AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029792.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029792.01.T01 MTR_5g092680 97.059 34 1 0 84 117 25 58 2.51e-18 79.3
MsG0580029792.01.T01 MTR_5g092680 91.176 34 3 0 124 157 133 166 3.42e-13 65.5
MsG0580029792.01.T01 MTR_5g092680 97.059 34 1 0 84 117 87 120 5.83e-18 79.7
MsG0580029792.01.T01 MTR_5g092680 93.939 33 2 0 124 156 195 227 6.10e-13 65.9
MsG0580029792.01.T01 MTR_5g092680 97.059 34 1 0 84 117 88 121 5.91e-18 79.7
MsG0580029792.01.T01 MTR_5g092680 93.939 33 2 0 124 156 196 228 6.15e-13 65.9
MsG0580029792.01.T01 MTR_3g051460 50.000 62 31 0 58 119 34 95 1.16e-12 64.7
MsG0580029792.01.T01 MTR_3g051460 53.704 54 25 0 67 120 8 61 2.33e-12 63.5
MsG0580029792.01.T01 MTR_3g051460 69.231 39 12 0 82 120 6 44 2.75e-12 62.8
MsG0580029792.01.T01 MTR_3g075380 65.116 43 12 2 80 119 10 52 1.47e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029792.01.T01 AT5G07470 76.923 39 9 0 82 120 23 61 9.77e-16 72.4
MsG0580029792.01.T01 AT4G25130 73.684 38 10 0 82 119 79 116 2.63e-15 72.4
MsG0580029792.01.T01 AT5G07460 75.758 33 8 0 85 117 42 74 1.02e-13 67.4
MsG0580029792.01.T01 AT5G61640 73.529 34 9 0 86 119 27 60 1.48e-12 63.9
MsG0580029792.01.T01 AT5G61640 73.529 34 9 0 86 119 54 87 1.93e-12 63.9

Find 52 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCAGCAGTTTGCTGCTTT+TGG 0.133192 5:-102026843 MsG0580029792.01.T01:CDS
CTGAATTGTAGAAATATAAA+AGG 0.211905 5:+102028604 None:intergenic
GAAAATAGCTAAAGAGTCTT+TGG 0.300627 5:-102025356 MsG0580029792.01.T01:CDS
TACCAGTCATAACCAAGATT+TGG 0.345807 5:-102028986 MsG0580029792.01.T01:CDS
AGAACAAGAGAGAGAGAAAT+GGG 0.355115 5:+102028907 None:intergenic
AATTAACCATAGCACCGAAT+TGG 0.359283 5:+102025185 None:intergenic
CTTTCACTCACACTCTCACT+TGG 0.380765 5:-102028886 MsG0580029792.01.T01:CDS
CTTTCTCAAGGTACTGTTGA+TGG 0.393321 5:+102025255 None:intergenic
TTTGGGGCTGGCTGCTTCTG+GGG 0.398460 5:-102026825 MsG0580029792.01.T01:CDS
GGTGTTAGAGAGAGAGGATG+AGG 0.400359 5:+102028942 None:intergenic
CTTCCTGCCAAGAGTTCTAC+AGG 0.405732 5:-102025289 MsG0580029792.01.T01:CDS
AAGAACAAGAGAGAGAGAAA+TGG 0.412750 5:+102028906 None:intergenic
GGAACAACAAGAGAAGCAAT+TGG 0.418797 5:-102025335 MsG0580029792.01.T01:CDS
TTAGTCTTCCAGAGGGTGCC+TGG 0.428460 5:-102026795 MsG0580029792.01.T01:CDS
CTTGAGAAAGGTGGTCGATT+CGG 0.429559 5:-102025242 MsG0580029792.01.T01:CDS
TACTAACTCCAGGCACCCTC+TGG 0.440966 5:+102026787 None:intergenic
ATTAACCATAGCACCGAATT+GGG 0.458836 5:+102025186 None:intergenic
AAGATGAGAATTTGTGGAGC+AGG 0.472195 5:-102028659 MsG0580029792.01.T01:CDS
AAGGATGCAATGACCCAATT+CGG 0.477354 5:-102025199 MsG0580029792.01.T01:CDS
CATGGATTCAACCATTCCTC+AGG 0.478204 5:-102026891 MsG0580029792.01.T01:CDS
CCTCAGCCCTGTAGAACTCT+TGG 0.486579 5:+102025282 None:intergenic
GAACAACAAGAGAAGCAATT+GGG 0.490289 5:-102025334 MsG0580029792.01.T01:CDS
GTGGGAACACAGTACAGATC+TGG 0.492891 5:-102025405 MsG0580029792.01.T01:intron
GGTGCTGGTATATCGTCATC+TGG 0.495555 5:+102026867 None:intergenic
TGAATTGTAGAAATATAAAA+GGG 0.496820 5:+102028605 None:intergenic
GAGAATTTGTGGAGCAGGTA+TGG 0.506591 5:-102028654 MsG0580029792.01.T01:CDS
AGAAATGGGAAAAGCTTCAA+TGG 0.510702 5:+102028921 None:intergenic
CGTCATCTGGCCCTGAGGAA+TGG 0.511753 5:+102026880 None:intergenic
AACCAAATCTTGGTTATGAC+TGG 0.511786 5:+102028984 None:intergenic
TTCAAGCAATCTGCTGCTAA+AGG 0.517342 5:-102025218 MsG0580029792.01.T01:CDS
TTCAATGGTGTTAGAGAGAG+AGG 0.519046 5:+102028936 None:intergenic
TTGTTGAAGATGAGAATTTG+TGG 0.519052 5:-102028665 MsG0580029792.01.T01:CDS
TGCAAGGTCATCGGAGAGCA+TGG 0.519772 5:-102026909 MsG0580029792.01.T01:CDS
AAAGCAGCAAACTGCTGACC+TGG 0.522845 5:+102026846 None:intergenic
AATGACCCAATTCGGTGCTA+TGG 0.544140 5:-102025191 MsG0580029792.01.T01:CDS
ACCTCTGTCTTACTAACTCC+AGG 0.548827 5:+102026777 None:intergenic
AACAAGAGAAGCAATTGGGC+AGG 0.550479 5:-102025330 MsG0580029792.01.T01:CDS
GCAAACTGCTGACCTGGTGC+TGG 0.552206 5:+102026852 None:intergenic
TTTCACTCACACTCTCACTT+GGG 0.553380 5:-102028885 MsG0580029792.01.T01:intron
GATTGGCAGTGCAAGGTCAT+CGG 0.571840 5:-102026918 MsG0580029792.01.T01:intron
AGCCCTGTAGAACTCTTGGC+AGG 0.573955 5:+102025286 None:intergenic
CATCAACAGTACCTTGAGAA+AGG 0.580843 5:-102025254 MsG0580029792.01.T01:CDS
CCAAGAGTTCTACAGGGCTG+AGG 0.583932 5:-102025282 MsG0580029792.01.T01:CDS
GTGTTGAATTAGTCTTCCAG+AGG 0.595505 5:-102026803 MsG0580029792.01.T01:CDS
CGAATCGACCACCTTTCTCA+AGG 0.605526 5:+102025243 None:intergenic
AGAGGATGAGGATTCGCTCA+CGG 0.612435 5:+102028954 None:intergenic
TGTTGAATTAGTCTTCCAGA+GGG 0.628480 5:-102026802 MsG0580029792.01.T01:CDS
ATGGATTCAACCATTCCTCA+GGG 0.662540 5:-102026890 MsG0580029792.01.T01:CDS
CAACAGTACCTTGAGAAAGG+TGG 0.667397 5:-102025251 MsG0580029792.01.T01:CDS
GATGACGATATACCAGCACC+AGG 0.678617 5:-102026864 MsG0580029792.01.T01:CDS
TTCCTGCCAAGAGTTCTACA+GGG 0.687032 5:-102025288 MsG0580029792.01.T01:CDS
TATATCGTCATCTGGCCCTG+AGG 0.694509 5:+102026875 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAAAAATGTTTTTGT+GGG - Chr5:102025389-102025408 MsG0580029792.01.T01:CDS 10.0%
!!! TATAAAAAAAAATGTTTTTG+TGG - Chr5:102025388-102025407 MsG0580029792.01.T01:CDS 10.0%
!!! TTATTATTTATGAATTTTTC+TGG - Chr5:102025452-102025471 MsG0580029792.01.T01:intron 10.0%
!! AAATACTGTTAAAAAACATA+AGG + Chr5:102026949-102026968 None:intergenic 15.0%
!! AAATATAGTGAAAATTGAAA+AGG + Chr5:102025627-102025646 None:intergenic 15.0%
!! AATACTGTTAAAAAACATAA+GGG + Chr5:102026948-102026967 None:intergenic 15.0%
!! ACTAAAAAAACTAAAAAACA+AGG + Chr5:102025600-102025619 None:intergenic 15.0%
!! TAATTAGTGTTTAATGATAA+TGG - Chr5:102026509-102026528 MsG0580029792.01.T01:intron 15.0%
!! TGAATTGTAGAAATATAAAA+GGG + Chr5:102025566-102025585 None:intergenic 15.0%
!!! ATAGATTTTTTGAAAGAAAA+GGG + Chr5:102025369-102025388 None:intergenic 15.0%
!!! ATGATTATAATTTCTAGATA+AGG - Chr5:102027007-102027026 MsG0580029792.01.T01:intron 15.0%
!!! TATAGATTTTTTGAAAGAAA+AGG + Chr5:102025370-102025389 None:intergenic 15.0%
!!! TATATTGATAATAATAACAG+AGG - Chr5:102026375-102026394 MsG0580029792.01.T01:intron 15.0%
!!! TGATTATAATTTCTAGATAA+GGG - Chr5:102027008-102027027 MsG0580029792.01.T01:intron 15.0%
!!! TTTTAACAGTATTTTGAAAA+TGG - Chr5:102026955-102026974 MsG0580029792.01.T01:intron 15.0%
!! AAAACATCAAAAGAAAAGAA+TGG - Chr5:102026053-102026072 MsG0580029792.01.T01:intron 20.0%
!! AAGTATAAAACCATTTGATA+TGG - Chr5:102028040-102028059 MsG0580029792.01.T01:intron 20.0%
!! AATAAGAAACAAAGTGTAAT+TGG + Chr5:102025329-102025348 None:intergenic 20.0%
!! AATTTACTAAAAGAACATGT+TGG + Chr5:102027932-102027951 None:intergenic 20.0%
!! AGAATGCATTTATACATAAA+AGG + Chr5:102026196-102026215 None:intergenic 20.0%
!! ATAGCTCACTATATTTATTT+AGG + Chr5:102028220-102028239 None:intergenic 20.0%
!! ATGCATTAGAAATTTATAGA+TGG - Chr5:102026283-102026302 MsG0580029792.01.T01:intron 20.0%
!! CTGAATTGTAGAAATATAAA+AGG + Chr5:102025567-102025586 None:intergenic 20.0%
!! GAATGCATTTATACATAAAA+GGG + Chr5:102026195-102026214 None:intergenic 20.0%
!! GATTCATGTAATTTATTGAA+GGG - Chr5:102025480-102025499 MsG0580029792.01.T01:intron 20.0%
!! TCAAAAATGAACATTTAAGA+TGG + Chr5:102026868-102026887 None:intergenic 20.0%
!! TGATTCATGTAATTTATTGA+AGG - Chr5:102025479-102025498 MsG0580029792.01.T01:intron 20.0%
!! TGTGAATTTAATGACAAATA+AGG + Chr5:102025914-102025933 None:intergenic 20.0%
!! TTTAAGCTAGACAATATAAA+TGG + Chr5:102025756-102025775 None:intergenic 20.0%
!!! AACATGTTCTTTTAGTAAAT+TGG - Chr5:102027931-102027950 MsG0580029792.01.T01:intron 20.0%
!!! AACTCTTTTACTTTGATAAT+AGG - Chr5:102026841-102026860 MsG0580029792.01.T01:CDS 20.0%
!!! AAGATTTAGGACTAATTTAA+GGG + Chr5:102025794-102025813 None:intergenic 20.0%
!!! ACAATTGATAGTATTGATAA+AGG - Chr5:102026239-102026258 MsG0580029792.01.T01:intron 20.0%
!!! ACATGTTCTTTTAGTAAATT+GGG - Chr5:102027932-102027951 MsG0580029792.01.T01:intron 20.0%
!!! ATATTTTCATTCAGTTTTCT+TGG - Chr5:102026906-102026925 MsG0580029792.01.T01:CDS 20.0%
!!! CAATTGATAGTATTGATAAA+GGG - Chr5:102026240-102026259 MsG0580029792.01.T01:intron 20.0%
!!! TAAGATTTAGGACTAATTTA+AGG + Chr5:102025795-102025814 None:intergenic 20.0%
!!! TATAGATGGTCTTATATTTA+AGG - Chr5:102026297-102026316 MsG0580029792.01.T01:intron 20.0%
!!! TGTAAATGGTCTTATAATTA+GGG - Chr5:102026333-102026352 MsG0580029792.01.T01:intron 20.0%
!!! TTGTAAATGGTCTTATAATT+AGG - Chr5:102026332-102026351 MsG0580029792.01.T01:intron 20.0%
! AAACAAAGTGTAATTGGAAA+AGG + Chr5:102025323-102025342 None:intergenic 25.0%
! AAACATCAAAAGAAAAGGAA+TGG + Chr5:102025824-102025843 None:intergenic 25.0%
! AACAAAGTGTAATTGGAAAA+GGG + Chr5:102025322-102025341 None:intergenic 25.0%
! AGAGTAGTTTACAAAATTAC+AGG - Chr5:102026111-102026130 MsG0580029792.01.T01:intron 25.0%
! AGCTAAAACATCAAAAGAAA+AGG + Chr5:102025829-102025848 None:intergenic 25.0%
! ATAGATTACTCCATATCAAA+TGG + Chr5:102028053-102028072 None:intergenic 25.0%
! ATCAAAATGATTAACATTGG+AGG + Chr5:102027790-102027809 None:intergenic 25.0%
! ATTTCCAATATGAGAATCAA+AGG - Chr5:102026573-102026592 MsG0580029792.01.T01:intron 25.0%
! ATTTCCTTTGATTCTCATAT+TGG + Chr5:102026580-102026599 None:intergenic 25.0%
! CTATACATGTATAGAAGAAA+TGG - Chr5:102026439-102026458 MsG0580029792.01.T01:intron 25.0%
! GACCATGAATATCATTAATT+AGG - Chr5:102025657-102025676 MsG0580029792.01.T01:intron 25.0%
! GCTATCAAAATGATTAACAT+TGG + Chr5:102027793-102027812 None:intergenic 25.0%
! TACAGTATCAACAAACAAAA+GGG + Chr5:102026820-102026839 None:intergenic 25.0%
! TATGAGAATCAAAGGAAATA+AGG - Chr5:102026581-102026600 MsG0580029792.01.T01:intron 25.0%
! TCACATAATTGTGTAATCAA+GGG + Chr5:102028477-102028496 None:intergenic 25.0%
! TGTAAACTACTCTCATATTA+AGG + Chr5:102026104-102026123 None:intergenic 25.0%
! TTACAGTATCAACAAACAAA+AGG + Chr5:102026821-102026840 None:intergenic 25.0%
!! ATTTTCATACCTAAACATCT+AGG - Chr5:102026669-102026688 MsG0580029792.01.T01:intron 25.0%
!! TCACTAAAACATCAAAGTTT+TGG - Chr5:102026014-102026033 MsG0580029792.01.T01:intron 25.0%
!!! GACAAACACTTTTTTGTAAA+TGG - Chr5:102026319-102026338 MsG0580029792.01.T01:intron 25.0%
AATTCACATGTGATAACCAA+AGG - Chr5:102025926-102025945 MsG0580029792.01.T01:intron 30.0%
ACAAAGTGTAATTGGAAAAG+GGG + Chr5:102025321-102025340 None:intergenic 30.0%
ACATCAAAAGAAAAGAATGG+AGG - Chr5:102026056-102026075 MsG0580029792.01.T01:intron 30.0%
ACTAAGTAAGTACATGATAC+TGG + Chr5:102026743-102026762 None:intergenic 30.0%
AGAAACTGGTAGAAGAAATT+AGG + Chr5:102028264-102028283 None:intergenic 30.0%
ATCAAAAGAAAAGGAATGGA+GGG + Chr5:102025820-102025839 None:intergenic 30.0%
CATCAAAAGAAAAGAATGGA+GGG - Chr5:102026057-102026076 MsG0580029792.01.T01:intron 30.0%
GAAAAGGGTGAAATTAAGTT+TGG + Chr5:102025354-102025373 None:intergenic 30.0%
GAAAATAGCTAAAGAGTCTT+TGG - Chr5:102028812-102028831 MsG0580029792.01.T01:intron 30.0%
GAAACTGGTAGAAGAAATTA+GGG + Chr5:102028263-102028282 None:intergenic 30.0%
GAATAATAAGTCTAGACTTG+TGG - Chr5:102027696-102027715 MsG0580029792.01.T01:intron 30.0%
GGCCTAATTAATGATATTCA+TGG + Chr5:102025662-102025681 None:intergenic 30.0%
GGTATTATTACTACTACGAA+CGG + Chr5:102028199-102028218 None:intergenic 30.0%
GTCACATAATTGTGTAATCA+AGG + Chr5:102028478-102028497 None:intergenic 30.0%
TATTGTATCAATATGACAGC+AGG + Chr5:102025683-102025702 None:intergenic 30.0%
TCTGAACAGAAAAGAAACAA+GGG + Chr5:102028524-102028543 None:intergenic 30.0%
TTGTTGAAGATGAGAATTTG+TGG - Chr5:102025503-102025522 MsG0580029792.01.T01:intron 30.0%
! GTATTGATAAAGGGTATAGT+TGG - Chr5:102026249-102026268 MsG0580029792.01.T01:intron 30.0%
! TTTATGGTGTTTTCCAACAA+GGG - Chr5:102025966-102025985 MsG0580029792.01.T01:intron 30.0%
!! AATGGCTCTTATGTTTTTGA+AGG - Chr5:102026973-102026992 MsG0580029792.01.T01:intron 30.0%
!! AATGGTCTTATAATTAGGGA+AGG - Chr5:102026337-102026356 MsG0580029792.01.T01:intron 30.0%
!! ACAAGACAATCATTTTTCCT+GGG + Chr5:102027970-102027989 None:intergenic 30.0%
!!! TCTTTTGATGTTTTAGCTCT+TGG - Chr5:102025831-102025850 MsG0580029792.01.T01:intron 30.0%
AACCAAATCTTGGTTATGAC+TGG + Chr5:102025187-102025206 None:intergenic 35.0%
AACCATAGTCACATAATTCG+CGG - Chr5:102028084-102028103 MsG0580029792.01.T01:intron 35.0%
AAGAACAAGAGAGAGAGAAA+TGG + Chr5:102025265-102025284 None:intergenic 35.0%
ACAAACCAATGAGGTTGTAA+GGG - Chr5:102027472-102027491 MsG0580029792.01.T01:intron 35.0%
ACAGAAAATCTAGAAAGCGA+GGG + Chr5:102027150-102027169 None:intergenic 35.0%
ACTCATAGTTCATGTTTAGG+AGG - Chr5:102026546-102026565 MsG0580029792.01.T01:intron 35.0%
ACTTATGAAGATGTGTGTTC+AGG - Chr5:102027445-102027464 MsG0580029792.01.T01:intron 35.0%
AGAAATGGGAAAAGCTTCAA+TGG + Chr5:102025250-102025269 None:intergenic 35.0%
AGAACAAGAGAGAGAGAAAT+GGG + Chr5:102025264-102025283 None:intergenic 35.0%
AGAAGAATTCGGTACTATAG+GGG - Chr5:102028154-102028173 MsG0580029792.01.T01:intron 35.0%
AGCTTAGTAATTGTGACATC+TGG - Chr5:102028714-102028733 MsG0580029792.01.T01:intron 35.0%
AGGAATGAACATGCATGATT+AGG - Chr5:102026601-102026620 MsG0580029792.01.T01:intron 35.0%
ATGAACCTTCTGAACAAACT+TGG - Chr5:102027228-102027247 MsG0580029792.01.T01:intron 35.0%
CAATTCTTGCCTAGATGTTT+AGG + Chr5:102026681-102026700 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG + Chr5:102025821-102025840 None:intergenic 35.0%
CGAATTATGTGACTATGGTT+AGG + Chr5:102028084-102028103 None:intergenic 35.0%
CTCATAGTTCATGTTTAGGA+GGG - Chr5:102026547-102026566 MsG0580029792.01.T01:intron 35.0%
CTTATGAAGATGTGTGTTCA+GGG - Chr5:102027446-102027465 MsG0580029792.01.T01:intron 35.0%
GAACAACAAGAGAAGCAATT+GGG - Chr5:102028834-102028853 MsG0580029792.01.T01:intron 35.0%
GAACACACATCTTCATAAGT+AGG + Chr5:102027445-102027464 None:intergenic 35.0%
GAAGAAAACAAACACTAGCA+AGG + Chr5:102027094-102027113 None:intergenic 35.0%
GAATGAACATGCATGATTAG+GGG - Chr5:102026603-102026622 MsG0580029792.01.T01:intron 35.0%
GAGAAGAATTCGGTACTATA+GGG - Chr5:102028153-102028172 MsG0580029792.01.T01:intron 35.0%
GCAACTCATAGTTCATGTTT+AGG - Chr5:102026543-102026562 MsG0580029792.01.T01:intron 35.0%
GCACATTGTTTGGATCATAT+TGG + Chr5:102027499-102027518 None:intergenic 35.0%
GGAATGAACATGCATGATTA+GGG - Chr5:102026602-102026621 MsG0580029792.01.T01:intron 35.0%
GTCTGAACAGAAAAGAAACA+AGG + Chr5:102028525-102028544 None:intergenic 35.0%
GTCTTATAATTAGGGAAGGA+GGG - Chr5:102026341-102026360 MsG0580029792.01.T01:intron 35.0%
TACCAGTCATAACCAAGATT+TGG - Chr5:102025182-102025201 MsG0580029792.01.T01:CDS 35.0%
TACTAAGCTCTTACCATTCA+TGG + Chr5:102028703-102028722 None:intergenic 35.0%
TATGTGACTATGGTTAGGTA+AGG + Chr5:102028079-102028098 None:intergenic 35.0%
TGAGAAGAACATGAAAAGAG+TGG + Chr5:102028292-102028311 None:intergenic 35.0%
TGATTTCCACTTTCCATGAA+TGG - Chr5:102028687-102028706 MsG0580029792.01.T01:intron 35.0%
TTATTCAGATCAGCAAAGTC+AGG + Chr5:102027682-102027701 None:intergenic 35.0%
TTTCTCAAGTTTACCCTTGT+TGG + Chr5:102025982-102026001 None:intergenic 35.0%
! AAGTTTGTTCAGAAGGTTCA+TGG + Chr5:102027229-102027248 None:intergenic 35.0%
! AATTAACCATAGCACCGAAT+TGG + Chr5:102028986-102029005 None:intergenic 35.0%
! ATTAACCATAGCACCGAATT+GGG + Chr5:102028985-102029004 None:intergenic 35.0%
! ATTCTCAAAGGCACATTGTT+TGG + Chr5:102027509-102027528 None:intergenic 35.0%
! CACGCTGCTTTAATAGTTTA+TGG - Chr5:102025950-102025969 MsG0580029792.01.T01:intron 35.0%
! GTTTATGGTGTTTTCCAACA+AGG - Chr5:102025965-102025984 MsG0580029792.01.T01:intron 35.0%
! TCGATATATACCTGTCGATT+TGG + Chr5:102027571-102027590 None:intergenic 35.0%
! TGAGTTCTTTTTGTCTCAAG+TGG - Chr5:102027651-102027670 MsG0580029792.01.T01:intron 35.0%
! TTGTGGATTGTCAACATTGA+TGG - Chr5:102027713-102027732 MsG0580029792.01.T01:intron 35.0%
! TTTCTTTTCTGTTCAGACTG+TGG - Chr5:102028527-102028546 MsG0580029792.01.T01:intron 35.0%
!! GACAAGACAATCATTTTTCC+TGG + Chr5:102027971-102027990 None:intergenic 35.0%
!! TGTTGAATTAGTCTTCCAGA+GGG - Chr5:102027366-102027385 MsG0580029792.01.T01:intron 35.0%
!! TTAGCTATTTTCTCTTGCTC+AGG + Chr5:102028804-102028823 None:intergenic 35.0%
!!! ACCTTTTTTCAACCAATCAG+CGG - Chr5:102028360-102028379 MsG0580029792.01.T01:intron 35.0%
!!! ATGAGCCTCTGTTTTTTGAA+CGG + Chr5:102026403-102026422 None:intergenic 35.0%
AAAATCTAGAAAGCGAGGGT+AGG + Chr5:102027146-102027165 None:intergenic 40.0%
AAAATGAATCACCCTGAGTG+AGG + Chr5:102028321-102028340 None:intergenic 40.0%
AACCGCGAATTATGTGACTA+TGG + Chr5:102028089-102028108 None:intergenic 40.0%
AAGATGAGAATTTGTGGAGC+AGG - Chr5:102025509-102025528 MsG0580029792.01.T01:intron 40.0%
AAGGATGCAATGACCCAATT+CGG - Chr5:102028969-102028988 MsG0580029792.01.T01:CDS 40.0%
AATCAAGGGAGAATTGCGAT+TGG + Chr5:102028463-102028482 None:intergenic 40.0%
ACATAATTCGCGGTTCGTTT+CGG - Chr5:102028094-102028113 MsG0580029792.01.T01:intron 40.0%
ACTCACAATTCGCAAACAAG+AGG + Chr5:102027636-102027655 None:intergenic 40.0%
AGAAACAGCAAAACCTCGAA+AGG + Chr5:102026781-102026800 None:intergenic 40.0%
AGAATCTGCTTGATACGTTC+TGG - Chr5:102027524-102027543 MsG0580029792.01.T01:intron 40.0%
ATGGATTCAACCATTCCTCA+GGG - Chr5:102027278-102027297 MsG0580029792.01.T01:intron 40.0%
CAAGGGACAAGACAAAATGT+AGG + Chr5:102028507-102028526 None:intergenic 40.0%
CACAAACCAATGAGGTTGTA+AGG - Chr5:102027471-102027490 MsG0580029792.01.T01:intron 40.0%
CATCAACAGTACCTTGAGAA+AGG - Chr5:102028914-102028933 MsG0580029792.01.T01:CDS 40.0%
CCTTCTGAACAAACTTGGAT+TGG - Chr5:102027233-102027252 MsG0580029792.01.T01:intron 40.0%
CGGCAAAAAGAACCAAATCT+TGG + Chr5:102025197-102025216 None:intergenic 40.0%
CGTATCAAGCAGATTCTCAA+AGG + Chr5:102027521-102027540 None:intergenic 40.0%
CTCTTACCATTCATGGAAAG+TGG + Chr5:102028696-102028715 None:intergenic 40.0%
CTGGATCTTTGTATGTGACA+GGG - Chr5:102028733-102028752 MsG0580029792.01.T01:intron 40.0%
GAAGAACATGAAAAGAGTGG+AGG + Chr5:102028289-102028308 None:intergenic 40.0%
GAATGGAGGGAGTAAGATTT+AGG + Chr5:102025807-102025826 None:intergenic 40.0%
GACAGAAAATCTAGAAAGCG+AGG + Chr5:102027151-102027170 None:intergenic 40.0%
GGAACAACAAGAGAAGCAAT+TGG - Chr5:102028833-102028852 MsG0580029792.01.T01:intron 40.0%
GGAGAAGAATTCGGTACTAT+AGG - Chr5:102028152-102028171 MsG0580029792.01.T01:intron 40.0%
TAGCTCTTGGCACAAGTTTA+AGG - Chr5:102025844-102025863 MsG0580029792.01.T01:intron 40.0%
TATTAAAGCAGCGTGACCTT+TGG + Chr5:102025945-102025964 None:intergenic 40.0%
TCTGGATCTTTGTATGTGAC+AGG - Chr5:102028732-102028751 MsG0580029792.01.T01:intron 40.0%
TCTTGTCACTGAGTATGTGA+TGG - Chr5:102027984-102028003 MsG0580029792.01.T01:intron 40.0%
TGGATCTTTGTATGTGACAG+GGG - Chr5:102028734-102028753 MsG0580029792.01.T01:intron 40.0%
TGGTTACAGTAAAATGGGGA+CGG + Chr5:102027200-102027219 None:intergenic 40.0%
TTCAAGCAATCTGCTGCTAA+AGG - Chr5:102028950-102028969 MsG0580029792.01.T01:CDS 40.0%
TTGGGTCAAATCAAATTCCC+AGG - Chr5:102027950-102027969 MsG0580029792.01.T01:intron 40.0%
TTGTTCAGAAGGTTCATGGA+GGG + Chr5:102027225-102027244 None:intergenic 40.0%
TTTCACTCACACTCTCACTT+GGG - Chr5:102025283-102025302 MsG0580029792.01.T01:CDS 40.0%
TTTGTTCAGAAGGTTCATGG+AGG + Chr5:102027226-102027245 None:intergenic 40.0%
! ACCGCTGATTGGTTGAAAAA+AGG + Chr5:102028364-102028383 None:intergenic 40.0%
! ACTATAGGGGTATACAGCTT+CGG - Chr5:102028167-102028186 MsG0580029792.01.T01:intron 40.0%
! AGGGCTTGGTTACAGTAAAA+TGG + Chr5:102027206-102027225 None:intergenic 40.0%
! CCAATCCAAGTTTGTTCAGA+AGG + Chr5:102027236-102027255 None:intergenic 40.0%
! GGCTTGGTTACAGTAAAATG+GGG + Chr5:102027204-102027223 None:intergenic 40.0%
! GGGCTTGGTTACAGTAAAAT+GGG + Chr5:102027205-102027224 None:intergenic 40.0%
! GGTCTTATAATTAGGGAAGG+AGG - Chr5:102026340-102026359 MsG0580029792.01.T01:intron 40.0%
! TTCAATGGTGTTAGAGAGAG+AGG + Chr5:102025235-102025254 None:intergenic 40.0%
!! CTTACAACCTCATTGGTTTG+TGG + Chr5:102027473-102027492 None:intergenic 40.0%
!! CTTTCTCAAGGTACTGTTGA+TGG + Chr5:102028916-102028935 None:intergenic 40.0%
!! GTGTTGAATTAGTCTTCCAG+AGG - Chr5:102027365-102027384 MsG0580029792.01.T01:intron 40.0%
AAACATAAGGGCCACCAAGT+TGG + Chr5:102026936-102026955 None:intergenic 45.0%
AAAGAGTGGAGGTGAGAAAC+TGG + Chr5:102028278-102028297 None:intergenic 45.0%
AACAAACACTAGCAAGGAGC+TGG + Chr5:102027088-102027107 None:intergenic 45.0%
AACAAGAGAAGCAATTGGGC+AGG - Chr5:102028838-102028857 MsG0580029792.01.T01:intron 45.0%
AACATAAGGGCCACCAAGTT+GGG + Chr5:102026935-102026954 None:intergenic 45.0%
ACCTCTGTCTTACTAACTCC+AGG + Chr5:102027394-102027413 None:intergenic 45.0%
AGCAAAACCTCGAAAGGACT+CGG + Chr5:102026775-102026794 None:intergenic 45.0%
AGGCTCCGTTCAAAAAACAG+AGG - Chr5:102026395-102026414 MsG0580029792.01.T01:intron 45.0%
ATGTGACAGGGGAATGATGT+GGG - Chr5:102028745-102028764 MsG0580029792.01.T01:intron 45.0%
CAACAGTACCTTGAGAAAGG+TGG - Chr5:102028917-102028936 MsG0580029792.01.T01:CDS 45.0%
CATGGATTCAACCATTCCTC+AGG - Chr5:102027277-102027296 MsG0580029792.01.T01:intron 45.0%
CTTGAGAAAGGTGGTCGATT+CGG - Chr5:102028926-102028945 MsG0580029792.01.T01:CDS 45.0%
CTTTCACTCACACTCTCACT+TGG - Chr5:102025282-102025301 MsG0580029792.01.T01:CDS 45.0%
GAGAATTTGTGGAGCAGGTA+TGG - Chr5:102025514-102025533 MsG0580029792.01.T01:intron 45.0%
GGAGTTAGTAAGACAGAGGT+TGG - Chr5:102027394-102027413 MsG0580029792.01.T01:intron 45.0%
GGTTACAGTAAAATGGGGAC+GGG + Chr5:102027199-102027218 None:intergenic 45.0%
TACGCGACAGGAGAAGAATT+CGG - Chr5:102028143-102028162 MsG0580029792.01.T01:intron 45.0%
TATGTGACAGGGGAATGATG+TGG - Chr5:102028744-102028763 MsG0580029792.01.T01:intron 45.0%
TTCCTGCCAAGAGTTCTACA+GGG - Chr5:102028880-102028899 MsG0580029792.01.T01:intron 45.0%
TTGGACCCTTACAACCTCAT+TGG + Chr5:102027480-102027499 None:intergenic 45.0%
! AGTACCGAATTCGGGTACTT+CGG + Chr5:102028434-102028453 None:intergenic 45.0%
! GTTTTCTTGGCATCCCAACT+TGG - Chr5:102026919-102026938 MsG0580029792.01.T01:intron 45.0%
!! AAACTTGGATTGGCAGTGCA+AGG - Chr5:102027243-102027262 MsG0580029792.01.T01:intron 45.0%
!! AATGACCCAATTCGGTGCTA+TGG - Chr5:102028977-102028996 MsG0580029792.01.T01:CDS 45.0%
!! TGGTACGTGAGTACCGAATT+CGG + Chr5:102028443-102028462 None:intergenic 45.0%
!!! GTCAGCAGTTTGCTGCTTTT+GGG - Chr5:102027326-102027345 MsG0580029792.01.T01:intron 45.0%
!!! TCAGCAGTTTGCTGCTTTTG+GGG - Chr5:102027327-102027346 MsG0580029792.01.T01:intron 45.0%
AAAGCAGCAAACTGCTGACC+TGG + Chr5:102027325-102027344 None:intergenic 50.0%
ACAGTAAAATGGGGACGGGT+TGG + Chr5:102027195-102027214 None:intergenic 50.0%
AGAAAGCGAGGGTAGGAACT+TGG + Chr5:102027139-102027158 None:intergenic 50.0%
AGAGGATGAGGATTCGCTCA+CGG + Chr5:102025217-102025236 None:intergenic 50.0%
AGGATTGTGCAAAAGCCCCT+GGG + Chr5:102027425-102027444 None:intergenic 50.0%
ATTCGGGTACTTCGGCGTAT+TGG + Chr5:102028426-102028445 None:intergenic 50.0%
CAAGCATGGTTACCGCTGAT+TGG + Chr5:102028375-102028394 None:intergenic 50.0%
CAATCAGCGGTAACCATGCT+TGG - Chr5:102028373-102028392 MsG0580029792.01.T01:intron 50.0%
CGAATCGACCACCTTTCTCA+AGG + Chr5:102028928-102028947 None:intergenic 50.0%
CTTCCTGCCAAGAGTTCTAC+AGG - Chr5:102028879-102028898 MsG0580029792.01.T01:intron 50.0%
GATGACGATATACCAGCACC+AGG - Chr5:102027304-102027323 MsG0580029792.01.T01:intron 50.0%
GATTGGCAGTGCAAGGTCAT+CGG - Chr5:102027250-102027269 MsG0580029792.01.T01:intron 50.0%
GCAAAACCTCGAAAGGACTC+GGG + Chr5:102026774-102026793 None:intergenic 50.0%
GCCTGGAGTTAGTAAGACAG+AGG - Chr5:102027390-102027409 MsG0580029792.01.T01:intron 50.0%
GGTGTTAGAGAGAGAGGATG+AGG + Chr5:102025229-102025248 None:intergenic 50.0%
GTAACCATGCTTGGTACGCT+TGG - Chr5:102028382-102028401 MsG0580029792.01.T01:intron 50.0%
GTGGGAACACAGTACAGATC+TGG - Chr5:102028763-102028782 MsG0580029792.01.T01:intron 50.0%
TAGGATTGTGCAAAAGCCCC+TGG + Chr5:102027426-102027445 None:intergenic 50.0%
TATATCGTCATCTGGCCCTG+AGG + Chr5:102027296-102027315 None:intergenic 50.0%
TATTGGTACGCACAAACCCG+CGG + Chr5:102028409-102028428 None:intergenic 50.0%
TCAGGGACCACAAACCAATG+AGG - Chr5:102027463-102027482 MsG0580029792.01.T01:intron 50.0%
TCCTACTACGCCAAATCGAC+AGG - Chr5:102027558-102027577 MsG0580029792.01.T01:intron 50.0%
TCTCACTCAGTCCTCACTCA+GGG - Chr5:102028307-102028326 MsG0580029792.01.T01:intron 50.0%
TTCTCACTCAGTCCTCACTC+AGG - Chr5:102028306-102028325 MsG0580029792.01.T01:intron 50.0%
TTCTTGGCATCCCAACTTGG+TGG - Chr5:102026922-102026941 MsG0580029792.01.T01:intron 50.0%
TTGATTCCCGAGTCCTTTCG+AGG - Chr5:102026765-102026784 MsG0580029792.01.T01:intron 50.0%
! ACAGAGGTTGGTTACACCCA+GGG - Chr5:102027406-102027425 MsG0580029792.01.T01:intron 50.0%
! TACGCCGAAGTACCCGAATT+CGG - Chr5:102028427-102028446 MsG0580029792.01.T01:intron 50.0%
!! ACCTGTCGATTTGGCGTAGT+AGG + Chr5:102027562-102027581 None:intergenic 50.0%
!! CGGGTTGGTGAAAACAAGCA+AGG + Chr5:102027180-102027199 None:intergenic 50.0%
!! GGTACGTGAGTACCGAATTC+GGG + Chr5:102028442-102028461 None:intergenic 50.0%
!! GGTGCTGGTATATCGTCATC+TGG + Chr5:102027304-102027323 None:intergenic 50.0%
!!! GGTCAGCAGTTTGCTGCTTT+TGG - Chr5:102027325-102027344 MsG0580029792.01.T01:intron 50.0%
AGCCCTGTAGAACTCTTGGC+AGG + Chr5:102028885-102028904 None:intergenic 55.0%
CAGAAGGTTCATGGAGGGCT+TGG + Chr5:102027220-102027239 None:intergenic 55.0%
CCAAGAGTTCTACAGGGCTG+AGG - Chr5:102028886-102028905 MsG0580029792.01.T01:CDS 55.0%
CCTCAGCCCTGTAGAACTCT+TGG + Chr5:102028889-102028908 None:intergenic 55.0%
GCGAGGGTAGGAACTTGGTT+TGG + Chr5:102027134-102027153 None:intergenic 55.0%
GTTCGTTTCGGTACGCGGTA+CGG - Chr5:102028106-102028125 MsG0580029792.01.T01:intron 55.0%
TACTAACTCCAGGCACCCTC+TGG + Chr5:102027384-102027403 None:intergenic 55.0%
TGCAAGGTCATCGGAGAGCA+TGG - Chr5:102027259-102027278 MsG0580029792.01.T01:intron 55.0%
TTCGTTTCGGTACGCGGTAC+GGG - Chr5:102028107-102028126 MsG0580029792.01.T01:intron 55.0%
! CAGAGGTTGGTTACACCCAG+GGG - Chr5:102027407-102027426 MsG0580029792.01.T01:intron 55.0%
! GACAGAGGTTGGTTACACCC+AGG - Chr5:102027405-102027424 MsG0580029792.01.T01:intron 55.0%
! TGGTTTGGCAGGAGTGGAGA+AGG + Chr5:102027119-102027138 None:intergenic 55.0%
!! GGAACTTGGTTTGGCAGGAG+TGG + Chr5:102027125-102027144 None:intergenic 55.0%
!! GGGTAGGAACTTGGTTTGGC+AGG + Chr5:102027130-102027149 None:intergenic 55.0%
!! TTAGTCTTCCAGAGGGTGCC+TGG - Chr5:102027373-102027392 MsG0580029792.01.T01:intron 55.0%
!!! CAGTTTGCTGCTTTTGGGGC+TGG - Chr5:102027331-102027350 MsG0580029792.01.T01:intron 55.0%
!!! TTTTGGGGCTGGCTGCTTCT+GGG - Chr5:102027342-102027361 MsG0580029792.01.T01:intron 55.0%
CACTAGCAAGGAGCTGGACG+TGG + Chr5:102027082-102027101 None:intergenic 60.0%
CGGACCAAGCGTACCAAGCA+TGG + Chr5:102028389-102028408 None:intergenic 60.0%
CGTCATCTGGCCCTGAGGAA+TGG + Chr5:102027291-102027310 None:intergenic 60.0%
GCAAACTGCTGACCTGGTGC+TGG + Chr5:102027319-102027338 None:intergenic 60.0%
TCGCGGTTCGTTTCGGTACG+CGG - Chr5:102028101-102028120 MsG0580029792.01.T01:intron 60.0%
TGCTTGGTACGCTTGGTCCG+CGG - Chr5:102028389-102028408 MsG0580029792.01.T01:intron 60.0%
TTCGGTACGCGGTACGGGTA+CGG - Chr5:102028112-102028131 MsG0580029792.01.T01:intron 60.0%
!! GGAGCTGGACGTGGTGCTAT+AGG + Chr5:102027073-102027092 None:intergenic 60.0%
!! TTTGGGGCTGGCTGCTTCTG+GGG - Chr5:102027343-102027362 MsG0580029792.01.T01:intron 60.0%
!!! CTTTTGGGGCTGGCTGCTTC+TGG - Chr5:102027341-102027360 MsG0580029792.01.T01:intron 60.0%
GCTTGGTACGCTTGGTCCGC+GGG - Chr5:102028390-102028409 MsG0580029792.01.T01:intron 65.0%
TCGGTACGCGGTACGGGTAC+GGG - Chr5:102028113-102028132 MsG0580029792.01.T01:intron 65.0%
!! GGACGTGGTGCTATAGGCGC+TGG + Chr5:102027067-102027086 None:intergenic 65.0%
!! GTGGTGCTATAGGCGCTGGC+TGG + Chr5:102027063-102027082 None:intergenic 65.0%
ACGGGTTCGCGGTACGCGAC+AGG - Chr5:102028131-102028150 MsG0580029792.01.T01:intron 70.0%
GCGGTACGGGTACGGGTTCG+CGG - Chr5:102028120-102028139 MsG0580029792.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 102025180 102029010 102025180 ID=MsG0580029792.01;Name=MsG0580029792.01
Chr5 mRNA 102025180 102029010 102025180 ID=MsG0580029792.01.T01;Parent=MsG0580029792.01;Name=MsG0580029792.01.T01;_AED=0.49;_eAED=0.65;_QI=0|0.33|0|1|0|0|4|0|195
Chr5 exon 102025180 102025415 102025180 ID=MsG0580029792.01.T01:exon:24754;Parent=MsG0580029792.01.T01
Chr5 exon 102026790 102026931 102026790 ID=MsG0580029792.01.T01:exon:24753;Parent=MsG0580029792.01.T01
Chr5 exon 102028605 102028689 102028605 ID=MsG0580029792.01.T01:exon:24752;Parent=MsG0580029792.01.T01
Chr5 exon 102028886 102029010 102028886 ID=MsG0580029792.01.T01:exon:24751;Parent=MsG0580029792.01.T01
Chr5 CDS 102028886 102029010 102028886 ID=MsG0580029792.01.T01:cds;Parent=MsG0580029792.01.T01
Chr5 CDS 102028605 102028689 102028605 ID=MsG0580029792.01.T01:cds;Parent=MsG0580029792.01.T01
Chr5 CDS 102026790 102026931 102026790 ID=MsG0580029792.01.T01:cds;Parent=MsG0580029792.01.T01
Chr5 CDS 102025180 102025415 102025180 ID=MsG0580029792.01.T01:cds;Parent=MsG0580029792.01.T01
Gene Sequence

>MsG0580029792.01.T01

TTTACCAGTCATAACCAAGATTTGGTTCTTTTTGCCGTGAGCGAATCCTCATCCTCTCTCTCTAACACCATTGAAGCTTTTCCCATTTCTCTCTCTCTTGTTCTTTCACTCACACTCTCACTTGGGGTTGTTGAAGATGAGAATTTGTGGAGCAGGTATGGTGTTCATATTTCATTTCTTTGTATTTCCCTTTTATATTTCTACAATTCATGCAAGGTCATCGGAGAGCATGGATTCAACCATTCCTCAGGGCCAGATGACGATATACCAGCACCAGGTCAGCAGTTTGCTGCTTTTGGGGCTGGCTGCTTCTGGGGTGTTGAATTAGTCTTCCAGAGGGTGCCTGGAGTTATACAGATCTGGAATATACTTTTCACTCCTGAGCAAGAGAAAATAGCTAAAGAGTCTTTGGAACAACAAGAGAAGCAATTGGGCAGGAAGATTGCTACTGAGATTCTTCCTGCCAAGAGTTCTACAGGGCTGAGGAGTACCATCAACAGTACCTTGAGAAAGGTGGTCGATTCGGTTTCAAGCAATCTGCTGCTAAAGGATGCAATGACCCAATTCGGTGCTATGGTTAATTGTTGA

Protein sequence

>MsG0580029792.01.T01

FTSHNQDLVLFAVSESSSSLSNTIEAFPISLSLVLSLTLSLGVVEDENLWSRYGVHISFLCISLLYFYNSCKVIGEHGFNHSSGPDDDIPAPGQQFAAFGAGCFWGVELVFQRVPGVIQIWNILFTPEQEKIAKESLEQQEKQLGRKIATEILPAKSSTGLRSTINSTLRKVVDSVSSNLLLKDAMTQFGAMVNC*