25.0%
!!	CAGATTTTATGAACATCTAA+GGG	+	Chr6:109314545-109314564	MsG0680035611.01.T01:intron	25.0%
!!	TGTGAGAAAACAATTTTTCA+AGG	-	Chr6:109315945-109315964	None:intergenic	25.0%
!!!	ACAATCCTTTATTTTGGTTT+TGG	+	Chr6:109314370-109314389	MsG0680035611.01.T01:intron	25.0%
!!!	AGTAACTTTTGGAAATTGTT+TGG	-	Chr6:109316222-109316241	None:intergenic	25.0%
!!!	CAATCCTTTATTTTGGTTTT+GGG	+	Chr6:109314371-109314390	MsG0680035611.01.T01:intron	25.0%
!!!	CTATGCTTTTTTTTGTCTAA+TGG	+	Chr6:109314208-109314227	MsG0680035611.01.T01:intron	25.0%
!!!	GATTCTATTTTTCTCAGTTT+TGG	+	Chr6:109316523-109316542	MsG0680035611.01.T01:exon	25.0%
!!!	GTTTCTGTTGTTTTTATGTT+TGG	+	Chr6:109314607-109314626	MsG0680035611.01.T01:intron	25.0%
!!!	TCTTTCTAAACCCTATTTTT+TGG	+	Chr6:109313157-109313176	MsG0680035611.01.T01:intron	25.0%
!!!	TGCTTATTTTCACATTAGTT+TGG	-	Chr6:109316278-109316297	None:intergenic	25.0%
	AACAAAAACTCACGATTACA+TGG	+	Chr6:109315797-109315816	MsG0680035611.01.T01:intron	30.0%
	ATAGTTTACCTTCATGATCT+TGG	-	Chr6:109316191-109316210	None:intergenic	30.0%
	CACATAGCAAAAAAGTCATT+TGG	-	Chr6:109316668-109316687	None:intergenic	30.0%
	CACATATTACTATTGCTTCA+AGG	-	Chr6:109314329-109314348	None:intergenic	30.0%
	CATCGTTGTACCAAAAAATA+GGG	-	Chr6:109313170-109313189	None:intergenic	30.0%
	CTAATGAACCTTAAACTTGT+AGG	+	Chr6:109315997-109316016	MsG0680035611.01.T01:intron	30.0%
	CTGTAAAACTGAAGTTAATC+AGG	+	Chr6:109315725-109315744	MsG0680035611.01.T01:intron	30.0%
	GACAGAATCGTAATAAAAGA+TGG	-	Chr6:109315565-109315584	None:intergenic	30.0%
	GATTACATCCTACAAGTTTA+AGG	-	Chr6:109316008-109316027	None:intergenic	30.0%
	GTAACCTAACATGAATCTTA+GGG	+	Chr6:109313333-109313352	MsG0680035611.01.T01:intron	30.0%
	TACACAGCAATTTAGACTAA+GGG	-	Chr6:109313863-109313882	None:intergenic	30.0%
	TCATCGTTGTACCAAAAAAT+AGG	-	Chr6:109313171-109313190	None:intergenic	30.0%
	TGATAAAATACCACGATTAG+AGG	-	Chr6:109313967-109313986	None:intergenic	30.0%
	TGTAACCTAACATGAATCTT+AGG	+	Chr6:109313332-109313351	MsG0680035611.01.T01:intron	30.0%
	TTACACAGCAATTTAGACTA+AGG	-	Chr6:109313864-109313883	None:intergenic	30.0%
	TTAGAAAGAATAACTGGCAA+AGG	-	Chr6:109315537-109315556	None:intergenic	30.0%
	TTATACACAAGTGCTTATCA+TGG	+	Chr6:109313579-109313598	MsG0680035611.01.T01:intron	30.0%
	TTCTCCCAAAACCAAAATAA+AGG	-	Chr6:109314378-109314397	None:intergenic	30.0%
!	ATCCTGACATGTTGAATTTT+AGG	+	Chr6:109314077-109314096	MsG0680035611.01.T01:intron	30.0%
!	ATGTGATATAACTTGTGTTG+CGG	+	Chr6:109316752-109316771	MsG0680035611.01.T01:three_prime_UTR	30.0%
!	GCAGATTTTATGAACATCTA+AGG	+	Chr6:109314544-109314563	MsG0680035611.01.T01:intron	30.0%
!	TCTGTGTATATAGGTGTTTT+TGG	+	Chr6:109316391-109316410	MsG0680035611.01.T01:intron	30.0%
!	TCTTGTGTTTCTGTGTATAT+AGG	+	Chr6:109316382-109316401	MsG0680035611.01.T01:intron	30.0%
!!	ACTTCCACAATCCTTTATTT+TGG	+	Chr6:109314364-109314383	MsG0680035611.01.T01:intron	30.0%
!!	CAGTATTGTTTTTCTCCTTT+GGG	-	Chr6:109316418-109316437	None:intergenic	30.0%
!!	TCAGTATTGTTTTTCTCCTT+TGG	-	Chr6:109316419-109316438	None:intergenic	30.0%
!!!	CAAATGACTTTTTTGCTATG+TGG	+	Chr6:109316666-109316685	MsG0680035611.01.T01:three_prime_UTR	30.0%
!!!	GATAAAGGCTCTGTTTTTAT+TGG	+	Chr6:109313433-109313452	MsG0680035611.01.T01:intron	30.0%
!!!	TGTTTTCAATTTGTTGTTGC+AGG	+	Chr6:109315210-109315229	MsG0680035611.01.T01:intron	30.0%
!!!	TTCAAGCTTTGAGTAACTTT+TGG	-	Chr6:109316233-109316252	None:intergenic	30.0%
!!!	TTTTGTTGCACTGATTGATA+TGG	+	Chr6:109313286-109313305	MsG0680035611.01.T01:intron	30.0%
	AACAGACCTGTAATGATTTG+CGG	+	Chr6:109314513-109314532	MsG0680035611.01.T01:intron	35.0%
	AACTTAACTTTGGGTCTGTT+TGG	-	Chr6:109313639-109313658	None:intergenic	35.0%
	AAGAAAATCAGCAAGGACAA+GGG	+	Chr6:109315069-109315088	MsG0680035611.01.T01:CDS	35.0%
	AGCATAAACATCAACACACA+AGG	-	Chr6:109314044-109314063	None:intergenic	35.0%
	AGCCTAAAATTCAACATGTC+AGG	-	Chr6:109314082-109314101	None:intergenic	35.0%
	ATGATGTTGTATTTGGACGT+CGG	+	Chr6:109314780-109314799	MsG0680035611.01.T01:intron	35.0%
	CAACATCATTATTGCAGTAG+TGG	-	Chr6:109314769-109314788	None:intergenic	35.0%
	CAATAAAAGCCTAAGAAGCA+AGG	-	Chr6:109314954-109314973	None:intergenic	35.0%
	CGAGTAGAAGACAAAGAAAT+TGG	-	Chr6:109315606-109315625	None:intergenic	35.0%
	CGTACTAGATACAGAATTGA+TGG	+	Chr6:109316163-109316182	MsG0680035611.01.T01:CDS	35.0%
	CTGGTACTCAATATTAGGTT+TGG	+	Chr6:109314865-109314884	MsG0680035611.01.T01:intron	35.0%
	CTTAAACAATGCTTTAACCG+AGG	-	Chr6:109314161-109314180	None:intergenic	35.0%
	GATAAAGAGAAGCTACAAAG+TGG	-	Chr6:109315828-109315847	None:intergenic	35.0%
	GCATTGTTTAAGTAGAAGCT+TGG	+	Chr6:109314169-109314188	MsG0680035611.01.T01:intron	35.0%
	GTCTAAGCATGTGTTTGATT+TGG	+	Chr6:109315753-109315772	MsG0680035611.01.T01:intron	35.0%
	GTGCAGTTAGAAAGAATAAC+TGG	-	Chr6:109315543-109315562	None:intergenic	35.0%
	GTGTAAGGATGTGTTCTTTA+TGG	+	Chr6:109315304-109315323	MsG0680035611.01.T01:intron	35.0%
	TAATAGTAGGCTTCACTATC+TGG	+	Chr6:109314265-109314284	MsG0680035611.01.T01:intron	35.0%
	TACATCAATTCTGCAGTGTA+AGG	+	Chr6:109315289-109315308	MsG0680035611.01.T01:intron	35.0%
	TAGGATTTGTGAGACAGTTT+AGG	+	Chr6:109313458-109313477	MsG0680035611.01.T01:intron	35.0%
	TCTGTCTGGTACTCAATATT+AGG	+	Chr6:109314860-109314879	MsG0680035611.01.T01:intron	35.0%
	TGGCTGTAGATAACAGAAAA+CGG	-	Chr6:109315374-109315393	None:intergenic	35.0%
	TTCAAGGAAGAAAATCAGCA+AGG	+	Chr6:109315062-109315081	MsG0680035611.01.T01:CDS	35.0%
!	AAACGTTTTCTGCAGTTTAC+AGG	+	Chr6:109316450-109316469	MsG0680035611.01.T01:CDS	35.0%
!	ACTATTGTTGTTGCTGTGAT+TGG	+	Chr6:109315150-109315169	MsG0680035611.01.T01:intron	35.0%
!	ATTCTGTTTTGCAATCTCCT+TGG	+	Chr6:109315654-109315673	MsG0680035611.01.T01:intron	35.0%
!	TGCTGCTTATAGATCTTGTT+TGG	+	Chr6:109314897-109314916	MsG0680035611.01.T01:intron	35.0%
!!!	ACACTTTTAGTTCTTCTGTC+TGG	+	Chr6:109314846-109314865	MsG0680035611.01.T01:intron	35.0%
	AAATTCACGTCAAGCTCGTT+AGG	+	Chr6:109315465-109315484	MsG0680035611.01.T01:CDS	40.0%
	AACTGAAGTTAATCAGGCTG+CGG	+	Chr6:109315731-109315750	MsG0680035611.01.T01:intron	40.0%
	AATTCACGTCAAGCTCGTTA+GGG	+	Chr6:109315466-109315485	MsG0680035611.01.T01:CDS	40.0%
	ACTGAATTTGAGGAGTCAGT+TGG	+	Chr6:109315102-109315121	MsG0680035611.01.T01:CDS	40.0%
	CAGTTTACAGGAAACTCTCA+GGG	+	Chr6:109316462-109316481	MsG0680035611.01.T01:CDS	40.0%
	GAAGAAAATCAGCAAGGACA+AGG	+	Chr6:109315068-109315087	MsG0680035611.01.T01:CDS	40.0%
	GAGCTTGAGAAGAAATTCAG+CGG	+	Chr6:109315488-109315507	MsG0680035611.01.T01:CDS	40.0%
	GGTTTCCAGAAACATCAACT+TGG	-	Chr6:109315394-109315413	None:intergenic	40.0%
	GTGGTTTATCCAATCCAAAC+AGG	-	Chr6:109313359-109313378	None:intergenic	40.0%
	GTTGAAGCTCTCTATGATTC+TGG	+	Chr6:109316596-109316615	MsG0680035611.01.T01:three_prime_UTR	40.0%
	TCATACCCGCAAATCATTAC+AGG	-	Chr6:109314522-109314541	None:intergenic	40.0%
	TGAGAAGAAATTCAGCGGAA+AGG	+	Chr6:109315493-109315512	MsG0680035611.01.T01:CDS	40.0%
	TGATGTTGTATTTGGACGTC+GGG	+	Chr6:109314781-109314800	MsG0680035611.01.T01:intron	40.0%
	TGTTACCTGCTGAGATTGTT+GGG	+	Chr6:109316137-109316156	MsG0680035611.01.T01:CDS	40.0%
	TGTTTGGTACTAATACTGCG+TGG	+	Chr6:109314913-109314932	MsG0680035611.01.T01:intron	40.0%
!	ACAGACCTGTAATGATTTGC+GGG	+	Chr6:109314514-109314533	MsG0680035611.01.T01:intron	40.0%
!	ACTGACTCCTCAAATTCAGT+AGG	-	Chr6:109315102-109315121	None:intergenic	40.0%
!	TGATGATGACCTTGCTTCTT+AGG	+	Chr6:109314942-109314961	MsG0680035611.01.T01:intron	40.0%
!	TGATGGATCCAAGATCATGA+AGG	+	Chr6:109316180-109316199	MsG0680035611.01.T01:CDS	40.0%
!!	TACAGCCAAGTTGATGTTTC+TGG	+	Chr6:109315386-109315405	MsG0680035611.01.T01:intron	40.0%
!!	TCAGATCACTTTTGAGCTCA+TGG	-	Chr6:109315261-109315280	None:intergenic	40.0%
!!!	ATAGGTGTTTTTGGACCCAA+AGG	+	Chr6:109316400-109316419	MsG0680035611.01.T01:intron	40.0%
!!!	GGCTCTGTTTTTATTGGCAT+AGG	+	Chr6:109313439-109313458	MsG0680035611.01.T01:intron	40.0%
	AACCCCTTCCTCAATCTGTA+GGG	-	Chr6:109315440-109315459	None:intergenic	45.0%
	AGAATCTACGCCTCAGTAAC+AGG	-	Chr6:109316509-109316528	None:intergenic	45.0%
	AGCGAGGGGAACACAATTAT+AGG	-	Chr6:109314744-109314763	None:intergenic	45.0%
	ATCCCCTACAGATTGAGGAA+GGG	+	Chr6:109315434-109315453	MsG0680035611.01.T01:CDS	45.0%
	ATCTGCATCTTCTTCGGCTA+AGG	+	Chr6:109313042-109313061	MsG0680035611.01.T01:five_prime_UTR	45.0%
	ATCTTAGGGCCTGTTTGGAT+TGG	+	Chr6:109313347-109313366	MsG0680035611.01.T01:intron	45.0%
	ATGCCTTGTAATCATGCGAG+TGG	+	Chr6:109315860-109315879	MsG0680035611.01.T01:intron	45.0%
	ATGTAATCCTCATTGCCACC+AGG	+	Chr6:109316020-109316039	MsG0680035611.01.T01:CDS	45.0%
	ATTTGAGGAGTCAGTTGGAC+AGG	+	Chr6:109315107-109315126	MsG0680035611.01.T01:CDS	45.0%
	CAGGCCCTAAGATTCATGTT+AGG	-	Chr6:109313340-109313359	None:intergenic	45.0%
	CATGAATCTTAGGGCCTGTT+TGG	+	Chr6:109313342-109313361	MsG0680035611.01.T01:intron	45.0%
	GAATCTACGCCTCAGTAACA+GGG	-	Chr6:109316508-109316527	None:intergenic	45.0%
	GCAGTTTACAGGAAACTCTC+AGG	+	Chr6:109316461-109316480	MsG0680035611.01.T01:CDS	45.0%
	GTGTTACCTGCTGAGATTGT+TGG	+	Chr6:109316136-109316155	MsG0680035611.01.T01:CDS	45.0%
	GTTTGAGTACCCTGTTACTG+AGG	+	Chr6:109316496-109316515	MsG0680035611.01.T01:CDS	45.0%
	TATCCCCTACAGATTGAGGA+AGG	+	Chr6:109315433-109315452	MsG0680035611.01.T01:CDS	45.0%
	TATGGATAACCACAGCCTTG+CGG	-	Chr6:109315415-109315434	None:intergenic	45.0%
	TCAAGGGAACGAGTCTGAAT+GGG	-	Chr6:109314312-109314331	None:intergenic	45.0%
	TCCATATCCCCTACAGATTG+AGG	+	Chr6:109315429-109315448	MsG0680035611.01.T01:CDS	45.0%
	TCCTCAATCTGTAGGGGATA+TGG	-	Chr6:109315433-109315452	None:intergenic	45.0%
	TTCAAGGGAACGAGTCTGAA+TGG	-	Chr6:109314313-109314332	None:intergenic	45.0%
	TTGCCACTCGCATGATTACA+AGG	-	Chr6:109315866-109315885	None:intergenic	45.0%
!	CGAGCTTGACGTGAATTTTG+CGG	-	Chr6:109315463-109315482	None:intergenic	45.0%
!!	ATTGCAGTAGTGGATAGCGA+GGG	-	Chr6:109314759-109314778	None:intergenic	45.0%
!!	GTTGCAGGCTTTGTTTGATC+TGG	+	Chr6:109315225-109315244	MsG0680035611.01.T01:intron	45.0%
!!	TATTGCAGTAGTGGATAGCG+AGG	-	Chr6:109314760-109314779	None:intergenic	45.0%
!!	TGATGTTTCTGGAAACCGCA+AGG	+	Chr6:109315397-109315416	MsG0680035611.01.T01:CDS	45.0%
	ACCCCTTCCTCAATCTGTAG+GGG	-	Chr6:109315439-109315458	None:intergenic	50.0%
	AGCCGAAGAAGATGCAGATG+CGG	-	Chr6:109313041-109313060	None:intergenic	50.0%
	AGCCGCATCTGCATCTTCTT+CGG	+	Chr6:109313036-109313055	MsG0680035611.01.T01:five_prime_UTR	50.0%
	ATCGTCAGGCCACCAAAGAA+AGG	+	Chr6:109316046-109316065	MsG0680035611.01.T01:CDS	50.0%
	CGCTGAGCCTACTGAATTTG+AGG	+	Chr6:109315092-109315111	MsG0680035611.01.T01:CDS	50.0%
	CGTTTCCCAACAATCTCAGC+AGG	-	Chr6:109316145-109316164	None:intergenic	50.0%
	GAACCCCTTCCTCAATCTGT+AGG	-	Chr6:109315441-109315460	None:intergenic	50.0%
	GCTTCACTATCTGGTCGATG+CGG	+	Chr6:109314274-109314293	MsG0680035611.01.T01:intron	50.0%
	GCTTGGATGTCCTCTAATCG+TGG	+	Chr6:109313954-109313973	MsG0680035611.01.T01:intron	50.0%
	TCCCCTACAGATTGAGGAAG+GGG	+	Chr6:109315435-109315454	MsG0680035611.01.T01:CDS	50.0%
!!	TTGCAGTAGTGGATAGCGAG+GGG	-	Chr6:109314758-109314777	None:intergenic	50.0%
	CGATTCTCCTGGTGGCAATG+AGG	-	Chr6:109316030-109316049	None:intergenic	55.0%
	CGTGGACAGCAGTGAGTGTA+CGG	-	Chr6:109316096-109316115	None:intergenic	55.0%
	TACACTCACTGCTGTCCACG+AGG	+	Chr6:109316096-109316115	MsG0680035611.01.T01:CDS	55.0%
	TGAGCAGCGGAGCCTTTCTT+TGG	-	Chr6:109316061-109316080	None:intergenic	55.0%
	TTGCCACCAGGAGAATCGTC+AGG	+	Chr6:109316032-109316051	MsG0680035611.01.T01:CDS	55.0%
!	TTCTGGAAACCGCAAGGCTG+TGG	+	Chr6:109315403-109315422	MsG0680035611.01.T01:CDS	55.0%
	GCAGCGGAGCCTTTCTTTGG+TGG	-	Chr6:109316058-109316077	None:intergenic	60.0%
	TGGCCTGACGATTCTCCTGG+TGG	-	Chr6:109316038-109316057	None:intergenic	60.0%
	TGGTGGCCTGACGATTCTCC+TGG	-	Chr6:109316041-109316060	None:intergenic	60.0%
	TGTCCACGAGGCAATGCTCG+AGG	+	Chr6:109316108-109316127	MsG0680035611.01.T01:CDS	60.0%
!	CATCCTCGAGCATTGCCTCG+TGG	-	Chr6:109316114-109316133	None:intergenic	60.0%
	GCAGTGAGTGTACGGCTGCG+TGG	-	Chr6:109316088-109316107	None:intergenic	65.0%
	GCTGCGTGGACGCTGAGCAG+CGG	-	Chr6:109316074-109316093	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	109313014	109316829	109313014	ID=MsG0680035611.01;Name=MsG0680035611.01
Chr6	mRNA	109313014	109316829	109313014	ID=MsG0680035611.01.T01;Parent=MsG0680035611.01;Name=MsG0680035611.01.T01;_AED=0.38;_eAED=0.38;_QI=65\|1\|1\|1\|0.8\|0.66\|6\|306\|191
Chr6	exon	109313014	109313063	109313014	ID=MsG0680035611.01.T01:exon:8541;Parent=MsG0680035611.01.T01
Chr6	exon	109315039	109315128	109315039	ID=MsG0680035611.01.T01:exon:8542;Parent=MsG0680035611.01.T01
Chr6	exon	109315232	109315305	109315232	ID=MsG0680035611.01.T01:exon:8543;Parent=MsG0680035611.01.T01
Chr6	exon	109315391	109315514	109315391	ID=MsG0680035611.01.T01:exon:8544;Parent=MsG0680035611.01.T01
Chr6	exon	109316019	109316201	109316019	ID=MsG0680035611.01.T01:exon:8545;Parent=MsG0680035611.01.T01
Chr6	exon	109316404	109316829	109316404	ID=MsG0680035611.01.T01:exon:8546;Parent=MsG0680035611.01.T01
Chr6	five_prime_UTR	109313014	109313063	109313014	ID=MsG0680035611.01.T01:five_prime_utr;Parent=MsG0680035611.01.T01
Chr6	five_prime_UTR	109315039	109315053	109315039	ID=MsG0680035611.01.T01:five_prime_utr;Parent=MsG0680035611.01.T01
Chr6	CDS	109315054	109315128	109315054	ID=MsG0680035611.01.T01:cds;Parent=MsG0680035611.01.T01
Chr6	CDS	109315232	109315305	109315232	ID=MsG0680035611.01.T01:cds;Parent=MsG0680035611.01.T01
Chr6	CDS	109315391	109315514	109315391	ID=MsG0680035611.01.T01:cds;Parent=MsG0680035611.01.T01
Chr6	CDS	109316019	109316201	109316019	ID=MsG0680035611.01.T01:cds;Parent=MsG0680035611.01.T01
Chr6	CDS	109316404	109316523	109316404	ID=MsG0680035611.01.T01:cds;Parent=MsG0680035611.01.T01
Chr6	three_prime_UTR	109316524	109316829	109316524	ID=MsG0680035611.01.T01:three_prime_utr;Parent=MsG0680035611.01.T01

Gene Sequence

>MsG0680035611.01.T01

ATGTTTACTTCAAGGAAGAAAATCAGCAAGGACAAGGGCGCTGAGCCTACTGAATTTGAGGAGTCAGTTGGACAGGCTTTGTTTGATCTGGAAAACACTAACCATGAGCTCAAAAGTGATCTGAAAGATTTATACATCAATTCTGCAGTCCAAGTTGATGTTTCTGGAAACCGCAAGGCTGTGGTTATCCATATCCCCTACAGATTGAGGAAGGGGTTCCGCAAAATTCACGTCAAGCTCGTTAGGGAGCTTGAGAAGAAATTCAGCGGAAAGGATGTAATCCTCATTGCCACCAGGAGAATCGTCAGGCCACCAAAGAAAGGCTCCGCTGCTCAGCGTCCACGCAGCCGTACACTCACTGCTGTCCACGAGGCAATGCTCGAGGATGTCGTGTTACCTGCTGAGATTGTTGGGAAACGTACTAGATACAGAATTGATGGATCCAAGATCATGAAGGTGTTTTTGGACCCAAAGGAGAAAAACAATACTGAATACAAGCTCGAAACGTTTTCTGCAGTTTACAGGAAACTCTCAGGGAAAGATGTTGTGTTTGAGTACCCTGTTACTGAGGCGTAG

Protein sequence

>MsG0680035611.01.T01

MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSDLKDLYINSAVQVDVSGNRKAVVIHIPYRLRKGFRKIHVKLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRTRYRIDGSKIMKVFLDPKEKNNTEYKLETFSAVYRKLSGKDVVFEYPVTEA*