AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080049043.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049043.01.T01 MTR_6g090585 97.248 218 6 0 1 218 1 218 4.86e-160 441
MsG0080049043.01.T01 MTR_6g090585 96.739 184 6 0 35 218 1 184 1.75e-134 375
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049043.01.T01 AT4G29170 76.415 212 50 0 1 212 1 212 2.05e-122 346
MsG0080049043.01.T01 AT4G29170 74.619 197 50 0 16 212 1 197 2.28e-111 318
MsG0080049043.01.T01 AT4G29170 79.739 153 31 0 1 153 1 153 1.89e-85 250

Find 16 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAGATGAATTTGACTATT+TGG 0.177522 contig629end:+14632 MsG0080049043.01.T01:exon
TTGATTAAGGTATGTATTAC+TGG 0.214361 contig629end:+14895 MsG0080049043.01.T01:exon
TTTATTACAAAGGGTAAATA+TGG 0.215757 contig629end:-15278 None:intergenic
GCTTACTTACTATTTGATTA+AGG 0.238273 contig629end:+14882 MsG0080049043.01.T01:exon
TTGCTGTCTTAAGCTGGATT+AGG 0.270772 contig629end:+14811 MsG0080049043.01.T01:exon
ATTAGCTAAGCAACAGGAAT+TGG 0.361220 contig629end:+14991 MsG0080049043.01.T01:exon
TCTCTCTTGCTGTCTTAAGC+TGG 0.388467 contig629end:+14805 MsG0080049043.01.T01:exon
TGTATGATTAGCTAAGCAAC+AGG 0.467179 contig629end:+14985 MsG0080049043.01.T01:exon
ACGTAGTTATTTATTACAAA+GGG 0.493983 contig629end:-15287 None:intergenic
AACGTAGTTATTTATTACAA+AGG 0.511873 contig629end:-15288 None:intergenic
AAGTCATTTCTCTACAAAAG+AGG 0.527177 contig629end:-14775 None:intergenic
TGAAATAAGCTATAAGCTCA+TGG 0.534552 contig629end:-15160 None:intergenic
TGAGAGAAGCATGGCAACAA+GGG 0.567710 contig629end:-14708 None:intergenic
TTGAGAGAAGCATGGCAACA+AGG 0.573581 contig629end:-14709 None:intergenic
GTCAGTGTTTGAGAGAAGCA+TGG 0.603928 contig629end:-14717 None:intergenic
GAGAGAAGCATGGCAACAAG+GGG 0.617918 contig629end:-14707 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAAAAAAAAATATTA+TGG + contig629end:14431-14450 MsG0080049043.01.T01:intron 0.0%
!! TATAAAAAAAAAAATATTAT+GGG + contig629end:14432-14451 MsG0080049043.01.T01:intron 0.0%
!!! TTTTTTCTTTTTTTCTTTTT+AGG + contig629end:12871-12890 MsG0080049043.01.T01:intron 10.0%
!! AAATAACGATACATATAAAA+TGG - contig629end:13124-13143 None:intergenic 15.0%
!! AATTAAGCATAAGAAAATTT+AGG - contig629end:11713-11732 None:intergenic 15.0%
!! ATTTATATAGAAATAGCTTA+AGG - contig629end:11340-11359 None:intergenic 15.0%
!! CAAATAAACCAATTTAAATA+GGG + contig629end:12393-12412 MsG0080049043.01.T01:intron 15.0%
!! GTAAATAGAGAAAAATATTT+GGG + contig629end:15040-15059 MsG0080049043.01.T01:exon 15.0%
!! TAAATAGAGAAAAATATTTG+GGG + contig629end:15041-15060 MsG0080049043.01.T01:exon 15.0%
!! TCAAATAAACCAATTTAAAT+AGG + contig629end:12392-12411 MsG0080049043.01.T01:intron 15.0%
!! TGTAAATAGAGAAAAATATT+TGG + contig629end:15039-15058 MsG0080049043.01.T01:exon 15.0%
!! TTCTCTTTATTGATATATAA+TGG + contig629end:14390-14409 MsG0080049043.01.T01:intron 15.0%
!! TTTATATAGAAATAGCTTAA+GGG - contig629end:11339-11358 None:intergenic 15.0%
!!! AAAAAATTGTTTTTTTCTTG+CGG - contig629end:14121-14140 None:intergenic 15.0%
!!! ATATATAATGGATTTTGTTT+TGG + contig629end:14402-14421 MsG0080049043.01.T01:intron 15.0%
!!! ATATTTTTATCTTTTTGTTG+TGG + contig629end:13377-13396 MsG0080049043.01.T01:intron 15.0%
!!! CTATTTACATTTTTCATATT+TGG - contig629end:15028-15047 None:intergenic 15.0%
!!! CTTTTTTTAAAATAAAAGCA+TGG + contig629end:14220-14239 MsG0080049043.01.T01:intron 15.0%
!!! TATTATGAAATTTCTCATTT+TGG + contig629end:13335-13354 MsG0080049043.01.T01:intron 15.0%
!! AAAGAAAAAAATGCAATGTA+AGG - contig629end:12861-12880 None:intergenic 20.0%
!! AACGTAGTTATTTATTACAA+AGG - contig629end:15291-15310 None:intergenic 20.0%
!! AATTCATAAATCGTTAATGA+TGG - contig629end:10511-10530 None:intergenic 20.0%
!! ACGTAGTTATTTATTACAAA+GGG - contig629end:15290-15309 None:intergenic 20.0%
!! ACTAATAAGGATAAAATTGA+TGG - contig629end:11564-11583 None:intergenic 20.0%
!! ATAAGCTATATTTATAGCAA+AGG - contig629end:11240-11259 None:intergenic 20.0%
!! ATGCAATTACATTCAATTAT+AGG - contig629end:10670-10689 None:intergenic 20.0%
!! CGCATTAATTATGAATTATT+TGG + contig629end:10307-10326 MsG0080049043.01.T01:intron 20.0%
!! TCTAAGAATAGATAATTTGA+CGG - contig629end:14553-14572 None:intergenic 20.0%
!! TCTTTAAGTATCAGTAAATT+TGG - contig629end:14164-14183 None:intergenic 20.0%
!! TTTATTACAAAGGGTAAATA+TGG - contig629end:15281-15300 None:intergenic 20.0%
!!! AAGAAAATTTAGGATTTGTT+TGG - contig629end:11703-11722 None:intergenic 20.0%
!!! ATGTCCTTTTATTAATATCA+GGG + contig629end:14038-14057 MsG0080049043.01.T01:intron 20.0%
!!! ATGTTGTTTTTGTTTAGTTA+AGG + contig629end:10552-10571 MsG0080049043.01.T01:intron 20.0%
!!! ATTTTTTGAATGACCTTTAA+TGG + contig629end:13605-13624 MsG0080049043.01.T01:intron 20.0%
!!! CTTTTCAATTAAGACTAATA+AGG - contig629end:11577-11596 None:intergenic 20.0%
!!! GGATTTTGTTAAATTGATAA+GGG - contig629end:15260-15279 None:intergenic 20.0%
!!! GTAGTGTTAAATTTTGAAAT+AGG - contig629end:13753-13772 None:intergenic 20.0%
!!! TATTGAGTAAATAAGCATTT+TGG - contig629end:13984-14003 None:intergenic 20.0%
!!! TGATTCAGTGAATTTTTTTA+TGG + contig629end:14928-14947 MsG0080049043.01.T01:exon 20.0%
!!! TGGATTTTGTTAAATTGATA+AGG - contig629end:15261-15280 None:intergenic 20.0%
!!! TTGCTGTTTCATAAATTTAA+GGG + contig629end:13926-13945 MsG0080049043.01.T01:intron 20.0%
!!! TTTGCTGTTTCATAAATTTA+AGG + contig629end:13925-13944 MsG0080049043.01.T01:intron 20.0%
!!! TTTTTGTTGTGGATAAAAAA+TGG + contig629end:13388-13407 MsG0080049043.01.T01:intron 20.0%
! AAAAGTCATAACATGTAACA+TGG - contig629end:12016-12035 None:intergenic 25.0%
! AACAGATGAATTTGACTATT+TGG + contig629end:14632-14651 MsG0080049043.01.T01:exon 25.0%
! AACAGCAAAATCATATGAAT+CGG - contig629end:11738-11757 None:intergenic 25.0%
! AACTTAATCGAGTGTTTAAT+CGG + contig629end:10346-10365 MsG0080049043.01.T01:intron 25.0%
! AAGTCATATCATTCCATTAA+AGG - contig629end:13621-13640 None:intergenic 25.0%
! AATAAGATGTTTATCCAAAC+AGG + contig629end:11313-11332 MsG0080049043.01.T01:intron 25.0%
! ATGATGTAATTAGGTTACAT+TGG - contig629end:12635-12654 None:intergenic 25.0%
! ATTAATGAGAAAAATGCATG+AGG + contig629end:14329-14348 MsG0080049043.01.T01:intron 25.0%
! ATTTGATTCCTAAAAAAGCA+GGG - contig629end:12821-12840 None:intergenic 25.0%
! CATAGTTAAAGCGATTTAAT+CGG - contig629end:10181-10200 None:intergenic 25.0%
! CTTGTTTCAAAAGATAAGAT+AGG + contig629end:11871-11890 MsG0080049043.01.T01:CDS 25.0%
! GCTTACTTACTATTTGATTA+AGG + contig629end:14882-14901 MsG0080049043.01.T01:exon 25.0%
! GTTAGAAAAACAAAAGTTTG+TGG + contig629end:14950-14969 MsG0080049043.01.T01:exon 25.0%
! TCCTTTAAATTGATCAATGT+CGG + contig629end:13718-13737 MsG0080049043.01.T01:intron 25.0%
! TGATGTAATTAGGTTACATT+GGG - contig629end:12634-12653 None:intergenic 25.0%
! TTGATTAAGGTATGTATTAC+TGG + contig629end:14895-14914 MsG0080049043.01.T01:exon 25.0%
! TTTATGAACGAGATATTTGA+TGG + contig629end:13861-13880 MsG0080049043.01.T01:intron 25.0%
! TTTGTCTGAATACTTTCATT+GGG + contig629end:13158-13177 MsG0080049043.01.T01:intron 25.0%
!! ATGTTACATGTTATGACTTT+TGG + contig629end:12015-12034 MsG0080049043.01.T01:intron 25.0%
!! ATTTTTCTCATTAATGTCTG+CGG - contig629end:14324-14343 None:intergenic 25.0%
!! CATGTCCTTTTATTAATATC+AGG + contig629end:14037-14056 MsG0080049043.01.T01:intron 25.0%
!! GATTAAGGCTCTTTAATTTA+AGG + contig629end:13896-13915 MsG0080049043.01.T01:intron 25.0%
!! GCTTTAGGTAATATTAATCA+GGG - contig629end:14513-14532 None:intergenic 25.0%
!! GTTACTAAACAGGTATATTT+TGG - contig629end:10919-10938 None:intergenic 25.0%
!! TGCTTTAGGTAATATTAATC+AGG - contig629end:14514-14533 None:intergenic 25.0%
!!! CAAACACAACATTTTGATAA+GGG - contig629end:11519-11538 None:intergenic 25.0%
!!! CCAACTTCTAAAATTAAAAC+GGG - contig629end:14085-14104 None:intergenic 25.0%
!!! CTACTATTCCTTACTTTTTT+GGG - contig629end:14247-14266 None:intergenic 25.0%
!!! CTATCTTATCTTTTGAAACA+AGG - contig629end:11873-11892 None:intergenic 25.0%
!!! CTGTTTTTGCATATGTTATA+AGG + contig629end:11373-11392 MsG0080049043.01.T01:intron 25.0%
!!! GCCAACTTCTAAAATTAAAA+CGG - contig629end:14086-14105 None:intergenic 25.0%
!!! TACTATTCCTTACTTTTTTG+GGG - contig629end:14246-14265 None:intergenic 25.0%
!!! TCAAACACAACATTTTGATA+AGG - contig629end:11520-11539 None:intergenic 25.0%
!!! TCTACTATTCCTTACTTTTT+TGG - contig629end:14248-14267 None:intergenic 25.0%
!!! TGATGTATTGGTATTGATTT+TGG + contig629end:13195-13214 MsG0080049043.01.T01:intron 25.0%
AAAAACAGCAGTTACTAAAC+AGG - contig629end:10929-10948 None:intergenic 30.0%
AAAAGATAAGATAGGCACTT+CGG + contig629end:11879-11898 MsG0080049043.01.T01:CDS 30.0%
AACCCAAGAAAAAACATGAA+AGG + contig629end:14197-14216 MsG0080049043.01.T01:intron 30.0%
AAGTCATTTCTCTACAAAAG+AGG - contig629end:14778-14797 None:intergenic 30.0%
ACCGACATTGATCAATTTAA+AGG - contig629end:13722-13741 None:intergenic 30.0%
ATTGATCAATGCTTACGATT+TGG - contig629end:13667-13686 None:intergenic 30.0%
ATTTGTTTGGTAGAAACTAG+CGG - contig629end:11690-11709 None:intergenic 30.0%
CATTCAATTATAGGCTCAAA+CGG - contig629end:10661-10680 None:intergenic 30.0%
CATTTGATTCCTAAAAAAGC+AGG - contig629end:12822-12841 None:intergenic 30.0%
CCAACATATCAACATAAAGA+TGG - contig629end:12579-12598 None:intergenic 30.0%
CCATCTTTATGTTGATATGT+TGG + contig629end:12576-12595 MsG0080049043.01.T01:intron 30.0%
GTGTTTGCAATGATGTAATT+AGG - contig629end:12644-12663 None:intergenic 30.0%
GTTTGTCTGAATACTTTCAT+TGG + contig629end:13157-13176 MsG0080049043.01.T01:intron 30.0%
TAAAGATGTTGTCCAAAGTT+TGG + contig629end:11837-11856 MsG0080049043.01.T01:CDS 30.0%
TAATAAAAGGACATGCAATG+TGG - contig629end:14032-14051 None:intergenic 30.0%
TACTGATACTTAAAGATGCA+AGG + contig629end:14168-14187 MsG0080049043.01.T01:intron 30.0%
TAGGAGCAATAATCAATTAG+AGG - contig629end:12464-12483 None:intergenic 30.0%
TATAAGCTACAAACCACTTA+TGG + contig629end:12301-12320 MsG0080049043.01.T01:intron 30.0%
TCAATATGCATGTCTTTCAT+TGG + contig629end:13826-13845 MsG0080049043.01.T01:intron 30.0%
TCTTGCTTATAAAGCCAATT+TGG + contig629end:11181-11200 MsG0080049043.01.T01:intron 30.0%
TGAAATAAGCTATAAGCTCA+TGG - contig629end:15163-15182 None:intergenic 30.0%
TGCATTGTCCCTATTTAAAT+TGG - contig629end:12404-12423 None:intergenic 30.0%
TGTAACTCATATCCAGTTAT+TGG + contig629end:13538-13557 MsG0080049043.01.T01:intron 30.0%
TGTTTAGTTAAGGTTCTGTT+TGG + contig629end:10838-10857 MsG0080049043.01.T01:intron 30.0%
TTACATTGGGATACAATAGA+GGG - contig629end:12621-12640 None:intergenic 30.0%
TTCTTAACTCATTGCTTCAA+AGG - contig629end:13087-13106 None:intergenic 30.0%
TTGACAAAAAAAGCTCTGTT+TGG + contig629end:15124-15143 MsG0080049043.01.T01:exon 30.0%
TTGTTCATTTCATCCAAACA+AGG - contig629end:12041-12060 None:intergenic 30.0%
TTTGGAAGAGCTTATGAATA+TGG - contig629end:12339-12358 None:intergenic 30.0%
! AAAAATATTTGGGGTCTGTT+TGG + contig629end:15050-15069 MsG0080049043.01.T01:exon 30.0%
! AATGGCTTTTAAATCTGCTA+GGG - contig629end:12912-12931 None:intergenic 30.0%
! ATCATGTATAAGCTGACTTA+GGG + contig629end:11026-11045 MsG0080049043.01.T01:intron 30.0%
! TATCATGTATAAGCTGACTT+AGG + contig629end:11025-11044 MsG0080049043.01.T01:intron 30.0%
! TTTTTGTACATGCTCCAAAT+TGG - contig629end:11198-11217 None:intergenic 30.0%
!! CTCATTTTGGTACTATATGA+TGG + contig629end:13348-13367 MsG0080049043.01.T01:intron 30.0%
!!! AAGCCTTTCATGTTTTTTCT+TGG - contig629end:14203-14222 None:intergenic 30.0%
!!! AGCCTTTCATGTTTTTTCTT+GGG - contig629end:14202-14221 None:intergenic 30.0%
!!! ATATTTTCACTCTGAAGCAA+TGG + contig629end:13419-13438 MsG0080049043.01.T01:CDS 30.0%
!!! CCCGTTTTAATTTTAGAAGT+TGG + contig629end:14082-14101 MsG0080049043.01.T01:intron 30.0%
!!! CTGCTTTTTTAGGAATCAAA+TGG + contig629end:12820-12839 MsG0080049043.01.T01:intron 30.0%
!!! TTTTGTTGCTTTTCAGCTTA+AGG + contig629end:11768-11787 MsG0080049043.01.T01:intron 30.0%
!!! TTTTTTAGGAATCAAATGGC+TGG + contig629end:12824-12843 MsG0080049043.01.T01:intron 30.0%
AAACTGAAACAGTCCATACA+GGG - contig629end:11956-11975 None:intergenic 35.0%
AAATAAGCCAATCCAAACAG+GGG - contig629end:11052-11071 None:intergenic 35.0%
AACTGAAATGACTAACCTCT+TGG - contig629end:13492-13511 None:intergenic 35.0%
AACTGGATATGAGTTACACA+CGG - contig629end:13536-13555 None:intergenic 35.0%
AATATTATGGGCCCCAAAAT+TGG + contig629end:14444-14463 MsG0080049043.01.T01:intron 35.0%
ACGGCCCTGATATTAATAAA+AGG - contig629end:14045-14064 None:intergenic 35.0%
ATACTTAAAGATGCAAGGCT+TGG + contig629end:14173-14192 MsG0080049043.01.T01:intron 35.0%
ATATTATGGGCCCCAAAATT+GGG + contig629end:14445-14464 MsG0080049043.01.T01:intron 35.0%
ATCTGTTATACCAATCTGCA+TGG - contig629end:14619-14638 None:intergenic 35.0%
ATGAACGAGATATTTGATGG+AGG + contig629end:13864-13883 MsG0080049043.01.T01:intron 35.0%
ATTAGCTAAGCAACAGGAAT+TGG + contig629end:14991-15010 MsG0080049043.01.T01:exon 35.0%
CAAATAAGCCAATCCAAACA+GGG - contig629end:11053-11072 None:intergenic 35.0%
CAAATTTAACCTCACCAAAC+AGG - contig629end:10579-10598 None:intergenic 35.0%
CCTAAAAAAGCAGGGAAAAT+TGG - contig629end:12813-12832 None:intergenic 35.0%
CGAAAAATGCTTAGATTTGC+TGG + contig629end:12427-12446 MsG0080049043.01.T01:intron 35.0%
CGAATCTCAAGATTTCTTTC+TGG + contig629end:10475-10494 MsG0080049043.01.T01:CDS 35.0%
CTTATGATAGAAGCCGTATT+CGG - contig629end:10719-10738 None:intergenic 35.0%
CTTGTATTATTGTCCCTGTA+TGG + contig629end:11940-11959 MsG0080049043.01.T01:intron 35.0%
GAAATCAGGTGAACTTCTAT+TGG + contig629end:12527-12546 MsG0080049043.01.T01:intron 35.0%
GAACTATATACAAGCATCAG+CGG - contig629end:11921-11940 None:intergenic 35.0%
GAAGAAAAGAGGACTTTCAT+TGG + contig629end:10418-10437 MsG0080049043.01.T01:CDS 35.0%
GGCCTTCAAAATTGTTAAGA+CGG - contig629end:14064-14083 None:intergenic 35.0%
GTTACATTGGGATACAATAG+AGG - contig629end:12622-12641 None:intergenic 35.0%
TAAACTGAAACAGTCCATAC+AGG - contig629end:11957-11976 None:intergenic 35.0%
TAGGTAATATTAATCAGGGC+CGG - contig629end:14509-14528 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG - contig629end:11054-11073 None:intergenic 35.0%
TCATCATGACACTGATGTAT+TGG + contig629end:13183-13202 MsG0080049043.01.T01:intron 35.0%
TGAACGAGATATTTGATGGA+GGG + contig629end:13865-13884 MsG0080049043.01.T01:intron 35.0%
TGGAGGGACTAAATTGATTA+AGG + contig629end:13881-13900 MsG0080049043.01.T01:intron 35.0%
TGTTTAGTTAGAGTCCTGTT+TGG + contig629end:10562-10581 MsG0080049043.01.T01:intron 35.0%
TTATACATGATAAGCGCATG+TGG - contig629end:11017-11036 None:intergenic 35.0%
TTGAGCTTATCAACTGACAT+AGG + contig629end:11070-11089 MsG0080049043.01.T01:intron 35.0%
TTGATTCAGTCGAAGAAAAG+AGG + contig629end:10407-10426 MsG0080049043.01.T01:intron 35.0%
TTTGGTCCTCGAAATTGTAA+AGG - contig629end:13966-13985 None:intergenic 35.0%
! CTGTTTGGTGAGGTTAAATT+TGG + contig629end:10577-10596 MsG0080049043.01.T01:intron 35.0%
! GAATGGCTTTTAAATCTGCT+AGG - contig629end:12913-12932 None:intergenic 35.0%
! GGTGTTTTCATAAGCTATCT+TGG + contig629end:11394-11413 MsG0080049043.01.T01:intron 35.0%
! TGTATGATTAGCTAAGCAAC+AGG + contig629end:14985-15004 MsG0080049043.01.T01:exon 35.0%
!! TAATCAGCTACTGCTTTTGA+TGG - contig629end:14672-14691 None:intergenic 35.0%
!!! ATTGGTATTGATTTTGGCAG+AGG + contig629end:13201-13220 MsG0080049043.01.T01:intron 35.0%
!!! CCAATTTTCCCTGCTTTTTT+AGG + contig629end:12810-12829 MsG0080049043.01.T01:intron 35.0%
!!! GAGCTAAAAGCTCTTTTTTG+TGG - contig629end:15080-15099 None:intergenic 35.0%
!!! TTATGACTTTTGGCCTTGTT+TGG + contig629end:12025-12044 MsG0080049043.01.T01:intron 35.0%
!!! TTTTTAGGATGAACGAGAAG+CGG + contig629end:12886-12905 MsG0080049043.01.T01:intron 35.0%
AAATAGCTTAAGGGCCTGTT+TGG - contig629end:11330-11349 None:intergenic 40.0%
AAATTGGCATCTGGTAGAAG+AGG - contig629end:12797-12816 None:intergenic 40.0%
AATAGACAGTTTCGCAACAC+TGG - contig629end:14368-14387 None:intergenic 40.0%
ACCAAAAGAAGGCCAATAAC+TGG - contig629end:13553-13572 None:intergenic 40.0%
ACCTGTATTGTGTCTAGGAA+GGG + contig629end:13300-13319 MsG0080049043.01.T01:intron 40.0%
ACGGCTTCTATCATAAGTGT+CGG + contig629end:10722-10741 MsG0080049043.01.T01:intron 40.0%
ACTATGCCAGAACCAAAAGA+AGG - contig629end:13564-13583 None:intergenic 40.0%
ACTGGATATGAGTTACACAC+GGG - contig629end:13535-13554 None:intergenic 40.0%
AGATGTTGTCCAAAGTTTGG+TGG + contig629end:11840-11859 MsG0080049043.01.T01:CDS 40.0%
AGTATACCTGAGGCAAACAT+AGG - contig629end:12483-12502 None:intergenic 40.0%
ATCAGAGATAGCTGTGCTTT+AGG - contig629end:14528-14547 None:intergenic 40.0%
CTTAAGGAGCTTGAGAAGAT+GGG + contig629end:11784-11803 MsG0080049043.01.T01:CDS 40.0%
GTCCTCGAAATTGTAAAGGT+CGG - contig629end:13962-13981 None:intergenic 40.0%
GTTTATGACACGTCCATAAG+TGG - contig629end:12317-12336 None:intergenic 40.0%
TAAACACACGCGAGATTGTT+TGG - contig629end:12357-12376 None:intergenic 40.0%
TGACTAATCACACCCTTCTT+GGG - contig629end:11811-11830 None:intergenic 40.0%
TGCAATTGCAGAAGCTATGA+AGG - contig629end:10240-10259 None:intergenic 40.0%
TGGGATACAATAGAGGGAAA+GGG - contig629end:12615-12634 None:intergenic 40.0%
TTCTGGCATAGTTGCATCAA+TGG + contig629end:13572-13591 MsG0080049043.01.T01:intron 40.0%
TTGCTGTCTTAAGCTGGATT+AGG + contig629end:14811-14830 MsG0080049043.01.T01:exon 40.0%
TTGGGATACAATAGAGGGAA+AGG - contig629end:12616-12635 None:intergenic 40.0%
TTGTCACCTGTATTGTGTCT+AGG + contig629end:13295-13314 MsG0080049043.01.T01:intron 40.0%
! AAGCATAACGAGTTGAAGGT+TGG + contig629end:12938-12957 MsG0080049043.01.T01:intron 40.0%
! CAATGTGAGGCACTAAAGAA+GGG + contig629end:12745-12764 MsG0080049043.01.T01:CDS 40.0%
! GATCAATGCTTACGATTTGG+AGG - contig629end:13664-13683 None:intergenic 40.0%
! GGCCGTCTTAACAATTTTGA+AGG + contig629end:14059-14078 MsG0080049043.01.T01:intron 40.0%
! TTGCATGTGTTGATGTGTGT+CGG + contig629end:10684-10703 MsG0080049043.01.T01:intron 40.0%
! TTTCTTGCGGCTTTATCAGT+AGG - contig629end:14108-14127 None:intergenic 40.0%
!! ATAGGTTTTGTGAGACTGCT+TGG + contig629end:11088-11107 MsG0080049043.01.T01:intron 40.0%
!! CATAAGTGTCGGTGATATAG+AGG + contig629end:10733-10752 MsG0080049043.01.T01:intron 40.0%
!! GACATGCTACTTGCTATGTT+TGG + contig629end:10971-10990 MsG0080049043.01.T01:intron 40.0%
!! TAGGTTTTGTGAGACTGCTT+GGG + contig629end:11089-11108 MsG0080049043.01.T01:intron 40.0%
!!! TATTGGCCTTCTTTTGGTTC+TGG + contig629end:13555-13574 MsG0080049043.01.T01:intron 40.0%
!!! TCCAGTTATTGGCCTTCTTT+TGG + contig629end:13549-13568 MsG0080049043.01.T01:intron 40.0%
AAAGAACTTCCCTCAGGCTA+AGG + contig629end:13447-13466 MsG0080049043.01.T01:CDS 45.0%
AACGCGCGTTGAGAAATGAT+CGG - contig629end:10085-10104 None:intergenic 45.0%
AACTGCAAAGCAGTGGTACA+CGG + contig629end:12704-12723 MsG0080049043.01.T01:CDS 45.0%
AAGCAGGGAAAATTGGCATC+TGG - contig629end:12806-12825 None:intergenic 45.0%
AGCATGGCCCCAAAAAAGTA+AGG + contig629end:14236-14255 MsG0080049043.01.T01:intron 45.0%
ATGATCGGAAGAGAAGAAGC+AGG - contig629end:10070-10089 None:intergenic 45.0%
ATTGCTCCTATGTTTGCCTC+AGG + contig629end:12474-12493 MsG0080049043.01.T01:intron 45.0%
CACCTGTATTGTGTCTAGGA+AGG + contig629end:13299-13318 MsG0080049043.01.T01:intron 45.0%
CTCACATTGCTCGACAAGTT+GGG - contig629end:12734-12753 None:intergenic 45.0%
CTCGTTATGCTTCAGCTGAA+TGG - contig629end:12930-12949 None:intergenic 45.0%
CTGACTAATCACACCCTTCT+TGG - contig629end:11812-11831 None:intergenic 45.0%
CTGGATATGAGTTACACACG+GGG - contig629end:13534-13553 None:intergenic 45.0%
GAAGAAGCAGGTTACCATTG+CGG - contig629end:10058-10077 None:intergenic 45.0%
GACCGACCTTTACAATTTCG+AGG + contig629end:13957-13976 MsG0080049043.01.T01:intron 45.0%
GACTAATCACACCCTTCTTG+GGG - contig629end:11810-11829 None:intergenic 45.0%
GATTCTGAACTGCAAAGCAG+TGG + contig629end:12697-12716 MsG0080049043.01.T01:CDS 45.0%
GCTTAAGGAGCTTGAGAAGA+TGG + contig629end:11783-11802 MsG0080049043.01.T01:intron 45.0%
GCTTCAGAACATGTACCAAG+AGG + contig629end:13474-13493 MsG0080049043.01.T01:CDS 45.0%
GGTCATCATCCACCAAACTT+TGG - contig629end:11852-11871 None:intergenic 45.0%
GTCAGTGTTTGAGAGAAGCA+TGG - contig629end:14720-14739 None:intergenic 45.0%
GTGTTCAAAGAACTTCCCTC+AGG + contig629end:13441-13460 MsG0080049043.01.T01:CDS 45.0%
GTTTGCCTCAGGTATACTTC+TGG + contig629end:12485-12504 MsG0080049043.01.T01:intron 45.0%
TACCAATCTGCATGGTGACA+TGG - contig629end:14611-14630 None:intergenic 45.0%
TCCCTTCCTAGACACAATAC+AGG - contig629end:13304-13323 None:intergenic 45.0%
! ACAGTTTCGCAACACTGGTT+CGG - contig629end:14363-14382 None:intergenic 45.0%
! AGACTCCAGAAGTATACCTG+AGG - contig629end:12493-12512 None:intergenic 45.0%
! AGTTAGAGTCCTGTTTGGTG+AGG + contig629end:10567-10586 MsG0080049043.01.T01:intron 45.0%
! GCAATGTGAGGCACTAAAGA+AGG + contig629end:12744-12763 MsG0080049043.01.T01:CDS 45.0%
! GCTGAAGCATAACGAGTTGA+AGG + contig629end:12934-12953 MsG0080049043.01.T01:CDS 45.0%
! TCTCTCTTGCTGTCTTAAGC+TGG + contig629end:14805-14824 MsG0080049043.01.T01:exon 45.0%
! TGAGAGAAGCATGGCAACAA+GGG - contig629end:14711-14730 None:intergenic 45.0%
! TTGAGAGAAGCATGGCAACA+AGG - contig629end:14712-14731 None:intergenic 45.0%
!! ACGCGATTCTCTGCTTTTAG+CGG - contig629end:10014-10033 None:intergenic 45.0%
!! GCTACTGCTTTTGATGGAAG+AGG - contig629end:14666-14685 None:intergenic 45.0%
CACCATGTCACCATGCAGAT+TGG + contig629end:14606-14625 MsG0080049043.01.T01:intron 50.0%
CCAACTTGTCGAGCAATGTG+AGG + contig629end:12732-12751 MsG0080049043.01.T01:CDS 50.0%
CCTCACATTGCTCGACAAGT+TGG - contig629end:12735-12754 None:intergenic 50.0%
CTCATGCAGCAGCTAACAGA+TGG + contig629end:13239-13258 MsG0080049043.01.T01:CDS 50.0%
CTCATTGCTTCAAAGGCAGC+AGG - contig629end:13080-13099 None:intergenic 50.0%
GAAGCTGTTCCTTAGCCTGA+GGG - contig629end:13459-13478 None:intergenic 50.0%
GCAAACACGATGTGCAGCTT+AGG + contig629end:12656-12675 MsG0080049043.01.T01:intron 50.0%
TGAAGCTGTTCCTTAGCCTG+AGG - contig629end:13460-13479 None:intergenic 50.0%
TTGTGTCTAGGAAGGGAGAG+TGG + contig629end:13307-13326 MsG0080049043.01.T01:intron 50.0%
! CACTGGGACTCCCAATTTTG+GGG - contig629end:14458-14477 None:intergenic 50.0%
! CCACTGGGACTCCCAATTTT+GGG - contig629end:14459-14478 None:intergenic 50.0%
! GAGAGAAGCATGGCAACAAG+GGG - contig629end:14710-14729 None:intergenic 50.0%
! GTGTTGATGTGTGTCGGTGT+CGG + contig629end:10690-10709 MsG0080049043.01.T01:intron 50.0%
!! CGCGATTCTCTGCTTTTAGC+GGG - contig629end:10013-10032 None:intergenic 50.0%
ACCTGATTTCCAGCGCAGCT+AGG - contig629end:12517-12536 None:intergenic 55.0%
CACACGGGGATTGCAGATTG+AGG - contig629end:13520-13539 None:intergenic 55.0%
CCCAAAATTGGGAGTCCCAG+TGG + contig629end:14456-14475 MsG0080049043.01.T01:intron 55.0%
CTTAGGGCCCCTGTTTGGAT+TGG + contig629end:11042-11061 MsG0080049043.01.T01:intron 55.0%
GAAGCAGGTTACCATTGCGG+CGG - contig629end:10055-10074 None:intergenic 55.0%
GAGAAGATGGGCCCCAAGAA+GGG + contig629end:11796-11815 MsG0080049043.01.T01:CDS 55.0%
GCAGCAGCTAACAGATGGAC+AGG + contig629end:13244-13263 MsG0080049043.01.T01:CDS 55.0%
GGCACTAAAGAAGGGACGTG+AGG + contig629end:12753-12772 MsG0080049043.01.T01:CDS 55.0%
TCCTAGCTGCGCTGGAAATC+AGG + contig629end:12513-12532 MsG0080049043.01.T01:CDS 55.0%
TGAGAAGATGGGCCCCAAGA+AGG + contig629end:11795-11814 MsG0080049043.01.T01:CDS 55.0%
! GCCACTGGGACTCCCAATTT+TGG - contig629end:14460-14479 None:intergenic 55.0%
!! GTTTCGCAACACTGGTTCGG+TGG - contig629end:14360-14379 None:intergenic 55.0%
!! TCGGTGTCGGACACCGAATA+CGG + contig629end:10703-10722 MsG0080049043.01.T01:intron 55.0%
TGGAGTCTTCCTAGCTGCGC+TGG + contig629end:12505-12524 MsG0080049043.01.T01:CDS 60.0%
! GCTGACTTAGGGCCCCTGTT+TGG + contig629end:11037-11056 MsG0080049043.01.T01:intron 60.0%
GCAGGTTACCATTGCGGCGG+CGG - contig629end:10052-10071 None:intergenic 65.0%
ATCTTCCGCCGCCGCCGCAA+TGG + contig629end:10041-10060 MsG0080049043.01.T01:exon 70.0%
CGAGGCTGGGCTACGCCACT+GGG - contig629end:14474-14493 None:intergenic 70.0%
GGTTACCATTGCGGCGGCGG+CGG - contig629end:10049-10068 None:intergenic 70.0%
GTGGCGTAGCCCAGCCTCGA+CGG + contig629end:14475-14494 MsG0080049043.01.T01:intron 70.0%
TCGAGGCTGGGCTACGCCAC+TGG - contig629end:14475-14494 None:intergenic 70.0%
TGGCGTAGCCCAGCCTCGAC+GGG + contig629end:14476-14495 MsG0080049043.01.T01:intron 70.0%
AGCCCAGCCTCGACGGGCAG+TGG + contig629end:14482-14501 MsG0080049043.01.T01:intron 75.0%
AGCCTCGACGGGCAGTGGGC+CGG + contig629end:14487-14506 MsG0080049043.01.T01:intron 75.0%
GCCCACTGCCCGTCGAGGCT+GGG - contig629end:14487-14506 None:intergenic 75.0%
GCCCAGCCTCGACGGGCAGT+GGG + contig629end:14483-14502 MsG0080049043.01.T01:intron 75.0%
! GGCCCACTGCCCGTCGAGGC+TGG - contig629end:14488-14507 None:intergenic 80.0%
! GGCCGGCCCACTGCCCGTCG+AGG - contig629end:14492-14511 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
contig629end gene 10006 15314 10006 ID=MsG0080049043.01;
contig629end mRNA 10006 15314 10006 ID=MsG0080049043.01.T01;Parent=MsG0080049043.01
contig629end exon 10006 10062 10006 ID=MsG0080049043.01.T01.exon;Parent=MsG0080049043.01.T01
contig629end CDS 10060 10062 10060 ID=MsG0080049043.01.T01.cds;Parent=MsG0080049043.01.T01
contig629end CDS 10416 10496 10416 ID=MsG0080049043.01.T01.cds;Parent=MsG0080049043.01.T01
contig629end exon 10416 10496 10416 ID=MsG0080049043.01.T01.exon;Parent=MsG0080049043.01.T01
contig629end CDS 11784 11900 11784 ID=MsG0080049043.01.T01.cds;Parent=MsG0080049043.01.T01
contig629end exon 11784 11900 11784 ID=MsG0080049043.01.T01.exon;Parent=MsG0080049043.01.T01
contig629end CDS 12496 12534 12496 ID=MsG0080049043.01.T01.cds;Parent=MsG0080049043.01.T01
contig629end exon 12496 12534 12496 ID=MsG0080049043.01.T01.exon;Parent=MsG0080049043.01.T01
contig629end CDS 12673 12780 12673 ID=MsG0080049043.01.T01.cds;Parent=MsG0080049043.01.T01
contig629end exon 12673 12780 12673 ID=MsG0080049043.01.T01.exon;Parent=MsG0080049043.01.T01
contig629end CDS 12893 12955 12893 ID=MsG0080049043.01.T01.cds;Parent=MsG0080049043.01.T01
contig629end exon 12893 12955 12893 ID=MsG0080049043.01.T01.exon;Parent=MsG0080049043.01.T01
contig629end CDS 13047 13098 13047 ID=MsG0080049043.01.T01.cds;Parent=MsG0080049043.01.T01
contig629end exon 13047 13098 13047 ID=MsG0080049043.01.T01.exon;Parent=MsG0080049043.01.T01
contig629end CDS 13221 13265 13221 ID=MsG0080049043.01.T01.cds;Parent=MsG0080049043.01.T01
contig629end exon 13221 13265 13221 ID=MsG0080049043.01.T01.exon;Parent=MsG0080049043.01.T01
contig629end CDS 13416 13495 13416 ID=MsG0080049043.01.T01.cds;Parent=MsG0080049043.01.T01
contig629end exon 13416 13495 13416 ID=MsG0080049043.01.T01.exon;Parent=MsG0080049043.01.T01
contig629end CDS 14624 14692 14624 ID=MsG0080049043.01.T01.cds;Parent=MsG0080049043.01.T01
contig629end exon 14624 15314 14624 ID=MsG0080049043.01.T01.exon;Parent=MsG0080049043.01.T01
Gene Sequence

>MsG0080049043.01.T01

ATGTCGAAGAAAAGAGGACTTTCATTGGAAGAGAAGCGAGAGAAGATGCTTCAGATCTTTTACGAATCTCAAGATTTCTTTCTGCTTAAGGAGCTTGAGAAGATGGGCCCCAAGAAGGGTGTGATTAGTCAGTCTGTTAAAGATGTTGTCCAAAGTTTGGTGGATGATGACCTTGTTTCAAAAGATAAGATAGGCACTTCGGTATACTTCTGGAGTCTTCCTAGCTGCGCTGGAAATCAGCTTAGGAATGTACATCAAAAACTTGATTCTGAACTGCAAAGCAGTGGTACACGGCATGCCCAACTTGTCGAGCAATGTGAGGCACTAAAGAAGGGACGTGAGGAATCTGATGAACGAGAAGCGGCCCTAGCAGATTTAAAAGCCATTCAGCTGAAGCATAACGAGTTGAAGAATGAGTTAGAAAAATATAGAGACAATGATCCTGCTGCCTTTGAAGCAATGAAGGAAGCAATTGAAGTTGCTCATGCAGCAGCTAACAGATGGACAGACAATATTTTCACTCTGAAGCAATGGTGTTCAAAGAACTTCCCTCAGGCTAAGGAACAGCTTCAGAACATGTACCAAGAGATTGGTATAACAGATGAATTTGACTATTTGGAGATGACACCTCTTCCATCAAAAGCAGTAGCTGATTAA

Protein sequence

>MsG0080049043.01.T01

MSKKRGLSLEEKREKMLQIFYESQDFFLLKELEKMGPKKGVISQSVKDVVQSLVDDDLVSKDKIGTSVYFWSLPSCAGNQLRNVHQKLDSELQSSGTRHAQLVEQCEALKKGREESDEREAALADLKAIQLKHNELKNELEKYRDNDPAAFEAMKEAIEVAHAAANRWTDNIFTLKQWCSKNFPQAKEQLQNMYQEIGITDEFDYLEMTPLPSKAVAD*