AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027752.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027752.01.T01 MTR_4g029170 89.116 147 13 1 1 144 1 147 1.14e-92 271
MsG0580027752.01.T01 MTR_4g029180 86.395 147 17 1 1 144 1 147 3.13e-79 237
MsG0580027752.01.T01 MTR_5g074710 64.844 128 45 0 8 135 6 133 1.21e-56 180
MsG0580027752.01.T01 MTR_5g074740 64.444 135 46 1 1 135 1 133 2.16e-56 179
MsG0580027752.01.T01 MTR_5g074760 63.704 135 47 1 1 135 1 133 4.87e-56 178
MsG0580027752.01.T01 MTR_5g074860 65.625 128 41 1 11 135 10 137 1.30e-53 171
MsG0580027752.01.T01 MTR_5g074860 65.625 128 41 1 11 135 10 137 3.82e-53 171
MsG0580027752.01.T01 MTR_4g074990 53.793 145 61 3 3 144 2 143 1.89e-48 158
MsG0580027752.01.T01 MTR_4g074980 54.110 146 60 4 3 144 2 144 5.51e-48 155
MsG0580027752.01.T01 MTR_4g074980 54.110 146 60 4 3 144 2 144 8.96e-48 156
MsG0580027752.01.T01 MTR_4g083710 53.741 147 64 2 1 144 1 146 1.05e-47 157
MsG0580027752.01.T01 MTR_4g074995 54.545 143 59 3 5 144 4 143 8.52e-47 154
MsG0580027752.01.T01 MTR_5g074970 54.795 146 62 2 2 144 5 149 1.08e-46 154
MsG0580027752.01.T01 MTR_8g076820 60.976 123 44 2 25 144 28 149 3.08e-45 150
MsG0580027752.01.T01 MTR_7g072480 58.824 136 52 2 12 144 9 143 8.00e-45 149
MsG0580027752.01.T01 MTR_3g467600 55.147 136 59 2 1 135 1 135 9.46e-45 149
MsG0580027752.01.T01 MTR_5g083860 55.474 137 56 3 11 144 16 150 1.07e-44 149
MsG0580027752.01.T01 MTR_4g125940 56.849 146 57 3 2 144 3 145 1.41e-44 149
MsG0580027752.01.T01 MTR_3g466200 60.484 124 47 2 14 136 11 133 1.85e-44 148
MsG0580027752.01.T01 MTR_5g021060 60.331 121 44 2 27 144 30 149 9.71e-44 147
MsG0580027752.01.T01 MTR_2g084010 51.079 139 64 2 9 144 7 144 4.18e-43 145
MsG0580027752.01.T01 MTR_2g084090 50.000 142 67 2 6 144 4 144 7.15e-43 144
MsG0580027752.01.T01 MTR_4g029200 53.333 135 59 2 13 144 32 165 1.67e-42 144
MsG0580027752.01.T01 MTR_3g072260 58.015 131 50 2 10 136 5 134 1.70e-42 138
MsG0580027752.01.T01 MTR_2g084080 50.000 142 67 2 6 144 4 144 1.70e-42 143
MsG0580027752.01.T01 MTR_2g084110 51.408 142 64 3 7 144 4 144 5.71e-42 142
MsG0580027752.01.T01 MTR_2g084020 50.360 139 65 2 9 144 7 144 8.41e-42 141
MsG0580027752.01.T01 MTR_2g084000 51.429 140 62 4 10 144 7 145 6.24e-41 139
MsG0580027752.01.T01 MTR_3g072190 54.000 150 58 5 1 144 1 145 1.25e-40 139
MsG0580027752.01.T01 MTR_7g026990 51.079 139 64 2 9 144 13 150 2.60e-40 138
MsG0580027752.01.T01 MTR_4g031140 51.799 139 61 3 9 144 12 147 2.61e-40 138
MsG0580027752.01.T01 MTR_1g115900 54.098 122 55 1 14 135 14 134 2.69e-40 138
MsG0580027752.01.T01 MTR_1g022970 56.140 114 49 1 26 139 45 157 2.71e-40 138
MsG0580027752.01.T01 MTR_3g094650 49.645 141 63 3 7 144 12 147 3.29e-40 137
MsG0580027752.01.T01 MTR_2g040000 58.678 121 44 3 27 144 29 146 1.20e-39 136
MsG0580027752.01.T01 MTR_4g030890 54.331 127 54 2 21 144 94 219 1.42e-39 138
MsG0580027752.01.T01 MTR_4g122640 56.693 127 51 2 21 144 32 157 1.45e-39 136
MsG0580027752.01.T01 MTR_7g072510 55.372 121 50 2 27 144 20 139 5.56e-39 134
MsG0580027752.01.T01 MTR_4g029190 54.032 124 52 3 25 144 43 165 7.24e-39 134
MsG0580027752.01.T01 MTR_7g093370 51.429 140 64 3 1 139 45 181 8.41e-39 135
MsG0580027752.01.T01 MTR_5g017850 48.921 139 67 2 9 144 9 146 2.19e-38 133
MsG0580027752.01.T01 MTR_3g094630 55.882 136 55 3 13 144 13 147 1.37e-37 130
MsG0580027752.01.T01 MTR_1g054205 52.344 128 55 3 9 135 10 132 2.21e-37 130
MsG0580027752.01.T01 MTR_3g086710 92.188 64 5 0 9 72 1 64 2.96e-37 123
MsG0580027752.01.T01 MTR_3g094670 60.331 121 44 2 27 144 28 147 9.95e-37 129
MsG0580027752.01.T01 MTR_5g017860 47.482 139 69 2 9 144 9 146 1.62e-36 128
MsG0580027752.01.T01 MTR_3g466180 51.220 123 59 1 1 123 5 126 5.34e-36 127
MsG0580027752.01.T01 MTR_2g028980 48.322 149 71 3 1 144 1 148 6.56e-36 127
MsG0580027752.01.T01 MTR_5g014100 58.182 110 43 2 27 135 26 133 8.98e-36 126
MsG0580027752.01.T01 MTR_2g029820 45.638 149 70 4 14 152 16 163 7.14e-35 124
MsG0580027752.01.T01 MTR_5g049280 51.818 110 52 1 27 136 33 141 1.52e-34 123
MsG0580027752.01.T01 MTR_2g029815 47.445 137 68 2 11 144 13 148 2.61e-34 123
MsG0580027752.01.T01 MTR_4g125940 70.652 92 21 3 56 144 2 90 3.15e-34 121
MsG0580027752.01.T01 MTR_2g029800 48.507 134 65 3 14 144 16 148 6.19e-34 122
MsG0580027752.01.T01 MTR_0155s0040 46.094 128 61 3 14 135 8 133 2.30e-33 119
MsG0580027752.01.T01 MTR_2g029750 43.284 134 72 2 14 144 16 148 9.93e-33 119
MsG0580027752.01.T01 MTR_4g046713 45.255 137 71 3 1 137 3 135 1.06e-32 118
MsG0580027752.01.T01 MTR_1g086490 47.368 133 67 2 4 134 5 136 2.11e-32 117
MsG0580027752.01.T01 MTR_2g029560 45.038 131 68 2 17 144 14 143 2.14e-32 117
MsG0580027752.01.T01 MTR_2g088770 44.118 136 70 4 10 142 9 141 2.95e-32 117
MsG0580027752.01.T01 MTR_2g029910 46.341 123 65 1 14 136 17 138 4.35e-32 117
MsG0580027752.01.T01 MTR_2g029830 48.760 121 58 2 27 144 28 147 1.74e-31 115
MsG0580027752.01.T01 MTR_2g029860 45.324 139 70 3 11 144 11 148 2.56e-31 115
MsG0580027752.01.T01 MTR_2g029730 44.275 131 69 2 17 144 15 144 3.49e-31 114
MsG0580027752.01.T01 MTR_1g086320 45.865 133 69 2 4 134 5 136 3.86e-31 114
MsG0580027752.01.T01 MTR_2g029850 47.761 134 66 3 14 144 16 148 4.17e-31 114
MsG0580027752.01.T01 MTR_7g086870 49.558 113 55 2 27 139 22 132 1.12e-30 112
MsG0580027752.01.T01 MTR_2g029740 43.284 134 72 2 14 144 16 148 2.62e-30 112
MsG0580027752.01.T01 MTR_1g025980 42.446 139 74 4 7 142 5 140 3.85e-30 111
MsG0580027752.01.T01 MTR_7g086820 46.154 117 61 2 24 140 17 131 8.30e-30 110
MsG0580027752.01.T01 MTR_7g107520 42.308 130 72 3 5 134 4 130 1.16e-29 110
MsG0580027752.01.T01 MTR_1g077000 47.414 116 59 2 27 142 39 152 2.23e-29 109
MsG0580027752.01.T01 MTR_6g027440 40.000 130 71 3 9 138 8 130 1.02e-28 107
MsG0580027752.01.T01 MTR_4g114210 46.721 122 60 3 14 135 8 124 3.52e-28 106
MsG0580027752.01.T01 MTR_3g092990 43.750 128 71 1 14 141 13 139 5.40e-28 105
MsG0580027752.01.T01 MTR_5g022870 44.615 130 69 3 10 139 7 133 5.63e-28 105
MsG0580027752.01.T01 MTR_1g038680 49.533 107 52 2 31 136 33 138 6.70e-28 105
MsG0580027752.01.T01 MTR_8g075100 45.763 118 62 2 22 139 21 136 1.17e-27 105
MsG0580027752.01.T01 MTR_2g008710 42.647 136 72 4 7 141 6 136 2.49e-27 104
MsG0580027752.01.T01 MTR_2g008160 48.214 112 54 3 25 136 22 129 3.09e-27 101
MsG0580027752.01.T01 MTR_2g067440 43.972 141 69 4 2 135 28 165 5.20e-27 104
MsG0580027752.01.T01 MTR_1g101830 40.690 145 78 4 1 142 4 143 9.86e-27 102
MsG0580027752.01.T01 MTR_2g008160 48.214 112 54 3 25 136 22 129 4.01e-26 100
MsG0580027752.01.T01 MTR_2g008160 48.214 112 54 3 25 136 22 129 5.38e-26 100
MsG0580027752.01.T01 MTR_2g437770 47.273 110 53 3 27 136 50 154 1.54e-25 99.8
MsG0580027752.01.T01 MTR_2g077990 50.000 114 53 3 25 136 74 185 2.25e-25 100
MsG0580027752.01.T01 MTR_2g078280 47.863 117 57 3 25 139 74 188 2.58e-25 99.8
MsG0580027752.01.T01 MTR_2g078610 47.863 117 57 3 25 139 74 188 8.18e-25 98.6
MsG0580027752.01.T01 MTR_4g095450 42.400 125 68 3 14 135 14 137 4.03e-23 93.2
MsG0580027752.01.T01 MTR_4g133800 36.424 151 72 6 6 139 5 148 1.77e-22 91.3
MsG0580027752.01.T01 MTR_4g087965 42.742 124 67 3 15 135 30 152 1.84e-22 91.7
MsG0580027752.01.T01 MTR_6g043240 33.582 134 86 3 7 140 22 152 2.51e-22 91.3
MsG0580027752.01.T01 MTR_8g062780 41.353 133 75 3 6 137 3 133 5.72e-22 90.1
MsG0580027752.01.T01 MTR_6g043280 38.261 115 68 3 26 139 40 152 7.44e-22 89.7
MsG0580027752.01.T01 MTR_5g016010 41.221 131 71 4 8 135 10 137 1.10e-21 89.4
MsG0580027752.01.T01 MTR_7g029030 41.803 122 64 4 19 135 13 132 2.02e-21 88.6
MsG0580027752.01.T01 MTR_1g009750 36.879 141 86 3 1 139 1 140 4.55e-21 87.4
MsG0580027752.01.T01 MTR_1g089005 42.975 121 61 3 27 141 15 133 5.67e-21 84.0
MsG0580027752.01.T01 MTR_2g067450 47.788 113 54 4 25 135 9 118 9.25e-21 86.7
MsG0580027752.01.T01 MTR_2g099175 41.667 120 66 2 15 134 24 139 3.02e-20 85.5
MsG0580027752.01.T01 MTR_1g090760 40.000 135 75 5 6 135 4 137 9.96e-20 84.0
MsG0580027752.01.T01 MTR_6g043460 37.838 111 67 2 26 135 35 144 3.11e-19 82.8
MsG0580027752.01.T01 MTR_3g072190 58.974 78 28 2 70 144 2 78 3.67e-19 81.3
MsG0580027752.01.T01 MTR_4g132110 40.708 113 65 2 25 137 30 140 5.17e-19 82.0
MsG0580027752.01.T01 MTR_4g132110 40.708 113 65 2 25 137 30 140 5.43e-19 82.0
MsG0580027752.01.T01 MTR_3g105790 35.938 128 77 2 8 135 6 128 6.65e-19 81.6
MsG0580027752.01.T01 MTR_4g127670 45.045 111 56 4 27 135 24 131 7.15e-19 81.6
MsG0580027752.01.T01 MTR_7g072490 56.000 75 29 2 73 144 2 75 7.67e-19 79.7
MsG0580027752.01.T01 MTR_4g114220 50.602 83 30 3 53 135 29 100 1.62e-18 77.0
MsG0580027752.01.T01 MTR_6g048160 56.338 71 26 3 66 136 22 87 6.35e-18 74.3
MsG0580027752.01.T01 MTR_4g132490 35.556 135 81 3 9 139 8 140 1.03e-17 78.6
MsG0580027752.01.T01 MTR_1g066380 39.823 113 64 3 24 135 24 133 2.11e-17 77.4
MsG0580027752.01.T01 MTR_1g066710 41.071 112 62 3 25 135 25 133 1.02e-16 75.5
MsG0580027752.01.T01 MTR_3g092990 38.281 128 67 2 14 141 13 128 1.46e-16 75.1
MsG0580027752.01.T01 MTR_1g066640 41.071 112 62 3 25 135 25 133 1.78e-16 75.1
MsG0580027752.01.T01 MTR_5g033470 36.522 115 69 4 27 139 73 185 4.16e-16 74.3
MsG0580027752.01.T01 MTR_1g066680 41.964 112 60 4 25 135 25 132 6.87e-16 73.6
MsG0580027752.01.T01 MTR_2g029930 36.111 108 44 2 9 105 1 94 7.03e-16 69.3
MsG0580027752.01.T01 MTR_1g009750 34.746 118 75 2 1 117 1 117 5.25e-15 70.9
MsG0580027752.01.T01 MTR_2g029830 50.667 75 33 2 73 144 6 79 1.44e-14 69.3
MsG0580027752.01.T01 MTR_0147s0010 38.053 113 56 3 27 139 77 175 3.31e-13 66.2
MsG0580027752.01.T01 MTR_4g012865 43.077 65 37 0 30 94 80 144 4.52e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027752.01.T01 AT5G05340 70.270 111 32 1 27 137 30 139 1.36e-48 159
MsG0580027752.01.T01 AT1G14540 54.688 128 57 1 7 134 1 127 9.71e-45 149
MsG0580027752.01.T01 AT1G14550 51.049 143 64 3 7 144 4 145 2.13e-44 148
MsG0580027752.01.T01 AT4G36430 59.504 121 45 2 27 144 30 149 2.40e-43 146
MsG0580027752.01.T01 AT5G06720 52.273 132 59 2 14 142 19 149 3.25e-43 145
MsG0580027752.01.T01 AT5G66390 53.285 137 60 2 11 144 17 152 3.82e-43 145
MsG0580027752.01.T01 AT2G18150 60.331 121 44 2 27 144 36 155 5.56e-43 145
MsG0580027752.01.T01 AT1G44970 54.472 123 55 1 17 139 35 156 9.74e-43 145
MsG0580027752.01.T01 AT2G18140 59.504 121 45 2 27 144 35 154 1.09e-42 144
MsG0580027752.01.T01 AT3G50990 53.906 128 55 2 20 144 34 160 4.16e-42 143
MsG0580027752.01.T01 AT5G19890 53.741 147 57 4 1 144 8 146 5.56e-42 142
MsG0580027752.01.T01 AT5G06730 50.758 132 61 2 14 142 20 150 6.84e-41 140
MsG0580027752.01.T01 AT5G58400 50.350 143 67 2 5 144 8 149 2.50e-40 138
MsG0580027752.01.T01 AT4G16270 59.483 116 43 2 32 144 55 169 2.05e-38 134
MsG0580027752.01.T01 AT4G08780 51.261 119 54 2 27 142 24 141 2.38e-38 133
MsG0580027752.01.T01 AT3G49120 50.781 128 59 2 20 144 25 151 5.51e-38 132
MsG0580027752.01.T01 AT3G32980 51.220 123 56 2 25 144 29 150 6.33e-38 132
MsG0580027752.01.T01 AT4G08770 53.782 119 51 2 27 142 24 141 6.74e-38 132
MsG0580027752.01.T01 AT5G58390 54.478 134 57 2 14 144 8 140 1.11e-37 131
MsG0580027752.01.T01 AT2G35380 51.880 133 57 3 8 135 7 137 1.09e-36 129
MsG0580027752.01.T01 AT3G49110 50.407 123 57 2 25 144 31 152 2.39e-36 128
MsG0580027752.01.T01 AT1G49570 52.419 124 53 3 25 144 46 167 3.11e-36 128
MsG0580027752.01.T01 AT2G22420 47.552 143 69 3 7 144 1 142 5.27e-36 127
MsG0580027752.01.T01 AT1G68850 43.066 137 72 3 5 136 3 138 1.28e-34 123
MsG0580027752.01.T01 AT2G38380 48.837 129 60 3 20 144 24 150 1.28e-33 121
MsG0580027752.01.T01 AT2G38390 46.094 128 65 2 20 144 24 150 3.23e-33 120
MsG0580027752.01.T01 AT5G42180 47.500 120 58 3 26 142 22 139 5.37e-32 116
MsG0580027752.01.T01 AT5G19880 47.328 131 61 3 12 135 5 134 6.83e-32 116
MsG0580027752.01.T01 AT3G03670 47.541 122 57 3 14 135 15 129 2.01e-30 112
MsG0580027752.01.T01 AT5G15180 42.446 139 72 5 9 142 12 147 2.73e-30 112
MsG0580027752.01.T01 AT5G51890 44.604 139 69 4 7 142 9 142 4.06e-30 111
MsG0580027752.01.T01 AT4G11290 41.791 134 75 3 5 137 3 134 5.84e-30 111
MsG0580027752.01.T01 AT3G21770 44.615 130 66 4 16 142 18 144 2.68e-29 109
MsG0580027752.01.T01 AT5G64120 46.552 116 54 4 30 142 38 148 3.08e-29 109
MsG0580027752.01.T01 AT1G05240 46.903 113 55 4 30 140 29 138 4.15e-29 108
MsG0580027752.01.T01 AT1G05250 46.903 113 55 4 30 140 29 138 4.15e-29 108
MsG0580027752.01.T01 AT4G26010 45.299 117 62 2 19 135 14 128 4.26e-29 108
MsG0580027752.01.T01 AT4G26010 45.299 117 62 2 19 135 42 156 5.87e-29 108
MsG0580027752.01.T01 AT3G01190 46.667 120 58 4 26 142 25 141 1.06e-28 107
MsG0580027752.01.T01 AT1G05260 48.182 110 54 3 27 136 26 132 3.78e-28 106
MsG0580027752.01.T01 AT2G39040 50.909 110 51 3 27 135 46 153 4.91e-28 106
MsG0580027752.01.T01 AT5G22410 43.902 123 64 3 13 135 14 131 5.10e-28 106
MsG0580027752.01.T01 AT4G33420 48.182 110 55 2 26 135 36 143 7.67e-28 105
MsG0580027752.01.T01 AT2G41480 43.972 141 71 4 5 142 7 142 1.49e-27 105
MsG0580027752.01.T01 AT4G33420 48.182 110 55 2 26 135 83 190 1.87e-27 105
MsG0580027752.01.T01 AT5G17820 44.444 126 65 3 10 135 7 127 4.68e-27 103
MsG0580027752.01.T01 AT5G17820 44.444 126 65 3 10 135 60 180 5.24e-27 103
MsG0580027752.01.T01 AT1G71695 43.478 115 63 2 26 139 43 156 9.16e-27 103
MsG0580027752.01.T01 AT5G64100 48.305 118 53 4 30 144 40 152 9.32e-27 102
MsG0580027752.01.T01 AT5G39580 46.552 116 54 4 30 142 28 138 1.12e-26 100
MsG0580027752.01.T01 AT5G39580 46.552 116 54 4 30 142 28 138 2.03e-26 101
MsG0580027752.01.T01 AT5G67400 41.860 129 71 3 13 138 13 140 6.98e-26 100
MsG0580027752.01.T01 AT4G25980 47.706 109 53 3 27 135 71 175 1.51e-25 99.0
MsG0580027752.01.T01 AT1G77100 44.094 127 63 4 9 135 11 129 3.77e-25 98.6
MsG0580027752.01.T01 AT1G34510 41.322 121 69 2 15 135 10 128 5.86e-25 97.8
MsG0580027752.01.T01 AT4G25980 47.706 109 53 3 27 135 26 130 7.40e-25 97.8
MsG0580027752.01.T01 AT3G49960 38.760 129 75 3 14 139 14 141 1.58e-24 97.1
MsG0580027752.01.T01 AT5G64110 48.000 125 57 4 14 135 18 137 2.14e-24 96.7
MsG0580027752.01.T01 AT4G33870 41.739 115 65 2 25 139 66 178 5.69e-23 93.6
MsG0580027752.01.T01 AT4G37520 40.984 122 70 2 25 144 25 146 7.64e-22 89.7
MsG0580027752.01.T01 AT4G37520 43.363 113 62 2 25 135 25 137 1.08e-21 89.4
MsG0580027752.01.T01 AT4G31760 37.778 135 79 2 8 142 10 139 1.59e-21 89.0
MsG0580027752.01.T01 AT5G14130 37.984 129 77 3 9 136 55 181 1.67e-21 89.4
MsG0580027752.01.T01 AT5G14130 37.984 129 77 3 9 136 14 140 1.71e-21 89.0
MsG0580027752.01.T01 AT1G30870 42.342 111 57 3 27 136 51 155 2.34e-21 88.6
MsG0580027752.01.T01 AT2G18980 41.085 129 68 4 14 139 12 135 2.38e-21 88.2
MsG0580027752.01.T01 AT4G37530 41.593 113 64 2 25 135 25 137 2.50e-21 87.8
MsG0580027752.01.T01 AT4G37530 41.593 113 64 2 25 135 25 137 4.18e-21 87.8
MsG0580027752.01.T01 AT2G24800 41.441 111 60 2 27 137 31 136 1.12e-20 85.1
MsG0580027752.01.T01 AT3G28200 39.655 116 68 2 22 136 16 130 3.78e-20 85.1
MsG0580027752.01.T01 AT5G40150 43.363 113 62 2 25 136 30 141 5.22e-20 84.7
MsG0580027752.01.T01 AT2G37130 42.056 107 60 2 30 136 2 106 6.79e-20 84.0
MsG0580027752.01.T01 AT2G37130 41.818 110 62 2 27 136 30 137 8.53e-20 84.3
MsG0580027752.01.T01 AT2G24800 41.441 111 60 2 27 137 31 136 1.89e-19 83.2
MsG0580027752.01.T01 AT4G21960 39.316 117 69 2 21 137 25 139 5.77e-19 82.0
MsG0580027752.01.T01 AT5G47000 36.641 131 79 3 7 135 13 141 2.73e-18 80.1
MsG0580027752.01.T01 AT4G17690 38.739 111 66 2 27 136 26 135 1.04e-17 78.6
MsG0580027752.01.T01 AT5G24070 43.564 101 52 3 35 135 45 140 1.18e-17 78.6
MsG0580027752.01.T01 AT2G43480 38.281 128 72 4 10 135 18 140 1.78e-17 77.8
MsG0580027752.01.T01 AT4G30170 38.136 118 67 3 25 140 25 138 6.49e-17 76.3
MsG0580027752.01.T01 AT1G24110 40.187 107 62 2 27 132 22 127 9.40e-17 75.9
MsG0580027752.01.T01 AT2G34060 32.877 146 86 4 1 135 8 152 1.87e-16 75.1
MsG0580027752.01.T01 AT3G17070 38.261 115 60 4 26 135 37 145 2.64e-15 72.0
MsG0580027752.01.T01 AT2G35380 66.667 51 14 2 86 135 1 49 1.16e-12 63.9

Find 58 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTAGCTGAATTTAAATT+TGG 0.113514 5:+68050751 None:intergenic
CAGTATCTTGATGAATTAAT+TGG 0.227418 5:+68049521 None:intergenic
TGAAGTGGTAGATGAGATTA+AGG 0.231890 5:-68050725 MsG0580027752.01.T01:CDS
GTTTGAGTCTCCGCCTTCTC+TGG 0.235917 5:+68049794 None:intergenic
CTAATAGTGCTCAAAGCATT+AGG 0.267809 5:+68051312 None:intergenic
GGAAATATTAAGCCACTTAC+TGG 0.284799 5:-68049579 MsG0580027752.01.T01:three_prime_UTR
CAAGACCTCGTTGCCCTATC+TGG 0.286123 5:-68049921 MsG0580027752.01.T01:three_prime_UTR
CATGAGTAGTCATAGTAATT+TGG 0.324749 5:+68051336 None:intergenic
TGCAAAATCTATGATTAAGA+TGG 0.337659 5:-68049601 MsG0580027752.01.T01:three_prime_UTR
AAGTCGTGCCGATGCAGATT+CGG 0.343313 5:-68050015 MsG0580027752.01.T01:three_prime_UTR
TTGTTGAATGGTGGTTATAC+TGG 0.357733 5:-68049675 MsG0580027752.01.T01:three_prime_UTR
GTGAAGTTCGTTGCAATTGC+AGG 0.359490 5:-68049548 MsG0580027752.01.T01:three_prime_UTR
AAAGAAAGGGCTTCTTCATT+CGG 0.378097 5:-68049706 MsG0580027752.01.T01:three_prime_UTR
CTATCTGGAGCACACACTAT+TGG 0.391267 5:-68049906 MsG0580027752.01.T01:three_prime_UTR
CAATAGTGTGTGCTCCAGAT+AGG 0.400931 5:+68049907 None:intergenic
AGTCGTGCCGATGCAGATTC+GGG 0.407331 5:-68050014 MsG0580027752.01.T01:three_prime_UTR
TAATAGTGCTCAAAGCATTA+GGG 0.431156 5:+68051313 None:intergenic
AGAAAGACTGAATGATGGTC+CGG 0.452732 5:+68049983 None:intergenic
TGTTTCTTGTGCAGACATAT+TGG 0.453461 5:-68050671 MsG0580027752.01.T01:CDS
TTTGAGTCTCCGCCTTCTCT+GGG 0.468683 5:+68049795 None:intergenic
GCAAAATCTATGATTAAGAT+GGG 0.472740 5:-68049600 MsG0580027752.01.T01:three_prime_UTR
TGTTGTTGTCATTGTAGATT+CGG 0.474841 5:+68049856 None:intergenic
TCACCTTGTCTCCCAGTAAG+TGG 0.477158 5:+68049567 None:intergenic
GAGCATTGGTTAGAAAATAT+AGG 0.478103 5:-68049653 MsG0580027752.01.T01:three_prime_UTR
ATGTCTGCACAAGAAACAAC+TGG 0.493198 5:+68050676 None:intergenic
TCCAAGTGAATAAAATAAGT+TGG 0.513237 5:-68050494 MsG0580027752.01.T01:intron
TCGGATCAAGAATTGTTGAA+TGG 0.519874 5:-68049687 MsG0580027752.01.T01:three_prime_UTR
CCAAATTTAAATTCAGCTAG+AGG 0.524290 5:-68050751 MsG0580027752.01.T01:CDS
GAAAGACTGAATGATGGTCC+GGG 0.528311 5:+68049984 None:intergenic
TCTAGACTCTACACCTTCGA+TGG 0.530212 5:-68050794 MsG0580027752.01.T01:CDS
GGTGTGATTCAGGGTTGTGA+TGG 0.531565 5:-68050826 MsG0580027752.01.T01:intron
GCAGATTCGGGCAATATCCC+CGG 0.532728 5:-68050002 MsG0580027752.01.T01:three_prime_UTR
ACAGAATTAGTCAGCATGGT+TGG 0.537356 5:-68050535 MsG0580027752.01.T01:intron
CAAAATGTTTGTCCCAGAGA+AGG 0.543913 5:-68049807 MsG0580027752.01.T01:three_prime_UTR
AATAGTGTGTGCTCCAGATA+GGG 0.548473 5:+68049908 None:intergenic
GATCAAGAATTGTTGAATGG+TGG 0.555906 5:-68049684 MsG0580027752.01.T01:three_prime_UTR
TGAAACAGAATTAGTCAGCA+TGG 0.558992 5:-68050539 MsG0580027752.01.T01:intron
ATTATTACTAACCGCAACGA+CGG 0.600835 5:+68050630 None:intergenic
TGCAAGAGACTCCGTCGTTG+CGG 0.606891 5:-68050641 MsG0580027752.01.T01:intron
GATATTGCCCGAATCTGCAT+CGG 0.609450 5:+68050007 None:intergenic
TACACCGGCAAAATTTGATG+TGG 0.613189 5:-68049751 MsG0580027752.01.T01:three_prime_UTR
GAAATATTAAGCCACTTACT+GGG 0.616763 5:-68049578 MsG0580027752.01.T01:three_prime_UTR
GAAGCTGTTGATAAAGCATG+TGG 0.618722 5:-68050703 MsG0580027752.01.T01:CDS
AGTTGAGAAAGACTGAATGA+TGG 0.626761 5:+68049978 None:intergenic
GTAGTAAAGAAGCACCCATA+CGG 0.628918 5:+68051256 None:intergenic
GTTCAAAGAGAGAACCGTAT+GGG 0.629967 5:-68051270 MsG0580027752.01.T01:CDS
TAGTAAAGATGTCCTCACAT+AGG 0.632359 5:-68051428 None:intergenic
AATGTTTGTCCCAGAGAAGG+CGG 0.632543 5:-68049804 MsG0580027752.01.T01:three_prime_UTR
AGTTCAAAGAGAGAACCGTA+TGG 0.633955 5:-68051271 MsG0580027752.01.T01:CDS
TGGTGGTTATACTGGAGCAT+TGG 0.634930 5:-68049667 MsG0580027752.01.T01:three_prime_UTR
TTCAGCTAGAGGATTTGAAG+TGG 0.646693 5:-68050740 MsG0580027752.01.T01:CDS
GAGCTGCTAACACTATTGTG+TGG 0.648090 5:+68051388 None:intergenic
AGCTCTCGACAGTGTTACAC+CGG 0.659336 5:-68049766 MsG0580027752.01.T01:three_prime_UTR
AAGCCACTTACTGGGAGACA+AGG 0.665399 5:-68049570 MsG0580027752.01.T01:three_prime_UTR
AAAGACTGAATGATGGTCCG+GGG 0.668454 5:+68049985 None:intergenic
TAACACTGTCGAGAGCTGCA+AGG 0.690785 5:+68049772 None:intergenic
CATTGAGAAATACCTATGTG+AGG 0.711191 5:+68051416 None:intergenic
GTGCTCCAGATAGGGCAACG+AGG 0.748414 5:+68049916 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTATTTTGAACTAAT+CGG - Chr5:68050388-68050407 MsG0580027752.01.T01:intron 10.0%
!!! TTTTAATTTTGATATATTCA+AGG + Chr5:68050511-68050530 None:intergenic 10.0%
!! TAAAACAATATATACACATA+TGG + Chr5:68050777-68050796 None:intergenic 15.0%
!! AAATTTACAATTATACGTCA+TGG - Chr5:68050883-68050902 MsG0580027752.01.T01:intron 20.0%
!!! AATATTGAAGATGTTTTTGT+AGG + Chr5:68050814-68050833 None:intergenic 20.0%
!!! AATTTTAGTTACTTTTCGAA+AGG - Chr5:68049996-68050015 MsG0580027752.01.T01:three_prime_UTR 20.0%
!!! AATTTTGATATATTCAAGGT+TGG + Chr5:68050507-68050526 None:intergenic 20.0%
! ACAATATATACACATATGGA+AGG + Chr5:68050773-68050792 None:intergenic 25.0%
! ATTAATTTATGGTGTGATTC+AGG - Chr5:68050120-68050139 MsG0580027752.01.T01:intron 25.0%
! CGCAATTGATTAAAAAGAAA+GGG - Chr5:68051237-68051256 MsG0580027752.01.T01:CDS 25.0%
! GCAAAATCTATGATTAAGAT+GGG - Chr5:68051356-68051375 MsG0580027752.01.T01:CDS 25.0%
! TCCAAGTGAATAAAATAAGT+TGG - Chr5:68050462-68050481 MsG0580027752.01.T01:intron 25.0%
! TGCAAAATCTATGATTAAGA+TGG - Chr5:68051355-68051374 MsG0580027752.01.T01:CDS 25.0%
! TTAATTTATGGTGTGATTCA+GGG - Chr5:68050121-68050140 MsG0580027752.01.T01:intron 25.0%
!! CATGCTACAAACATTATTTT+TGG - Chr5:68050604-68050623 MsG0580027752.01.T01:intron 25.0%
!!! ACCAACTTATTTTATTCACT+TGG + Chr5:68050466-68050485 None:intergenic 25.0%
ATAAGCAAGTTACACAACTT+TGG + Chr5:68050537-68050556 None:intergenic 30.0%
ATCAAAAACTTCGACAATCA+GGG - Chr5:68051002-68051021 MsG0580027752.01.T01:intron 30.0%
CATGAGTAGTCATAGTAATT+TGG + Chr5:68049623-68049642 None:intergenic 30.0%
CCAAATTTAAATTCAGCTAG+AGG - Chr5:68050205-68050224 MsG0580027752.01.T01:intron 30.0%
CCTCTAGCTGAATTTAAATT+TGG + Chr5:68050208-68050227 None:intergenic 30.0%
GAAATATTAAGCCACTTACT+GGG - Chr5:68051378-68051397 MsG0580027752.01.T01:CDS 30.0%
GCGCAATTGATTAAAAAGAA+AGG - Chr5:68051236-68051255 MsG0580027752.01.T01:CDS 30.0%
TAAGCAAGTTACACAACTTT+GGG + Chr5:68050536-68050555 None:intergenic 30.0%
TGTTGTTGTCATTGTAGATT+CGG + Chr5:68051103-68051122 None:intergenic 30.0%
TTTGATATATTCAAGGTTGG+TGG + Chr5:68050504-68050523 None:intergenic 30.0%
! TAATAGTGCTCAAAGCATTA+GGG + Chr5:68049646-68049665 None:intergenic 30.0%
!! GAGCATTGGTTAGAAAATAT+AGG - Chr5:68051303-68051322 MsG0580027752.01.T01:CDS 30.0%
AAAGAAAGGGCTTCTTCATT+CGG - Chr5:68051250-68051269 MsG0580027752.01.T01:CDS 35.0%
AGTTGAGAAAGACTGAATGA+TGG + Chr5:68050981-68051000 None:intergenic 35.0%
ATTATTACTAACCGCAACGA+CGG + Chr5:68050329-68050348 None:intergenic 35.0%
CATCAAAAACTTCGACAATC+AGG - Chr5:68051001-68051020 MsG0580027752.01.T01:intron 35.0%
CATTGAGAAATACCTATGTG+AGG + Chr5:68049543-68049562 None:intergenic 35.0%
GATCAAGAATTGTTGAATGG+TGG - Chr5:68051272-68051291 MsG0580027752.01.T01:CDS 35.0%
GGAAATATTAAGCCACTTAC+TGG - Chr5:68051377-68051396 MsG0580027752.01.T01:CDS 35.0%
TCACTCCATGCATGTTTAAT+GGG - Chr5:68050740-68050759 MsG0580027752.01.T01:CDS 35.0%
TCGGATCAAGAATTGTTGAA+TGG - Chr5:68051269-68051288 MsG0580027752.01.T01:CDS 35.0%
TGAAACAGAATTAGTCAGCA+TGG - Chr5:68050417-68050436 MsG0580027752.01.T01:intron 35.0%
TGAAGTGGTAGATGAGATTA+AGG - Chr5:68050231-68050250 MsG0580027752.01.T01:intron 35.0%
TGTTTCTTGTGCAGACATAT+TGG - Chr5:68050285-68050304 MsG0580027752.01.T01:intron 35.0%
TTGTTGAATGGTGGTTATAC+TGG - Chr5:68051281-68051300 MsG0580027752.01.T01:CDS 35.0%
! CTAATAGTGCTCAAAGCATT+AGG + Chr5:68049647-68049666 None:intergenic 35.0%
! TAAGCCACATCAAATTTTGC+CGG + Chr5:68051212-68051231 None:intergenic 35.0%
!!! TTTTTTTCACTGTCCATCGA+AGG + Chr5:68050178-68050197 None:intergenic 35.0%
AATAGTGTGTGCTCCAGATA+GGG + Chr5:68051051-68051070 None:intergenic 40.0%
ACAGAATTAGTCAGCATGGT+TGG - Chr5:68050421-68050440 MsG0580027752.01.T01:intron 40.0%
ACGTCATGGAATGTGAAACT+GGG - Chr5:68050897-68050916 MsG0580027752.01.T01:intron 40.0%
AGAAAGACTGAATGATGGTC+CGG + Chr5:68050976-68050995 None:intergenic 40.0%
AGTTCAAAGAGAGAACCGTA+TGG - Chr5:68049685-68049704 MsG0580027752.01.T01:three_prime_UTR 40.0%
ATGTCTGCACAAGAAACAAC+TGG + Chr5:68050283-68050302 None:intergenic 40.0%
CAAAATGTTTGTCCCAGAGA+AGG - Chr5:68051149-68051168 MsG0580027752.01.T01:intron 40.0%
GTCACTCCATGCATGTTTAA+TGG - Chr5:68050739-68050758 MsG0580027752.01.T01:CDS 40.0%
GTTCAAAGAGAGAACCGTAT+GGG - Chr5:68049686-68049705 MsG0580027752.01.T01:three_prime_UTR 40.0%
TACACCGGCAAAATTTGATG+TGG - Chr5:68051205-68051224 MsG0580027752.01.T01:intron 40.0%
TACGTCATGGAATGTGAAAC+TGG - Chr5:68050896-68050915 MsG0580027752.01.T01:intron 40.0%
TGAAGCCCATTAAACATGCA+TGG + Chr5:68050748-68050767 None:intergenic 40.0%
TTCAGCTAGAGGATTTGAAG+TGG - Chr5:68050216-68050235 MsG0580027752.01.T01:intron 40.0%
! GAAGCTGTTGATAAAGCATG+TGG - Chr5:68050253-68050272 MsG0580027752.01.T01:intron 40.0%
!! GTAGTAAAGAAGCACCCATA+CGG + Chr5:68049703-68049722 None:intergenic 40.0%
AAAGACTGAATGATGGTCCG+GGG + Chr5:68050974-68050993 None:intergenic 45.0%
AATGTTTGTCCCAGAGAAGG+CGG - Chr5:68051152-68051171 MsG0580027752.01.T01:intron 45.0%
CAATAGTGTGTGCTCCAGAT+AGG + Chr5:68051052-68051071 None:intergenic 45.0%
GAAAGACTGAATGATGGTCC+GGG + Chr5:68050975-68050994 None:intergenic 45.0%
GAGCTGCTAACACTATTGTG+TGG + Chr5:68049571-68049590 None:intergenic 45.0%
GATATTGCCCGAATCTGCAT+CGG + Chr5:68050952-68050971 None:intergenic 45.0%
GTGAAGTTCGTTGCAATTGC+AGG - Chr5:68051408-68051427 MsG0580027752.01.T01:CDS 45.0%
TCTAGACTCTACACCTTCGA+TGG - Chr5:68050162-68050181 MsG0580027752.01.T01:intron 45.0%
TGGTGGTTATACTGGAGCAT+TGG - Chr5:68051289-68051308 MsG0580027752.01.T01:CDS 45.0%
! CTATCTGGAGCACACACTAT+TGG - Chr5:68051050-68051069 MsG0580027752.01.T01:intron 45.0%
!!! TTATTTTAATGATTAATTTA+TGG - Chr5:68050030-68050049 MsG0580027752.01.T01:three_prime_UTR 5.0%
AAGCCACTTACTGGGAGACA+AGG - Chr5:68051386-68051405 MsG0580027752.01.T01:CDS 50.0%
AGCTCTCGACAGTGTTACAC+CGG - Chr5:68051190-68051209 MsG0580027752.01.T01:intron 50.0%
GGTGTGATTCAGGGTTGTGA+TGG - Chr5:68050130-68050149 MsG0580027752.01.T01:intron 50.0%
TAACACTGTCGAGAGCTGCA+AGG + Chr5:68051187-68051206 None:intergenic 50.0%
TCACCTTGTCTCCCAGTAAG+TGG + Chr5:68051392-68051411 None:intergenic 50.0%
TTTGAGTCTCCGCCTTCTCT+GGG + Chr5:68051164-68051183 None:intergenic 50.0%
! AAGTCGTGCCGATGCAGATT+CGG - Chr5:68050941-68050960 MsG0580027752.01.T01:intron 50.0%
CAAGACCTCGTTGCCCTATC+TGG - Chr5:68051035-68051054 MsG0580027752.01.T01:intron 55.0%
GCAGATTCGGGCAATATCCC+CGG - Chr5:68050954-68050973 MsG0580027752.01.T01:intron 55.0%
GTTTGAGTCTCCGCCTTCTC+TGG + Chr5:68051165-68051184 None:intergenic 55.0%
TGCAAGAGACTCCGTCGTTG+CGG - Chr5:68050315-68050334 MsG0580027752.01.T01:intron 55.0%
! AGTCGTGCCGATGCAGATTC+GGG - Chr5:68050942-68050961 MsG0580027752.01.T01:intron 55.0%
GTGCTCCAGATAGGGCAACG+AGG + Chr5:68051043-68051062 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 68049536 68051442 68049536 ID=MsG0580027752.01;Name=MsG0580027752.01
Chr5 mRNA 68049536 68051442 68049536 ID=MsG0580027752.01.T01;Parent=MsG0580027752.01;Name=MsG0580027752.01.T01;_AED=0.44;_eAED=0.75;_QI=0|0|0|0.75|1|1|4|519|154
Chr5 exon 68051227 68051442 68051227 ID=MsG0580027752.01.T01:exon:44287;Parent=MsG0580027752.01.T01
Chr5 exon 68050642 68050836 68050642 ID=MsG0580027752.01.T01:exon:44286;Parent=MsG0580027752.01.T01
Chr5 exon 68050495 68050547 68050495 ID=MsG0580027752.01.T01:exon:44285;Parent=MsG0580027752.01.T01
Chr5 exon 68049536 68050055 68049536 ID=MsG0580027752.01.T01:exon:44284;Parent=MsG0580027752.01.T01
Chr5 CDS 68051227 68051442 68051227 ID=MsG0580027752.01.T01:cds;Parent=MsG0580027752.01.T01
Chr5 CDS 68050642 68050836 68050642 ID=MsG0580027752.01.T01:cds;Parent=MsG0580027752.01.T01
Chr5 CDS 68050495 68050547 68050495 ID=MsG0580027752.01.T01:cds;Parent=MsG0580027752.01.T01
Chr5 CDS 68050055 68050055 68050055 ID=MsG0580027752.01.T01:cds;Parent=MsG0580027752.01.T01
Chr5 three_prime_UTR 68049536 68050054 68049536 ID=MsG0580027752.01.T01:three_prime_utr;Parent=MsG0580027752.01.T01
Gene Sequence

>MsG0580027752.01.T01

ATGTCCTCACATAGGTATTTCTCAATGTTCTTCCACACAATAGTGTTAGCAGCTCTTGCAACAACGACATTTTCAGCACTAACACCAAATTACTATGACTACTCATGCCCTAATGCTTTGAGCACTATTAGAAGTGTTGTTGAAGCTGCAGTTCAAAGAGAGAACCGTATGGGTGCTTCTTTACTACGCTTGCACTTTCATGATTGCTTTGTTAATGGTTGTGATGGTTCAATTCTTCTAGACTCTACACCTTCGATGGACAGTGAAAAAAATGCAAATCCAAATTTAAATTCAGCTAGAGGATTTGAAGTGGTAGATGAGATTAAGGAAGCTGTTGATAAAGCATGTGGAAAACCAGTTGTTTCTTGTGCAGACATATTGGCTGTAGCTGCAAGAGACTCCGTCGTTGCGTCAGCATGGTTGGTTAATTTGTTTAATCAAATCCAAGTGAATAAAATAAGTTGA

Protein sequence

>MsG0580027752.01.T01

MSSHRYFSMFFHTIVLAALATTTFSALTPNYYDYSCPNALSTIRSVVEAAVQRENRMGASLLRLHFHDCFVNGCDGSILLDSTPSMDSEKNANPNLNSARGFEVVDEIKEAVDKACGKPVVSCADILAVAARDSVVASAWLVNLFNQIQVNKIS*