Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016653.01.T01 | XP_003602368.1 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 2.69E-70 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016653.01.T01 | P52855 | 70.909 | 110 | 31 | 1 | 1 | 110 | 1 | 109 | 3.80E-29 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016653.01.T01 | G7J8Y6 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 1.28e-70 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000096.01 | MsG0380016653.01 | 0.815719 | 8.005047e-52 | 5.561933e-49 |
| MsG0180000118.01 | MsG0380016653.01 | 0.818900 | 1.539600e-52 | 1.167324e-49 |
| MsG0180001169.01 | MsG0380016653.01 | 0.846261 | 2.427771e-59 | 4.154498e-56 |
| MsG0180001829.01 | MsG0380016653.01 | 0.863979 | 1.691060e-64 | 5.224114e-61 |
| MsG0180003585.01 | MsG0380016653.01 | 0.810488 | 1.124208e-50 | 6.785554e-48 |
| MsG0180003897.01 | MsG0380016653.01 | 0.891019 | 5.817316e-74 | 5.013401e-70 |
| MsG0180004064.01 | MsG0380016653.01 | 0.829485 | 5.014980e-55 | 5.139528e-52 |
| MsG0180004503.01 | MsG0380016653.01 | 0.851393 | 9.139371e-61 | 1.847263e-57 |
| MsG0380015446.01 | MsG0380016653.01 | 0.821632 | 3.641824e-53 | 2.978875e-50 |
| MsG0380015766.01 | MsG0380016653.01 | 0.873907 | 1.021716e-67 | 4.508747e-64 |
| MsG0380015857.01 | MsG0380016653.01 | 0.849788 | 2.581739e-60 | 4.950254e-57 |
| MsG0380016201.01 | MsG0380016653.01 | 0.819815 | 9.528563e-53 | 7.410222e-50 |
| MsG0380016607.01 | MsG0380016653.01 | 0.809103 | 2.232642e-50 | 1.299197e-47 |
| MsG0380016653.01 | MsG0380016732.01 | 0.890313 | 1.103346e-73 | 9.230115e-70 |
| MsG0380016653.01 | MsG0380016744.01 | 0.846861 | 1.664170e-59 | 2.903655e-56 |
| MsG0380016653.01 | MsG0380016760.01 | 0.823092 | 1.668650e-53 | 1.422854e-50 |
| MsG0380016653.01 | MsG0380016805.01 | 0.844099 | 9.321246e-59 | 1.489033e-55 |
| MsG0380016653.01 | MsG0480020796.01 | 0.808963 | 2.391948e-50 | 1.386622e-47 |
| MsG0380016653.01 | MsG0480021279.01 | 0.864761 | 9.636935e-65 | 3.060283e-61 |
| MsG0380016653.01 | MsG0480021417.01 | 0.826728 | 2.313767e-54 | 2.187836e-51 |
| MsG0380016653.01 | MsG0480022006.01 | 0.874586 | 6.016565e-68 | 2.723096e-64 |
| MsG0380016653.01 | MsG0480022955.01 | 0.856073 | 4.115921e-62 | 9.705201e-59 |
| MsG0380016653.01 | MsG0480023380.01 | 0.851771 | 7.144017e-61 | 1.461400e-57 |
| MsG0380016653.01 | MsG0480023774.01 | 0.820405 | 6.978838e-53 | 5.517200e-50 |
| MsG0380016653.01 | MsG0480023931.01 | 0.862514 | 4.803722e-64 | 1.410597e-60 |
| MsG0380016653.01 | MsG0480023996.01 | 0.802721 | 4.904244e-49 | 2.419827e-46 |
| MsG0380016653.01 | MsG0580024540.01 | 0.806625 | 7.509640e-50 | 4.095344e-47 |
| MsG0380016653.01 | MsG0580024738.01 | 0.870399 | 1.502443e-66 | 5.836216e-63 |
| MsG0380016653.01 | MsG0680035611.01 | 0.843612 | 1.258961e-58 | 1.980782e-55 |
| MsG0380016653.01 | MsG0780039937.01 | 0.816733 | 4.750197e-52 | 3.393106e-49 |
| MsG0380016653.01 | MsG0780040877.01 | 0.823857 | 1.104852e-53 | 9.627183e-51 |
| MsG0380016653.01 | MsG0780041240.01 | 0.801512 | 8.694562e-49 | 4.159950e-46 |
| MsG0380016653.01 | MsG0780041311.01 | 0.869481 | 2.997625e-66 | 1.126944e-62 |
| MsG0380016653.01 | MsG0780041522.01 | 0.809872 | 1.526198e-50 | 9.064412e-48 |
| MsG0380016653.01 | MsG0880041941.01 | 0.813333 | 2.698729e-51 | 1.757369e-48 |
| MsG0380016653.01 | MsG0880042517.01 | 0.814638 | 1.391248e-51 | 9.385934e-49 |
| MsG0380016653.01 | MsG0880044204.01 | 0.828525 | 8.567643e-55 | 8.537559e-52 |
| MsG0380016653.01 | MsG0880046486.01 | 0.868814 | 4.936783e-66 | 1.810373e-62 |
| MsG0280006629.01 | MsG0380016653.01 | 0.834234 | 3.372034e-56 | 3.977116e-53 |
| MsG0280006747.01 | MsG0380016653.01 | 0.863470 | 2.433464e-64 | 7.384207e-61 |
| MsG0280007055.01 | MsG0380016653.01 | 0.834926 | 2.258867e-56 | 2.720258e-53 |
| MsG0280007084.01 | MsG0380016653.01 | 0.865841 | 4.405431e-65 | 1.453964e-61 |
| MsG0280007606.01 | MsG0380016653.01 | 0.801381 | 9.248779e-49 | 4.410522e-46 |
| MsG0280007995.01 | MsG0380016653.01 | 0.808583 | 2.884466e-50 | 1.655459e-47 |
| MsG0280010203.01 | MsG0380016653.01 | 0.846336 | 2.315348e-59 | 3.971832e-56 |
| MsG0280010232.01 | MsG0380016653.01 | 0.810789 | 9.677901e-51 | 5.888774e-48 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016653.01.T01 | MTR_3g092600 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 3.25e-74 | 215 |
| MsG0380016653.01.T01 | MTR_2g066750 | 98.182 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 1.11e-73 | 214 |
| MsG0380016653.01.T01 | MTR_8g024350 | 64.545 | 110 | 37 | 2 | 1 | 110 | 1 | 108 | 1.48e-33 | 112 |
| MsG0380016653.01.T01 | MTR_7g118060 | 62.712 | 59 | 22 | 0 | 1 | 59 | 1 | 59 | 1.04e-20 | 80.5 |
| MsG0380016653.01.T01 | MTR_7g005740 | 66.129 | 62 | 2 | 1 | 1 | 62 | 1 | 43 | 1.57e-19 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016653.01.T01 | AT5G24510 | 57.391 | 115 | 40 | 4 | 1 | 110 | 1 | 111 | 4.31e-36 | 119 |
| MsG0380016653.01.T01 | AT5G47700 | 57.658 | 111 | 45 | 1 | 2 | 110 | 3 | 113 | 8.29e-29 | 100 |
| MsG0380016653.01.T01 | AT5G47700 | 57.658 | 111 | 45 | 1 | 2 | 110 | 3 | 113 | 8.29e-29 | 100 |
| MsG0380016653.01.T01 | AT1G01100 | 60.185 | 108 | 42 | 1 | 4 | 110 | 5 | 112 | 4.43e-28 | 99.0 |
| MsG0380016653.01.T01 | AT1G01100 | 60.185 | 108 | 42 | 1 | 4 | 110 | 5 | 112 | 4.43e-28 | 99.0 |
| MsG0380016653.01.T01 | AT1G01100 | 60.185 | 108 | 42 | 1 | 4 | 110 | 5 | 112 | 4.43e-28 | 99.0 |
| MsG0380016653.01.T01 | AT1G01100 | 50.459 | 109 | 39 | 1 | 2 | 110 | 3 | 96 | 2.22e-27 | 96.7 |
| MsG0380016653.01.T01 | AT4G00810 | 54.955 | 111 | 48 | 1 | 2 | 110 | 3 | 113 | 2.98e-27 | 97.1 |
| MsG0380016653.01.T01 | AT4G00810 | 54.955 | 111 | 48 | 1 | 2 | 110 | 3 | 113 | 2.98e-27 | 97.1 |
Find 44 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATAAAACAAAACAAGTTT+TGG | 0.254235 | 3:+86165418 | None:intergenic |
| TTCCCGCATCAGATGTAAAA+TGG | 0.280734 | 3:+86165282 | None:intergenic |
| CAAAATGAGTTCCGGCGAAT+TGG | 0.294649 | 3:-86166834 | MsG0380016653.01.T01:exon |
| GTCATCGTCACTTTCTTCCT+TGG | 0.329724 | 3:+86165523 | None:intergenic |
| ACGTCACCGTTGAATCTTAC+TGG | 0.348075 | 3:-86166628 | MsG0380016653.01.T01:CDS |
| AAAATGAGTTCCGGCGAATT+GGG | 0.368280 | 3:-86166833 | MsG0380016653.01.T01:CDS |
| TAGTTTGTTGTAGCCAGATT+AGG | 0.371827 | 3:-86165465 | MsG0380016653.01.T01:three_prime_UTR |
| CCTTGAAAGGAGTCCTAATC+TGG | 0.373967 | 3:+86165452 | None:intergenic |
| CCAGATTAGGACTCCTTTCA+AGG | 0.391998 | 3:-86165452 | MsG0380016653.01.T01:three_prime_UTR |
| TCTGAGCAAGCTTAGCGAAT+AGG | 0.392998 | 3:+86166600 | None:intergenic |
| GATAATAGACTTACGGTGAT+TGG | 0.399296 | 3:+86166770 | None:intergenic |
| GCCGTATCTGCACCCGCTGC+TGG | 0.401410 | 3:-86166521 | MsG0380016653.01.T01:CDS |
| TCTGCACCCGCTGCTGGTGG+TGG | 0.439771 | 3:-86166515 | MsG0380016653.01.T01:CDS |
| ATTGTTCTGCCACACAAACT+AGG | 0.448236 | 3:+86166866 | None:intergenic |
| GCGGCTCCACCACCAGCAGC+GGG | 0.451994 | 3:+86166509 | None:intergenic |
| ATAATAGACTTACGGTGATT+GGG | 0.452174 | 3:+86166771 | None:intergenic |
| GAAGATCGGTACTTTGTTGA+AGG | 0.461021 | 3:-86166657 | MsG0380016653.01.T01:CDS |
| ACCTGCCGCCGTTGAAAAGA+AGG | 0.476631 | 3:-86166474 | MsG0380016653.01.T01:intron |
| TGCGGCTCCACCACCAGCAG+CGG | 0.489051 | 3:+86166508 | None:intergenic |
| TTGAACTCCGGCGCTGTTGG+TGG | 0.510539 | 3:-86166554 | MsG0380016653.01.T01:CDS |
| ACAATTCACAAAATGAGTTC+CGG | 0.522809 | 3:-86166842 | MsG0380016653.01.T01:exon |
| GGAAGAAAGTGACGATGACA+TGG | 0.523361 | 3:-86165519 | MsG0380016653.01.T01:CDS |
| AGCGGCACCACCAACAGCGC+CGG | 0.527844 | 3:+86166547 | None:intergenic |
| ACCAGCAGCGGGTGCAGATA+CGG | 0.530473 | 3:+86166520 | None:intergenic |
| GGATTCAGCCACTCCTTGAA+AGG | 0.532068 | 3:+86165439 | None:intergenic |
| TCCATCGTCGTGGAGGATCA+AGG | 0.532980 | 3:+86166796 | None:intergenic |
| GCAAGCTTAGCGAATAGGCT+TGG | 0.542190 | 3:+86166605 | None:intergenic |
| TTTGTTTAGGCGGAGAAGAT+CGG | 0.543289 | 3:-86166671 | MsG0380016653.01.T01:intron |
| GGCAGGTTCGGCAGCTGCTG+CGG | 0.548908 | 3:+86166490 | None:intergenic |
| TTGTTCTGCCACACAAACTA+GGG | 0.550348 | 3:+86166867 | None:intergenic |
| GTAAATGCAGCCCAATTCGC+CGG | 0.571217 | 3:+86166823 | None:intergenic |
| ACCTTGATCCTCCACGACGA+TGG | 0.573503 | 3:-86166797 | MsG0380016653.01.T01:CDS |
| TTAGGACTCCTTTCAAGGAG+TGG | 0.585485 | 3:-86165447 | MsG0380016653.01.T01:three_prime_UTR |
| TTCGTAAACCCTAGTTTGTG+TGG | 0.589308 | 3:-86166875 | MsG0380016653.01.T01:five_prime_UTR |
| AAAATCTTTCAAAATTAACC+TGG | 0.590654 | 3:+86165250 | None:intergenic |
| GTATCTGCACCCGCTGCTGG+TGG | 0.603091 | 3:-86166518 | MsG0380016653.01.T01:CDS |
| ATGCGGGAATATATCATACC+AGG | 0.604298 | 3:-86165268 | MsG0380016653.01.T01:three_prime_UTR |
| GCTTGGCCAGTAAGATTCAA+CGG | 0.629260 | 3:+86166622 | None:intergenic |
| TTGGGATTCCATCGTCGTGG+AGG | 0.650788 | 3:+86166789 | None:intergenic |
| GTGTTTGTAGGAGGAAGCCA+AGG | 0.654949 | 3:-86165540 | MsG0380016653.01.T01:intron |
| TGATTGGGATTCCATCGTCG+TGG | 0.662981 | 3:+86166786 | None:intergenic |
| GGGTGCAGATACGGCAACAG+CGG | 0.665524 | 3:+86166529 | None:intergenic |
| GAAGAAAGTGACGATGACAT+GGG | 0.678372 | 3:-86165518 | MsG0380016653.01.T01:CDS |
| ATCGTCGTGGAGGATCAAGG+TGG | 0.743990 | 3:+86166799 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATATGTTTTTATCTTA+AGG | + | Chr3:86165867-86165886 | None:intergenic | 10.0% |
| !! | AATTGTATTGAAATTAGAAA+CGG | - | Chr3:86165768-86165787 | MsG0380016653.01.T01:intron | 15.0% |
| !! | TATAAAAGATATAATTTCCT+CGG | - | Chr3:86165990-86166009 | MsG0380016653.01.T01:intron | 15.0% |
| !!! | CTCATTTTATTGTTAAATTT+TGG | - | Chr3:86166782-86166801 | MsG0380016653.01.T01:intron | 15.0% |
| !!! | TTATAAAACAAAACAAGTTT+TGG | + | Chr3:86166727-86166746 | None:intergenic | 15.0% |
| !!! | TTTTCATGCAAAATAATTTT+TGG | + | Chr3:86166061-86166080 | None:intergenic | 15.0% |
| !! | AAAGTAAAAAATGTGGATAT+AGG | + | Chr3:86166430-86166449 | None:intergenic | 20.0% |
| !! | AAGTAAAAAATGTGGATATA+GGG | + | Chr3:86166429-86166448 | None:intergenic | 20.0% |
| !! | ATTGTATTGAAATTAGAAAC+GGG | - | Chr3:86165769-86165788 | MsG0380016653.01.T01:intron | 20.0% |
| !!! | AATTGTTGTTTTTCTTCATT+GGG | - | Chr3:86166140-86166159 | MsG0380016653.01.T01:intron | 20.0% |
| !!! | ATATCCACATTTTTTACTTT+TGG | - | Chr3:86166430-86166449 | MsG0380016653.01.T01:intron | 20.0% |
| !!! | ATGAAAACATGTAGTTATTT+TGG | - | Chr3:86166098-86166117 | MsG0380016653.01.T01:intron | 20.0% |
| !!! | ATTTTTCTTTTGTTACTGTT+TGG | - | Chr3:86165441-86165460 | MsG0380016653.01.T01:three_prime_UTR | 20.0% |
| !!! | TAATTGTTGTTTTTCTTCAT+TGG | - | Chr3:86166139-86166158 | MsG0380016653.01.T01:intron | 20.0% |
| !!! | TATCCACATTTTTTACTTTT+GGG | - | Chr3:86166431-86166450 | MsG0380016653.01.T01:intron | 20.0% |
| !!! | TTTTTCTTTTGTTACTGTTT+GGG | - | Chr3:86165442-86165461 | MsG0380016653.01.T01:three_prime_UTR | 20.0% |
| ! | CGATTTGAAGATTATAGAAA+TGG | + | Chr3:86165409-86165428 | None:intergenic | 25.0% |
| ! | GACAACTCTGAATATAATTA+TGG | - | Chr3:86166190-86166209 | MsG0380016653.01.T01:intron | 25.0% |
| ! | TATAGAAATGGAATTGAAGA+GGG | + | Chr3:86165397-86165416 | None:intergenic | 25.0% |
| ! | TTAAATAAGCCAATCATAAC+TGG | - | Chr3:86166403-86166422 | MsG0380016653.01.T01:intron | 25.0% |
| ! | TTATAGAAATGGAATTGAAG+AGG | + | Chr3:86165398-86165417 | None:intergenic | 25.0% |
| !! | AAACAATACCTTCTTTTCAA+CGG | + | Chr3:86165679-86165698 | None:intergenic | 25.0% |
| !!! | ATAAAGTTAACTTGTTTTCC+TGG | - | Chr3:86166320-86166339 | MsG0380016653.01.T01:intron | 25.0% |
| !!! | TAAAGTTAACTTGTTTTCCT+GGG | - | Chr3:86166321-86166340 | MsG0380016653.01.T01:intron | 25.0% |
| AAAAGATATAATTTCCTCGG+AGG | - | Chr3:86165993-86166012 | MsG0380016653.01.T01:intron | 30.0% | |
| AAAGATATAATTTCCTCGGA+GGG | - | Chr3:86165994-86166013 | MsG0380016653.01.T01:intron | 30.0% | |
| AATGTAAGCTTATGCATAAG+TGG | + | Chr3:86166275-86166294 | None:intergenic | 30.0% | |
| ACAATTCACAAAATGAGTTC+CGG | - | Chr3:86165300-86165319 | MsG0380016653.01.T01:three_prime_UTR | 30.0% | |
| AGATGCAAGTTCTACAAAAT+AGG | + | Chr3:86165967-86165986 | None:intergenic | 30.0% | |
| ATAATAGACTTACGGTGATT+GGG | + | Chr3:86165374-86165393 | None:intergenic | 30.0% | |
| ATGTAAGCTTATGCATAAGT+GGG | + | Chr3:86166274-86166293 | None:intergenic | 30.0% | |
| CAGCAAATGACAGTATTTAT+CGG | + | Chr3:86166030-86166049 | None:intergenic | 30.0% | |
| TATTCAGAGTTGTCTTGAAA+AGG | + | Chr3:86166184-86166203 | None:intergenic | 30.0% | |
| TCACCCAAAAGTAAAAAATG+TGG | + | Chr3:86166437-86166456 | None:intergenic | 30.0% | |
| TGTAATGATGAGTTACTGAT+TGG | - | Chr3:86165739-86165758 | MsG0380016653.01.T01:intron | 30.0% | |
| TGTTAAATGAATGCTAGTTC+TGG | - | Chr3:86165816-86165835 | MsG0380016653.01.T01:intron | 30.0% | |
| TTTGTTTAGTGACACTGTTT+GGG | + | Chr3:86166376-86166395 | None:intergenic | 30.0% | |
| ! | ATTCCATTTTACATCTGATG+CGG | - | Chr3:86166857-86166876 | MsG0380016653.01.T01:five_prime_UTR | 30.0% |
| ! | ATTTTGTAGAACTTGCATCT+AGG | - | Chr3:86165967-86165986 | MsG0380016653.01.T01:intron | 30.0% |
| AAGATATAATTTCCTCGGAG+GGG | - | Chr3:86165995-86166014 | MsG0380016653.01.T01:intron | 35.0% | |
| CTTCATTGGGATTTGAGAAT+TGG | - | Chr3:86166153-86166172 | MsG0380016653.01.T01:intron | 35.0% | |
| GAAGAGGGATAATAGACTTA+CGG | + | Chr3:86165382-86165401 | None:intergenic | 35.0% | |
| GATAATAGACTTACGGTGAT+TGG | + | Chr3:86165375-86165394 | None:intergenic | 35.0% | |
| GTTTGTTTAGTGACACTGTT+TGG | + | Chr3:86166377-86166396 | None:intergenic | 35.0% | |
| TCATTCCATACTGTGTTTGT+AGG | - | Chr3:86166590-86166609 | MsG0380016653.01.T01:CDS | 35.0% | |
| ! | ATTTTGTGCTGTGATCAAGT+TGG | - | Chr3:86165934-86165953 | MsG0380016653.01.T01:intron | 35.0% |
| ! | TCTTTTGTTACTGTTTGGGT+TGG | - | Chr3:86165446-86165465 | MsG0380016653.01.T01:three_prime_UTR | 35.0% |
| ! | TTCCATTTTACATCTGATGC+GGG | - | Chr3:86166858-86166877 | MsG0380016653.01.T01:five_prime_UTR | 35.0% |
| ! | TTTTGTGCTGTGATCAAGTT+GGG | - | Chr3:86165935-86165954 | MsG0380016653.01.T01:intron | 35.0% |
| !! | TAGTTTGTTGTAGCCAGATT+AGG | - | Chr3:86166677-86166696 | MsG0380016653.01.T01:intron | 35.0% |
| !!! | GTTTGGGTTGGTTTTTGTTT+AGG | - | Chr3:86165458-86165477 | MsG0380016653.01.T01:three_prime_UTR | 35.0% |
| AAAATGAGTTCCGGCGAATT+GGG | - | Chr3:86165309-86165328 | MsG0380016653.01.T01:three_prime_UTR | 40.0% | |
| ATCAACAAGACAATCTTCCC+AGG | + | Chr3:86166341-86166360 | None:intergenic | 40.0% | |
| ATGCGGGAATATATCATACC+AGG | - | Chr3:86166874-86166893 | MsG0380016653.01.T01:five_prime_UTR | 40.0% | |
| ATTGTTCTGCCACACAAACT+AGG | + | Chr3:86165279-86165298 | None:intergenic | 40.0% | |
| GAAGAAAGTGACGATGACAT+GGG | - | Chr3:86166624-86166643 | MsG0380016653.01.T01:CDS | 40.0% | |
| GAAGATCGGTACTTTGTTGA+AGG | - | Chr3:86165485-86165504 | MsG0380016653.01.T01:exon | 40.0% | |
| GATATAGGGCCAGTTATGAT+TGG | + | Chr3:86166415-86166434 | None:intergenic | 40.0% | |
| TTCCATACTGTGTTTGTAGG+AGG | - | Chr3:86166593-86166612 | MsG0380016653.01.T01:CDS | 40.0% | |
| TTCCCGCATCAGATGTAAAA+TGG | + | Chr3:86166863-86166882 | None:intergenic | 40.0% | |
| TTCCTCCTACAAACACAGTA+TGG | + | Chr3:86166598-86166617 | None:intergenic | 40.0% | |
| TTGTTCTGCCACACAAACTA+GGG | + | Chr3:86165278-86165297 | None:intergenic | 40.0% | |
| TTTGTTTAGGCGGAGAAGAT+CGG | - | Chr3:86165471-86165490 | MsG0380016653.01.T01:three_prime_UTR | 40.0% | |
| ! | CAATACCTTCTTTTCAACGG+CGG | + | Chr3:86165676-86165695 | None:intergenic | 40.0% |
| ! | TTCGTAAACCCTAGTTTGTG+TGG | - | Chr3:86165267-86165286 | MsG0380016653.01.T01:three_prime_UTR | 40.0% |
| ! | TTTGTGCTGTGATCAAGTTG+GGG | - | Chr3:86165936-86165955 | MsG0380016653.01.T01:intron | 40.0% |
| !! | GATGATCTCGTTTTGAACTC+CGG | - | Chr3:86165576-86165595 | MsG0380016653.01.T01:intron | 40.0% |
| !!! | TGGGTTGGTTTTTGTTTAGG+CGG | - | Chr3:86165461-86165480 | MsG0380016653.01.T01:three_prime_UTR | 40.0% |
| ACGTCACCGTTGAATCTTAC+TGG | - | Chr3:86165514-86165533 | MsG0380016653.01.T01:CDS | 45.0% | |
| CAAAATGAGTTCCGGCGAAT+TGG | - | Chr3:86165308-86165327 | MsG0380016653.01.T01:three_prime_UTR | 45.0% | |
| CCAGATTAGGACTCCTTTCA+AGG | - | Chr3:86166690-86166709 | MsG0380016653.01.T01:intron | 45.0% | |
| CCTTGAAAGGAGTCCTAATC+TGG | + | Chr3:86166693-86166712 | None:intergenic | 45.0% | |
| GCTTGGCCAGTAAGATTCAA+CGG | + | Chr3:86165523-86165542 | None:intergenic | 45.0% | |
| GGAAGAAAGTGACGATGACA+TGG | - | Chr3:86166623-86166642 | MsG0380016653.01.T01:CDS | 45.0% | |
| TCTGAGCAAGCTTAGCGAAT+AGG | + | Chr3:86165545-86165564 | None:intergenic | 45.0% | |
| TTAGGACTCCTTTCAAGGAG+TGG | - | Chr3:86166695-86166714 | MsG0380016653.01.T01:intron | 45.0% | |
| ! | GTCATCGTCACTTTCTTCCT+TGG | + | Chr3:86166622-86166641 | None:intergenic | 45.0% |
| GCAAGCTTAGCGAATAGGCT+TGG | + | Chr3:86165540-86165559 | None:intergenic | 50.0% | |
| GGATTCAGCCACTCCTTGAA+AGG | + | Chr3:86166706-86166725 | None:intergenic | 50.0% | |
| GTAAATGCAGCCCAATTCGC+CGG | + | Chr3:86165322-86165341 | None:intergenic | 50.0% | |
| GTGTTTGTAGGAGGAAGCCA+AGG | - | Chr3:86166602-86166621 | MsG0380016653.01.T01:CDS | 50.0% | |
| TGATTGGGATTCCATCGTCG+TGG | + | Chr3:86165359-86165378 | None:intergenic | 50.0% | |
| ACCTGCCGCCGTTGAAAAGA+AGG | - | Chr3:86165668-86165687 | MsG0380016653.01.T01:intron | 55.0% | |
| ACCTTGATCCTCCACGACGA+TGG | - | Chr3:86165345-86165364 | MsG0380016653.01.T01:three_prime_UTR | 55.0% | |
| ATCGTCGTGGAGGATCAAGG+TGG | + | Chr3:86165346-86165365 | None:intergenic | 55.0% | |
| TCCATCGTCGTGGAGGATCA+AGG | + | Chr3:86165349-86165368 | None:intergenic | 55.0% | |
| TTGGGATTCCATCGTCGTGG+AGG | + | Chr3:86165356-86165375 | None:intergenic | 55.0% | |
| ! | ACCTTCTTTTCAACGGCGGC+AGG | + | Chr3:86165672-86165691 | None:intergenic | 55.0% |
| ! | CTTTTCAACGGCGGCAGGTT+CGG | + | Chr3:86165667-86165686 | None:intergenic | 55.0% |
| !! | GTTTTGAACTCCGGCGCTGT+TGG | - | Chr3:86165585-86165604 | MsG0380016653.01.T01:intron | 55.0% |
| ACCAGCAGCGGGTGCAGATA+CGG | + | Chr3:86165625-86165644 | None:intergenic | 60.0% | |
| CGGATACAGAATCCCCTCCG+AGG | + | Chr3:86166010-86166029 | None:intergenic | 60.0% | |
| GGGTGCAGATACGGCAACAG+CGG | + | Chr3:86165616-86165635 | None:intergenic | 60.0% | |
| TTGAACTCCGGCGCTGTTGG+TGG | - | Chr3:86165588-86165607 | MsG0380016653.01.T01:intron | 60.0% | |
| GTATCTGCACCCGCTGCTGG+TGG | - | Chr3:86165624-86165643 | MsG0380016653.01.T01:intron | 65.0% | |
| AGCGGCACCACCAACAGCGC+CGG | + | Chr3:86165598-86165617 | None:intergenic | 70.0% | |
| GCCGTATCTGCACCCGCTGC+TGG | - | Chr3:86165621-86165640 | MsG0380016653.01.T01:intron | 70.0% | |
| GGCAGGTTCGGCAGCTGCTG+CGG | + | Chr3:86165655-86165674 | None:intergenic | 70.0% | |
| TCTGCACCCGCTGCTGGTGG+TGG | - | Chr3:86165627-86165646 | MsG0380016653.01.T01:intron | 70.0% | |
| TGCGGCTCCACCACCAGCAG+CGG | + | Chr3:86165637-86165656 | None:intergenic | 70.0% | |
| GCGGCTCCACCACCAGCAGC+GGG | + | Chr3:86165636-86165655 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 86165261 | 86166903 | 86165261 | ID=MsG0380016653.01;Name=MsG0380016653.01 |
| Chr3 | mRNA | 86165261 | 86166903 | 86165261 | ID=MsG0380016653.01.T01;Parent=MsG0380016653.01;Name=MsG0380016653.01.T01;_AED=0.47;_eAED=0.47;_QI=51|1|1|1|0.5|0.66|3|238|110 |
| Chr3 | exon | 86165261 | 86165552 | 86165261 | ID=MsG0380016653.01.T01:exon:22112;Parent=MsG0380016653.01.T01 |
| Chr3 | exon | 86166475 | 86166684 | 86166475 | ID=MsG0380016653.01.T01:exon:22111;Parent=MsG0380016653.01.T01 |
| Chr3 | exon | 86166784 | 86166903 | 86166784 | ID=MsG0380016653.01.T01:exon:22110;Parent=MsG0380016653.01.T01 |
| Chr3 | five_prime_UTR | 86166853 | 86166903 | 86166853 | ID=MsG0380016653.01.T01:five_prime_utr;Parent=MsG0380016653.01.T01 |
| Chr3 | CDS | 86166784 | 86166852 | 86166784 | ID=MsG0380016653.01.T01:cds;Parent=MsG0380016653.01.T01 |
| Chr3 | CDS | 86166475 | 86166684 | 86166475 | ID=MsG0380016653.01.T01:cds;Parent=MsG0380016653.01.T01 |
| Chr3 | CDS | 86165499 | 86165552 | 86165499 | ID=MsG0380016653.01.T01:cds;Parent=MsG0380016653.01.T01 |
| Chr3 | three_prime_UTR | 86165261 | 86165498 | 86165261 | ID=MsG0380016653.01.T01:three_prime_utr;Parent=MsG0380016653.01.T01 |
| Gene Sequence |
| Protein sequence |
