AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004731.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004731.01.T01 MTR_1g085550 77.064 109 23 1 6 114 43 149 1.53e-51 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004731.01.T01 AT4G01650 54.321 81 33 2 43 121 16 94 2.21e-21 85.1
MsG0180004731.01.T01 AT4G01650 59.701 67 25 1 48 114 100 164 3.48e-21 85.1
MsG0180004731.01.T01 AT4G01650 58.108 74 27 2 43 114 93 164 1.11e-20 84.7

Find 25 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAAGAGTCGAGCAAAAT+TGG 0.187080 1:+81917485 None:intergenic
ATCATCATCGGTGTCGTTTA+AGG 0.240676 1:+81917743 None:intergenic
AACGACACCGATGATGATTC+TGG 0.246364 1:-81917738 MsG0180004731.01.T01:CDS
TGATGATTCTGGGACTTTAT+TGG 0.289143 1:-81917727 MsG0180004731.01.T01:CDS
AGGTTGGCTGATTTCATTCC+TGG 0.313493 1:-81917540 MsG0180004731.01.T01:CDS
CTCAGTAAATTGATCCAAAA+AGG 0.327199 1:-81917510 MsG0180004731.01.T01:CDS
ACGCTTCACTTGATTCCATT+TGG 0.351261 1:-81917584 MsG0180004731.01.T01:CDS
TCGGTGTCGTTTAAGGTGGT+TGG 0.404356 1:+81917750 None:intergenic
CGGTGTCGTTTAAGGTGGTT+GGG 0.405611 1:+81917751 None:intergenic
TCAGAGTCGTTGGTTGAAGA+TGG 0.419018 1:-81917678 MsG0180004731.01.T01:CDS
ATCAGTCAAGATATTCCAAA+TGG 0.452946 1:+81917569 None:intergenic
TGCAAGAGTCGAGCAAAATT+GGG 0.469520 1:+81917486 None:intergenic
CAGAGTCGTTGGTTGAAGAT+GGG 0.478415 1:-81917677 MsG0180004731.01.T01:CDS
CTTGACTGATTATGAAAGGT+TGG 0.487454 1:-81917556 MsG0180004731.01.T01:CDS
ACGACACCGATGATGATTCT+GGG 0.503280 1:-81917737 MsG0180004731.01.T01:CDS
AGTTGAAGATTCAGAGTCGT+TGG 0.518855 1:-81917688 MsG0180004731.01.T01:CDS
TTAAGGTGGTTGGGTTGTGT+TGG 0.535370 1:+81917760 None:intergenic
ATTCACGCAGAATTGAGTCT+AGG 0.570895 1:-81917617 MsG0180004731.01.T01:CDS
TTGGAAGCGCGATACAAAGA+AGG 0.571624 1:+81917779 None:intergenic
AGAGTCGTTGGTTGAAGATG+GGG 0.585019 1:-81917676 MsG0180004731.01.T01:CDS
ATCATCGGTGTCGTTTAAGG+TGG 0.588547 1:+81917746 None:intergenic
ATATCTTGACTGATTATGAA+AGG 0.602548 1:-81917560 MsG0180004731.01.T01:CDS
TGGGACTTTATTGGTGACAG+AGG 0.604754 1:-81917718 MsG0180004731.01.T01:CDS
AATTTACTGAGGGCAAGACC+AGG 0.620856 1:+81917522 None:intergenic
TAAAGTCCCAGAATCATCAT+CGG 0.654239 1:+81917731 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTGCAATATAAACAAA+AGG - Chr1:81916105-81916124 MsG0180004731.01.T01:intron 15.0%
!! AAGAAGAAAAAAAAAAACAT+AGG - Chr1:81916347-81916366 MsG0180004731.01.T01:intron 15.0%
!! AATACACATAATCTTTAATA+CGG + Chr1:81915668-81915687 None:intergenic 15.0%
!! TAAAATTTACATAAACTTAG+TGG - Chr1:81917526-81917545 MsG0180004731.01.T01:CDS 15.0%
!! TCGAAAACAAAATAAAAATA+AGG + Chr1:81917336-81917355 None:intergenic 15.0%
!! TTGTAATTAAAAGTAAAAAC+AGG - Chr1:81917453-81917472 MsG0180004731.01.T01:intron 15.0%
!! TTGTTTATATTGCAAATTTA+GGG + Chr1:81916104-81916123 None:intergenic 15.0%
!! TTTGTTTATATTGCAAATTT+AGG + Chr1:81916105-81916124 None:intergenic 15.0%
!!! ACTTGATTTTATTAAATTCA+CGG - Chr1:81915827-81915846 MsG0180004731.01.T01:intron 15.0%
!!! ATTGTTATTTTCATCAAATA+CGG - Chr1:81916217-81916236 MsG0180004731.01.T01:intron 15.0%
!!! TATTTTCTTGAAAAGAAATT+TGG - Chr1:81916927-81916946 MsG0180004731.01.T01:intron 15.0%
!!! TTATGTAAATTTTAGAAACT+AGG + Chr1:81917520-81917539 None:intergenic 15.0%
!! AATTGCACATATTGAAAATT+GGG + Chr1:81917731-81917750 None:intergenic 20.0%
!! ATAATCTTTAATACGGATAA+TGG + Chr1:81915661-81915680 None:intergenic 20.0%
!! ATTCTAGATATAAAAGTAGT+AGG - Chr1:81915852-81915871 MsG0180004731.01.T01:intron 20.0%
!! GGTTAAAATTAAACTGTATA+TGG - Chr1:81916733-81916752 MsG0180004731.01.T01:intron 20.0%
!! GTATTAAAGATTATGTGTAT+TGG - Chr1:81915667-81915686 MsG0180004731.01.T01:intron 20.0%
!! TAATCTTTAATACGGATAAT+GGG + Chr1:81915660-81915679 None:intergenic 20.0%
!!! AAACTGTATAGTTCTAAATA+GGG - Chr1:81915948-81915967 MsG0180004731.01.T01:intron 20.0%
!!! AAATAAGGTATCATTTAAAG+AGG + Chr1:81917321-81917340 None:intergenic 20.0%
!!! ACAATTTTTTAAACCAAACA+TGG - Chr1:81917493-81917512 MsG0180004731.01.T01:CDS 20.0%
!!! AGGATATGATTTTGAATATT+AGG - Chr1:81916712-81916731 MsG0180004731.01.T01:intron 20.0%
!!! GAAATGCTGTATTTTATATT+TGG - Chr1:81916045-81916064 MsG0180004731.01.T01:intron 20.0%
!!! TAGGAATTACTCTAATTTTT+TGG + Chr1:81915617-81915636 None:intergenic 20.0%
!!! TATGTTTTAGCATTTAAAAC+CGG + Chr1:81916256-81916275 None:intergenic 20.0%
!!! TTATTACATTTTGAAACCAT+AGG - Chr1:81917775-81917794 MsG0180004731.01.T01:CDS 20.0%
! AAAAACAGGAGTTGAAAATT+AGG - Chr1:81917467-81917486 MsG0180004731.01.T01:intron 25.0%
! AATAATACAACCTAGAAAGT+AGG + Chr1:81915636-81915655 None:intergenic 25.0%
! AGATATAAAAGTAGTAGGAA+GGG - Chr1:81915857-81915876 MsG0180004731.01.T01:intron 25.0%
! ATATCTTGACTGATTATGAA+AGG - Chr1:81915261-81915280 MsG0180004731.01.T01:intron 25.0%
! ATATTGTATTAGTGTTGTGT+TGG - Chr1:81915459-81915478 MsG0180004731.01.T01:intron 25.0%
! ATGGTGAAAAATGAAGAAAT+TGG + Chr1:81917380-81917399 None:intergenic 25.0%
! ATTGCACATATTGAAAATTG+GGG + Chr1:81917730-81917749 None:intergenic 25.0%
! CAATTGCACATATTGAAAAT+TGG + Chr1:81917732-81917751 None:intergenic 25.0%
! TAACTATACCTTTAAACTGT+GGG - Chr1:81916582-81916601 MsG0180004731.01.T01:intron 25.0%
! TAACTTGGAGAAAGTAAATT+AGG + Chr1:81916823-81916842 None:intergenic 25.0%
! TAGATATAAAAGTAGTAGGA+AGG - Chr1:81915856-81915875 MsG0180004731.01.T01:intron 25.0%
! TATGATTTCCATATATGTCA+TGG - Chr1:81916517-81916536 MsG0180004731.01.T01:intron 25.0%
! TATTGTATTAGTGTTGTGTT+GGG - Chr1:81915460-81915479 MsG0180004731.01.T01:intron 25.0%
! TTAAAATAAAAAGCCACTCA+TGG + Chr1:81916435-81916454 None:intergenic 25.0%
!! GTTTTCAATTCAATGTAGTT+TGG - Chr1:81916160-81916179 MsG0180004731.01.T01:intron 25.0%
!! TTAGAACTATACAGTTTGTT+TGG + Chr1:81915945-81915964 None:intergenic 25.0%
!! TTTTTGGATCAATTTACTGA+GGG + Chr1:81915312-81915331 None:intergenic 25.0%
!!! AGATTGTTTTGAGAAAGAAT+TGG - Chr1:81917040-81917059 MsG0180004731.01.T01:intron 25.0%
!!! CAAACTGTATAGTTCTAAAT+AGG - Chr1:81915947-81915966 MsG0180004731.01.T01:intron 25.0%
!!! CCATTGAATTTTAAAGGTTA+AGG + Chr1:81916849-81916868 None:intergenic 25.0%
!!! CCTTAACCTTTAAAATTCAA+TGG - Chr1:81916846-81916865 MsG0180004731.01.T01:intron 25.0%
!!! TTGGATTTTTAGAACTGAAT+AGG - Chr1:81917273-81917292 MsG0180004731.01.T01:intron 25.0%
ATAGACTTCAAGATGATTGA+AGG - Chr1:81917090-81917109 MsG0180004731.01.T01:intron 30.0%
ATAGGTCAACATGATTATGT+TGG - Chr1:81916365-81916384 MsG0180004731.01.T01:intron 30.0%
ATCAGTCAAGATATTCCAAA+TGG + Chr1:81915255-81915274 None:intergenic 30.0%
ATGATTATATGCCATGAAGT+AGG + Chr1:81916471-81916490 None:intergenic 30.0%
CAGAAGAATTCTAATAAGAG+GGG + Chr1:81917174-81917193 None:intergenic 30.0%
CATAACTTCCATGACATATA+TGG + Chr1:81916528-81916547 None:intergenic 30.0%
CCAGAAGAATTCTAATAAGA+GGG + Chr1:81917175-81917194 None:intergenic 30.0%
CTCAGTAAATTGATCCAAAA+AGG - Chr1:81915311-81915330 MsG0180004731.01.T01:intron 30.0%
GATATAAAAGTAGTAGGAAG+GGG - Chr1:81915858-81915877 MsG0180004731.01.T01:intron 30.0%
GGGTTAAAATTTGATGCTAA+AGG - Chr1:81917011-81917030 MsG0180004731.01.T01:intron 30.0%
GTAACTATACCTTTAAACTG+TGG - Chr1:81916581-81916600 MsG0180004731.01.T01:intron 30.0%
TAAAGGTTAAGGTTGTAACT+TGG + Chr1:81916838-81916857 None:intergenic 30.0%
TAGACTTCAAGATGATTGAA+GGG - Chr1:81917091-81917110 MsG0180004731.01.T01:intron 30.0%
TAGAGTAATTCCTACTTTCT+AGG - Chr1:81915623-81915642 MsG0180004731.01.T01:intron 30.0%
TCAAACCAAATTTACGAACA+CGG + Chr1:81916905-81916924 None:intergenic 30.0%
TCCAGAAGAATTCTAATAAG+AGG + Chr1:81917176-81917195 None:intergenic 30.0%
TGCTTTAACAGTAACACTTT+AGG + Chr1:81916405-81916424 None:intergenic 30.0%
TGTTCCATTATCTAACAGAT+TGG - Chr1:81916969-81916988 MsG0180004731.01.T01:intron 30.0%
TTCTTATCTACTCTAGTATG+AGG + Chr1:81916332-81916351 None:intergenic 30.0%
! AACAAAAGGCTTATTGATTG+AGG - Chr1:81916119-81916138 MsG0180004731.01.T01:intron 30.0%
! AAGTGTTACTGTTAAAGCAT+AGG - Chr1:81916406-81916425 MsG0180004731.01.T01:intron 30.0%
! ACAAAAGGCTTATTGATTGA+GGG - Chr1:81916120-81916139 MsG0180004731.01.T01:intron 30.0%
! CTTTTTGGATCAATTTACTG+AGG + Chr1:81915313-81915332 None:intergenic 30.0%
! TATATTGCAAATTTAGGGCA+AGG + Chr1:81916099-81916118 None:intergenic 30.0%
! TTTTTCCGTGTTCGTAAATT+TGG - Chr1:81916897-81916916 MsG0180004731.01.T01:intron 30.0%
!! AAACTTGTTGAATACTCCTA+TGG + Chr1:81917794-81917813 None:intergenic 30.0%
!! ACCTTTAAAATTCAATGGCA+CGG - Chr1:81916851-81916870 MsG0180004731.01.T01:intron 30.0%
!! CGCAAGTATTTTTCAAATGT+TGG - Chr1:81917254-81917273 MsG0180004731.01.T01:intron 30.0%
!! TTTTGGTAACCAACTACAAA+TGG - Chr1:81917564-81917583 MsG0180004731.01.T01:CDS 30.0%
!!! TAGCTTTTGACTTGACAAAA+AGG - Chr1:81917659-81917678 MsG0180004731.01.T01:CDS 30.0%
!!! TTGGTTTTGCTTCTTTGTAA+TGG - Chr1:81916064-81916083 MsG0180004731.01.T01:intron 30.0%
AAATGGAGTGCATCTTATCT+TGG - Chr1:81917581-81917600 MsG0180004731.01.T01:CDS 35.0%
AATATCAACATCGTTGAGCT+AGG + Chr1:81915536-81915555 None:intergenic 35.0%
ACATAAAATGACCTTGTTGG+TGG + Chr1:81915896-81915915 None:intergenic 35.0%
AGACTTCAAGATGATTGAAG+GGG - Chr1:81917092-81917111 MsG0180004731.01.T01:intron 35.0%
ATATCAACATCGTTGAGCTA+GGG + Chr1:81915535-81915554 None:intergenic 35.0%
CACATATTGAAAATTGGGGA+AGG + Chr1:81917726-81917745 None:intergenic 35.0%
CCCTCTTATTAGAATTCTTC+TGG - Chr1:81917172-81917191 MsG0180004731.01.T01:intron 35.0%
CTCTCCAATCTGTTAGATAA+TGG + Chr1:81916976-81916995 None:intergenic 35.0%
CTTGACTGATTATGAAAGGT+TGG - Chr1:81915265-81915284 MsG0180004731.01.T01:intron 35.0%
CTTGCAGGTATAATGCAATT+GGG - Chr1:81915352-81915371 MsG0180004731.01.T01:intron 35.0%
GTTTAGTTGCATGCTTGATT+TGG - Chr1:81915734-81915753 MsG0180004731.01.T01:intron 35.0%
TAAAGTCCCAGAATCATCAT+CGG + Chr1:81915093-81915112 None:intergenic 35.0%
TAAGTTAGACACATTCACTC+AGG - Chr1:81915558-81915577 MsG0180004731.01.T01:intron 35.0%
TATGTGTATTGGACACAACA+CGG - Chr1:81915678-81915697 MsG0180004731.01.T01:intron 35.0%
TCGACATAAAATGACCTTGT+TGG + Chr1:81915899-81915918 None:intergenic 35.0%
TCTTGCAGGTATAATGCAAT+TGG - Chr1:81915351-81915370 MsG0180004731.01.T01:intron 35.0%
TGGAAAGTCTGCTATTATTC+AGG - Chr1:81917601-81917620 MsG0180004731.01.T01:CDS 35.0%
TTAGAAACTAGGACCATGTT+TGG + Chr1:81917509-81917528 None:intergenic 35.0%
TTATCTACTCTAGTATGAGG+TGG + Chr1:81916329-81916348 None:intergenic 35.0%
TTGCAGGTATAATGCAATTG+GGG - Chr1:81915353-81915372 MsG0180004731.01.T01:intron 35.0%
! AAATGGTCTATTTTGCAGGT+AGG - Chr1:81917135-81917154 MsG0180004731.01.T01:intron 35.0%
! AAATTTAGGGCAAGGTCATA+AGG + Chr1:81916091-81916110 None:intergenic 35.0%
! AGGAAAATGGTCTATTTTGC+AGG - Chr1:81917131-81917150 MsG0180004731.01.T01:intron 35.0%
! AGTTTGCATGGTTTTTATGC+TGG + Chr1:81917200-81917219 None:intergenic 35.0%
! ATTCAGGTTATTGACCAAGT+GGG - Chr1:81917617-81917636 MsG0180004731.01.T01:CDS 35.0%
! GTTTTGTGTTTTTCCAAGAC+CGG + Chr1:81917411-81917430 None:intergenic 35.0%
! TAGAGAAGTGCATAAAACTC+TGG + Chr1:81917231-81917250 None:intergenic 35.0%
! TATTCAGGTTATTGACCAAG+TGG - Chr1:81917616-81917635 MsG0180004731.01.T01:CDS 35.0%
! TTCAGCTCTTTGAAGGAAAA+TGG - Chr1:81917118-81917137 MsG0180004731.01.T01:intron 35.0%
! TTTTTCACCATTTCCTATGC+CGG - Chr1:81917389-81917408 MsG0180004731.01.T01:intron 35.0%
!! TGATGATTCTGGGACTTTAT+TGG - Chr1:81915094-81915113 MsG0180004731.01.T01:intron 35.0%
!! TTTTTGGTCTGTAAACGAAG+TGG + Chr1:81915601-81915620 None:intergenic 35.0%
!!! GTTTTTTGTGACAGATAGAC+AGG - Chr1:81916692-81916711 MsG0180004731.01.T01:intron 35.0%
AAGAATTGGACTCTTCCATC+TGG - Chr1:81917054-81917073 MsG0180004731.01.T01:intron 40.0%
ACGCTTCACTTGATTCCATT+TGG - Chr1:81915237-81915256 MsG0180004731.01.T01:intron 40.0%
AGATGCACTCCATTTGTAGT+TGG + Chr1:81917576-81917595 None:intergenic 40.0%
AGTTATGTATGCATCAGTCG+TGG - Chr1:81916541-81916560 MsG0180004731.01.T01:intron 40.0%
AGTTGAAGATTCAGAGTCGT+TGG - Chr1:81915133-81915152 MsG0180004731.01.T01:intron 40.0%
ATTCACGCAGAATTGAGTCT+AGG - Chr1:81915204-81915223 MsG0180004731.01.T01:intron 40.0%
CATCATAGCATAGCCAAGTA+TGG - Chr1:81916764-81916783 MsG0180004731.01.T01:intron 40.0%
CATCATATCACAATCCCACT+TGG + Chr1:81917634-81917653 None:intergenic 40.0%
GTTATGTATGCATCAGTCGT+GGG - Chr1:81916542-81916561 MsG0180004731.01.T01:intron 40.0%
TCAGTACTCCCACAGTTTAA+AGG + Chr1:81916593-81916612 None:intergenic 40.0%
TCTTGGTGAATGAAATGTCC+AGG - Chr1:81916613-81916632 MsG0180004731.01.T01:intron 40.0%
TGCAAGAGTCGAGCAAAATT+GGG + Chr1:81915338-81915357 None:intergenic 40.0%
TGCAGGTATAATGCAATTGG+GGG - Chr1:81915354-81915373 MsG0180004731.01.T01:intron 40.0%
TTAGATGCAGCCACTGTATT+AGG + Chr1:81915979-81915998 None:intergenic 40.0%
! AGCATTTAAAACCGGTCCAA+CGG + Chr1:81916248-81916267 None:intergenic 40.0%
! ATGTGAAGCATCCTACTTCA+TGG - Chr1:81916457-81916476 MsG0180004731.01.T01:intron 40.0%
! GAGCAAAATTGGGACCTTTT+TGG + Chr1:81915328-81915347 None:intergenic 40.0%
!! ATCATCATCGGTGTCGTTTA+AGG + Chr1:81915081-81915100 None:intergenic 40.0%
!! CATGCTTGATTTGGCAAGTT+TGG - Chr1:81915743-81915762 MsG0180004731.01.T01:intron 40.0%
!! GCCGTGCCATTGAATTTTAA+AGG + Chr1:81916855-81916874 None:intergenic 40.0%
!! GGTAACTTCTAGTTTGCTCA+GGG + Chr1:81915924-81915943 None:intergenic 40.0%
!! TGGTAACTTCTAGTTTGCTC+AGG + Chr1:81915925-81915944 None:intergenic 40.0%
!!! GGATTCTAGCTAGCGTTTTT+TGG - Chr1:81917547-81917566 MsG0180004731.01.T01:CDS 40.0%
AACGACACCGATGATGATTC+TGG - Chr1:81915083-81915102 MsG0180004731.01.T01:intron 45.0%
AATTTACTGAGGGCAAGACC+AGG + Chr1:81915302-81915321 None:intergenic 45.0%
ACAGATTGGAGAGCAGAACT+TGG - Chr1:81916983-81917002 MsG0180004731.01.T01:intron 45.0%
ACCAACTGATGTGTATTGCC+TGG + Chr1:81916634-81916653 None:intergenic 45.0%
ACGACACCGATGATGATTCT+GGG - Chr1:81915084-81915103 MsG0180004731.01.T01:intron 45.0%
ACTCTAGTATGAGGTGGTTG+TGG + Chr1:81916323-81916342 None:intergenic 45.0%
ATCAAATACGGTCAGTCCGT+TGG - Chr1:81916229-81916248 MsG0180004731.01.T01:intron 45.0%
ATGCAGCCACTGTATTAGGA+AGG + Chr1:81915975-81915994 None:intergenic 45.0%
ATGTCACGCTTCATACCAGA+TGG + Chr1:81917072-81917091 None:intergenic 45.0%
CCTTGCAGCAAAACCATACT+TGG + Chr1:81916780-81916799 None:intergenic 45.0%
CTGCAAGAGTCGAGCAAAAT+TGG + Chr1:81915339-81915358 None:intergenic 45.0%
GAGAGCAGAACTTGGCATTT+GGG - Chr1:81916991-81917010 MsG0180004731.01.T01:intron 45.0%
TAAACGAAGTGGCAAGCACA+AGG + Chr1:81915590-81915609 None:intergenic 45.0%
TAGGGACCTTCCTAATACAG+TGG - Chr1:81915966-81915985 MsG0180004731.01.T01:intron 45.0%
TCACGAGGAACTGTGCTATA+AGG - Chr1:81915704-81915723 MsG0180004731.01.T01:intron 45.0%
TCCAGGCAATACACATCAGT+TGG - Chr1:81916630-81916649 MsG0180004731.01.T01:intron 45.0%
! AATGACCTTGTTGGTGGATG+AGG + Chr1:81915890-81915909 None:intergenic 45.0%
! AGAGTCGTTGGTTGAAGATG+GGG - Chr1:81915145-81915164 MsG0180004731.01.T01:intron 45.0%
! AGGTTGGCTGATTTCATTCC+TGG - Chr1:81915281-81915300 MsG0180004731.01.T01:intron 45.0%
! CAATTTTGCTCGACTCTTGC+AGG - Chr1:81915337-81915356 MsG0180004731.01.T01:intron 45.0%
! CAGAGTCGTTGGTTGAAGAT+GGG - Chr1:81915144-81915163 MsG0180004731.01.T01:intron 45.0%
! GGGGATTTTCAGCTCTTTGA+AGG - Chr1:81917111-81917130 MsG0180004731.01.T01:intron 45.0%
! TCAGAGTCGTTGGTTGAAGA+TGG - Chr1:81915143-81915162 MsG0180004731.01.T01:intron 45.0%
! TGGGACTTTATTGGTGACAG+AGG - Chr1:81915103-81915122 MsG0180004731.01.T01:intron 45.0%
! TGTTTTTCCAAGACCGGCAT+AGG + Chr1:81917405-81917424 None:intergenic 45.0%
! TTAAGGTGGTTGGGTTGTGT+TGG + Chr1:81915064-81915083 None:intergenic 45.0%
! TTGGAAGCGCGATACAAAGA+AGG + Chr1:81915045-81915064 None:intergenic 45.0%
!! AACTGTGGGAGTACTGATCT+TGG - Chr1:81916596-81916615 MsG0180004731.01.T01:intron 45.0%
!! ATCATCGGTGTCGTTTAAGG+TGG + Chr1:81915078-81915097 None:intergenic 45.0%
!! CCAAGTATGGTTTTGCTGCA+AGG - Chr1:81916777-81916796 MsG0180004731.01.T01:intron 45.0%
AAAGCATAGGCGTCCATGAG+TGG - Chr1:81916419-81916438 MsG0180004731.01.T01:intron 50.0%
ACCATTTCCTATGCCGGTCT+TGG - Chr1:81917395-81917414 MsG0180004731.01.T01:intron 50.0%
AGTGGTTGTGGGCGTCTATT+AGG + Chr1:81916290-81916309 None:intergenic 50.0%
ATGTATGCATCAGTCGTGGG+TGG - Chr1:81916545-81916564 MsG0180004731.01.T01:intron 50.0%
CTAGTATGAGGTGGTTGTGG+TGG + Chr1:81916320-81916339 None:intergenic 50.0%
GGAGAGCAGAACTTGGCATT+TGG - Chr1:81916990-81917009 MsG0180004731.01.T01:intron 50.0%
GGCGTCTATTAGGGTAATGC+AGG + Chr1:81916280-81916299 None:intergenic 50.0%
GTGGTTGTGGGCGTCTATTA+GGG + Chr1:81916289-81916308 None:intergenic 50.0%
TAATAGACGCCCACAACCAC+TGG - Chr1:81916289-81916308 MsG0180004731.01.T01:intron 50.0%
TCCAAGACCGGCATAGGAAA+TGG + Chr1:81917399-81917418 None:intergenic 50.0%
TTCCTCCTCATCCACCAACA+AGG - Chr1:81915882-81915901 MsG0180004731.01.T01:intron 50.0%
!! CGGTGTCGTTTAAGGTGGTT+GGG + Chr1:81915073-81915092 None:intergenic 50.0%
!! TCGGTGTCGTTTAAGGTGGT+TGG + Chr1:81915074-81915093 None:intergenic 50.0%
ATACGGTCAGTCCGTTGGAC+CGG - Chr1:81916234-81916253 MsG0180004731.01.T01:intron 55.0%
TATGCATCAGTCGTGGGTGG+TGG - Chr1:81916548-81916567 MsG0180004731.01.T01:intron 55.0%
! CTGGTTTGCGCGAGTTTGCA+TGG + Chr1:81917212-81917231 None:intergenic 55.0%
! GACCTTGTTGGTGGATGAGG+AGG + Chr1:81915887-81915906 None:intergenic 55.0%
GACACAACACGGCTCTCACG+AGG - Chr1:81915689-81915708 MsG0180004731.01.T01:intron 60.0%
GTGGCTACGCCAGTGGTTGT+GGG + Chr1:81916301-81916320 None:intergenic 60.0%
GGTGGCTACGCCAGTGGTTG+TGG + Chr1:81916302-81916321 None:intergenic 65.0%
GGTTGTGGTGGCTACGCCAG+TGG + Chr1:81916308-81916327 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 81915017 81917826 81915017 ID=MsG0180004731.01;Name=MsG0180004731.01
Chr1 mRNA 81915017 81917826 81915017 ID=MsG0180004731.01.T01;Parent=MsG0180004731.01;Name=MsG0180004731.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0.5|2|0|123
Chr1 exon 81917485 81917826 81917485 ID=MsG0180004731.01.T01:exon:34762;Parent=MsG0180004731.01.T01
Chr1 exon 81915017 81915046 81915017 ID=MsG0180004731.01.T01:exon:34761;Parent=MsG0180004731.01.T01
Chr1 CDS 81917485 81917826 81917485 ID=MsG0180004731.01.T01:cds;Parent=MsG0180004731.01.T01
Chr1 CDS 81915017 81915046 81915017 ID=MsG0180004731.01.T01:cds;Parent=MsG0180004731.01.T01
Gene Sequence

>MsG0180004731.01.T01

ATGTTCGTTAAACATCAACTTTACTCCTTCTTTGTATCGCGCTTCCAACACAACCCAACCACCTTAAACGACACCGATGATGATTCTGGGACTTTATTGGTGACAGAGGATGATGAAGTTGAAGATTCAGAGTCGTTGGTTGAAGATGGGGTGTACATAGAAGTCACGAAGCTTGAGAATGAGAAGAATTCACGCAGAATTGAGTCTAGGATTTCTATCGACGCTTCACTTGATTCCATTTGGAATATCTTGACTGATTATGAAAGGTTGGCTGATTTCATTCCTGGTCTTGCCCTCAGTAAATTGATCCAAAAAGGTCCCAATTTTGCTCGACTCTTGCAGGAGTATTCAACAAGTTTGACTCACAAATAA

Protein sequence

>MsG0180004731.01.T01

MFVKHQLYSFFVSRFQHNPTTLNDTDDDSGTLLVTEDDEVEDSESLVEDGVYIEVTKLENEKNSRRIESRISIDASLDSIWNILTDYERLADFIPGLALSKLIQKGPNFARLLQEYSTSLTHK*